F319248

General Info

Members Datasets Scaffolds Average Seq Length
209 127 416 209

Family's Representative Sequence

Representative Sequence 3300031456|Ga0307513_10202725|Ga0307513_102027252
Length 196
Sequence VTGANSPKQKQKPTIYVVDDDDGMRHALTVLMTTVGYHAVAFARPTDFLAQYDPNEPSCVVLDVRMPEMSGLEVQQQLNRAGSMLPVILVTGHGDIPMAVQAMKDGAFDFLQKPFRDQELLDRINGALKQDAEISLTPREREVMTLVVDGRANKVIAIDLGLSERTVEIHRSNVMEKMGARSVAHLVKMHLALNGE

Samples

Sample ID Description Type Environment
1 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
22 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
23 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
24 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
28 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
29 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
30 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
31 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
35 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
36 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
37 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
38 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
43 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
46 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
72 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
73 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
74 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
75 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
76 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
77 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
78 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
79 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
80 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
81 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
82 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
83 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
84 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
85 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
86 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
87 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
88 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
89 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
90 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
91 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
92 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
93 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
94 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
95 3300042001 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z081617_5542 Metagenome Rhizosphere
96 3300042003 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821FE14Z081617_5551 Metagenome Rhizosphere
97 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
98 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
99 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
100 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
101 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
102 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
103 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
104 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
105 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
106 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
107 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
108 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
109 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
110 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
111 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
112 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
113 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
114 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
115 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
116 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
117 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
118 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
119 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
120 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
121 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
122 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
123 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
124 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
125 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
126 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
127 3300060346 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.52
Metatranscriptomes 0.48
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.31
Nodule 0
Rhizoplane 3.83
Rhizosphere 83.73
Stem 0
Stem Tuber 0
Unclassified 8.61

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307513_10202725 3300031456 Bacteria 1823
2 JGI25406J46586_10039463 3300003203 Bacteria 1683
3 Ga0070683_100007258 3300005329 Bacteria 9348
4 Ga0070670_100297558 3300005331 Bacteria 1411
5 Ga0070666_10326660 3300005335 Unclassified 1095
6 Ga0070680_100005794 3300005336 Bacteria 9377
7 Ga0070680_100006834 3300005336 Bacteria 8696
8 Ga0070661_100150295 3300005344 Bacteria 1760
9 Ga0070661_100175464 3300005344 Bacteria 1629
10 Ga0070671_100064505 3300005355 Unclassified 3050
11 Ga0070671_100106519 3300005355 Bacteria 2354
12 Ga0070671_100636011 3300005355 Bacteria 923
13 Ga0070667_100018202 3300005367 Bacteria 5825
14 Ga0070709_10587515 3300005434 Bacteria 856
15 Ga0070709_10778619 3300005434 Bacteria 749
16 Ga0070714_100144486 3300005435 Bacteria 2139
17 Ga0070713_100993413 3300005436 Bacteria 809
18 Ga0070710_10540787 3300005437 Bacteria 803
19 Ga0070681_10011087 3300005458 Bacteria 8917
20 Ga0070681_10041836 3300005458 Bacteria 4593
21 Ga0070681_10119799 3300005458 Bacteria 2568
22 Ga0070706_100374633 3300005467 Unclassified 1326
23 Ga0070679_100019641 3300005530 Bacteria 6575
24 Ga0070679_100023206 3300005530 Bacteria 6072
25 Ga0070679_100081054 3300005530 Bacteria 3235
26 Ga0070679_100081570 3300005530 Bacteria 3224
27 Ga0070679_100266713 3300005530 Bacteria 1667
28 Ga0070684_100021911 3300005535 Bacteria 5323
29 Ga0070672_100138313 3300005543 Bacteria 2007
30 Ga0070665_100000917 3300005548 Bacteria 37833
31 Ga0070665_100009181 3300005548 Bacteria 10015
32 Ga0068855_100019791 3300005563 Bacteria 8085
33 Ga0068855_100308292 3300005563 Bacteria 1752
34 Ga0068855_100961912 3300005563 Bacteria 899
35 Ga0070664_100013480 3300005564 Bacteria 6657
36 Ga0068859_100000166 3300005617 Bacteria 63448
37 Ga0068859_100250080 3300005617 Bacteria 1863
38 Ga0068861_100073337 3300005719 Bacteria 2659
39 Ga0068861_100116074 3300005719 Bacteria 2152
40 Ga0068861_100136868 3300005719 Bacteria 1994
41 Ga0068863_100007763 3300005841 Bacteria 10490
42 Ga0068858_100000257 3300005842 Bacteria 56818
43 Ga0068860_100083840 3300005843 Unclassified 3032
44 Ga0068862_100090886 3300005844 Bacteria 2658
45 Ga0081455_10000519 3300005937 Bacteria 50012
46 Ga0081455_10001789 3300005937 Bacteria 25970
47 Ga0081539_10000028 3300005985 Bacteria 328182
48 Ga0081539_10000066 3300005985 Bacteria 246391
49 Ga0097621_100097298 3300006237 Bacteria 2471
50 Ga0097620_100000166 3300006931 Bacteria 63448
51 Ga0097620_100250081 3300006931 Bacteria 1863
52 Ga0105250_10102957 3300009092 Unclassified 1166
53 Ga0105240_10000878 3300009093 Bacteria 54051
54 Ga0105240_10004527 3300009093 Bacteria 21123
55 Ga0105240_10022078 3300009093 Bacteria 8447
56 Ga0105240_10109306 3300009093 Bacteria 3348
57 Ga0105240_10126457 3300009093 Bacteria 3071
58 Ga0105240_10129890 3300009093 Bacteria 3023
59 Ga0105245_10465958 3300009098 Bacteria 1274
60 Ga0105247_10000180 3300009101 Bacteria 61679
61 Ga0105247_10045895 3300009101 Bacteria 2682
62 Ga0105247_10184258 3300009101 Bacteria 1395
63 Ga0105237_10012997 3300009545 Bacteria 8742
64 Ga0105237_10236890 3300009545 Bacteria 1826
65 Ga0105238_10122229 3300009551 Bacteria 2583
66 Ga0105238_10574927 3300009551 Unclassified 1133
67 Ga0105238_10745341 3300009551 Bacteria 993
68 Ga0105249_10050268 3300009553 Bacteria 3801
69 Ga0105239_10041766 3300010375 Bacteria 5025
70 Ga0105239_10343809 3300010375 Bacteria 1684
71 Ga0157369_10002965 3300013105 Bacteria 20299
72 Ga0157369_10031241 3300013105 Bacteria 5866
73 Ga0157369_10190419 3300013105 Bacteria 2156
74 Ga0157369_10668460 3300013105 Bacteria 1070
75 Ga0157374_10645464 3300013296 Bacteria 1070
76 Ga0157378_10345690 3300013297 Bacteria 1452
77 Ga0157372_10254499 3300013307 Bacteria 2039
78 Ga0157372_10297223 3300013307 Bacteria 1878
79 Ga0157372_10955864 3300013307 Unclassified 993
80 Ga0163163_10000584 3300014325 Bacteria 32128
81 Ga0163163_10074499 3300014325 Bacteria 3387
82 Ga0163163_10144035 3300014325 Bacteria 2426
83 Ga0157379_10000196 3300014968 Bacteria 46759
84 Ga0157379_10066671 3300014968 Bacteria 3218
85 Ga0157379_10285143 3300014968 Bacteria 1503
86 Ga0207692_10435730 3300025898 Bacteria 823
87 Ga0207642_10355959 3300025899 Bacteria 865
88 Ga0207710_10000237 3300025900 Bacteria 47413
89 Ga0207710_10023774 3300025900 Bacteria 2634
90 Ga0207680_10306504 3300025903 Bacteria 1108
91 Ga0207707_10008427 3300025912 Bacteria 8941
92 Ga0207707_10031505 3300025912 Bacteria 4639
93 Ga0207707_10107589 3300025912 Bacteria 2438
94 Ga0207695_10029885 3300025913 Bacteria 6011
95 Ga0207695_10039805 3300025913 Bacteria 5049
96 Ga0207695_10077518 3300025913 Bacteria 3375
97 Ga0207695_10079026 3300025913 Bacteria 3335
98 Ga0207695_10107718 3300025913 Bacteria 2772
99 Ga0207695_10249416 3300025913 Bacteria 1675
100 Ga0207671_10177615 3300025914 Bacteria 1656
101 Ga0207671_10233346 3300025914 Bacteria 1444
102 Ga0207660_10045125 3300025917 Bacteria 3104
103 Ga0207660_10172929 3300025917 Bacteria 1673
104 Ga0207649_10038648 3300025920 Bacteria 2891
105 Ga0207652_10020670 3300025921 Bacteria 5425
106 Ga0207652_10052755 3300025921 Bacteria 3492
107 Ga0207652_10072992 3300025921 Bacteria 2984
108 Ga0207652_10080239 3300025921 Bacteria 2852
109 Ga0207652_10364123 3300025921 Bacteria 1305
110 Ga0207694_10406108 3300025924 Unclassified 1133
111 Ga0207650_10210212 3300025925 Bacteria 1562
112 Ga0207644_10104243 3300025931 Bacteria 2135
113 Ga0207691_10134575 3300025940 Bacteria 2181
114 Ga0207689_10191837 3300025942 Bacteria 1686
115 Ga0207661_10349178 3300025944 Bacteria 1334
116 Ga0207679_10148730 3300025945 Bacteria 1903
117 Ga0207667_10009028 3300025949 Bacteria 11791
118 Ga0207667_10054863 3300025949 Bacteria 4191
119 Ga0207667_10266363 3300025949 Bacteria 1752
120 Ga0207667_10435550 3300025949 Bacteria 1333
121 Ga0207712_10020467 3300025961 Bacteria 4332
122 Ga0207712_10022572 3300025961 Bacteria 4145
123 Ga0207658_10001263 3300025986 Bacteria 19985
124 Ga0207703_10076829 3300026035 Unclassified 2771
125 Ga0207641_10001882 3300026088 Bacteria 20148
126 Ga0207641_10734755 3300026088 Bacteria 974
127 Ga0207675_100027407 3300026118 Bacteria 5306
128 Ga0207675_100047245 3300026118 Bacteria 4020
129 Ga0207675_100082693 3300026118 Bacteria 3011
130 Ga0268266_10000607 3300028379 Bacteria 48767
131 Ga0268266_10047411 3300028379 Bacteria 3681
132 Ga0268266_10860455 3300028379 Bacteria 876
133 Ga0268264_10052793 3300028381 Unclassified 3390
134 Ga0265334_10002616 3300028573 Bacteria 8392
135 Ga0265318_10002542 3300028577 Bacteria 9678
136 Ga0307515_10017961 3300028794 Bacteria 12842
137 Ga0265338_10048184 3300028800 Bacteria 3880
138 Ga0265332_10005356 3300031238 Bacteria 5925
139 Ga0265320_10090508 3300031240 Bacteria 1417
140 Ga0265325_10038580 3300031241 Bacteria 2520
141 Ga0265329_10002336 3300031242 Bacteria 8678
142 Ga0265339_10064986 3300031249 Bacteria 1957
143 Ga0265331_10042753 3300031250 Bacteria 2197
144 Ga0307513_10037457 3300031456 Bacteria 5398
145 Ga0307509_10000022 3300031507 Bacteria 247822
146 Ga0265313_10021770 3300031595 Bacteria 3497
147 Ga0265313_10098559 3300031595 Bacteria 1300
148 Ga0307508_10080832 3300031616 Bacteria 2832
149 Ga0307508_10321216 3300031616 Bacteria 1140
150 Ga0265342_10005490 3300031712 Bacteria 9645
151 Ga0307409_100441741 3300031995 Bacteria 1253
152 Ga0307409_100708827 3300031995 Bacteria 1006
153 Ga0307411_10010572 3300032005 Bacteria 4929
154 Ga0307411_10605871 3300032005 Bacteria 942
155 Ga0307415_100197553 3300032126 Bacteria 1593
156 Ga0307415_100466828 3300032126 Bacteria 1095
157 Ga0307510_10000008 3300033180 Bacteria 433990
158 Ga0373936_0008008 3300035113 Bacteria 3971
159 Ga0373955_0386760 3300035172 Bacteria 849
160 Ga0373933_0071794 3300035724 Bacteria 2108
161 Ga0373937_0073696 3300036401 Bacteria 3150
162 Ga0395898_0017956 3300037466 Bacteria 7218
163 Ga0451807_2339932 3300041486 Bacteria 1071
164 Ga0439441_021972 3300042001 Bacteria 1182
165 Ga0439443_000987 3300042003 Bacteria 2924
166 Ga0450908_037517 3300042184 Bacteria 840
167 Ga0439460_0002791 3300042461 Bacteria 4204
168 Ga0466969_0082481 3300044656 Bacteria 1532
169 Ga0466972_0142044 3300044658 Bacteria 1130
170 Ga0466966_0195331 3300044684 Bacteria 1225
171 Ga0466966_0229976 3300044684 Unclassified 1119
172 Ga0466960_0198568 3300044901 Bacteria 1095
173 Ga0466959_0013963 3300045049 Bacteria 5830
174 Ga0466959_0175699 3300045049 Bacteria 1500
175 Ga0466959_0181650 3300045049 Bacteria 1471
176 Ga0495580_0106738 3300046472 Bacteria 1945
177 Ga0495643_0060350 3300046522 Bacteria 2013
178 Ga0495648_0260940 3300046524 Bacteria 831
179 Ga0495587_0028122 3300046536 Bacteria 3422
180 Ga0495622_0106548 3300046557 Bacteria 1284
181 Ga0495669_0266025 3300046684 Bacteria 824
182 Ga0495602_0014971 3300048088 Bacteria 7846
183 Ga0496102_0004400 3300048905 Bacteria 11903
184 Ga0496102_0077990 3300048905 Unclassified 3050
185 Ga0496103_0101592 3300048906 Unclassified 1820
186 Ga0496103_0259887 3300048906 Bacteria 1117
187 Ga0496107_0076804 3300048910 Unclassified 2433
188 Ga0496112_0866593 3300048915 Bacteria 826
189 Ga0496115_0574114 3300048918 Bacteria 899
190 Ga0496118_0023453 3300048921 Bacteria 5359
191 Ga0496119_0156579 3300048922 Unclassified 1216
192 Ga0496121_0004603 3300048924 Bacteria 18373
193 Ga0496121_0047949 3300048924 Bacteria 3640
194 Ga0496124_0309050 3300048927 Unclassified 1138
195 Ga0496125_0056098 3300048928 Unclassified 3202
196 Ga0496126_0001051 3300048929 Bacteria 46698
197 Ga0496126_0001386 3300048929 Bacteria 38326
198 Ga0496126_0173088 3300048929 Unclassified 1838
199 Ga0500583_0038007 3300053092 Bacteria 2165
200 Ga0500583_0127413 3300053092 Bacteria 1261
201 Ga0500641_0034544 3300053096 Bacteria 2013
202 Ga0500641_0046702 3300053096 Bacteria 1769
203 Ga0500604_0037350 3300053151 Bacteria 1452
204 Ga0500616_0026927 3300053153 Bacteria 3177
205 Ga0500637_0008118 3300053178 Bacteria 5281
206 Ga0500637_0061130 3300053178 Bacteria 2157
207 Ga0500637_0132920 3300053178 Bacteria 1442
208 Ga0587111_0022336 3300060346 Bacteria 1228
209 Ga0307513_10202725
210 JGI25406J46586_10039463
211 Ga0070683_100007258
212 Ga0070670_100297558
213 Ga0070666_10326660
214 Ga0070680_100005794
215 Ga0070680_100006834
216 Ga0070661_100150295
217 Ga0070661_100175464
218 Ga0070671_100064505
219 Ga0070671_100106519
220 Ga0070671_100636011
221 Ga0070667_100018202
222 Ga0070709_10587515
223 Ga0070709_10778619
224 Ga0070714_100144486
225 Ga0070713_100993413
226 Ga0070710_10540787
227 Ga0070681_10011087
228 Ga0070681_10041836
229 Ga0070681_10119799
230 Ga0070706_100374633
231 Ga0070679_100019641
232 Ga0070679_100023206
233 Ga0070679_100081054
234 Ga0070679_100081570
235 Ga0070679_100266713
236 Ga0070684_100021911
237 Ga0070672_100138313
238 Ga0070665_100000917
239 Ga0070665_100009181
240 Ga0068855_100019791
241 Ga0068855_100308292
242 Ga0068855_100961912
243 Ga0070664_100013480
244 Ga0068859_100000166
245 Ga0068859_100250080
246 Ga0068861_100073337
247 Ga0068861_100116074
248 Ga0068861_100136868
249 Ga0068863_100007763
250 Ga0068858_100000257
251 Ga0068860_100083840
252 Ga0068862_100090886
253 Ga0081455_10000519
254 Ga0081455_10001789
255 Ga0081539_10000028
256 Ga0081539_10000066
257 Ga0097621_100097298
258 Ga0097620_100000166
259 Ga0097620_100250081
260 Ga0105250_10102957
261 Ga0105240_10000878
262 Ga0105240_10004527
263 Ga0105240_10022078
264 Ga0105240_10109306
265 Ga0105240_10126457
266 Ga0105240_10129890
267 Ga0105245_10465958
268 Ga0105247_10000180
269 Ga0105247_10045895
270 Ga0105247_10184258
271 Ga0105237_10012997
272 Ga0105237_10236890
273 Ga0105238_10122229
274 Ga0105238_10574927
275 Ga0105238_10745341
276 Ga0105249_10050268
277 Ga0105239_10041766
278 Ga0105239_10343809
279 Ga0157369_10002965
280 Ga0157369_10031241
281 Ga0157369_10190419
282 Ga0157369_10668460
283 Ga0157374_10645464
284 Ga0157378_10345690
285 Ga0157372_10254499
286 Ga0157372_10297223
287 Ga0157372_10955864
288 Ga0163163_10000584
289 Ga0163163_10074499
290 Ga0163163_10144035
291 Ga0157379_10000196
292 Ga0157379_10066671
293 Ga0157379_10285143
294 Ga0207692_10435730
295 Ga0207642_10355959
296 Ga0207710_10000237
297 Ga0207710_10023774
298 Ga0207680_10306504
299 Ga0207707_10008427
300 Ga0207707_10031505
301 Ga0207707_10107589
302 Ga0207695_10029885
303 Ga0207695_10039805
304 Ga0207695_10077518
305 Ga0207695_10079026
306 Ga0207695_10107718
307 Ga0207695_10249416
308 Ga0207671_10177615
309 Ga0207671_10233346
310 Ga0207660_10045125
311 Ga0207660_10172929
312 Ga0207649_10038648
313 Ga0207652_10020670
314 Ga0207652_10052755
315 Ga0207652_10072992
316 Ga0207652_10080239
317 Ga0207652_10364123
318 Ga0207694_10406108
319 Ga0207650_10210212
320 Ga0207644_10104243
321 Ga0207691_10134575
322 Ga0207689_10191837
323 Ga0207661_10349178
324 Ga0207679_10148730
325 Ga0207667_10009028
326 Ga0207667_10054863
327 Ga0207667_10266363
328 Ga0207667_10435550
329 Ga0207712_10020467
330 Ga0207712_10022572
331 Ga0207658_10001263
332 Ga0207703_10076829
333 Ga0207641_10001882
334 Ga0207641_10734755
335 Ga0207675_100027407
336 Ga0207675_100047245
337 Ga0207675_100082693
338 Ga0268266_10000607
339 Ga0268266_10047411
340 Ga0268266_10860455
341 Ga0268264_10052793
342 Ga0265334_10002616
343 Ga0265318_10002542
344 Ga0307515_10017961
345 Ga0265338_10048184
346 Ga0265332_10005356
347 Ga0265320_10090508
348 Ga0265325_10038580
349 Ga0265329_10002336
350 Ga0265339_10064986
351 Ga0265331_10042753
352 Ga0307513_10037457
353 Ga0307509_10000022
354 Ga0265313_10021770
355 Ga0265313_10098559
356 Ga0307508_10080832
357 Ga0307508_10321216
358 Ga0265342_10005490
359 Ga0307409_100441741
360 Ga0307409_100708827
361 Ga0307411_10010572
362 Ga0307411_10605871
363 Ga0307415_100197553
364 Ga0307415_100466828
365 Ga0307510_10000008
366 Ga0373936_0008008
367 Ga0373955_0386760
368 Ga0373933_0071794
369 Ga0373937_0073696
370 Ga0395898_0017956
371 Ga0451807_2339932
372 Ga0439441_021972
373 Ga0439443_000987
374 Ga0450908_037517
375 Ga0439460_0002791
376 Ga0466969_0082481
377 Ga0466972_0142044
378 Ga0466966_0195331
379 Ga0466966_0229976
380 Ga0466960_0198568
381 Ga0466959_0013963
382 Ga0466959_0175699
383 Ga0466959_0181650
384 Ga0495580_0106738
385 Ga0495643_0060350
386 Ga0495648_0260940
387 Ga0495587_0028122
388 Ga0495622_0106548
389 Ga0495669_0266025
390 Ga0495602_0014971
391 Ga0496102_0004400
392 Ga0496102_0077990
393 Ga0496103_0101592
394 Ga0496103_0259887
395 Ga0496107_0076804
396 Ga0496112_0866593
397 Ga0496115_0574114
398 Ga0496118_0023453
399 Ga0496119_0156579
400 Ga0496121_0004603
401 Ga0496121_0047949
402 Ga0496124_0309050
403 Ga0496125_0056098
404 Ga0496126_0001051
405 Ga0496126_0001386
406 Ga0496126_0173088
407 Ga0500583_0038007
408 Ga0500583_0127413
409 Ga0500641_0034544
410 Ga0500641_0046702
411 Ga0500604_0037350
412 Ga0500616_0026927
413 Ga0500637_0008118
414 Ga0500637_0061130
415 Ga0500637_0132920
416 Ga0587111_0022336

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

15

125

0.98

PF00196

GerE

Bacterial regulatory proteins, luxR family

134

190

0.98

PF08281

Sigma70_r4_2

Sigma-70, region 4

134

178

0.94

PF06490

FleQ

Flagellar regulatory protein FleQ

14

129

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
7ve5-assembly1.cif.gz_B c-terminal domain of vrar 0.9371 143 204
1dck-assembly1.cif.gz_A structure of unphosphorylated fixj-n complexed with mn2+ 0.9315 5 123
1ys6-assembly1.cif.gz_B crystal structure of the response regulatory protein prra from mycobacterium tuberculosis 0.9308 8 123
1d5w-assembly1.cif.gz_A phosphorylated fixj receiver domain 0.9284 5 123
1je8-assembly2.cif.gz_E two-component response regulator narl/dna complex: dna bending found in a high affinity site 0.9277 143 201
ID Description Score Start End Superfamily
1zn2A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9837 144 201 1.10.10.10
1yioA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9826 144 201 1.10.10.10
5f64B02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.952 136 203 1.10.10.10
1zn2A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9516 144 201 1.10.10.10
1a04B02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.951 143 201 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A849GUW5-F1-model_v4 Response regulator transcription factor 0.7017 2 189 GO:0000160
GO:0003677
GO:0006355
AF-A0A849GUW5-F1-model_v4 Response regulator transcription factor 0.698 2 189 GO:0000160
GO:0003677
GO:0006355
AF-A0A239ED16-F1-model_v4 Two component transcriptional regulator, LuxR family 0.6797 2 192 GO:0000160
GO:0006355
AF-A0A3D1EVV9-F1-model_v4 DNA-binding response regulator 0.6703 2 203 GO:0000160
GO:0003677
GO:0006355
AF-A0A418VHF5-F1-model_v4 DNA-binding response regulator 0.6572 5 198 GO:0000160
GO:0003677
GO:0006355

Map