F318485

General Info

Members Datasets Scaffolds Average Seq Length
208 145 416 382

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2744054611|2744954787
Length 430
Sequence GGSGNCACALRSCRAFSFGTISPMTTPRRARLQALPERASVSQLELYFDLVFVFALTQVTDLLGVQTTAQNVLRAVLVLGVLWWAWVGYAWLGNVVRADEGVMRVVMFTATAAAFILALTIPEAFEDLPGELSGPVVFALGYFVIRAVHLGTFFVIGRNDPQLRRQLTRWVPSVLLGTAFLLIASQTEGWVQIAFWIAALVGDYIGTYLSGQGWRLRSPSHFAERHGLIIIVAIGESIVSIGIGVAHLPISWPIIIASLLGLTVSALLWWSYFDTAALAVEHALSDADERRQIHIAQRCYSYAHLPMVIGIVMVSLGLKKVLNYAGDESHHTISDPLYGVPLFCLYGGAAVFVLALVYSKWFATHELGIVRLVLAGVILALIPLAAALPAIASLALLTAVLGALIGYETWRYYEAREEIRHGHEHPEPQA

Samples

Sample ID Description Type Environment
1 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
9 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
10 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
13 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
14 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
15 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
16 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
19 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
20 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
21 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
22 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
23 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
24 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
25 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
26 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
27 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
28 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
29 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
30 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
31 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
32 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
33 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
34 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
41 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
42 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
43 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
44 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
45 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
46 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
47 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
63 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
64 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
65 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
66 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
67 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
68 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
69 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
70 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
71 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
72 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
73 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
74 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
75 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
76 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
77 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
78 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
79 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
80 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
81 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
82 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
83 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
84 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
85 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
86 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
87 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
88 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
89 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
90 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
91 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
92 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
93 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
94 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
95 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
96 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
97 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
98 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
99 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
100 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
101 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
110 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
111 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
112 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
113 3300049655 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_B_0_drought Metagenome Rhizosphere
114 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
115 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
116 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
117 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
118 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
119 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
120 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
121 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
122 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
123 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
124 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
125 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
126 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
127 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
128 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
129 2744054611 Aldersonia kunmingensis DSM 45001 Isolate Rhizosphere
130 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
131 2643221692 Nocardia sp. Root136 Isolate Unclassified
132 2738543005 Rhodococcus sp. OK519 Isolate Unclassified
133 2738543011 Rhodococcus sp. OK611 Isolate Unclassified
134 2808606372 Agromyces sp. 23-23 Isolate Unclassified
135 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
136 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
137 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
138 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
139 2889300758 Rhodococcus sp. PvR099 Isolate Rhizosphere
140 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
141 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
142 2919713450 Nocardia kruczakiae 4272 Isolate Rhizosphere
143 2928142448 Prescottella equi DPS 2018 Isolate Unclassified
144 2939743619 Rhodococcus sp. PvR044 Isolate Rhizosphere
145 8054472261 Pseudonocardia terrae RS11V-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.83
Metatranscriptomes 0
Isolates 8.17

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.81
Nodule 0
Rhizoplane 3.37
Rhizosphere 85.1
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10005471 3300001979 Bacteria 5369
2 JGI25407J50210_10000052 3300003373 Bacteria 13657
3 JGI25407J50210_10005082 3300003373 Bacteria 3222
4 Ga0065714_10069588 3300005288 Bacteria 4167
5 Ga0070683_100002036 3300005329 Bacteria 15916
6 Ga0070682_100016622 3300005337 Bacteria 4281
7 Ga0070668_100084453 3300005347 Bacteria 2494
8 Ga0070668_100158928 3300005347 Bacteria 1832
9 Ga0070659_100030666 3300005366 Bacteria 4162
10 Ga0070710_10000006 3300005437 Bacteria 217422
11 Ga0070705_100000619 3300005440 Bacteria 20518
12 Ga0070662_100050955 3300005457 Bacteria 2988
13 Ga0070684_100077810 3300005535 Bacteria 2930
14 Ga0068853_100037416 3300005539 Bacteria 4129
15 Ga0068854_100040249 3300005578 Bacteria 3297
16 Ga0068859_100077910 3300005617 Bacteria 3356
17 Ga0068866_10003068 3300005718 Bacteria 6894
18 Ga0068861_100066324 3300005719 Bacteria 2782
19 Ga0068861_100070393 3300005719 Bacteria 2708
20 Ga0081455_10003318 3300005937 Bacteria 18593
21 Ga0081455_10010452 3300005937 Bacteria 9416
22 Ga0081455_10124655 3300005937 Bacteria 2024
23 Ga0081538_10000318 3300005981 Bacteria 55086
24 Ga0081538_10001277 3300005981 Bacteria 26150
25 Ga0081538_10011739 3300005981 Bacteria 7069
26 Ga0081538_10052665 3300005981 Bacteria 2429
27 Ga0081539_10000238 3300005985 Bacteria 129119
28 Ga0081539_10000472 3300005985 Bacteria 85180
29 Ga0075365_10005651 3300006038 Bacteria 6772
30 Ga0075363_100095254 3300006048 Bacteria 1642
31 Ga0075364_10082962 3300006051 Bacteria 2121
32 Ga0075432_10000662 3300006058 Bacteria 10545
33 Ga0075432_10002929 3300006058 Bacteria 5745
34 Ga0070712_100000978 3300006175 Bacteria 17209
35 Ga0075367_10010225 3300006178 Bacteria 4923
36 Ga0075367_10012304 3300006178 Bacteria 4558
37 Ga0075370_10036295 3300006353 Bacteria 2768
38 Ga0075428_100006173 3300006844 Bacteria 13333
39 Ga0075428_100008816 3300006844 Bacteria 11193
40 Ga0075430_100003431 3300006846 Bacteria 13250
41 Ga0075431_100006736 3300006847 Bacteria 11409
42 Ga0075431_100044471 3300006847 Bacteria 4581
43 Ga0075433_10000832 3300006852 Bacteria 21596
44 Ga0075433_10013609 3300006852 Bacteria 6623
45 Ga0075434_100000238 3300006871 Bacteria 38170
46 Ga0075434_100004773 3300006871 Bacteria 12273
47 Ga0075429_100004875 3300006880 Bacteria 11565
48 Ga0075429_100026653 3300006880 Bacteria 5019
49 Ga0068865_100182875 3300006881 Bacteria 1615
50 Ga0075436_100003893 3300006914 Bacteria 10231
51 Ga0097620_100077911 3300006931 Bacteria 3356
52 Ga0075435_100000224 3300007076 Bacteria 34538
53 Ga0075435_100005092 3300007076 Bacteria 9136
54 Ga0105240_10012146 3300009093 Bacteria 11919
55 Ga0105240_10343477 3300009093 Bacteria 1695
56 Ga0111539_10000095 3300009094 Bacteria 93635
57 Ga0114129_10001224 3300009147 Bacteria 34117
58 Ga0114129_10006841 3300009147 Bacteria 16205
59 Ga0114129_10021767 3300009147 Bacteria 9100
60 Ga0114129_10205709 3300009147 Bacteria 2663
61 Ga0114129_10372528 3300009147 Bacteria 1887
62 Ga0105243_10001381 3300009148 Bacteria 21530
63 Ga0105243_10140364 3300009148 Bacteria 2061
64 Ga0105249_10041745 3300009553 Bacteria 4170
65 Ga0105239_10083334 3300010375 Bacteria 3521
66 Ga0157372_10108432 3300013307 Bacteria 3178
67 Ga0182008_10094026 3300014497 Bacteria 1479
68 Ga0163161_10051105 3300017792 Bacteria 2993
69 Ga0213875_10000188 3300021388 Bacteria 63240
70 Ga0207692_10000001 3300025898 Bacteria 558345
71 Ga0207695_10065609 3300025913 Bacteria 3732
72 Ga0207693_10003006 3300025915 Bacteria 14589
73 Ga0207664_10075279 3300025929 Bacteria 2729
74 Ga0207706_10010487 3300025933 Bacteria 8467
75 Ga0207706_10047648 3300025933 Bacteria 3791
76 Ga0207686_10041749 3300025934 Bacteria 2799
77 Ga0207709_10000800 3300025935 Bacteria 24479
78 Ga0207709_10004747 3300025935 Bacteria 7802
79 Ga0207704_10101530 3300025938 Bacteria 1919
80 Ga0207661_10004623 3300025944 Bacteria 9646
81 Ga0207712_10007068 3300025961 Bacteria 7080
82 Ga0207712_10267218 3300025961 Bacteria 1390
83 Ga0207668_10069422 3300025972 Bacteria 2509
84 Ga0207639_10050004 3300026041 Bacteria 3173
85 Ga0207678_10062576 3300026067 Bacteria 3198
86 Ga0207708_10012589 3300026075 Bacteria 6308
87 Ga0207675_100055850 3300026118 Bacteria 3684
88 Ga0207428_10000102 3300027907 Bacteria 118940
89 Ga0207428_10001069 3300027907 Bacteria 30032
90 Ga0207428_10108287 3300027907 Bacteria 2140
91 Ga0307515_10178039 3300028794 Bacteria 2089
92 Ga0307512_10006668 3300030522 Bacteria 11628
93 Ga0307408_100016770 3300031548 Bacteria 4896
94 Ga0307408_100059959 3300031548 Bacteria 2772
95 Ga0307405_10009864 3300031731 Bacteria 4915
96 Ga0307405_10051532 3300031731 Bacteria 2554
97 Ga0307405_10109387 3300031731 Bacteria 1869
98 Ga0307413_10009778 3300031824 Bacteria 4608
99 Ga0307410_10008908 3300031852 Bacteria 5599
100 Ga0307410_10042781 3300031852 Bacteria 2996
101 Ga0307406_10000513 3300031901 Bacteria 22317
102 Ga0307406_10015628 3300031901 Bacteria 4396
103 Ga0307406_10087804 3300031901 Bacteria 2085
104 Ga0307406_10146772 3300031901 Bacteria 1677
105 Ga0307407_10005517 3300031903 Bacteria 5499
106 Ga0307407_10010694 3300031903 Bacteria 4337
107 Ga0307412_10063526 3300031911 Bacteria 2491
108 Ga0307409_100000229 3300031995 Bacteria 22532
109 Ga0307409_100003179 3300031995 Bacteria 8831
110 Ga0307409_100022737 3300031995 Bacteria 4326
111 Ga0307409_100154498 3300031995 Bacteria 1997
112 Ga0307416_100000046 3300032002 Bacteria 120916
113 Ga0307416_100188341 3300032002 Bacteria 1942
114 Ga0307414_10010766 3300032004 Bacteria 5330
115 Ga0307414_10050731 3300032004 Bacteria 2876
116 Ga0307414_10163392 3300032004 Bacteria 1771
117 Ga0307415_100000308 3300032126 Bacteria 21162
118 Ga0307415_100016533 3300032126 Bacteria 4401
119 Ga0307415_100042290 3300032126 Bacteria 3031
120 Ga0395900_0045944 3300037418 Bacteria 4498
121 Ga0395898_0097540 3300037466 Bacteria 2823
122 Ga0436364_1101040 3300037853 Bacteria 44426
123 Ga0395901_0013756 3300038443 Bacteria 8224
124 Ga0439436_0005084 3300041404 Bacteria 4029
125 Ga0439455_0010090 3300042012 Bacteria 2067
126 Ga0439457_000638 3300042014 Bacteria 10358
127 Ga0439463_000696 3300042016 Bacteria 9302
128 Ga0439463_029667 3300042016 Bacteria 1378
129 Ga0439435_0005605 3300042436 Bacteria 2771
130 Ga0439464_0003208 3300042439 Bacteria 4108
131 Ga0439440_0000430 3300042993 Bacteria 7041
132 Ga0466972_0009955 3300044658 Bacteria 4772
133 Ga0466965_0002138 3300044683 Bacteria 8306
134 Ga0466967_0174590 3300045976 Bacteria 2024
135 Ga0466967_0244319 3300045976 Bacteria 1713
136 Ga0495629_0096893 3300046459 Bacteria 2058
137 Ga0495631_0025745 3300046518 Bacteria 2706
138 Ga0495648_0006367 3300046524 Bacteria 9651
139 Ga0496101_0005596 3300048904 Bacteria 8020
140 Ga0496104_0000030 3300048907 Bacteria 201919
141 Ga0496105_0177623 3300048908 Bacteria 1744
142 Ga0496108_0041006 3300048911 Bacteria 3862
143 Ga0496109_0055477 3300048912 Bacteria 3615
144 Ga0496110_0004119 3300048913 Bacteria 11232
145 Ga0496111_0000041 3300048914 Bacteria 50756
146 Ga0496121_0007546 3300048924 Bacteria 13107
147 Ga0501031_0001151 3300049568 Bacteria 16104
148 Ga0501031_0119375 3300049568 Bacteria 1723
149 Ga0501033_0005770 3300049570 Bacteria 9744
150 Ga0501034_0017370 3300049571 Bacteria 7378
151 Ga0501034_0223773 3300049571 Bacteria 1833
152 Ga0501036_0204848 3300049572 Bacteria 1659
153 Ga0501037_0020126 3300049573 Bacteria 4928
154 Ga0501041_0016649 3300049577 Bacteria 4373
155 Ga0501041_0093506 3300049577 Bacteria 1857
156 Ga0501043_0000938 3300049579 Bacteria 25849
157 Ga0501046_0002839 3300049580 Bacteria 16124
158 Ga0501046_0239000 3300049580 Bacteria 1340
159 Ga0501070_0005636 3300049586 Bacteria 10680
160 Ga0501071_0013885 3300049587 Bacteria 5499
161 Ga0501071_0049494 3300049587 Bacteria 3026
162 Ga0501072_0053929 3300049588 Bacteria 3167
163 Ga0501072_0062325 3300049588 Bacteria 2942
164 Ga0501202_020949 3300049652 Bacteria 1303
165 Ga0501208_006812 3300049655 Bacteria 1474
166 Ga0501079_0213817 3300049741 Bacteria 1506
167 Ga0501080_0029648 3300049742 Bacteria 5093
168 Ga0501045_0119092 3300049824 Bacteria 1960
169 nmdc:mga03n38_25457_c1 3300050490 Bacteria 2430
170 nmdc:mga0yw44_7673_c1 3300050492 Bacteria 5324
171 nmdc:mga0yw44_82548_c1 3300050492 Bacteria 2017
172 nmdc:mga06z11_96585_c1 3300050494 Bacteria 1614
173 nmdc:mga05p37_19415_c1 3300050507 Bacteria 8223
174 nmdc:mga05p37_413434_c1 3300050507 Bacteria 1572
175 nmdc:mga05p37_6870_c1 3300050507 Bacteria 13412
176 nmdc:mga09592_3836_c1 3300050508 Bacteria 12102
177 nmdc:mga09592_3997_c1 3300050508 Bacteria 11887
178 nmdc:mga09592_68487_c1 3300050508 Bacteria 3010
179 nmdc:mga09592_87121_c1 3300050508 Bacteria 2665
180 nmdc:mga0qj67_145676_c1 3300050509 Bacteria 1920
181 nmdc:mga0qj67_2213_c1 3300050509 Bacteria 13818
182 nmdc:mga06r32_15895_c1 3300050510 Bacteria 6847
183 nmdc:mga06r32_3830_c1 3300050510 Bacteria 13464
184 nmdc:mga08y16_2872_c1 3300050511 Bacteria 17728
185 nmdc:mga08y16_54415_c1 3300050511 Bacteria 4182
186 nmdc:mga08y16_6630_c1 3300050511 Bacteria 12143
187 nmdc:mga0n895_21419_c1 3300050512 Bacteria 6045
188 nmdc:mga0n895_655_c1 3300050512 Bacteria 24168
189 nmdc:mga08x19_600_c1 3300050514 Bacteria 23378
190 nmdc:mga0a205_228_c1 3300050515 Bacteria 39737
191 Ga0501084_0181669 3300054114 Bacteria 1776
192 2744954787 2744054611 Bacteria 5611514
193 2552105123 2551306166 Bacteria 9731570
194 2644517194 2643221692 Bacteria 7282860
195 2739206194 2738543005 Bacteria 5278128
196 2739239095 2738543011 Bacteria 5731169
197 2808903461 2808606372 Bacteria 4649509
198 2809196364 2808606439 Bacteria 5952208
199 2812351470 2811994878 Bacteria 5992952
200 2821271634 2821268502 Bacteria 3750023
201 2833709959 2833709550 Bacteria 4008291
202 2889304049 2889300758 Bacteria 5690814
203 2917740204 2917736166 Bacteria 9690793
204 2919444012 2919443155 Bacteria 4072969
205 2919718199 2919713450 Bacteria 7431245
206 2928146601 2928142448 Bacteria 5288925
207 2939745557 2939743619 Bacteria 5762299
208 8054473341 8054472261 Bacteria 7464355
209 JGI24740J21852_10005471
210 JGI25407J50210_10000052
211 JGI25407J50210_10005082
212 Ga0065714_10069588
213 Ga0070683_100002036
214 Ga0070682_100016622
215 Ga0070668_100084453
216 Ga0070668_100158928
217 Ga0070659_100030666
218 Ga0070710_10000006
219 Ga0070705_100000619
220 Ga0070662_100050955
221 Ga0070684_100077810
222 Ga0068853_100037416
223 Ga0068854_100040249
224 Ga0068859_100077910
225 Ga0068866_10003068
226 Ga0068861_100066324
227 Ga0068861_100070393
228 Ga0081455_10003318
229 Ga0081455_10010452
230 Ga0081455_10124655
231 Ga0081538_10000318
232 Ga0081538_10001277
233 Ga0081538_10011739
234 Ga0081538_10052665
235 Ga0081539_10000238
236 Ga0081539_10000472
237 Ga0075365_10005651
238 Ga0075363_100095254
239 Ga0075364_10082962
240 Ga0075432_10000662
241 Ga0075432_10002929
242 Ga0070712_100000978
243 Ga0075367_10010225
244 Ga0075367_10012304
245 Ga0075370_10036295
246 Ga0075428_100006173
247 Ga0075428_100008816
248 Ga0075430_100003431
249 Ga0075431_100006736
250 Ga0075431_100044471
251 Ga0075433_10000832
252 Ga0075433_10013609
253 Ga0075434_100000238
254 Ga0075434_100004773
255 Ga0075429_100004875
256 Ga0075429_100026653
257 Ga0068865_100182875
258 Ga0075436_100003893
259 Ga0097620_100077911
260 Ga0075435_100000224
261 Ga0075435_100005092
262 Ga0105240_10012146
263 Ga0105240_10343477
264 Ga0111539_10000095
265 Ga0114129_10001224
266 Ga0114129_10006841
267 Ga0114129_10021767
268 Ga0114129_10205709
269 Ga0114129_10372528
270 Ga0105243_10001381
271 Ga0105243_10140364
272 Ga0105249_10041745
273 Ga0105239_10083334
274 Ga0157372_10108432
275 Ga0182008_10094026
276 Ga0163161_10051105
277 Ga0213875_10000188
278 Ga0207692_10000001
279 Ga0207695_10065609
280 Ga0207693_10003006
281 Ga0207664_10075279
282 Ga0207706_10010487
283 Ga0207706_10047648
284 Ga0207686_10041749
285 Ga0207709_10000800
286 Ga0207709_10004747
287 Ga0207704_10101530
288 Ga0207661_10004623
289 Ga0207712_10007068
290 Ga0207712_10267218
291 Ga0207668_10069422
292 Ga0207639_10050004
293 Ga0207678_10062576
294 Ga0207708_10012589
295 Ga0207675_100055850
296 Ga0207428_10000102
297 Ga0207428_10001069
298 Ga0207428_10108287
299 Ga0307515_10178039
300 Ga0307512_10006668
301 Ga0307408_100016770
302 Ga0307408_100059959
303 Ga0307405_10009864
304 Ga0307405_10051532
305 Ga0307405_10109387
306 Ga0307413_10009778
307 Ga0307410_10008908
308 Ga0307410_10042781
309 Ga0307406_10000513
310 Ga0307406_10015628
311 Ga0307406_10087804
312 Ga0307406_10146772
313 Ga0307407_10005517
314 Ga0307407_10010694
315 Ga0307412_10063526
316 Ga0307409_100000229
317 Ga0307409_100003179
318 Ga0307409_100022737
319 Ga0307409_100154498
320 Ga0307416_100000046
321 Ga0307416_100188341
322 Ga0307414_10010766
323 Ga0307414_10050731
324 Ga0307414_10163392
325 Ga0307415_100000308
326 Ga0307415_100016533
327 Ga0307415_100042290
328 Ga0395900_0045944
329 Ga0395898_0097540
330 Ga0436364_1101040
331 Ga0395901_0013756
332 Ga0439436_0005084
333 Ga0439455_0010090
334 Ga0439457_000638
335 Ga0439463_000696
336 Ga0439463_029667
337 Ga0439435_0005605
338 Ga0439464_0003208
339 Ga0439440_0000430
340 Ga0466972_0009955
341 Ga0466965_0002138
342 Ga0466967_0174590
343 Ga0466967_0244319
344 Ga0495629_0096893
345 Ga0495631_0025745
346 Ga0495648_0006367
347 Ga0496101_0005596
348 Ga0496104_0000030
349 Ga0496105_0177623
350 Ga0496108_0041006
351 Ga0496109_0055477
352 Ga0496110_0004119
353 Ga0496111_0000041
354 Ga0496121_0007546
355 Ga0501031_0001151
356 Ga0501031_0119375
357 Ga0501033_0005770
358 Ga0501034_0017370
359 Ga0501034_0223773
360 Ga0501036_0204848
361 Ga0501037_0020126
362 Ga0501041_0016649
363 Ga0501041_0093506
364 Ga0501043_0000938
365 Ga0501046_0002839
366 Ga0501046_0239000
367 Ga0501070_0005636
368 Ga0501071_0013885
369 Ga0501071_0049494
370 Ga0501072_0053929
371 Ga0501072_0062325
372 Ga0501202_020949
373 Ga0501208_006812
374 Ga0501079_0213817
375 Ga0501080_0029648
376 Ga0501045_0119092
377 nmdc:mga03n38_25457_c1
378 nmdc:mga0yw44_7673_c1
379 nmdc:mga0yw44_82548_c1
380 nmdc:mga06z11_96585_c1
381 nmdc:mga05p37_19415_c1
382 nmdc:mga05p37_413434_c1
383 nmdc:mga05p37_6870_c1
384 nmdc:mga09592_3836_c1
385 nmdc:mga09592_3997_c1
386 nmdc:mga09592_68487_c1
387 nmdc:mga09592_87121_c1
388 nmdc:mga0qj67_145676_c1
389 nmdc:mga0qj67_2213_c1
390 nmdc:mga06r32_15895_c1
391 nmdc:mga06r32_3830_c1
392 nmdc:mga08y16_2872_c1
393 nmdc:mga08y16_54415_c1
394 nmdc:mga08y16_6630_c1
395 nmdc:mga0n895_21419_c1
396 nmdc:mga0n895_655_c1
397 nmdc:mga08x19_600_c1
398 nmdc:mga0a205_228_c1
399 Ga0501084_0181669
400 2744954787
401 2552105123
402 2644517194
403 2739206194
404 2739239095
405 2808903461
406 2809196364
407 2812351470
408 2821271634
409 2833709959
410 2889304049
411 2917740204
412 2919444012
413 2919718199
414 2928146601
415 2939745557
416 8054473341

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06772

LtrA

Bacterial low temperature requirement A protein (LtrA)

40

406

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
5voz-assembly1.cif.gz_S yeast v-atpase in complex with legionella pneumophila effector sidk (rotational state 3) 0.6 202 342
6w8p-assembly1.cif.gz_A structure of membrane protein with ions 0.5783 22 390
7lf6-assembly1.cif.gz_B structure of lysosomal membrane protein 0.5769 22 398
6w8p-assembly1.cif.gz_B structure of membrane protein with ions 0.5671 22 394
5voz-assembly1.cif.gz_S yeast v-atpase in complex with legionella pneumophila effector sidk (rotational state 3) 0.5657 202 342
ID Description Score Start End Superfamily
af_A0A2R8QGP7_1291_1477_1.20.1410.10 Mainly Alpha;Up-down Bundle;I/LWEQ domain;I/LWEQ domain 0.5171 198 377 1.20.1410.10
af_Q71LX4_2207_2375_1.20.1410.10 Mainly Alpha;Up-down Bundle;I/LWEQ domain;I/LWEQ domain 0.5009 198 357 1.20.1410.10
af_A0A2R8QGP7_1291_1477_1.20.1410.10 Mainly Alpha;Up-down Bundle;I/LWEQ domain;I/LWEQ domain 0.49 198 377 1.20.1410.10
af_Q71LX4_2207_2375_1.20.1410.10 Mainly Alpha;Up-down Bundle;I/LWEQ domain;I/LWEQ domain 0.4775 198 357 1.20.1410.10
af_Q02328_671_873_1.20.1410.10 Mainly Alpha;Up-down Bundle;I/LWEQ domain;I/LWEQ domain 0.4654 202 384 1.20.1410.10
ID Description Score Start End GO Terms
AF-A0A4P8PXK8-F1-model_v4 Low temperature requirement protein A 0.9928 10 399 GO:0016020
AF-A0A6N8GKQ0-F1-model_v4 Low temperature requirement protein A 0.9915 9 400 GO:0016020
AF-A0A3S3AU39-F1-model_v4 Low temperature requirement protein A 0.9905 10 399 GO:0016020
AF-A0A4Q7V2A6-F1-model_v4 Low temperature requirement protein LtrA 0.9869 1 403 GO:0016020
AF-A0A3D5AGB8-F1-model_v4 Low temperature requirement protein A 0.9868 8 402 GO:0016020

Map