F318024

General Info

Members Datasets Scaffolds Average Seq Length
208 136 416 429

Family's Representative Sequence

Representative Sequence 3300031731|Ga0307405_10095340|Ga0307405_100953401
Length 527
Sequence MSLAGENLRLCEVYQLLPERIPAPSASARRLTTRVSQCRNTSTSQKTGDNGTGRLYPFWGRVQEIVTFSYKLVSTRSYRPWGGLQWFATSLALMAFALAAALVYSERDLGAPLWIVAALCAVALLAERQSVHITATTQMSVSALPILFAAVVYGPLPAMVVAASALMLDCGRPYTRWVIWTFSRSLVGGLAGVSASLLISEETSFGGLVVAVAAASVTEAVGDIVLNAITIALRRSGSFRDTAHAMARLMLSTVPLYTPVIAALAYSYRELSPWTVLLFFVPALAAQRLLTMYKEQARLVADLGAVNQRLERASLSFAGALVAALDARDQYTAGHSAVVAVYARDIAERLQLSKEEQQLAHLCGLLHDIGKVGLPAGLLEKPGALTLEERRRMEEHSAIGERILSKVEDYAEIAKIVRHHHERMDGNGYPDGLSAEDIPVISRIIGVADAYNAMTSGRPYRDAMPSRVARLRLAQAVGSQFDTTVVAAFEAILAQSSESYLAGARADFALEAQRHPALATKIALGFA

Samples

Sample ID Description Type Environment
1 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
7 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
10 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
11 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
12 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
17 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
22 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
23 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
24 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
25 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
26 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
28 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
29 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
30 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
31 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
32 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
38 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
39 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
40 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
41 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
42 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
43 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
44 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
45 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
46 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
47 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
48 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
64 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
65 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
66 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
67 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
68 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
69 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
70 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
71 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
72 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
73 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
74 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
75 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
76 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
77 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
78 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
79 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
80 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
81 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
82 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
83 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
84 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
85 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
86 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
87 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
88 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
89 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
90 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
91 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
92 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
93 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
94 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
95 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
96 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
97 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
98 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
99 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
100 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
101 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
115 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
116 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
117 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
118 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
119 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
120 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
121 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
122 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
123 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
124 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
125 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
127 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
128 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
129 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
130 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
131 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
132 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
133 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
134 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
135 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
136 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 12.98
Rhizosphere 87.02
Stem 0
Stem Tuber 0
Unclassified 26.44

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307405_10095340 3300031731 Unclassified 1981
2 JGI25407J50210_10001789 3300003373 Bacteria 4949
3 Ga0070683_100016827 3300005329 Bacteria 6451
4 Ga0070683_100020223 3300005329 Bacteria 5922
5 Ga0070682_100018255 3300005337 Bacteria 4098
6 Ga0070689_100025476 3300005340 Bacteria 4444
7 Ga0070688_100149921 3300005365 Bacteria 1593
8 Ga0070709_10020214 3300005434 Bacteria 3860
9 Ga0070711_100007221 3300005439 Bacteria 6749
10 Ga0068867_100015342 3300005459 Bacteria 5432
11 Ga0070685_10002997 3300005466 Bacteria 8624
12 Ga0070706_100039494 3300005467 Unclassified 4357
13 Ga0070706_100218177 3300005467 Unclassified 1780
14 Ga0070707_100019774 3300005468 Bacteria 6347
15 Ga0070698_100010898 3300005471 Bacteria 9671
16 Ga0070698_100013945 3300005471 Bacteria 8499
17 Ga0070698_100078805 3300005471 Bacteria 3292
18 Ga0070698_100132135 3300005471 Bacteria 2451
19 Ga0070699_100034732 3300005518 Archaea 4357
20 Ga0070684_100051075 3300005535 Unclassified 3592
21 Ga0070686_100051316 3300005544 Unclassified 2625
22 Ga0070696_100082766 3300005546 Bacteria 2276
23 Ga0070665_100203748 3300005548 Unclassified 1979
24 Ga0070704_100017277 3300005549 Bacteria 4584
25 Ga0068855_100291221 3300005563 Bacteria 1810
26 Ga0070664_100020619 3300005564 Bacteria 5429
27 Ga0068857_100008820 3300005577 Bacteria 8734
28 Ga0070702_100087877 3300005615 Bacteria 1878
29 Ga0081455_10026079 3300005937 Bacteria 5384
30 Ga0081538_10016803 3300005981 Bacteria 5587
31 Ga0081538_10044050 3300005981 Bacteria 2790
32 Ga0097621_100119221 3300006237 Unclassified 2236
33 Ga0075428_100097351 3300006844 Unclassified 3208
34 Ga0075430_100042277 3300006846 Bacteria 3854
35 Ga0075430_100135781 3300006846 Bacteria 2050
36 Ga0075434_100020322 3300006871 Bacteria 6439
37 Ga0068865_100000372 3300006881 Bacteria 24843
38 Ga0075436_100085662 3300006914 Bacteria 2188
39 Ga0075436_100100963 3300006914 Bacteria 2009
40 Ga0075435_100027599 3300007076 Unclassified 4443
41 Ga0105240_10100724 3300009093 Bacteria 3515
42 Ga0111539_10124942 3300009094 Bacteria 3015
43 Ga0105245_10150237 3300009098 Unclassified 2202
44 Ga0105245_10345085 3300009098 Bacteria 1473
45 Ga0114129_10032890 3300009147 Bacteria 7328
46 Ga0114129_10488169 3300009147 Bacteria 1610
47 Ga0105243_10000793 3300009148 Bacteria 30289
48 Ga0105243_10091887 3300009148 Unclassified 2501
49 Ga0105242_10028922 3300009176 Bacteria 4416
50 Ga0105249_10015182 3300009553 Bacteria 6816
51 Ga0105249_10060494 3300009553 Bacteria 3474
52 Ga0105249_10161315 3300009553 Unclassified 2167
53 Ga0105239_10134447 3300010375 Bacteria 2753
54 Ga0105239_10167485 3300010375 Unclassified 2457
55 Ga0157369_10090620 3300013105 Unclassified 3264
56 Ga0157374_10053225 3300013296 Bacteria 3773
57 Ga0157374_10063632 3300013296 Unclassified 3460
58 Ga0157378_10014422 3300013297 Bacteria 6920
59 Ga0157378_10136099 3300013297 Bacteria 2278
60 Ga0163162_10159152 3300013306 Bacteria 2380
61 Ga0157375_10002897 3300013308 Bacteria 14865
62 Ga0157375_10152696 3300013308 Unclassified 2446
63 Ga0163163_10122538 3300014325 Bacteria 2635
64 Ga0157376_10154187 3300014969 Bacteria 2075
65 Ga0157376_10246235 3300014969 Bacteria 1668
66 Ga0207642_10060049 3300025899 Bacteria 1761
67 Ga0207693_10162974 3300025915 Bacteria 1754
68 Ga0207663_10014609 3300025916 Bacteria 4306
69 Ga0207646_10012359 3300025922 Bacteria 8211
70 Ga0207686_10072827 3300025934 Unclassified 2215
71 Ga0207709_10003300 3300025935 Bacteria 9676
72 Ga0207709_10050454 3300025935 Bacteria 2545
73 Ga0207670_10029362 3300025936 Bacteria 3502
74 Ga0207669_10116661 3300025937 Bacteria 1802
75 Ga0207704_10009028 3300025938 Unclassified 4793
76 Ga0207704_10151759 3300025938 Unclassified 1636
77 Ga0207665_10024128 3300025939 Bacteria 4009
78 Ga0207661_10044488 3300025944 Plasmid 3509
79 Ga0207679_10008938 3300025945 Bacteria 6397
80 Ga0207708_10177101 3300026075 Bacteria 1692
81 Ga0207648_10121202 3300026089 Unclassified 2300
82 Ga0207683_10148536 3300026121 Unclassified 2115
83 Ga0307410_10002153 3300031852 Bacteria 9366
84 Ga0307406_10031203 3300031901 Bacteria 3243
85 Ga0307409_100001200 3300031995 Bacteria 12435
86 Ga0307416_100004196 3300032002 Bacteria 8643
87 Ga0307411_10056914 3300032005 Bacteria 2580
88 Ga0373951_0014424 3300035091 Bacteria 1777
89 Ga0373931_0038396 3300035691 Bacteria 2504
90 Ga0395899_0074648 3300037312 Unclassified 2477
91 Ga0395899_0158508 3300037312 Bacteria 1600
92 Ga0395900_0020676 3300037418 Bacteria 6726
93 Ga0395900_0061159 3300037418 Unclassified 3873
94 Ga0395900_0068212 3300037418 Bacteria 3654
95 Ga0395900_0106813 3300037418 Bacteria 2876
96 Ga0395900_0130942 3300037418 Unclassified 2571
97 Ga0395900_0227743 3300037418 Bacteria 1876
98 Ga0395900_0251217 3300037418 Unclassified 1770
99 Ga0395898_0004845 3300037466 Bacteria 14623
100 Ga0395898_0012196 3300037466 Bacteria 8890
101 Ga0395898_0052969 3300037466 Bacteria 3963
102 Ga0395898_0169966 3300037466 Bacteria 2084
103 Ga0395905_0028871 3300037471 Bacteria 5228
104 Ga0395905_0039220 3300037471 Bacteria 4443
105 Ga0395905_0072365 3300037471 Bacteria 3232
106 Ga0395905_0142677 3300037471 Bacteria 2253
107 Ga0395901_0032752 3300038443 Bacteria 5362
108 Ga0395901_0058005 3300038443 Bacteria 4027
109 Ga0395901_0096430 3300038443 Bacteria 3099
110 Ga0395901_0120889 3300038443 Unclassified 2752
111 Ga0395901_0142447 3300038443 Bacteria 2519
112 Ga0395901_0147967 3300038443 Unclassified 2468
113 Ga0395901_0151572 3300038443 Bacteria 2436
114 Ga0395901_0228311 3300038443 Unclassified 1944
115 Ga0395901_0282560 3300038443 Unclassified 1724
116 Ga0466967_0152361 3300045976 Bacteria 2162
117 Ga0495582_0042484 3300046473 Unclassified 2504
118 Ga0495644_0032094 3300046523 Bacteria 1985
119 Ga0495663_0027484 3300046525 Unclassified 1670
120 Ga0495666_0048687 3300046526 Unclassified 2041
121 Ga0495598_0037988 3300046537 Bacteria 1392
122 Ga0495668_0066976 3300046616 Unclassified 1976
123 Ga0495661_0050040 3300046665 Unclassified 2532
124 Ga0495658_0065544 3300046683 Unclassified 2096
125 Ga0495581_0047608 3300047315 Bacteria 2478
126 Ga0495636_0009617 3300047318 Unclassified 3808
127 Ga0496100_0011120 3300048903 Bacteria 5111
128 Ga0496100_0018987 3300048903 Bacteria 4092
129 Ga0496100_0102211 3300048903 Bacteria 1977
130 Ga0496101_0028843 3300048904 Bacteria 3878
131 Ga0496102_0007380 3300048905 Bacteria 9391
132 Ga0496102_0160235 3300048905 Unclassified 2116
133 Ga0496102_0254964 3300048905 Bacteria 1654
134 Ga0496103_0058770 3300048906 Bacteria 2389
135 Ga0496103_0075686 3300048906 Unclassified 2111
136 Ga0496104_0108210 3300048907 Bacteria 2664
137 Ga0496104_0205887 3300048907 Bacteria 1879
138 Ga0496104_0237838 3300048907 Unclassified 1733
139 Ga0496105_0171342 3300048908 Bacteria 1779
140 Ga0496106_0026697 3300048909 Bacteria 4300
141 Ga0496107_0088316 3300048910 Unclassified 2263
142 Ga0496107_0089289 3300048910 Bacteria 2250
143 Ga0496109_0001268 3300048912 Bacteria 20981
144 Ga0496109_0196344 3300048912 Unclassified 1897
145 Ga0496110_0008267 3300048913 Bacteria 8365
146 Ga0496110_0164620 3300048913 Unclassified 2011
147 Ga0496111_0023082 3300048914 Bacteria 4363
148 Ga0496111_0169763 3300048914 Bacteria 1621
149 Ga0496112_0166084 3300048915 Unclassified 2173
150 Ga0496113_0076606 3300048916 Bacteria 2555
151 Ga0496114_0022161 3300048917 Bacteria 5174
152 Ga0496114_0125614 3300048917 Unclassified 2211
153 Ga0496115_0123740 3300048918 Bacteria 2129
154 Ga0501031_0034048 3300049568 Bacteria 3323
155 Ga0501032_0086888 3300049569 Bacteria 2077
156 Ga0501033_0042075 3300049570 Bacteria 3406
157 Ga0501034_0022822 3300049571 Bacteria 6374
158 Ga0501036_0020915 3300049572 Bacteria 5495
159 Ga0501037_0010023 3300049573 Bacteria 6950
160 Ga0501038_0028691 3300049574 Unclassified 4942
161 Ga0501039_0019103 3300049575 Bacteria 5257
162 Ga0501041_0027116 3300049577 Bacteria 3451
163 Ga0501042_0012030 3300049578 Bacteria 5852
164 Ga0501046_0026344 3300049580 Unclassified 4749
165 Ga0501047_0008593 3300049581 Bacteria 9640
166 Ga0501048_0092470 3300049582 Unclassified 2133
167 Ga0501067_0005111 3300049583 Bacteria 7290
168 Ga0501067_0009458 3300049583 Bacteria 5401
169 Ga0501067_0041524 3300049583 Bacteria 2554
170 Ga0501068_0029714 3300049584 Bacteria 3238
171 Ga0501068_0041023 3300049584 Bacteria 2780
172 Ga0501069_0005934 3300049585 Bacteria 6369
173 Ga0501069_0031608 3300049585 Unclassified 2913
174 Ga0501069_0056758 3300049585 Bacteria 2182
175 Ga0501069_0084441 3300049585 Unclassified 1791
176 Ga0501071_0066346 3300049587 Bacteria 2623
177 Ga0501072_0068115 3300049588 Bacteria 2810
178 Ga0501072_0076554 3300049588 Bacteria 2647
179 Ga0501075_0021078 3300049591 Unclassified 4749
180 Ga0501076_0021645 3300049592 Unclassified 4934
181 Ga0501076_0065954 3300049592 Bacteria 2888
182 Ga0501076_0099337 3300049592 Bacteria 2345
183 Ga0501076_0102670 3300049592 Unclassified 2305
184 Ga0501079_0002566 3300049741 Bacteria 13191
185 Ga0501079_0166535 3300049741 Bacteria 1719
186 Ga0501080_0124515 3300049742 Bacteria 2387
187 Ga0501081_0001782 3300049743 Bacteria 13340
188 Ga0501083_0010242 3300049744 Bacteria 6607
189 Ga0501035_0021046 3300049822 Bacteria 5995
190 Ga0501045_0013690 3300049824 Bacteria 5733
191 Ga0501045_0132941 3300049824 Bacteria 1850
192 nmdc:mga05p37_782_c1 3300050507 Bacteria 35364
193 nmdc:mga09592_3792_c1 3300050508 Bacteria 12164
194 nmdc:mga0qj67_11264_c1 3300050509 Bacteria 6698
195 nmdc:mga08y16_97771_c1 3300050511 Bacteria 3057
196 nmdc:mga0n895_377460_c1 3300050512 Bacteria 1435
197 nmdc:mga0n895_69379_c1 3300050512 Bacteria 3492
198 nmdc:mga08x19_32603_c1 3300050514 Bacteria 3284
199 nmdc:mga0a205_247835_c1 3300050515 Bacteria 1661
200 nmdc:mga0a205_38299_c1 3300050515 Plasmid 4612
201 nmdc:mga0a205_40687_c1 3300050515 Bacteria 4475
202 Ga0501084_0064126 3300054114 Unclassified 3075
203 Ga0501084_0208483 3300054114 Bacteria 1649
204 Ga0501082_0017041 3300060353 Bacteria 6257
205 Ga0530510_0007396 3300061734 Bacteria 7644
206 Ga0530510_0020086 3300061734 Unclassified 4749
207 Ga0530510_0034075 3300061734 Bacteria 3668
208 Ga0530510_0053116 3300061734 Unclassified 2928
209 Ga0307405_10095340
210 JGI25407J50210_10001789
211 Ga0070683_100016827
212 Ga0070683_100020223
213 Ga0070682_100018255
214 Ga0070689_100025476
215 Ga0070688_100149921
216 Ga0070709_10020214
217 Ga0070711_100007221
218 Ga0068867_100015342
219 Ga0070685_10002997
220 Ga0070706_100039494
221 Ga0070706_100218177
222 Ga0070707_100019774
223 Ga0070698_100010898
224 Ga0070698_100013945
225 Ga0070698_100078805
226 Ga0070698_100132135
227 Ga0070699_100034732
228 Ga0070684_100051075
229 Ga0070686_100051316
230 Ga0070696_100082766
231 Ga0070665_100203748
232 Ga0070704_100017277
233 Ga0068855_100291221
234 Ga0070664_100020619
235 Ga0068857_100008820
236 Ga0070702_100087877
237 Ga0081455_10026079
238 Ga0081538_10016803
239 Ga0081538_10044050
240 Ga0097621_100119221
241 Ga0075428_100097351
242 Ga0075430_100042277
243 Ga0075430_100135781
244 Ga0075434_100020322
245 Ga0068865_100000372
246 Ga0075436_100085662
247 Ga0075436_100100963
248 Ga0075435_100027599
249 Ga0105240_10100724
250 Ga0111539_10124942
251 Ga0105245_10150237
252 Ga0105245_10345085
253 Ga0114129_10032890
254 Ga0114129_10488169
255 Ga0105243_10000793
256 Ga0105243_10091887
257 Ga0105242_10028922
258 Ga0105249_10015182
259 Ga0105249_10060494
260 Ga0105249_10161315
261 Ga0105239_10134447
262 Ga0105239_10167485
263 Ga0157369_10090620
264 Ga0157374_10053225
265 Ga0157374_10063632
266 Ga0157378_10014422
267 Ga0157378_10136099
268 Ga0163162_10159152
269 Ga0157375_10002897
270 Ga0157375_10152696
271 Ga0163163_10122538
272 Ga0157376_10154187
273 Ga0157376_10246235
274 Ga0207642_10060049
275 Ga0207693_10162974
276 Ga0207663_10014609
277 Ga0207646_10012359
278 Ga0207686_10072827
279 Ga0207709_10003300
280 Ga0207709_10050454
281 Ga0207670_10029362
282 Ga0207669_10116661
283 Ga0207704_10009028
284 Ga0207704_10151759
285 Ga0207665_10024128
286 Ga0207661_10044488
287 Ga0207679_10008938
288 Ga0207708_10177101
289 Ga0207648_10121202
290 Ga0207683_10148536
291 Ga0307410_10002153
292 Ga0307406_10031203
293 Ga0307409_100001200
294 Ga0307416_100004196
295 Ga0307411_10056914
296 Ga0373951_0014424
297 Ga0373931_0038396
298 Ga0395899_0074648
299 Ga0395899_0158508
300 Ga0395900_0020676
301 Ga0395900_0061159
302 Ga0395900_0068212
303 Ga0395900_0106813
304 Ga0395900_0130942
305 Ga0395900_0227743
306 Ga0395900_0251217
307 Ga0395898_0004845
308 Ga0395898_0012196
309 Ga0395898_0052969
310 Ga0395898_0169966
311 Ga0395905_0028871
312 Ga0395905_0039220
313 Ga0395905_0072365
314 Ga0395905_0142677
315 Ga0395901_0032752
316 Ga0395901_0058005
317 Ga0395901_0096430
318 Ga0395901_0120889
319 Ga0395901_0142447
320 Ga0395901_0147967
321 Ga0395901_0151572
322 Ga0395901_0228311
323 Ga0395901_0282560
324 Ga0466967_0152361
325 Ga0495582_0042484
326 Ga0495644_0032094
327 Ga0495663_0027484
328 Ga0495666_0048687
329 Ga0495598_0037988
330 Ga0495668_0066976
331 Ga0495661_0050040
332 Ga0495658_0065544
333 Ga0495581_0047608
334 Ga0495636_0009617
335 Ga0496100_0011120
336 Ga0496100_0018987
337 Ga0496100_0102211
338 Ga0496101_0028843
339 Ga0496102_0007380
340 Ga0496102_0160235
341 Ga0496102_0254964
342 Ga0496103_0058770
343 Ga0496103_0075686
344 Ga0496104_0108210
345 Ga0496104_0205887
346 Ga0496104_0237838
347 Ga0496105_0171342
348 Ga0496106_0026697
349 Ga0496107_0088316
350 Ga0496107_0089289
351 Ga0496109_0001268
352 Ga0496109_0196344
353 Ga0496110_0008267
354 Ga0496110_0164620
355 Ga0496111_0023082
356 Ga0496111_0169763
357 Ga0496112_0166084
358 Ga0496113_0076606
359 Ga0496114_0022161
360 Ga0496114_0125614
361 Ga0496115_0123740
362 Ga0501031_0034048
363 Ga0501032_0086888
364 Ga0501033_0042075
365 Ga0501034_0022822
366 Ga0501036_0020915
367 Ga0501037_0010023
368 Ga0501038_0028691
369 Ga0501039_0019103
370 Ga0501041_0027116
371 Ga0501042_0012030
372 Ga0501046_0026344
373 Ga0501047_0008593
374 Ga0501048_0092470
375 Ga0501067_0005111
376 Ga0501067_0009458
377 Ga0501067_0041524
378 Ga0501068_0029714
379 Ga0501068_0041023
380 Ga0501069_0005934
381 Ga0501069_0031608
382 Ga0501069_0056758
383 Ga0501069_0084441
384 Ga0501071_0066346
385 Ga0501072_0068115
386 Ga0501072_0076554
387 Ga0501075_0021078
388 Ga0501076_0021645
389 Ga0501076_0065954
390 Ga0501076_0099337
391 Ga0501076_0102670
392 Ga0501079_0002566
393 Ga0501079_0166535
394 Ga0501080_0124515
395 Ga0501081_0001782
396 Ga0501083_0010242
397 Ga0501035_0021046
398 Ga0501045_0013690
399 Ga0501045_0132941
400 nmdc:mga05p37_782_c1
401 nmdc:mga09592_3792_c1
402 nmdc:mga0qj67_11264_c1
403 nmdc:mga08y16_97771_c1
404 nmdc:mga0n895_377460_c1
405 nmdc:mga0n895_69379_c1
406 nmdc:mga08x19_32603_c1
407 nmdc:mga0a205_247835_c1
408 nmdc:mga0a205_38299_c1
409 nmdc:mga0a205_40687_c1
410 Ga0501084_0064126
411 Ga0501084_0208483
412 Ga0501082_0017041
413 Ga0530510_0007396
414 Ga0530510_0020086
415 Ga0530510_0034075
416 Ga0530510_0053116

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13487

HD_5

HD domain

319

485

0.97

PF01966

HD

HD domain

332

454

0.94

PF08668

HDOD

HDOD domain

313

422

0.8

PF07155

ECF-ribofla_trS

ECF-type riboflavin transporter, S component

112

251

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
4r8z-assembly1.cif.gz_B crystal structure of pa4781 hd-gyp domain from pseudomonas aeruginosa at 2.2a resolution showing a bi-metallic ni ion center 0.8635 236 437
4r8z-assembly1.cif.gz_B crystal structure of pa4781 hd-gyp domain from pseudomonas aeruginosa at 2.2a resolution showing a bi-metallic ni ion center 0.8045 236 437
4mdz-assembly1.cif.gz_A crystal structure of a hd-gyp domain (a cyclic-di-gmp phosphodiesterase) containing a tri-nuclear metal centre 0.7863 209 436
3tm8-assembly2.cif.gz_B "bd1817, a hdg""y""p protein from bdellovibrio bacteriovorus" 0.7531 247 423
5jsz-assembly2.cif.gz_G folate ecf transporter: apo state 0.7188 45 199
ID Description Score Start End Superfamily
4r8zB00 Mainly Alpha;Orthogonal Bundle;Hypothetical protein af1432;Hypothetical protein af1432 0.8635 236 437 1.10.3210.10
4me4A02 Mainly Alpha;Orthogonal Bundle;Hypothetical protein af1432;Hypothetical protein af1432 0.8101 245 444 1.10.3210.10
4r8zB00 Mainly Alpha;Orthogonal Bundle;Hypothetical protein af1432;Hypothetical protein af1432 0.8045 236 437 1.10.3210.10
4me4A02 Mainly Alpha;Orthogonal Bundle;Hypothetical protein af1432;Hypothetical protein af1432 0.7985 245 444 1.10.3210.10
3tm8B00 Mainly Alpha;Orthogonal Bundle;Hypothetical protein af1432;Hypothetical protein af1432 0.7531 247 423 1.10.3210.10
ID Description Score Start End GO Terms
AF-A0A7V5KU14-F1-model_v4 HD-GYP domain-containing protein 0.988 287 423 GO:0016787
AF-A0A2V8PB04-F1-model_v4 HD-GYP domain-containing protein 0.982 268 424
AF-A0A7Y3DJT7-F1-model_v4 HD-GYP domain-containing protein 0.9798 249 423
AF-A0A1W9W1V5-F1-model_v4 Metal-dependent phosphohydrolase 0.9787 247 420 GO:0016787
AF-A0A0D1XTD0-F1-model_v4 HDIG domain-containing protein (Histidine kinase) 0.9785 264 418 GO:0016301

Map