F318652

General Info

Members Datasets Scaffolds Average Seq Length
209 144 418 202

Family's Representative Sequence

Representative Sequence 3300005328|Ga0070676_10275596|Ga0070676_102755962
Length 224
Sequence MKRAATPSHGAPAGADTLGRPNQRRRTRKDLLQAAARLMKQGRKPSLEEIAEEAIVSRATAYRYFPSVEALHREAALDVAVPSAETLFGAGSPDDPIARVERVDTMLHEMMLANEVQLRMLLAHSLERVAGGDAHGPHDGTMPARQNRRSPLIDAALEPARQEFKPAALKHLAKALALIIGTEAMVVFKDVLQVDDAEARRVKRWAIRALIDAARKPEHKESIP

Samples

Sample ID Description Type Environment
1 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300002077 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3 Metagenome Rhizosphere
4 3300002239 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2 Metagenome Rhizosphere
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
16 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
17 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
18 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
19 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
20 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
26 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
27 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
28 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
31 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
32 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
33 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
34 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
35 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
36 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
38 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
43 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
44 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
45 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
46 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
47 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
48 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
49 3300015683 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_F04 Metagenome Rhizosphere
50 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
77 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
78 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
79 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
80 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
81 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
82 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
83 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
84 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
85 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
86 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
87 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
88 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
89 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
90 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
91 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
92 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
93 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
94 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
95 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
96 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
97 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
98 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
99 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
100 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
101 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
102 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
103 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
104 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
105 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
106 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
107 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
108 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
109 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
110 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
111 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
112 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
113 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
114 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
115 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
116 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
125 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
126 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
127 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
128 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
129 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
130 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
131 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
132 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
133 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
134 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
135 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
136 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
137 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
138 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
139 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
140 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
141 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
142 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
143 2571042365 Lysobacter oryzae DSM 21044 Isolate Rhizosphere
144 8004640170 Mesorhizobium sp. GbtcB19 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.04
Metatranscriptomes 0
Isolates 0.96

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.83
Nodule 0
Rhizoplane 3.35
Rhizosphere 89.47
Stem 0
Stem Tuber 0
Unclassified 6.22

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070676_10275596 3300005328 Unclassified 1131
2 JGI24737J22298_10001243 3300001990 Bacteria 9004
3 JGI24744J21845_10015211 3300002077 Bacteria 1538
4 JGI24034J26672_10010678 3300002239 Bacteria 1369
5 rootH1_10040862 3300003323 Bacteria 5300
6 Ga0070676_10093276 3300005328 Bacteria 1848
7 Ga0068869_100477935 3300005334 Bacteria 1037
8 Ga0070682_100429362 3300005337 Bacteria 1006
9 Ga0070668_100022557 3300005347 Bacteria 4760
10 Ga0070675_100014931 3300005354 Bacteria 6133
11 Ga0070675_100621194 3300005354 Bacteria 981
12 Ga0070671_100052995 3300005355 Bacteria 3373
13 Ga0070674_100033790 3300005356 Bacteria 3408
14 Ga0070674_100176423 3300005356 Bacteria 1633
15 Ga0070673_100404013 3300005364 Bacteria 1222
16 Ga0070659_100033197 3300005366 Bacteria 4007
17 Ga0070667_100244895 3300005367 Bacteria 1602
18 Ga0070667_100443890 3300005367 Bacteria 1185
19 Ga0070714_100330686 3300005435 Bacteria 1427
20 Ga0070701_10524052 3300005438 Bacteria 773
21 Ga0070700_100562097 3300005441 Bacteria 888
22 Ga0070663_100396497 3300005455 Unclassified 1127
23 Ga0070678_100033684 3300005456 Bacteria 3560
24 Ga0070678_100671383 3300005456 Bacteria 931
25 Ga0070678_100754638 3300005456 Bacteria 880
26 Ga0070662_100089111 3300005457 Bacteria 2314
27 Ga0070662_100355019 3300005457 Bacteria 1202
28 Ga0068853_100231906 3300005539 Bacteria 1689
29 Ga0070672_100455928 3300005543 Bacteria 1102
30 Ga0070665_100000208 3300005548 Bacteria 102367
31 Ga0070665_100000246 3300005548 Bacteria 90170
32 Ga0068852_100672500 3300005616 Bacteria 1044
33 Ga0068859_100107181 3300005617 Bacteria 2854
34 Ga0068859_100237057 3300005617 Unclassified 1913
35 Ga0068864_100001490 3300005618 Bacteria 19302
36 Ga0068864_100604835 3300005618 Bacteria 1064
37 Ga0068861_100976553 3300005719 Bacteria 807
38 Ga0068863_100000367 3300005841 Bacteria 45948
39 Ga0068863_100465208 3300005841 Bacteria 1242
40 Ga0068858_100000219 3300005842 Bacteria 61717
41 Ga0068858_100083149 3300005842 Bacteria 2977
42 Ga0068860_100000051 3300005843 Bacteria 208179
43 Ga0068860_100051926 3300005843 Unclassified 3900
44 Ga0068862_100012058 3300005844 Bacteria 7144
45 Ga0068862_100229633 3300005844 Bacteria 1683
46 Ga0075363_100427021 3300006048 Bacteria 781
47 Ga0075367_10274458 3300006178 Bacteria 1059
48 Ga0075369_10044860 3300006186 Bacteria 1900
49 Ga0068871_100010918 3300006358 Bacteria 6651
50 Ga0097620_100107176 3300006931 Bacteria 2854
51 Ga0097620_100237057 3300006931 Unclassified 1913
52 Ga0105250_10015767 3300009092 Bacteria 3091
53 Ga0111539_10156404 3300009094 Bacteria 2668
54 Ga0105245_10280456 3300009098 Bacteria 1628
55 Ga0105248_10227843 3300009177 Bacteria 2098
56 Ga0105239_10145560 3300010375 Bacteria 2642
57 Ga0105239_10426123 3300010375 Unclassified 1503
58 Ga0157372_10296004 3300013307 Unclassified 1882
59 Ga0182008_10001059 3300014497 Bacteria 19035
60 Ga0157377_10634432 3300014745 Bacteria 767
61 Ga0157379_10044950 3300014968 Bacteria 3942
62 Ga0157379_10114225 3300014968 Bacteria 2427
63 Ga0157376_11271028 3300014969 Bacteria 765
64 Ga0182006_1067092 3300015261 Bacteria 1339
65 Ga0182007_10014698 3300015262 Bacteria 2942
66 Ga0183362_10001 3300015683 Bacteria 2046624
67 Ga0207688_10258533 3300025901 Bacteria 1056
68 Ga0207647_10027745 3300025904 Bacteria 3688
69 Ga0207685_10244855 3300025905 Bacteria 864
70 Ga0207645_10185806 3300025907 Unclassified 1364
71 Ga0207659_10262546 3300025926 Bacteria 1405
72 Ga0207659_10337856 3300025926 Bacteria 1247
73 Ga0207687_10054882 3300025927 Bacteria 2790
74 Ga0207664_10169428 3300025929 Bacteria 1868
75 Ga0207644_10078234 3300025931 Bacteria 2437
76 Ga0207690_10158127 3300025932 Bacteria 1687
77 Ga0207706_10070807 3300025933 Bacteria 3067
78 Ga0207706_10150565 3300025933 Bacteria 2046
79 Ga0207706_10475045 3300025933 Bacteria 1080
80 Ga0207669_10022696 3300025937 Bacteria 3338
81 Ga0207691_10355128 3300025940 Bacteria 1254
82 Ga0207691_10522405 3300025940 Bacteria 1007
83 Ga0207711_10047747 3300025941 Bacteria 3662
84 Ga0207668_10003503 3300025972 Bacteria 9215
85 Ga0207668_10187702 3300025972 Bacteria 1636
86 Ga0207658_10165517 3300025986 Bacteria 1816
87 Ga0207703_10000659 3300026035 Bacteria 34587
88 Ga0207639_10476911 3300026041 Unclassified 1136
89 Ga0207678_10128953 3300026067 Bacteria 2157
90 Ga0207641_10000070 3300026088 Bacteria 152598
91 Ga0207641_10503642 3300026088 Bacteria 1176
92 Ga0207676_10001132 3300026095 Bacteria 20136
93 Ga0207674_10583548 3300026116 Bacteria 1080
94 Ga0207683_10015611 3300026121 Bacteria 6464
95 Ga0207683_10092895 3300026121 Bacteria 2689
96 Ga0207683_10422042 3300026121 Bacteria 1228
97 Ga0207698_11515855 3300026142 Unclassified 686
98 Ga0268266_10000003 3300028379 Bacteria 1701703
99 Ga0268266_10000325 3300028379 Bacteria 75057
100 Ga0268265_10064572 3300028380 Bacteria 2820
101 Ga0268264_10000021 3300028381 Bacteria 481580
102 Ga0268264_10039366 3300028381 Unclassified 3906
103 Ga0307515_10000028 3300028794 Bacteria 368467
104 Ga0265327_10005303 3300031251 Bacteria 10817
105 Ga0307513_10022542 3300031456 Bacteria 7395
106 Ga0307513_10051281 3300031456 Bacteria 4453
107 Ga0307408_100141077 3300031548 Bacteria 1891
108 Ga0307412_10516123 3300031911 Bacteria 997
109 Ga0307416_101669018 3300032002 Bacteria 742
110 Ga0307414_10282423 3300032004 Bacteria 1396
111 Ga0307411_10216700 3300032005 Bacteria 1482
112 Ga0307411_11190558 3300032005 Bacteria 690
113 Ga0373953_0214333 3300035117 Bacteria 834
114 Ga0395905_0000620 3300037471 Bacteria 47607
115 Ga0395905_0083681 3300037471 Bacteria 2989
116 Ga0395905_0572948 3300037471 Bacteria 1030
117 Ga0395901_0129386 3300038443 Bacteria 2653
118 Ga0439439_0005357 3300041406 Bacteria 2926
119 Ga0439448_0000193 3300042005 Bacteria 12632
120 Ga0439448_0038949 3300042005 Bacteria 1531
121 Ga0439432_035854 3300042006 Bacteria 1589
122 Ga0439455_0000302 3300042012 Bacteria 6193
123 Ga0439455_0003553 3300042012 Bacteria 2996
124 Ga0439455_0008631 3300042012 Bacteria 2189
125 Ga0450923_004843 3300042125 Bacteria 2137
126 Ga0466972_0090238 3300044658 Bacteria 1454
127 Ga0466965_0459619 3300044683 Bacteria 710
128 Ga0466960_0486247 3300044901 Unclassified 722
129 Ga0466967_0110292 3300045976 Bacteria 2527
130 Ga0466967_0280276 3300045976 Bacteria 1599
131 Ga0495603_0002572 3300046455 Bacteria 10704
132 Ga0495638_0057345 3300046460 Bacteria 2416
133 Ga0495650_0000017 3300046471 Bacteria 542552
134 Ga0495664_0317850 3300046477 Bacteria 939
135 Ga0495606_0004595 3300046507 Bacteria 13684
136 Ga0495610_0000176 3300046512 Bacteria 71110
137 Ga0495632_0241809 3300046519 Bacteria 812
138 Ga0495648_0008946 3300046524 Bacteria 7827
139 Ga0495654_0000012 3300046530 Bacteria 328997
140 Ga0495625_0007875 3300046660 Bacteria 9178
141 Ga0495625_0026904 3300046660 Bacteria 4337
142 Ga0495625_0083842 3300046660 Bacteria 2214
143 Ga0495647_0137207 3300046681 Bacteria 1041
144 Ga0495672_0000665 3300047320 Bacteria 38253
145 Ga0495672_0133117 3300047320 Unclassified 1306
146 Ga0495681_0051601 3300047470 Bacteria 1934
147 Ga0495686_0000023 3300047472 Bacteria 400457
148 Ga0496104_0028189 3300048907 Bacteria 5204
149 Ga0496105_0207607 3300048908 Bacteria 1597
150 Ga0496105_0281167 3300048908 Bacteria 1342
151 Ga0496106_0084941 3300048909 Bacteria 2436
152 Ga0496107_0000515 3300048910 Bacteria 21514
153 Ga0496114_0137025 3300048917 Bacteria 2117
154 Ga0496114_0362596 3300048917 Bacteria 1282
155 Ga0496121_0028182 3300048924 Bacteria 5234
156 Ga0496121_0471553 3300048924 Bacteria 804
157 Ga0501032_0001772 3300049569 Bacteria 17036
158 Ga0501033_0033192 3300049570 Bacteria 3875
159 Ga0501033_0239028 3300049570 Bacteria 1289
160 Ga0501034_0000197 3300049571 Bacteria 114088
161 Ga0501034_0000891 3300049571 Bacteria 43738
162 Ga0501034_0001067 3300049571 Bacteria 38825
163 Ga0501034_0064930 3300049571 Bacteria 3663
164 Ga0501034_0139357 3300049571 Bacteria 2406
165 Ga0501036_0053399 3300049572 Bacteria 3422
166 Ga0501036_0328187 3300049572 Bacteria 1278
167 Ga0501036_0346862 3300049572 Bacteria 1240
168 Ga0501037_0031765 3300049573 Bacteria 3898
169 Ga0501037_0077730 3300049573 Bacteria 2408
170 Ga0501038_0081739 3300049574 Bacteria 2721
171 Ga0501038_0334003 3300049574 Bacteria 1183
172 Ga0501039_0050832 3300049575 Bacteria 3207
173 Ga0501043_0226150 3300049579 Bacteria 1446
174 Ga0501043_0563787 3300049579 Bacteria 845
175 Ga0501067_0005066 3300049583 Bacteria 7320
176 Ga0501068_0002721 3300049584 Bacteria 9382
177 Ga0501068_0012950 3300049584 Bacteria 4739
178 Ga0501068_0025425 3300049584 Bacteria 3482
179 Ga0501068_0201633 3300049584 Bacteria 1262
180 Ga0501070_0043734 3300049586 Bacteria 3727
181 Ga0501070_0208552 3300049586 Bacteria 1604
182 Ga0501070_0467167 3300049586 Bacteria 1016
183 Ga0501072_0104755 3300049588 Bacteria 2249
184 Ga0501073_0000106 3300049589 Bacteria 53389
185 Ga0501073_0048826 3300049589 Bacteria 2969
186 Ga0501074_0082363 3300049590 Bacteria 2307
187 Ga0501077_0000045 3300049593 Bacteria 62973
188 Ga0501079_0342398 3300049741 Bacteria 1171
189 Ga0501080_0000733 3300049742 Bacteria 26539
190 Ga0501080_0062842 3300049742 Bacteria 3455
191 Ga0501080_0664867 3300049742 Bacteria 921
192 Ga0501080_0681894 3300049742 Bacteria 907
193 Ga0501083_0041788 3300049744 Bacteria 3109
194 Ga0501083_0094666 3300049744 Bacteria 1972
195 Ga0501035_0059990 3300049822 Bacteria 3387
196 Ga0501044_0013709 3300049823 Bacteria 8761
197 Ga0501044_0014955 3300049823 Bacteria 8367
198 Ga0501044_0105333 3300049823 Bacteria 2833
199 nmdc:mga0k408_80098_c1 3300050493 Bacteria 1911
200 nmdc:mga06z11_663524_c1 3300050494 Bacteria 635
201 Ga0495655_0020094 3300053083 Bacteria 1493
202 Ga0500578_0061013 3300053086 Bacteria 2408
203 Ga0500616_0135010 3300053153 Bacteria 1161
204 Ga0500645_029404 3300053730 Bacteria 1659
205 Ga0501082_0021002 3300060353 Bacteria 5632
206 Ga0501082_0583329 3300060353 Bacteria 978
207 Ga0501082_0636994 3300060353 Bacteria 933
208 2572253790 2571042365 Bacteria 3289345
209 8004643844 8004640170 Bacteria 6723001
210 Ga0070676_10275596
211 JGI24737J22298_10001243
212 JGI24744J21845_10015211
213 JGI24034J26672_10010678
214 rootH1_10040862
215 Ga0070676_10093276
216 Ga0068869_100477935
217 Ga0070682_100429362
218 Ga0070668_100022557
219 Ga0070675_100014931
220 Ga0070675_100621194
221 Ga0070671_100052995
222 Ga0070674_100033790
223 Ga0070674_100176423
224 Ga0070673_100404013
225 Ga0070659_100033197
226 Ga0070667_100244895
227 Ga0070667_100443890
228 Ga0070714_100330686
229 Ga0070701_10524052
230 Ga0070700_100562097
231 Ga0070663_100396497
232 Ga0070678_100033684
233 Ga0070678_100671383
234 Ga0070678_100754638
235 Ga0070662_100089111
236 Ga0070662_100355019
237 Ga0068853_100231906
238 Ga0070672_100455928
239 Ga0070665_100000208
240 Ga0070665_100000246
241 Ga0068852_100672500
242 Ga0068859_100107181
243 Ga0068859_100237057
244 Ga0068864_100001490
245 Ga0068864_100604835
246 Ga0068861_100976553
247 Ga0068863_100000367
248 Ga0068863_100465208
249 Ga0068858_100000219
250 Ga0068858_100083149
251 Ga0068860_100000051
252 Ga0068860_100051926
253 Ga0068862_100012058
254 Ga0068862_100229633
255 Ga0075363_100427021
256 Ga0075367_10274458
257 Ga0075369_10044860
258 Ga0068871_100010918
259 Ga0097620_100107176
260 Ga0097620_100237057
261 Ga0105250_10015767
262 Ga0111539_10156404
263 Ga0105245_10280456
264 Ga0105248_10227843
265 Ga0105239_10145560
266 Ga0105239_10426123
267 Ga0157372_10296004
268 Ga0182008_10001059
269 Ga0157377_10634432
270 Ga0157379_10044950
271 Ga0157379_10114225
272 Ga0157376_11271028
273 Ga0182006_1067092
274 Ga0182007_10014698
275 Ga0183362_10001
276 Ga0207688_10258533
277 Ga0207647_10027745
278 Ga0207685_10244855
279 Ga0207645_10185806
280 Ga0207659_10262546
281 Ga0207659_10337856
282 Ga0207687_10054882
283 Ga0207664_10169428
284 Ga0207644_10078234
285 Ga0207690_10158127
286 Ga0207706_10070807
287 Ga0207706_10150565
288 Ga0207706_10475045
289 Ga0207669_10022696
290 Ga0207691_10355128
291 Ga0207691_10522405
292 Ga0207711_10047747
293 Ga0207668_10003503
294 Ga0207668_10187702
295 Ga0207658_10165517
296 Ga0207703_10000659
297 Ga0207639_10476911
298 Ga0207678_10128953
299 Ga0207641_10000070
300 Ga0207641_10503642
301 Ga0207676_10001132
302 Ga0207674_10583548
303 Ga0207683_10015611
304 Ga0207683_10092895
305 Ga0207683_10422042
306 Ga0207698_11515855
307 Ga0268266_10000003
308 Ga0268266_10000325
309 Ga0268265_10064572
310 Ga0268264_10000021
311 Ga0268264_10039366
312 Ga0307515_10000028
313 Ga0265327_10005303
314 Ga0307513_10022542
315 Ga0307513_10051281
316 Ga0307408_100141077
317 Ga0307412_10516123
318 Ga0307416_101669018
319 Ga0307414_10282423
320 Ga0307411_10216700
321 Ga0307411_11190558
322 Ga0373953_0214333
323 Ga0395905_0000620
324 Ga0395905_0083681
325 Ga0395905_0572948
326 Ga0395901_0129386
327 Ga0439439_0005357
328 Ga0439448_0000193
329 Ga0439448_0038949
330 Ga0439432_035854
331 Ga0439455_0000302
332 Ga0439455_0003553
333 Ga0439455_0008631
334 Ga0450923_004843
335 Ga0466972_0090238
336 Ga0466965_0459619
337 Ga0466960_0486247
338 Ga0466967_0110292
339 Ga0466967_0280276
340 Ga0495603_0002572
341 Ga0495638_0057345
342 Ga0495650_0000017
343 Ga0495664_0317850
344 Ga0495606_0004595
345 Ga0495610_0000176
346 Ga0495632_0241809
347 Ga0495648_0008946
348 Ga0495654_0000012
349 Ga0495625_0007875
350 Ga0495625_0026904
351 Ga0495625_0083842
352 Ga0495647_0137207
353 Ga0495672_0000665
354 Ga0495672_0133117
355 Ga0495681_0051601
356 Ga0495686_0000023
357 Ga0496104_0028189
358 Ga0496105_0207607
359 Ga0496105_0281167
360 Ga0496106_0084941
361 Ga0496107_0000515
362 Ga0496114_0137025
363 Ga0496114_0362596
364 Ga0496121_0028182
365 Ga0496121_0471553
366 Ga0501032_0001772
367 Ga0501033_0033192
368 Ga0501033_0239028
369 Ga0501034_0000197
370 Ga0501034_0000891
371 Ga0501034_0001067
372 Ga0501034_0064930
373 Ga0501034_0139357
374 Ga0501036_0053399
375 Ga0501036_0328187
376 Ga0501036_0346862
377 Ga0501037_0031765
378 Ga0501037_0077730
379 Ga0501038_0081739
380 Ga0501038_0334003
381 Ga0501039_0050832
382 Ga0501043_0226150
383 Ga0501043_0563787
384 Ga0501067_0005066
385 Ga0501068_0002721
386 Ga0501068_0012950
387 Ga0501068_0025425
388 Ga0501068_0201633
389 Ga0501070_0043734
390 Ga0501070_0208552
391 Ga0501070_0467167
392 Ga0501072_0104755
393 Ga0501073_0000106
394 Ga0501073_0048826
395 Ga0501074_0082363
396 Ga0501077_0000045
397 Ga0501079_0342398
398 Ga0501080_0000733
399 Ga0501080_0062842
400 Ga0501080_0664867
401 Ga0501080_0681894
402 Ga0501083_0041788
403 Ga0501083_0094666
404 Ga0501035_0059990
405 Ga0501044_0013709
406 Ga0501044_0014955
407 Ga0501044_0105333
408 nmdc:mga0k408_80098_c1
409 nmdc:mga06z11_663524_c1
410 Ga0495655_0020094
411 Ga0500578_0061013
412 Ga0500616_0135010
413 Ga0500645_029404
414 Ga0501082_0021002
415 Ga0501082_0583329
416 Ga0501082_0636994
417 2572253790
418 8004643844

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

31

75

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
6sy6-assembly1.cif.gz_B tetr in complex with the tetr-binding rna-aptamer k2 0.5728 33 193
5cxg-assembly2.cif.gz_D crystal structure of mycobacterium tuberculosis kstr in complex with peg 0.5487 11 190
5cxi-assembly1.cif.gz_A crystal structure of mycobacterium tuberculosis kstr in complex with 3-oxo-23,24-bisnorchol-4-en-22-oyl-coa (4-bnc-coa) 0.5466 11 191
3cjd-assembly1.cif.gz_B crystal structure of putative tetr transcriptional regulator (yp_510936.1) from jannaschia sp. ccs1 at 1.79 a resolution 0.5427 13 188
5cxg-assembly2.cif.gz_D crystal structure of mycobacterium tuberculosis kstr in complex with peg 0.5386 11 190
ID Description Score Start End Superfamily
6azhA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.931 11 57 1.10.10.60
1t33B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8705 7 59 1.10.10.60
2eh3A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8688 12 57 1.10.10.60
6azhA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8631 11 57 1.10.10.60
3lsjA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8543 2 50 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A158DFI9-F1-model_v4 TetR family transcriptional regulator 0.9469 5 194 GO:0000976
GO:0003700
AF-A0A521H3X0-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9423 1 194 GO:0000976
GO:0003700
AF-A0A528WVU8-F1-model_v4 Helix-turn-helix transcriptional regulator 0.9413 33 198 GO:0003677
AF-G4MFV0-F1-model_v4 HTH tetR-type domain-containing protein 0.936 1 194 GO:0003677
AF-A0A516IQX9-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9312 1 194 GO:0000976
GO:0003700

Map