F319587

General Info

Members Datasets Scaffolds Average Seq Length
209 130 418 218

Family's Representative Sequence

Representative Sequence 3300049568|Ga0501031_0015681|Ga0501031_0015681_2114_2821
Length 235
Sequence MRDLTAPGAAVRRPLRIVLAEDSALLREGLVGILEKAGHEVLADVADADALLAFTARHEPDVVITDIRMPPTHTDEGLRAAVTLRTQHPDLAIMLLSAYIAEAYVADLLDSTAATGTGSHAGIGYLLKDRVGHVREFLDSLDRVAGGGTVVDPDVVRHLLTRSRNDGPLAALTEREREVLALMAEGYTNPAIANRLFVSEAAVRKHVGNIFAKLPLDPASDRRVTAVLTYLRQPT

Samples

Sample ID Description Type Environment
1 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
4 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
5 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
6 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
7 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
8 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
9 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
10 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
11 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
12 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
13 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
14 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
15 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
16 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
17 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
18 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
19 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
20 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
21 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
22 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
23 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
24 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
25 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
29 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
31 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
32 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
33 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
34 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
35 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
36 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
37 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
38 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
39 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
40 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
41 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
42 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
43 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
44 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
45 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
46 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
47 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
48 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
49 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
50 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
51 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
52 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
53 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
54 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
55 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
56 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
57 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
58 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
59 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
60 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
61 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
62 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
63 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
64 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
65 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
67 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
68 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
69 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
70 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
71 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
72 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
73 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
74 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
75 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
76 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
77 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
78 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
79 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
82 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
83 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
84 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
85 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
86 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
87 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
88 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
89 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
90 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
91 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
92 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
93 2508501039 Frankia saprophytica CN3 Isolate Nodule
94 2643221561 Nocardioides sp. Root151 Isolate Unclassified
95 2643221696 Nocardioides sp. Root140 Isolate Unclassified
96 2643221961 Aeromicrobium sp. Root236 Isolate Unclassified
97 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
98 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
99 2731639228 Motilibacter peucedani DSM 45328 Isolate Rhizosphere
100 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
101 2795385472 Herbihabitans rhizosphaerae DSM 101727 Isolate Rhizosphere
102 2808606394 Promicromonospora sp. C35 Isolate Unclassified
103 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
104 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
105 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
106 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
107 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
108 2858868258 Micromonospora sp. MH33 Isolate Unclassified
109 2858882152 Micromonospora noduli MED15 Isolate Nodule
110 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
111 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
112 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
113 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
114 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
115 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
116 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
117 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
118 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
119 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
120 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
121 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
122 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
123 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
124 8002775197 Frankia nepalensis CN7 Isolate Nodule
125 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
126 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
127 8054734606 Micromonospora hortensis NIE111 Isolate Nodule
128 8055066027 Sphaerisporangium corydalis NEAU-YHS15 Isolate Unclassified
129 8055172936 Sphaerisporangium perillae NEAU-ZS1 Isolate Unclassified
130 8056579771 Promicromonospora iranensis UTMC 00792 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 81.34
Metatranscriptomes 0
Isolates 18.66

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 18.18
Nodule 2.87
Rhizoplane 0
Rhizosphere 60.77
Stem 0
Stem Tuber 0
Unclassified 2.87

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501031_0015681 3300049568 Bacteria 4919
2 JGI25406J46586_10064914 3300003203 Bacteria 1165
3 Ga0068869_100560996 3300005334 Bacteria 960
4 Ga0070708_100487425 3300005445 Bacteria 1163
5 Ga0070708_100818284 3300005445 Unclassified 875
6 Ga0070706_100541895 3300005467 Unclassified 1082
7 Ga0070707_100022122 3300005468 Bacteria 6011
8 Ga0070698_100026668 3300005471 Bacteria 6011
9 Ga0070698_100302386 3300005471 Unclassified 1530
10 Ga0070698_100822067 3300005471 Unclassified 873
11 Ga0070699_100014618 3300005518 Bacteria 6751
12 Ga0070697_100009362 3300005536 Bacteria 7654
13 Ga0070697_100030634 3300005536 Plasmid 4322
14 Ga0070697_100331239 3300005536 Bacteria 1312
15 Ga0070702_100461081 3300005615 Bacteria 924
16 Ga0068860_100000713 3300005843 Bacteria 38044
17 Ga0081455_10000427 3300005937 Bacteria 55256
18 Ga0081455_10005840 3300005937 Bacteria 13388
19 Ga0081455_10008150 3300005937 Bacteria 10930
20 Ga0081538_10002048 3300005981 Bacteria 20113
21 Ga0081539_10029759 3300005985 Bacteria 3404
22 Ga0081539_10038472 3300005985 Bacteria 2835
23 Ga0070717_10106310 3300006028 Unclassified 2389
24 Ga0070717_10769361 3300006028 Unclassified 875
25 Ga0075365_10013741 3300006038 Bacteria 4855
26 Ga0075365_10042477 3300006038 Bacteria 2973
27 Ga0075365_10082059 3300006038 Bacteria 2185
28 Ga0075365_10116562 3300006038 Bacteria 1839
29 Ga0075365_10142244 3300006038 Bacteria 1665
30 Ga0075365_10166164 3300006038 Bacteria 1539
31 Ga0075365_10201072 3300006038 Bacteria 1396
32 Ga0075365_10286755 3300006038 Bacteria 1158
33 Ga0075365_10303732 3300006038 Bacteria 1123
34 Ga0075368_10004185 3300006042 Bacteria 4859
35 Ga0075368_10073621 3300006042 Bacteria 1383
36 Ga0075363_100013960 3300006048 Bacteria 3911
37 Ga0075363_100030135 3300006048 Bacteria 2806
38 Ga0075364_10019730 3300006051 Bacteria 4234
39 Ga0075364_10039236 3300006051 Bacteria 3069
40 Ga0075364_10079460 3300006051 Bacteria 2167
41 Ga0075367_10038937 3300006178 Bacteria 2770
42 Ga0075367_10085988 3300006178 Bacteria 1908
43 Ga0075370_10026834 3300006353 Bacteria 3192
44 Ga0075370_10034109 3300006353 Bacteria 2853
45 Ga0075370_10143542 3300006353 Bacteria 1396
46 Ga0075431_100671875 3300006847 Bacteria 1015
47 Ga0105239_10056947 3300010375 Bacteria 4287
48 Ga0157380_10683127 3300014326 Bacteria 1029
49 Ga0207684_10010865 3300025910 Bacteria 7989
50 Ga0207684_10070569 3300025910 Bacteria 2969
51 Ga0207684_10137330 3300025910 Bacteria 2100
52 Ga0207646_10012784 3300025922 Bacteria 8051
53 Ga0207646_10017838 3300025922 Bacteria 6630
54 Ga0207689_10555126 3300025942 Bacteria 965
55 Ga0209813_10006615 3300027866 Bacteria 2869
56 Ga0268264_10000354 3300028381 Bacteria 69023
57 Ga0307515_10124966 3300028794 Bacteria 2882
58 Ga0307511_10126141 3300030521 Bacteria 1561
59 Ga0307512_10008090 3300030522 Bacteria 10300
60 Ga0316177_1093430 3300030731 Bacteria 4012
61 Ga0307513_10000235 3300031456 Bacteria 80838
62 Ga0307513_10024256 3300031456 Bacteria 7059
63 Ga0307516_10003016 3300031730 Bacteria 21965
64 Ga0307405_10034952 3300031731 Bacteria 2997
65 Ga0307405_10078743 3300031731 Bacteria 2146
66 Ga0307413_10331625 3300031824 Bacteria 1166
67 Ga0307410_10023384 3300031852 Bacteria 3840
68 Ga0307406_10062573 3300031901 Bacteria 2408
69 Ga0307407_10006692 3300031903 Bacteria 5153
70 Ga0307412_10049781 3300031911 Bacteria 2762
71 Ga0307409_100457749 3300031995 Bacteria 1233
72 Ga0307409_100537626 3300031995 Bacteria 1145
73 Ga0307416_100089338 3300032002 Bacteria 2637
74 Ga0307416_100125679 3300032002 Bacteria 2297
75 Ga0307416_100278788 3300032002 Bacteria 1647
76 Ga0307414_10099346 3300032004 Bacteria 2186
77 Ga0307411_10007141 3300032005 Bacteria 5659
78 Ga0307411_10097064 3300032005 Bacteria 2073
79 Ga0307415_100106253 3300032126 Bacteria 2072
80 Ga0307415_100208331 3300032126 Bacteria 1557
81 Ga0307415_100796612 3300032126 Bacteria 862
82 Ga0373951_0001144 3300035091 Bacteria 7026
83 Ga0395899_0019750 3300037312 Bacteria 5116
84 Ga0436364_0151881 3300037853 Bacteria 1519
85 Ga0436364_1378673 3300037853 Bacteria 5254
86 Ga0436365_1759214 3300039437 Bacteria 2012
87 Ga0466972_0001208 3300044658 Bacteria 12437
88 Ga0466972_0008788 3300044658 Bacteria 5068
89 Ga0466965_0002874 3300044683 Bacteria 7427
90 Ga0466965_0015954 3300044683 Bacteria 3569
91 Ga0466957_0596751 3300044842 Bacteria 773
92 Ga0496126_0342215 3300048929 Bacteria 1225
93 Ga0501031_0111724 3300049568 Bacteria 1784
94 Ga0501031_0123963 3300049568 Bacteria 1688
95 Ga0501033_0192780 3300049570 Bacteria 1458
96 Ga0501034_0483899 3300049571 Bacteria 1153
97 Ga0501036_0026610 3300049572 Bacteria 4885
98 Ga0501036_0083936 3300049572 Bacteria 2693
99 Ga0501037_0013266 3300049573 Bacteria 6072
100 Ga0501037_0033463 3300049573 Bacteria 3796
101 Ga0501037_0313745 3300049573 Bacteria 1087
102 Ga0501038_0133076 3300049574 Bacteria 2039
103 Ga0501039_0015376 3300049575 Bacteria 5858
104 Ga0501039_0067565 3300049575 Bacteria 2776
105 Ga0501039_0127576 3300049575 Bacteria 1996
106 Ga0501039_0153805 3300049575 Bacteria 1807
107 Ga0501040_0023119 3300049576 Bacteria 4166
108 Ga0501040_0069742 3300049576 Bacteria 2425
109 Ga0501040_0763076 3300049576 Bacteria 700
110 Ga0501041_0024660 3300049577 Bacteria 3610
111 Ga0501041_0079800 3300049577 Bacteria 2014
112 Ga0501041_0325958 3300049577 Bacteria 969
113 Ga0501042_0068067 3300049578 Bacteria 2546
114 Ga0501042_0089176 3300049578 Bacteria 2213
115 Ga0501042_0507658 3300049578 Bacteria 875
116 Ga0501043_0280560 3300049579 Bacteria 1277
117 Ga0501043_0657380 3300049579 Bacteria 769
118 Ga0501046_0029257 3300049580 Bacteria 4479
119 Ga0501046_0158448 3300049580 Bacteria 1704
120 Ga0501048_0018276 3300049582 Bacteria 5157
121 Ga0501048_0049478 3300049582 Bacteria 2995
122 Ga0501069_0096794 3300049585 Bacteria 1672
123 Ga0501069_0289932 3300049585 Bacteria 959
124 Ga0501069_0464910 3300049585 Bacteria 753
125 Ga0501070_0164060 3300049586 Bacteria 1831
126 Ga0501070_0172505 3300049586 Bacteria 1781
127 Ga0501071_0006792 3300049587 Bacteria 7453
128 Ga0501071_0111825 3300049587 Bacteria 2019
129 Ga0501072_0106208 3300049588 Bacteria 2233
130 Ga0501073_0528511 3300049589 Bacteria 815
131 Ga0501074_0012261 3300049590 Bacteria 6232
132 Ga0501074_0054492 3300049590 Bacteria 2884
133 Ga0501074_0074869 3300049590 Bacteria 2431
134 Ga0501075_0296248 3300049591 Bacteria 1232
135 Ga0501075_0554101 3300049591 Bacteria 877
136 Ga0501076_0100925 3300049592 Bacteria 2325
137 Ga0501076_0202885 3300049592 Bacteria 1620
138 Ga0501076_0283174 3300049592 Bacteria 1358
139 Ga0501077_0042669 3300049593 Bacteria 2884
140 Ga0501079_0460128 3300049741 Bacteria 999
141 Ga0501080_0217033 3300049742 Bacteria 1751
142 Ga0501080_0337304 3300049742 Bacteria 1363
143 Ga0501083_0271701 3300049744 Bacteria 1103
144 Ga0501035_0119663 3300049822 Bacteria 2303
145 Ga0501035_0290243 3300049822 Bacteria 1381
146 Ga0501044_0372784 3300049823 Bacteria 1344
147 Ga0501044_0583115 3300049823 Bacteria 1012
148 Ga0501045_0016634 3300049824 Bacteria 5225
149 nmdc:mga03n38_66299_c1 3300050490 Bacteria 1658
150 nmdc:mga00v17_231658_c1 3300050491 Bacteria 1197
151 nmdc:mga00v17_528127_c1 3300050491 Bacteria 764
152 nmdc:mga0yw44_10858_c1 3300050492 Bacteria 4669
153 nmdc:mga0yw44_193973_c1 3300050492 Bacteria 1340
154 nmdc:mga0yw44_235240_c1 3300050492 Bacteria 1217
155 nmdc:mga0yw44_237368_c1 3300050492 Bacteria 1211
156 nmdc:mga0yw44_287571_c1 3300050492 Bacteria 1100
157 nmdc:mga0yw44_84876_c1 3300050492 Bacteria 1991
158 nmdc:mga0yw44_8692_c1 3300050492 Bacteria 5077
159 nmdc:mga04h51_2048_c1 3300050495 Bacteria 4728
160 nmdc:mga07m45_104732_c1 3300050496 Bacteria 1627
161 nmdc:mga07m45_59776_c1 3300050496 Bacteria 2156
162 nmdc:mga07m45_96825_c1 3300050496 Bacteria 1693
163 nmdc:mga06r32_154114_c1 3300050510 Bacteria 2277
164 Ga0500556_0000563 3300053104 Bacteria 24789
165 Ga0500593_001138 3300053117 Bacteria 9585
166 Ga0501084_0045777 3300054114 Bacteria 3662
167 Ga0501084_0186956 3300054114 Bacteria 1748
168 Ga0501082_0103239 3300060353 Bacteria 2466
169 Ga0501082_0121279 3300060353 Bacteria 2266
170 Ga0530510_0256303 3300061734 Bacteria 1304
171 2508678573 2508501039 Bacteria 9978592
172 2643826731 2643221561 Bacteria 4984412
173 2644534087 2643221696 Bacteria 5431823
174 2645722089 2643221961 Bacteria 3919167
175 2645724931 2643221962 Bacteria 3874254
176 2676490671 2675903060 Bacteria 10051191
177 2731906467 2731639228 Bacteria 4187555
178 2774392238 2773857762 Bacteria 5971770
179 2795794164 2795385472 Bacteria 6627535
180 2809028798 2808606394 Bacteria 6248540
181 2809196045 2808606439 Bacteria 5952208
182 2812351820 2811994878 Bacteria 5992952
183 2855682126 2855676851 Bacteria 7063653
184 2857293605 2857288857 Bacteria 7189066
185 2858851222 2858848962 Bacteria 6963058
186 2858870621 2858868258 Bacteria 7683772
187 2858887664 2858882152 Bacteria 7230291
188 2858893498 2858888857 Bacteria 7060307
189 2858896969 2858895516 Bacteria 7378898
190 2867302854 2867302475 Bacteria 7087181
191 2867318042 2867312974 Bacteria 7058875
192 2867324230 2867319477 Bacteria 7069771
193 2868090282 2868088558 Bacteria 7609351
194 2869050995 2869048445 Bacteria 6875584
195 2869062051 2869061728 Bacteria 7112407
196 2869068989 2869068681 Bacteria 7205615
197 2880491700 2880489317 Bacteria 7096270
198 2880500642 2880495981 Bacteria 7340502
199 2891970544 2891968417 Bacteria 5821697
200 2895429936 2895427314 Bacteria 13147766
201 2929229135 2929226422 Bacteria 7248583
202 8002779690 8002775197 Bacteria 10728764
203 8002781207 8002775197 Bacteria 10728764
204 8053947542 8053945823 Bacteria 8962862
205 8054709267 8054704163 Bacteria 7247792
206 8054740328 8054734606 Bacteria 6947278
207 8055069521 8055066027 Bacteria 9479577
208 8055180050 8055172936 Bacteria 9305943
209 8056585161 8056579771 Bacteria 5840325
210 Ga0501031_0015681
211 JGI25406J46586_10064914
212 Ga0068869_100560996
213 Ga0070708_100487425
214 Ga0070708_100818284
215 Ga0070706_100541895
216 Ga0070707_100022122
217 Ga0070698_100026668
218 Ga0070698_100302386
219 Ga0070698_100822067
220 Ga0070699_100014618
221 Ga0070697_100009362
222 Ga0070697_100030634
223 Ga0070697_100331239
224 Ga0070702_100461081
225 Ga0068860_100000713
226 Ga0081455_10000427
227 Ga0081455_10005840
228 Ga0081455_10008150
229 Ga0081538_10002048
230 Ga0081539_10029759
231 Ga0081539_10038472
232 Ga0070717_10106310
233 Ga0070717_10769361
234 Ga0075365_10013741
235 Ga0075365_10042477
236 Ga0075365_10082059
237 Ga0075365_10116562
238 Ga0075365_10142244
239 Ga0075365_10166164
240 Ga0075365_10201072
241 Ga0075365_10286755
242 Ga0075365_10303732
243 Ga0075368_10004185
244 Ga0075368_10073621
245 Ga0075363_100013960
246 Ga0075363_100030135
247 Ga0075364_10019730
248 Ga0075364_10039236
249 Ga0075364_10079460
250 Ga0075367_10038937
251 Ga0075367_10085988
252 Ga0075370_10026834
253 Ga0075370_10034109
254 Ga0075370_10143542
255 Ga0075431_100671875
256 Ga0105239_10056947
257 Ga0157380_10683127
258 Ga0207684_10010865
259 Ga0207684_10070569
260 Ga0207684_10137330
261 Ga0207646_10012784
262 Ga0207646_10017838
263 Ga0207689_10555126
264 Ga0209813_10006615
265 Ga0268264_10000354
266 Ga0307515_10124966
267 Ga0307511_10126141
268 Ga0307512_10008090
269 Ga0316177_1093430
270 Ga0307513_10000235
271 Ga0307513_10024256
272 Ga0307516_10003016
273 Ga0307405_10034952
274 Ga0307405_10078743
275 Ga0307413_10331625
276 Ga0307410_10023384
277 Ga0307406_10062573
278 Ga0307407_10006692
279 Ga0307412_10049781
280 Ga0307409_100457749
281 Ga0307409_100537626
282 Ga0307416_100089338
283 Ga0307416_100125679
284 Ga0307416_100278788
285 Ga0307414_10099346
286 Ga0307411_10007141
287 Ga0307411_10097064
288 Ga0307415_100106253
289 Ga0307415_100208331
290 Ga0307415_100796612
291 Ga0373951_0001144
292 Ga0395899_0019750
293 Ga0436364_0151881
294 Ga0436364_1378673
295 Ga0436365_1759214
296 Ga0466972_0001208
297 Ga0466972_0008788
298 Ga0466965_0002874
299 Ga0466965_0015954
300 Ga0466957_0596751
301 Ga0496126_0342215
302 Ga0501031_0111724
303 Ga0501031_0123963
304 Ga0501033_0192780
305 Ga0501034_0483899
306 Ga0501036_0026610
307 Ga0501036_0083936
308 Ga0501037_0013266
309 Ga0501037_0033463
310 Ga0501037_0313745
311 Ga0501038_0133076
312 Ga0501039_0015376
313 Ga0501039_0067565
314 Ga0501039_0127576
315 Ga0501039_0153805
316 Ga0501040_0023119
317 Ga0501040_0069742
318 Ga0501040_0763076
319 Ga0501041_0024660
320 Ga0501041_0079800
321 Ga0501041_0325958
322 Ga0501042_0068067
323 Ga0501042_0089176
324 Ga0501042_0507658
325 Ga0501043_0280560
326 Ga0501043_0657380
327 Ga0501046_0029257
328 Ga0501046_0158448
329 Ga0501048_0018276
330 Ga0501048_0049478
331 Ga0501069_0096794
332 Ga0501069_0289932
333 Ga0501069_0464910
334 Ga0501070_0164060
335 Ga0501070_0172505
336 Ga0501071_0006792
337 Ga0501071_0111825
338 Ga0501072_0106208
339 Ga0501073_0528511
340 Ga0501074_0012261
341 Ga0501074_0054492
342 Ga0501074_0074869
343 Ga0501075_0296248
344 Ga0501075_0554101
345 Ga0501076_0100925
346 Ga0501076_0202885
347 Ga0501076_0283174
348 Ga0501077_0042669
349 Ga0501079_0460128
350 Ga0501080_0217033
351 Ga0501080_0337304
352 Ga0501083_0271701
353 Ga0501035_0119663
354 Ga0501035_0290243
355 Ga0501044_0372784
356 Ga0501044_0583115
357 Ga0501045_0016634
358 nmdc:mga03n38_66299_c1
359 nmdc:mga00v17_231658_c1
360 nmdc:mga00v17_528127_c1
361 nmdc:mga0yw44_10858_c1
362 nmdc:mga0yw44_193973_c1
363 nmdc:mga0yw44_235240_c1
364 nmdc:mga0yw44_237368_c1
365 nmdc:mga0yw44_287571_c1
366 nmdc:mga0yw44_84876_c1
367 nmdc:mga0yw44_8692_c1
368 nmdc:mga04h51_2048_c1
369 nmdc:mga07m45_104732_c1
370 nmdc:mga07m45_59776_c1
371 nmdc:mga07m45_96825_c1
372 nmdc:mga06r32_154114_c1
373 Ga0500556_0000563
374 Ga0500593_001138
375 Ga0501084_0045777
376 Ga0501084_0186956
377 Ga0501082_0103239
378 Ga0501082_0121279
379 Ga0530510_0256303
380 2508678573
381 2643826731
382 2644534087
383 2645722089
384 2645724931
385 2676490671
386 2731906467
387 2774392238
388 2795794164
389 2809028798
390 2809196045
391 2812351820
392 2855682126
393 2857293605
394 2858851222
395 2858870621
396 2858887664
397 2858893498
398 2858896969
399 2867302854
400 2867318042
401 2867324230
402 2868090282
403 2869050995
404 2869062051
405 2869068989
406 2880491700
407 2880500642
408 2891970544
409 2895429936
410 2929229135
411 8002779690
412 8002781207
413 8053947542
414 8054709267
415 8054740328
416 8055069521
417 8055180050
418 8056585161

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00196

GerE

Bacterial regulatory proteins, luxR family

170

224

0.96

PF00072

Response_reg

Response regulator receiver domain

17

116

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
4wu4-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 22bp dna 0.9631 147 213
4wul-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 26bp dna 0.9621 149 213
4wsz-assembly1.cif.gz_B crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9618 147 213
7x1k-assembly1.cif.gz_B crystal structure of the flagellar expression regulator degu from listeria monocytogenes 0.9611 147 213
7ve5-assembly1.cif.gz_B c-terminal domain of vrar 0.9554 147 213
ID Description Score Start End Superfamily
4hyeB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9661 151 213 1.10.10.10
4if4B02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9538 147 213 1.10.10.10
4if4D02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9509 145 213 1.10.10.10
1fseC00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9487 151 213 1.10.10.10
4if4C02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9481 145 213 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A538JGH7-F1-model_v4 Response regulator 0.9887 2 134 GO:0000160
GO:0004016
GO:0009190
AF-A0A538J270-F1-model_v4 Response regulator 0.9879 1 142 GO:0000160
GO:0004016
GO:0009190
AF-A0A7Y7IIA2-F1-model_v4 Response regulator transcription factor 0.985 1 75 GO:0000160
AF-A0A3N0DSD5-F1-model_v4 Response regulator 0.9811 2 139 GO:0000160
GO:0004016
GO:0009190
AF-A9WTE0-F1-model_v4 Two-component response regulator 0.9793 1 89 GO:0000160

Map