F319106

General Info

Members Datasets Scaffolds Average Seq Length
209 104 418 297

Family's Representative Sequence

Representative Sequence 3300013308|Ga0157375_10081090|Ga0157375_100810903
Length 320
Sequence VNETSHVRSAPGQKRDVDGILLLDKPTGWTSNHALQRIKRLFRARKAGHTGSLDPLASGLLPLCLGEATKVSAFLLDADKHYLVTGRLGIKTDTGDADGKIIAQAEVPRADRSTFQQVLEEFHGTMDQVPPMHSALKHEGRRLYELARAGVEVERAPRRITIHALRLEDLHDESFTLDVHCSKGTYVRTLVEDIGERLGSHAHVTALRRLGVGSYTADGMVTMADLEARAEQGLERLDACLLPMDSAAAHWPSLRVGADSAYYLQNGQPVMVPRAPTAGWVRIYGEDASFLGMGCITDDGRVAPKRLVQSRRRAALVGER

Samples

Sample ID Description Type Environment
1 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
2 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
11 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
12 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
15 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
16 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
19 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
20 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
21 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
22 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
23 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
24 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
25 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
26 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
30 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
31 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
32 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
38 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
39 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
40 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
41 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
61 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
62 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
63 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
64 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
65 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
66 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
67 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
68 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
69 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
70 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
71 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
72 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
73 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
74 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
75 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
76 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
77 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
78 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
79 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
80 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
81 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
82 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
83 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
84 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
85 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
86 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
87 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
88 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
89 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
90 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
91 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
92 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
93 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
94 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
95 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
96 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
97 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
98 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
99 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
101 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
102 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
103 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
104 8002745576 Marinomonas spartinae USM8 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.25
Metatranscriptomes 16.27
Isolates 0.48

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.44
Rhizosphere 95.69
Stem 0
Stem Tuber 0
Unclassified 1.44

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157375_10081090 3300013308 Bacteria 3284
2 Ga0070680_100089179 3300005336 Bacteria 2552
3 Ga0070682_100086900 3300005337 Bacteria 2037
4 Ga0070691_10080988 3300005341 Bacteria 1590
5 Ga0070668_100035342 3300005347 Bacteria 3811
6 Ga0070669_100032549 3300005353 Bacteria 3767
7 Ga0070675_100352818 3300005354 Bacteria 1305
8 Ga0070671_100263600 3300005355 Bacteria 1464
9 Ga0070671_100401713 3300005355 Bacteria 1172
10 Ga0070673_100063363 3300005364 Bacteria 2942
11 Ga0070673_100366473 3300005364 Bacteria 1282
12 Ga0070700_100025412 3300005441 Bacteria 3486
13 Ga0070662_100308673 3300005457 Bacteria 1287
14 Ga0070699_100000010 3300005518 Bacteria 271986
15 Ga0070699_100044945 3300005518 Bacteria 3823
16 Ga0070679_100048214 3300005530 Bacteria 4245
17 Ga0070672_100373521 3300005543 Bacteria 1219
18 Ga0070686_100070459 3300005544 Bacteria 2286
19 Ga0070704_100198248 3300005549 Bacteria 1619
20 Ga0068855_100184478 3300005563 Bacteria 2357
21 Ga0070664_100067582 3300005564 Bacteria 3054
22 Ga0070664_100193691 3300005564 Bacteria 1812
23 Ga0068857_100315643 3300005577 Bacteria 1442
24 Ga0070702_100006983 3300005615 Bacteria 5379
25 Ga0068859_100051135 3300005617 Bacteria 4152
26 Ga0068859_100221049 3300005617 Bacteria 1982
27 Ga0068864_100077633 3300005618 Bacteria 2905
28 Ga0068861_100005389 3300005719 Bacteria 8655
29 Ga0068861_100041261 3300005719 Bacteria 3456
30 Ga0068861_100212283 3300005719 Bacteria 1631
31 Ga0068861_100333090 3300005719 Bacteria 1326
32 Ga0068861_100403331 3300005719 Bacteria 1214
33 Ga0068858_100178419 3300005842 Bacteria 2005
34 Ga0068860_100106894 3300005843 Bacteria 2673
35 Ga0068862_100145942 3300005844 Bacteria 2103
36 Ga0068862_100259879 3300005844 Bacteria 1585
37 Ga0081455_10043542 3300005937 Bacteria 3925
38 Ga0097621_100273170 3300006237 Bacteria 1486
39 Ga0068871_100021835 3300006358 Bacteria 4927
40 Ga0075433_10003933 3300006852 Bacteria 11506
41 Ga0075433_10075516 3300006852 Bacteria 2966
42 Ga0075434_100116054 3300006871 Bacteria 2690
43 Ga0097620_100051135 3300006931 Bacteria 4152
44 Ga0097620_100221030 3300006931 Bacteria 1982
45 Ga0075435_100073949 3300007076 Bacteria 2787
46 Ga0105240_10024577 3300009093 Bacteria 7939
47 Ga0105240_10111347 3300009093 Bacteria 3312
48 Ga0111539_10016033 3300009094 Bacteria 9302
49 Ga0111539_10231412 3300009094 Bacteria 2152
50 Ga0157369_10002808 3300013105 Bacteria 20789
51 Ga0157378_10134906 3300013297 Bacteria 2288
52 Ga0157375_10027699 3300013308 Bacteria 5301
53 Ga0157380_10060167 3300014326 Bacteria 3034
54 Ga0157380_10082254 3300014326 Bacteria 2635
55 Ga0157380_10145348 3300014326 Bacteria 2043
56 Ga0157376_10325551 3300014969 Bacteria 1462
57 Ga0163161_10213823 3300017792 Bacteria 1490
58 Ga0207695_10145006 3300025913 Bacteria 2319
59 Ga0207660_10024296 3300025917 Bacteria 4102
60 Ga0207649_10236287 3300025920 Bacteria 1310
61 Ga0207652_10297971 3300025921 Bacteria 1455
62 Ga0207681_10067291 3300025923 Bacteria 2483
63 Ga0207650_10066534 3300025925 Bacteria 2702
64 Ga0207664_10116700 3300025929 Bacteria 2227
65 Ga0207664_10254552 3300025929 Unclassified 1533
66 Ga0207706_10358479 3300025933 Bacteria 1267
67 Ga0207670_10119484 3300025936 Bacteria 1913
68 Ga0207669_10030016 3300025937 Bacteria 3016
69 Ga0207691_10030030 3300025940 Bacteria 5082
70 Ga0207711_10662696 3300025941 Unclassified 973
71 Ga0207667_10070019 3300025949 Bacteria 3652
72 Ga0207651_10168374 3300025960 Bacteria 1725
73 Ga0207678_10240888 3300026067 Bacteria 1549
74 Ga0207708_10038444 3300026075 Bacteria 3645
75 Ga0207676_10218315 3300026095 Bacteria 1696
76 Ga0207675_100034650 3300026118 Bacteria 4708
77 Ga0207675_100042435 3300026118 Bacteria 4247
78 Ga0207675_100063932 3300026118 Bacteria 3438
79 Ga0207675_100104085 3300026118 Bacteria 2675
80 Ga0207675_100153173 3300026118 Bacteria 2195
81 Ga0268264_10227445 3300028381 Bacteria 1720
82 Ga0307513_10030429 3300031456 Bacteria 6133
83 Ga0307513_10035474 3300031456 Bacteria 5578
84 Ga0307513_10077261 3300031456 Bacteria 3449
85 Ga0307513_10196628 3300031456 Bacteria 1862
86 Ga0307509_10172843 3300031507 Bacteria 2037
87 Ga0316575_10000097 3300031665 Bacteria 21348
88 Ga0316575_10001747 3300031665 Bacteria 7115
89 Ga0316575_10035277 3300031665 Bacteria 1966
90 Ga0316575_10062783 3300031665 Bacteria 1486
91 Ga0316579_10002426 3300031691 Bacteria 7038
92 Ga0316579_10007279 3300031691 Bacteria 4563
93 Ga0316579_10009959 3300031691 Bacteria 4008
94 Ga0316579_10010307 3300031691 Bacteria 3948
95 Ga0316579_10026837 3300031691 Bacteria 2610
96 Ga0316576_10011477 3300031727 Bacteria 5808
97 Ga0316576_10013500 3300031727 Bacteria 5432
98 Ga0316576_10020511 3300031727 Bacteria 4552
99 Ga0316576_10023745 3300031727 Bacteria 4275
100 Ga0316576_10074622 3300031727 Bacteria 2508
101 Ga0316576_10170959 3300031727 Bacteria 1640
102 Ga0316576_10173151 3300031727 Bacteria 1629
103 Ga0316576_10181654 3300031727 Bacteria 1587
104 Ga0316578_10003307 3300031728 Bacteria 7340
105 Ga0316578_10003956 3300031728 Bacteria 6904
106 Ga0316578_10004140 3300031728 Bacteria 6790
107 Ga0316578_10004813 3300031728 Bacteria 6439
108 Ga0316578_10005595 3300031728 Bacteria 6111
109 Ga0316578_10006248 3300031728 Bacteria 5861
110 Ga0316578_10012751 3300031728 Bacteria 4437
111 Ga0316577_10002815 3300031733 Bacteria 8677
112 Ga0316577_10005494 3300031733 Bacteria 6647
113 Ga0316577_10009454 3300031733 Bacteria 5246
114 Ga0316577_10011554 3300031733 Bacteria 4784
115 Ga0316577_10141538 3300031733 Bacteria 1355
116 Ga0307406_10011519 3300031901 Bacteria 5024
117 Ga0307411_10063943 3300032005 Bacteria 2461
118 Ga0316583_10002947 3300032133 Bacteria 5982
119 Ga0316583_10014126 3300032133 Bacteria 2880
120 Ga0316583_10014685 3300032133 Bacteria 2821
121 Ga0316585_10000077 3300032137 Bacteria 16582
122 Ga0316585_10003755 3300032137 Bacteria 4193
123 Ga0316580_10000239 3300032139 Bacteria 11582
124 Ga0316580_10001172 3300032139 Bacteria 6654
125 Ga0316580_10004363 3300032139 Bacteria 4097
126 Ga0316580_10005345 3300032139 Bacteria 3744
127 Ga0316580_10013340 3300032139 Bacteria 2505
128 Ga0316580_10038574 3300032139 Unclassified 1476
129 Ga0316593_10000291 3300032168 Bacteria 8498
130 Ga0316593_10000294 3300032168 Bacteria 8471
131 Ga0316593_10000623 3300032168 Bacteria 6747
132 Ga0316593_10000909 3300032168 Bacteria 6057
133 Ga0316593_10003570 3300032168 Bacteria 3882
134 Ga0316593_10005253 3300032168 Bacteria 3399
135 Ga0316593_10005428 3300032168 Bacteria 3361
136 Ga0316593_10007334 3300032168 Bacteria 3024
137 Ga0316593_10014530 3300032168 Bacteria 2350
138 Ga0316593_10017724 3300032168 Bacteria 2176
139 Ga0316593_10024742 3300032168 Bacteria 1906
140 Ga0316592_1000064 3300033524 Bacteria 9534
141 Ga0316592_1000089 3300033524 Bacteria 8951
142 Ga0316592_1000108 3300033524 Bacteria 8605
143 Ga0316592_1000888 3300033524 Bacteria 4538
144 Ga0316592_1014670 3300033524 Bacteria 1627
145 Ga0316586_1000782 3300033527 Bacteria 3294
146 Ga0316586_1000960 3300033527 Bacteria 3076
147 Ga0316586_1001943 3300033527 Bacteria 2494
148 Ga0316588_1000025 3300033528 Bacteria 11113
149 Ga0316588_1000119 3300033528 Bacteria 7931
150 Ga0316588_1000259 3300033528 Bacteria 6448
151 Ga0316588_1001011 3300033528 Bacteria 4393
152 Ga0316588_1001933 3300033528 Bacteria 3526
153 Ga0316587_1000339 3300033529 Bacteria 4445
154 Ga0316596_1000122 3300033541 Bacteria 10214
155 Ga0316596_1000215 3300033541 Bacteria 8648
156 Ga0316596_1000244 3300033541 Bacteria 8310
157 Ga0316596_1000604 3300033541 Bacteria 6339
158 Ga0316596_1000770 3300033541 Bacteria 5879
159 Ga0316596_1000823 3300033541 Bacteria 5764
160 Ga0316596_1001195 3300033541 Bacteria 5117
161 Ga0316596_1006816 3300033541 Bacteria 2673
162 Ga0316596_1043377 3300033541 Bacteria 1184
163 Ga0316574_0000362 3300035398 Bacteria 17630
164 Ga0316574_0000723 3300035398 Bacteria 14142
165 Ga0316574_0004578 3300035398 Bacteria 7264
166 Ga0316574_0011431 3300035398 Bacteria 5044
167 Ga0316574_0024170 3300035398 Bacteria 3635
168 Ga0316574_0036151 3300035398 Bacteria 3022
169 Ga0373924_0003262 3300035410 Bacteria 5552
170 Ga0373937_0458731 3300036401 Bacteria 1210
171 Ga0316582_0001015 3300036647 Bacteria 11748
172 Ga0316582_0002145 3300036647 Bacteria 9134
173 Ga0316582_0007620 3300036647 Bacteria 5771
174 Ga0316582_0013499 3300036647 Bacteria 4600
175 Ga0316582_0056220 3300036647 Bacteria 2509
176 Ga0316582_0065268 3300036647 Bacteria 2343
177 Ga0316584_0001677 3300036712 Bacteria 13532
178 Ga0316584_0005076 3300036712 Bacteria 8778
179 Ga0316584_0007337 3300036712 Bacteria 7530
180 Ga0316584_0008658 3300036712 Bacteria 7019
181 Ga0316584_0012038 3300036712 Bacteria 6093
182 Ga0316584_0043989 3300036712 Bacteria 3330
183 Ga0316584_0060301 3300036712 Bacteria 2841
184 Ga0395899_0098903 3300037312 Bacteria 2108
185 Ga0395900_0357890 3300037418 Bacteria 1432
186 Ga0395898_0071897 3300037466 Bacteria 3342
187 Ga0395898_0141294 3300037466 Bacteria 2305
188 Ga0400488_25193 3300038741 Bacteria 1153
189 Ga0451791_0245888 3300041451 Bacteria 1598
190 Ga0451802_2123622 3300041460 Bacteria 2147
191 Ga0451807_0306619 3300041486 Bacteria 2394
192 Ga0453683_0016096 3300044673 Bacteria 4832
193 Ga0466966_0085027 3300044684 Bacteria 1967
194 Ga0466961_0013664 3300044693 Bacteria 5202
195 Ga0466964_0028544 3300044706 Bacteria 2199
196 Ga0466968_0039952 3300044735 Bacteria 1977
197 Ga0466959_0027616 3300045049 Bacteria 4208
198 Ga0466959_0187902 3300045049 Bacteria 1443
199 Ga0495638_0042637 3300046460 Bacteria 2865
200 Ga0495625_0030801 3300046660 Bacteria 3998
201 Ga0495625_0175045 3300046660 Bacteria 1430
202 Ga0495649_0001072 3300046694 Bacteria 21366
203 Ga0501042_0079833 3300049578 Bacteria 2344
204 Ga0501067_0081300 3300049583 Bacteria 1796
205 nmdc:mga08y16_409831_c1 3300050511 Bacteria 1386
206 nmdc:mga0rr50_293147_c1 3300050513 Bacteria 1360
207 nmdc:mga0a205_31513_c1 3300050515 Bacteria 5080
208 nmdc:mga0a205_89839_c1 3300050515 Bacteria 2969
209 8002745615 8002745576 Bacteria 4840272
210 Ga0157375_10081090
211 Ga0070680_100089179
212 Ga0070682_100086900
213 Ga0070691_10080988
214 Ga0070668_100035342
215 Ga0070669_100032549
216 Ga0070675_100352818
217 Ga0070671_100263600
218 Ga0070671_100401713
219 Ga0070673_100063363
220 Ga0070673_100366473
221 Ga0070700_100025412
222 Ga0070662_100308673
223 Ga0070699_100000010
224 Ga0070699_100044945
225 Ga0070679_100048214
226 Ga0070672_100373521
227 Ga0070686_100070459
228 Ga0070704_100198248
229 Ga0068855_100184478
230 Ga0070664_100067582
231 Ga0070664_100193691
232 Ga0068857_100315643
233 Ga0070702_100006983
234 Ga0068859_100051135
235 Ga0068859_100221049
236 Ga0068864_100077633
237 Ga0068861_100005389
238 Ga0068861_100041261
239 Ga0068861_100212283
240 Ga0068861_100333090
241 Ga0068861_100403331
242 Ga0068858_100178419
243 Ga0068860_100106894
244 Ga0068862_100145942
245 Ga0068862_100259879
246 Ga0081455_10043542
247 Ga0097621_100273170
248 Ga0068871_100021835
249 Ga0075433_10003933
250 Ga0075433_10075516
251 Ga0075434_100116054
252 Ga0097620_100051135
253 Ga0097620_100221030
254 Ga0075435_100073949
255 Ga0105240_10024577
256 Ga0105240_10111347
257 Ga0111539_10016033
258 Ga0111539_10231412
259 Ga0157369_10002808
260 Ga0157378_10134906
261 Ga0157375_10027699
262 Ga0157380_10060167
263 Ga0157380_10082254
264 Ga0157380_10145348
265 Ga0157376_10325551
266 Ga0163161_10213823
267 Ga0207695_10145006
268 Ga0207660_10024296
269 Ga0207649_10236287
270 Ga0207652_10297971
271 Ga0207681_10067291
272 Ga0207650_10066534
273 Ga0207664_10116700
274 Ga0207664_10254552
275 Ga0207706_10358479
276 Ga0207670_10119484
277 Ga0207669_10030016
278 Ga0207691_10030030
279 Ga0207711_10662696
280 Ga0207667_10070019
281 Ga0207651_10168374
282 Ga0207678_10240888
283 Ga0207708_10038444
284 Ga0207676_10218315
285 Ga0207675_100034650
286 Ga0207675_100042435
287 Ga0207675_100063932
288 Ga0207675_100104085
289 Ga0207675_100153173
290 Ga0268264_10227445
291 Ga0307513_10030429
292 Ga0307513_10035474
293 Ga0307513_10077261
294 Ga0307513_10196628
295 Ga0307509_10172843
296 Ga0316575_10000097
297 Ga0316575_10001747
298 Ga0316575_10035277
299 Ga0316575_10062783
300 Ga0316579_10002426
301 Ga0316579_10007279
302 Ga0316579_10009959
303 Ga0316579_10010307
304 Ga0316579_10026837
305 Ga0316576_10011477
306 Ga0316576_10013500
307 Ga0316576_10020511
308 Ga0316576_10023745
309 Ga0316576_10074622
310 Ga0316576_10170959
311 Ga0316576_10173151
312 Ga0316576_10181654
313 Ga0316578_10003307
314 Ga0316578_10003956
315 Ga0316578_10004140
316 Ga0316578_10004813
317 Ga0316578_10005595
318 Ga0316578_10006248
319 Ga0316578_10012751
320 Ga0316577_10002815
321 Ga0316577_10005494
322 Ga0316577_10009454
323 Ga0316577_10011554
324 Ga0316577_10141538
325 Ga0307406_10011519
326 Ga0307411_10063943
327 Ga0316583_10002947
328 Ga0316583_10014126
329 Ga0316583_10014685
330 Ga0316585_10000077
331 Ga0316585_10003755
332 Ga0316580_10000239
333 Ga0316580_10001172
334 Ga0316580_10004363
335 Ga0316580_10005345
336 Ga0316580_10013340
337 Ga0316580_10038574
338 Ga0316593_10000291
339 Ga0316593_10000294
340 Ga0316593_10000623
341 Ga0316593_10000909
342 Ga0316593_10003570
343 Ga0316593_10005253
344 Ga0316593_10005428
345 Ga0316593_10007334
346 Ga0316593_10014530
347 Ga0316593_10017724
348 Ga0316593_10024742
349 Ga0316592_1000064
350 Ga0316592_1000089
351 Ga0316592_1000108
352 Ga0316592_1000888
353 Ga0316592_1014670
354 Ga0316586_1000782
355 Ga0316586_1000960
356 Ga0316586_1001943
357 Ga0316588_1000025
358 Ga0316588_1000119
359 Ga0316588_1000259
360 Ga0316588_1001011
361 Ga0316588_1001933
362 Ga0316587_1000339
363 Ga0316596_1000122
364 Ga0316596_1000215
365 Ga0316596_1000244
366 Ga0316596_1000604
367 Ga0316596_1000770
368 Ga0316596_1000823
369 Ga0316596_1001195
370 Ga0316596_1006816
371 Ga0316596_1043377
372 Ga0316574_0000362
373 Ga0316574_0000723
374 Ga0316574_0004578
375 Ga0316574_0011431
376 Ga0316574_0024170
377 Ga0316574_0036151
378 Ga0373924_0003262
379 Ga0373937_0458731
380 Ga0316582_0001015
381 Ga0316582_0002145
382 Ga0316582_0007620
383 Ga0316582_0013499
384 Ga0316582_0056220
385 Ga0316582_0065268
386 Ga0316584_0001677
387 Ga0316584_0005076
388 Ga0316584_0007337
389 Ga0316584_0008658
390 Ga0316584_0012038
391 Ga0316584_0043989
392 Ga0316584_0060301
393 Ga0395899_0098903
394 Ga0395900_0357890
395 Ga0395898_0071897
396 Ga0395898_0141294
397 Ga0400488_25193
398 Ga0451791_0245888
399 Ga0451802_2123622
400 Ga0451807_0306619
401 Ga0453683_0016096
402 Ga0466966_0085027
403 Ga0466961_0013664
404 Ga0466964_0028544
405 Ga0466968_0039952
406 Ga0466959_0027616
407 Ga0466959_0187902
408 Ga0495638_0042637
409 Ga0495625_0030801
410 Ga0495625_0175045
411 Ga0495649_0001072
412 Ga0501042_0079833
413 Ga0501067_0081300
414 nmdc:mga08y16_409831_c1
415 nmdc:mga0rr50_293147_c1
416 nmdc:mga0a205_31513_c1
417 nmdc:mga0a205_89839_c1
418 8002745615

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01509

TruB_N

TruB family pseudouridylate synthase (N terminal domain)

39

187

0.99

PF09157

TruB-C_2

Pseudouridine synthase II TruB, C-terminal

252

308

0.98

PF16198

TruB_C_2

tRNA pseudouridylate synthase B C-terminal domain

188

249

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1k8w-assembly1.cif.gz_A crystal structure of the e. coli pseudouridine synthase trub bound to a t stem-loop rna 0.9477 2 291
1zl3-assembly1.cif.gz_A coupling of active site motions and rna binding 0.9449 2 290
1k8w-assembly1.cif.gz_A crystal structure of the e. coli pseudouridine synthase trub bound to a t stem-loop rna 0.9352 2 291
1zl3-assembly1.cif.gz_A coupling of active site motions and rna binding 0.9293 2 290
2ab4-assembly1.cif.gz_A dissecting the roles of a strictly conserved tyrosine in substrate recognition and catalysis by pseudouridine 55 synthase 0.9091 1 291
ID Description Score Start End Superfamily
af_B9F4Z0_25_81_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9643 3 51 3.30.2350.10
af_Q0WVR7_318_539_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9616 1 217 3.30.2350.10
af_P9WHP7_7_227_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9579 4 213 3.30.2350.10
af_Q8I715_322_559_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9571 3 210 3.30.2350.10
1k8wA01 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9488 2 230 3.30.2350.10
ID Description Score Start End GO Terms
AF-K1ZVW7-F1-model_v4 tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase) 0.988 2 213 GO:0003723
GO:0016829
GO:0031119
GO:0160148
GO:1990481
AF-T1AIG0-F1-model_v4 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.9856 1 219 GO:0003723
GO:0006400
GO:0009982
GO:1990481
AF-A0A2G4E651-F1-model_v4 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.9816 2 218 GO:0003723
GO:0006400
GO:0160148
GO:1990481
AF-A0A258M4E3-F1-model_v4 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.9813 2 215 GO:0003723
GO:0006400
GO:0160148
GO:1990481
AF-T1AIG0-F1-model_v4 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.9812 1 219 GO:0003723
GO:0006400
GO:0009982
GO:1990481

Map