F317903

General Info

Members Datasets Scaffolds Average Seq Length
208 154 197 379

Family's Representative Sequence

Representative Sequence 3300025924|Ga0207694_10068772|Ga0207694_100687722
Length 438
Sequence MGDIAKTHPTKKGPHLSGPSLVQLPGIETGTEITLSCGNVEPTLTSLLSNNHAGGCRGKVMKKILVTGGAGFIGWHLCRTLLQRGWDVTVLDILSRQVHGDDRRPNLSPDVNFIRGDVCDEAQLGAALEGQDVVVHLAAETGTGQSMYELLLYERVNLHGTALLMQLILQQKSKTIQKVVVASSRAVYGEGAYRCEEHGVVFPKGRTAEDMTAGIFDPRCPMCQRVCEPAPTDENCPFSPSSYYGITKQTQEQTVLTVAKTLGLSAYALRYQNVYGPGQSLKNPYTGILAVFSNQARADKPINVFEDGQESRDFVYVQDVVDATMRCIEREGVHVDRYNVGGGERITVEQVAKTVVSFFESNSPIAISGDYREGDIRHNIADLSYAAREIGYRPKWNFTNGVFEFLQWANSQEHADNGFSRSMDELKRHQLLKSVSIL

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
3 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
4 2599185212 Pseudomonas sp. NFACC15-1 Isolate Rhizoplane
5 2599185322 Pseudomonas sp. NFACC14 Isolate Rhizoplane
6 2651869719 Genome Sequence of Pseudomonas fluorescens UM270 Isolate Rhizosphere
7 2900634093 Paraburkholderia dipogonis ICMP 19430 Isolate Unclassified
8 2945924605 Chryseobacterium ginsenosidimutans W1I9 Isolate Rhizosphere
9 2945928738 Pseudomonas cedrina W1I11 Isolate Rhizosphere
10 2993372514 Chryseobacterium sp. SLBN-27 Isolate Rhizosphere
11 2993480792 Chryseobacterium nepalense SLBN-92 Isolate Rhizosphere
12 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
13 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
14 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
15 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
16 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
17 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
18 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
19 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
20 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
21 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
22 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
23 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
24 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
25 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
26 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
27 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
28 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
29 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
30 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
31 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
32 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
33 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
34 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
35 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
36 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
37 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
38 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
39 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
40 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
41 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
42 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
43 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
44 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
45 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
46 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
47 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
50 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
51 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
52 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
53 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
54 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
55 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
56 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
57 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
58 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
59 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
60 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
61 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
62 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
64 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
65 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
66 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
68 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
69 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
70 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
86 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
87 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
88 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
89 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
90 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
91 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
92 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
93 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
94 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
95 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
96 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
97 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
98 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
99 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
100 3300044666 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1E Metagenome Unclassified
101 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
102 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
103 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
104 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
105 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
106 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
107 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
108 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
109 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
110 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
111 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
112 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
113 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
114 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
115 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
116 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
117 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
118 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
119 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
120 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
121 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
122 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
123 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
124 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
125 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
126 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
127 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
128 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
129 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
130 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
131 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
132 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
133 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
134 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
135 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
136 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
137 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
139 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
140 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
141 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
143 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
144 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
145 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
147 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
148 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
149 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
150 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
151 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
152 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
153 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
154 642555113 Paraburkholderia phytofirmans PsJN Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 94.71
Metatranscriptomes 0
Isolates 5.29

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.62
Nodule 2.88
Rhizoplane 1.92
Rhizosphere 71.15
Stem 0
Stem Tuber 0
Unclassified 14.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_439480 2162886007 Bacteria 3229
2 JGI25156J39149_1000244 3300002705 Bacteria 37731
3 JGI25150J39212_1000098 3300002774 Bacteria 50282
4 JGI25153J46596_10000055 3300003215 Bacteria 135518
5 rootH1_10023044 3300003316 Bacteria 5368
6 rootH2_10014191 3300003320 Bacteria 13488
7 rootH2_10113991 3300003320 Bacteria 1597
8 rootL2_10014732 3300003322 Bacteria 6640
9 Ga0055530_10002575 3300003791 Bacteria 11498
10 Ga0055531_10000431 3300003794 Bacteria 39766
11 Ga0055541_1000435 3300003841 Bacteria 12089
12 Ga0065714_10064927 3300005288 Bacteria 15327
13 Ga0065704_10074646 3300005289 Bacteria 6112
14 Ga0070658_10000978 3300005327 Bacteria 24540
15 Ga0070658_10004776 3300005327 Bacteria 11022
16 Ga0070658_10059096 3300005327 Bacteria 3122
17 Ga0070658_10135529 3300005327 Unclassified 2054
18 Ga0070680_100036858 3300005336 Bacteria 3951
19 Ga0070708_100082113 3300005445 Bacteria 2919
20 Ga0070663_100005382 3300005455 Bacteria 7603
21 Ga0070681_10264841 3300005458 Unclassified 1630
22 Ga0070698_100001124 3300005471 Bacteria 29558
23 Ga0070679_100029016 3300005530 Bacteria 5457
24 Ga0068853_100022020 3300005539 Bacteria 5317
25 Ga0068853_100118420 3300005539 Bacteria 2360
26 Ga0070686_100029345 3300005544 Unclassified 3345
27 Ga0068855_100066511 3300005563 Bacteria 4202
28 Ga0068855_100087212 3300005563 Bacteria 3608
29 Ga0068855_100140016 3300005563 Bacteria 2759
30 Ga0068857_100010350 3300005577 Bacteria 8103
31 Ga0068857_100040626 3300005577 Bacteria 4125
32 Ga0068854_100063892 3300005578 Bacteria 2673
33 Ga0068856_100071881 3300005614 Bacteria 3425
34 Ga0068852_100004575 3300005616 Bacteria 9794
35 Ga0068852_100028507 3300005616 Bacteria 4572
36 Ga0068858_100000601 3300005842 Bacteria 37610
37 Ga0075365_10006830 3300006038 Bacteria 6325
38 Ga0075370_10012466 3300006353 Bacteria 4493
39 Ga0075428_100000295 3300006844 Bacteria 48665
40 Ga0075430_100004356 3300006846 Bacteria 11950
41 Ga0075431_100023152 3300006847 Bacteria 6352
42 Ga0075429_100002868 3300006880 Bacteria 14599
43 Ga0079104_1000346 3300006946 Bacteria 55624
44 Ga0079104_1004538 3300006946 Bacteria 5893
45 Ga0099826_10018486 3300006948 Bacteria 5258
46 Ga0105240_10000228 3300009093 Bacteria 111877
47 Ga0105240_10002012 3300009093 Bacteria 33513
48 Ga0105240_10002543 3300009093 Bacteria 29256
49 Ga0111539_10000037 3300009094 Bacteria 143023
50 Ga0114129_10008016 3300009147 Bacteria 15040
51 Ga0105237_10000518 3300009545 Bacteria 54382
52 Ga0105238_10002553 3300009551 Bacteria 18190
53 Ga0105238_10080969 3300009551 Bacteria 3236
54 Ga0105239_10000872 3300010375 Bacteria 42900
55 Ga0105239_10017198 3300010375 Bacteria 7994
56 Ga0105239_10119657 3300010375 Unclassified 2923
57 Ga0157371_10201775 3300013102 Bacteria 1426
58 Ga0157370_10007181 3300013104 Bacteria 12154
59 Ga0157370_10121549 3300013104 Bacteria 2438
60 Ga0157369_10007103 3300013105 Bacteria 12913
61 Ga0157369_10045273 3300013105 Bacteria 4787
62 Ga0157369_10085556 3300013105 Bacteria 3369
63 Ga0157369_10149240 3300013105 Bacteria 2471
64 Ga0157374_10005911 3300013296 Bacteria 10336
65 Ga0157378_10141891 3300013297 Bacteria 2231
66 Ga0157372_10002681 3300013307 Bacteria 19265
67 Ga0157372_10003261 3300013307 Bacteria 17534
68 Ga0157372_10063249 3300013307 Bacteria 4148
69 Ga0182008_10000188 3300014497 Bacteria 48848
70 Ga0182008_10001043 3300014497 Bacteria 19210
71 Ga0182006_1000014 3300015261 Bacteria 340159
72 Ga0182006_1000392 3300015261 Bacteria 35983
73 Ga0182006_1009183 3300015261 Bacteria 4442
74 Ga0182007_10000565 3300015262 Bacteria 21758
75 Ga0182005_1000537 3300015265 Bacteria 19134
76 Ga0209566_100200 3300025225 Bacteria 61991
77 Ga0207425_1000005 3300025245 Bacteria 900502
78 Ga0209759_1000028 3300025256 Bacteria 298755
79 Ga0209129_1000423 3300025258 Bacteria 32153
80 Ga0209676_1001385 3300025292 Bacteria 23618
81 Ga0209025_1000873 3300025294 Bacteria 47373
82 Ga0209564_1005621 3300025295 Bacteria 7050
83 Ga0209758_1000002 3300025297 Bacteria 1400310
84 Ga0209050_1000801 3300025298 Bacteria 44325
85 Ga0209051_1006787 3300025303 Bacteria 6378
86 Ga0209257_1000558 3300025304 Bacteria 63862
87 Ga0207705_10000766 3300025909 Bacteria 26452
88 Ga0207705_10002693 3300025909 Bacteria 13599
89 Ga0207705_10007194 3300025909 Bacteria 8198
90 Ga0207695_10000333 3300025913 Bacteria 111885
91 Ga0207695_10001548 3300025913 Bacteria 37825
92 Ga0207695_10003321 3300025913 Bacteria 22803
93 Ga0207695_10011731 3300025913 Bacteria 10584
94 Ga0207671_10002732 3300025914 Bacteria 18452
95 Ga0207694_10068772 3300025924 Bacteria 2765
96 Ga0207661_10187699 3300025944 Bacteria 1811
97 Ga0207667_10128992 3300025949 Bacteria 2604
98 Ga0207640_10092763 3300025981 Unclassified 2096
99 Ga0207703_10000362 3300026035 Bacteria 48617
100 Ga0207678_10005108 3300026067 Bacteria 11771
101 Ga0207702_10097836 3300026078 Bacteria 2583
102 Ga0207674_10037764 3300026116 Bacteria 5019
103 Ga0207698_10001130 3300026142 Bacteria 15528
104 Ga0207698_10052203 3300026142 Bacteria 3131
105 Ga0209281_1000018 3300027111 Bacteria 579091
106 Ga0209281_1003160 3300027111 Bacteria 5697
107 Ga0209282_1067196 3300027666 Bacteria 1970
108 Ga0207428_10001068 3300027907 Bacteria 30064
109 Ga0307515_10040684 3300028794 Bacteria 7341
110 Ga0307515_10057424 3300028794 Bacteria 5632
111 Ga0265331_10000006 3300031250 Bacteria 418907
112 Ga0307408_100004066 3300031548 Bacteria 9975
113 Ga0265313_10057386 3300031595 Bacteria 1838
114 Ga0265314_10003243 3300031711 Bacteria 15904
115 Ga0307412_10011457 3300031911 Bacteria 5140
116 Ga0307414_10001318 3300032004 Bacteria 12827
117 Ga0307414_10087672 3300032004 Bacteria 2301
118 Ga0307411_10000144 3300032005 Bacteria 22580
119 Ga0307411_10022165 3300032005 Unclassified 3734
120 Ga0307510_10051069 3300033180 Unclassified 4378
121 Ga0373937_0216884 3300036401 Bacteria 1801
122 Ga0395900_0040048 3300037418 Unclassified 4829
123 Ga0395900_0124931 3300037418 Bacteria 2639
124 Ga0395898_0018294 3300037466 Bacteria 7145
125 Ga0395898_0154107 3300037466 Bacteria 2198
126 Ga0466977_0101069 3300044666 Bacteria 1893
127 Ga0453683_0092272 3300044673 Bacteria 1898
128 Ga0466961_0003657 3300044693 Bacteria 9589
129 Ga0453684_0004617 3300044712 Bacteria 28677
130 Ga0466970_0000206 3300044765 Bacteria 28771
131 Ga0466959_0276375 3300045049 Bacteria 1154
132 Ga0495591_001186 3300046458 Bacteria 17034
133 Ga0495650_0000258 3300046471 Bacteria 102564
134 Ga0495650_0003290 3300046471 Bacteria 11934
135 Ga0495650_0005063 3300046471 Bacteria 8719
136 Ga0495650_0006788 3300046471 Bacteria 7063
137 Ga0495605_0003797 3300046474 Bacteria 8964
138 Ga0495584_0001674 3300046491 Bacteria 13017
139 Ga0495585_0002052 3300046492 Bacteria 14837
140 Ga0495607_0001545 3300046501 Bacteria 20153
141 Ga0495606_0069119 3300046507 Bacteria 2232
142 Ga0495620_0000934 3300046515 Bacteria 17975
143 Ga0495632_0001326 3300046519 Bacteria 20836
144 Ga0495637_0013265 3300046520 Bacteria 3916
145 Ga0495643_0002598 3300046522 Bacteria 14079
146 Ga0495648_0001529 3300046524 Bacteria 22626
147 Ga0495633_0000266 3300046558 Bacteria 61340
148 Ga0495633_0000745 3300046558 Bacteria 29393
149 Ga0495633_0008451 3300046558 Bacteria 5790
150 Ga0495625_0002628 3300046660 Bacteria 19190
151 Ga0495649_0001074 3300046694 Bacteria 21342
152 Ga0495589_0001383 3300046794 Bacteria 14114
153 Ga0495589_0037049 3300046794 Bacteria 2444
154 Ga0495683_0008269 3300047323 Bacteria 5577
155 Ga0495681_0006855 3300047470 Bacteria 7399
156 Ga0495686_0000317 3300047472 Bacteria 80748
157 Ga0496111_0042275 3300048914 Bacteria 3272
158 Ga0496114_0065225 3300048917 Bacteria 3051
159 Ga0496116_0081670 3300048919 Bacteria 2003
160 Ga0496118_0001738 3300048921 Bacteria 31643
161 Ga0496118_0155977 3300048921 Bacteria 1420
162 Ga0496121_0000188 3300048924 Bacteria 138221
163 Ga0496121_0001565 3300048924 Bacteria 38210
164 Ga0496121_0043569 3300048924 Bacteria 3885
165 Ga0496121_0048688 3300048924 Bacteria 3604
166 Ga0496122_0003546 3300048925 Bacteria 20414
167 Ga0496123_0000794 3300048926 Bacteria 50999
168 Ga0496124_0003212 3300048927 Bacteria 20185
169 Ga0496125_0001231 3300048928 Bacteria 38314
170 Ga0496125_0004639 3300048928 Bacteria 15696
171 Ga0496125_0004748 3300048928 Bacteria 15486
172 Ga0496125_0006760 3300048928 Bacteria 12321
173 Ga0496125_0009937 3300048928 Bacteria 9673
174 Ga0496126_0000624 3300048929 Bacteria 66411
175 Ga0496126_0000773 3300048929 Bacteria 57790
176 Ga0496126_0001012 3300048929 Bacteria 47876
177 Ga0501032_0029950 3300049569 Bacteria 3733
178 Ga0501033_0000716 3300049570 Bacteria 30429
179 Ga0501034_0005723 3300049571 Bacteria 13511
180 Ga0501036_0026786 3300049572 Bacteria 4870
181 Ga0501037_0007732 3300049573 Bacteria 7866
182 Ga0501038_0054265 3300049574 Bacteria 3447
183 Ga0501047_0008366 3300049581 Bacteria 9765
184 Ga0501070_0051390 3300049586 Bacteria 3422
185 Ga0501074_0106841 3300049590 Bacteria 2004
186 Ga0501080_0125893 3300049742 Bacteria 2373
187 Ga0501035_0001900 3300049822 Bacteria 20989
188 Ga0501044_0006579 3300049823 Bacteria 12824
189 Ga0501044_0026461 3300049823 Bacteria 6139
190 nmdc:mga07m45_23165_c1 3300050496 Bacteria 3393
191 nmdc:mga07m45_259_c1 3300050496 Bacteria 21467
192 nmdc:mga05p37_33201_c1 3300050507 Bacteria 6320
193 nmdc:mga09592_125540_c1 3300050508 Unclassified 2206
194 nmdc:mga0qj67_9912_c1 3300050509 Bacteria 7105
195 nmdc:mga06r32_37864_c1 3300050510 Bacteria 4564
196 nmdc:mga08y16_29526_c1 3300050511 Bacteria 5776
197 Ga0500616_0001342 3300053153 Bacteria 24067

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300013307 Ga0157372_10063249 Ga0157372_100632492 319
2 3300044712 Ga0453684_0004617 Ga0453684_0004617_20468_21538 326
3 3300053153 Ga0500616_0001342 Ga0500616_0001342_13635_14720 332
4 3300005445 Ga0070708_100082113 Ga0070708_1000821132 334
5 3300005471 Ga0070698_100001124 Ga0070698_10000112419 334
6 3300005327 Ga0070658_10135529 Ga0070658_101355292 335
7 3300010375 Ga0105239_10119657 Ga0105239_101196572 335
8 3300005327 Ga0070658_10000978 Ga0070658_1000097813 342
9 3300025909 Ga0207705_10000766 Ga0207705_1000076610 342
10 3300025909 Ga0207705_10002693 Ga0207705_100026939 342
11 3300026142 Ga0207698_10001130 Ga0207698_1000113012 342
12 3300005544 Ga0070686_100029345 Ga0070686_1000293452 344
13 3300005327 Ga0070658_10059096 Ga0070658_100590963 345
14 3300005336 Ga0070680_100036858 Ga0070680_1000368582 345
15 3300005530 Ga0070679_100029016 Ga0070679_1000290163 345
16 3300005563 Ga0068855_100066511 Ga0068855_1000665113 345
17 3300005616 Ga0068852_100028507 Ga0068852_1000285073 345
18 3300006844 Ga0075428_100000295 Ga0075428_10000029519 345
19 3300006846 Ga0075430_100004356 Ga0075430_1000043568 345
20 3300006847 Ga0075431_100023152 Ga0075431_1000231526 345
21 3300006880 Ga0075429_100002868 Ga0075429_1000028688 345
22 3300009094 Ga0111539_10000037 Ga0111539_1000003728 345
23 3300009147 Ga0114129_10008016 Ga0114129_1000801610 345
24 3300025944 Ga0207661_10187699 Ga0207661_101876992 345
25 3300027907 Ga0207428_10001068 Ga0207428_1000106825 345
26 3300031548 Ga0307408_100004066 Ga0307408_1000040667 345
27 3300031911 Ga0307412_10011457 Ga0307412_100114573 345
28 3300032005 Ga0307411_10022165 Ga0307411_100221651 345
29 3300037418 Ga0395900_0124931 Ga0395900_0124931_841_1971 345
30 3300050507 nmdc:mga05p37_33201_c1 nmdc:mga05p37_33201_c1_4725_5861 345
31 3300050508 nmdc:mga09592_125540_c1 nmdc:mga09592_125540_c1_251_1387 345
32 3300050509 nmdc:mga0qj67_9912_c1 nmdc:mga0qj67_9912_c1_899_2035 345
33 3300050510 nmdc:mga06r32_37864_c1 nmdc:mga06r32_37864_c1_935_2071 345
34 3300050511 nmdc:mga08y16_29526_c1 nmdc:mga08y16_29526_c1_1027_2163 345
35 iso_pu_bacteria 2599185212 2599611670 345
36 iso_pu_bacteria 2599185322 2600057618 345
37 iso_pu_bacteria 2651869719 2652543574 345
38 iso_pu_bacteria 2900634093 2900639943 345
39 iso_pu_bacteria 2945928738 2945929002 345
40 iso_pu_bacteria 642555113 642617320 345
41 3300005458 Ga0070681_10264841 Ga0070681_102648411 346
42 3300005539 Ga0068853_100022020 Ga0068853_1000220202 346
43 3300005614 Ga0068856_100071881 Ga0068856_1000718813 346
44 3300009093 Ga0105240_10000228 Ga0105240_1000022833 346
45 3300009551 Ga0105238_10080969 Ga0105238_100809692 346
46 3300010375 Ga0105239_10017198 Ga0105239_100171985 346
47 3300025913 Ga0207695_10000333 Ga0207695_1000033334 346
48 3300025924 Ga0207694_10068772 Ga0207694_100687722 346
49 3300026078 Ga0207702_10097836 Ga0207702_100978362 346
50 3300037418 Ga0395900_0040048 Ga0395900_0040048_1655_2785 346
51 3300037466 Ga0395898_0154107 Ga0395898_0154107_98_1228 346
52 3300048929 Ga0496126_0001012 Ga0496126_0001012_20746_21879 346
53 3300003320 rootH2_10014191 rootH2_1001419113 347
54 3300005327 Ga0070658_10004776 Ga0070658_100047766 347
55 3300005455 Ga0070663_100005382 Ga0070663_1000053823 347
56 3300005539 Ga0068853_100118420 Ga0068853_1001184202 347
57 3300005563 Ga0068855_100087212 Ga0068855_1000872124 347
58 3300005577 Ga0068857_100040626 Ga0068857_1000406263 347
59 3300005578 Ga0068854_100063892 Ga0068854_1000638922 347
60 3300005616 Ga0068852_100004575 Ga0068852_1000045755 347
61 3300005842 Ga0068858_100000601 Ga0068858_10000060123 347
62 3300006353 Ga0075370_10012466 Ga0075370_100124663 347
63 3300009093 Ga0105240_10002012 Ga0105240_1000201218 347
64 3300009093 Ga0105240_10002543 Ga0105240_1000254320 347
65 3300009551 Ga0105238_10002553 Ga0105238_1000255310 347
66 3300013104 Ga0157370_10007181 Ga0157370_100071816 347
67 3300013105 Ga0157369_10007103 Ga0157369_100071033 347
68 3300013105 Ga0157369_10045273 Ga0157369_100452732 347
69 3300013105 Ga0157369_10085556 Ga0157369_100855563 347
70 3300013296 Ga0157374_10005911 Ga0157374_100059113 347
71 3300013307 Ga0157372_10003261 Ga0157372_100032616 347
72 3300014497 Ga0182008_10000188 Ga0182008_1000018843 347
73 3300015261 Ga0182006_1000014 Ga0182006_100001497 347
74 3300025909 Ga0207705_10007194 Ga0207705_100071944 347
75 3300025913 Ga0207695_10001548 Ga0207695_1000154817 347
76 3300025913 Ga0207695_10011731 Ga0207695_100117317 347
77 3300025914 Ga0207671_10002732 Ga0207671_100027329 347
78 3300025949 Ga0207667_10128992 Ga0207667_101289922 347
79 3300025981 Ga0207640_10092763 Ga0207640_100927632 347
80 3300026035 Ga0207703_10000362 Ga0207703_1000036226 347
81 3300026067 Ga0207678_10005108 Ga0207678_100051087 347
82 3300026116 Ga0207674_10037764 Ga0207674_100377643 347
83 3300026142 Ga0207698_10052203 Ga0207698_100522032 347
84 3300028794 Ga0307515_10040684 Ga0307515_100406843 347
85 3300031250 Ga0265331_10000006 Ga0265331_10000006122 347
86 3300031595 Ga0265313_10057386 Ga0265313_100573862 347
87 3300031711 Ga0265314_10003243 Ga0265314_1000324312 347
88 3300036401 Ga0373937_0216884 Ga0373937_0216884_352_1488 347
89 3300037466 Ga0395898_0018294 Ga0395898_0018294_5184_6317 347
90 3300044666 Ga0466977_0101069 Ga0466977_0101069_222_1376 347
91 3300044673 Ga0453683_0092272 Ga0453683_0092272_564_1697 347
92 3300045049 Ga0466959_0276375 Ga0466959_0276375_17_1144 347
93 3300046471 Ga0495650_0000258 Ga0495650_0000258_80300_81448 347
94 3300046794 Ga0495589_0037049 Ga0495589_0037049_734_1882 347
95 3300047323 Ga0495683_0008269 Ga0495683_0008269_2887_4035 347
96 3300048914 Ga0496111_0042275 Ga0496111_0042275_1827_2975 347
97 3300048919 Ga0496116_0081670 Ga0496116_0081670_742_1890 347
98 3300048921 Ga0496118_0155977 Ga0496118_0155977_89_1219 347
99 3300048924 Ga0496121_0001565 Ga0496121_0001565_32951_34099 347
100 3300048924 Ga0496121_0048688 Ga0496121_0048688_1546_2676 347
101 3300048928 Ga0496125_0001231 Ga0496125_0001231_21559_22689 347
102 3300048928 Ga0496125_0004639 Ga0496125_0004639_13742_14890 347
103 3300048928 Ga0496125_0004748 Ga0496125_0004748_1199_2329 347
104 3300048929 Ga0496126_0000624 Ga0496126_0000624_47351_48505 347
105 3300049823 Ga0501044_0026461 Ga0501044_0026461_2784_3929 347
106 3300050496 nmdc:mga07m45_23165_c1 nmdc:mga07m45_23165_c1_1750_2883 347
107 3300050496 nmdc:mga07m45_259_c1 nmdc:mga07m45_259_c1_18329_19462 347
108 iso_pu_bacteria 2585428187 2588231270 347
109 iso_pu_bacteria 2945924605 2945928409 347
110 3300002774 JGI25150J39212_1000098 JGI25150J39212_100009844 348
111 3300003215 JGI25153J46596_10000055 JGI25153J46596_1000005592 348
112 3300003791 Ga0055530_10002575 Ga0055530_100025759 348
113 3300003794 Ga0055531_10000431 Ga0055531_1000043120 348
114 3300005288 Ga0065714_10064927 Ga0065714_1006492712 348
115 3300005563 Ga0068855_100140016 Ga0068855_1001400162 348
116 3300009545 Ga0105237_10000518 Ga0105237_1000051810 348
117 3300010375 Ga0105239_10000872 Ga0105239_1000087210 348
118 3300013102 Ga0157371_10201775 Ga0157371_102017752 348
119 3300013307 Ga0157372_10002681 Ga0157372_100026816 348
120 3300025245 Ga0207425_1000005 Ga0207425_1000005608 348
121 3300025258 Ga0209129_1000423 Ga0209129_10004238 348
122 3300025292 Ga0209676_1001385 Ga0209676_100138517 348
123 3300025294 Ga0209025_1000873 Ga0209025_100087320 348
124 3300025297 Ga0209758_1000002 Ga0209758_1000002736 348
125 3300025298 Ga0209050_1000801 Ga0209050_100080124 348
126 3300025303 Ga0209051_1006787 Ga0209051_10067873 348
127 3300025304 Ga0209257_1000558 Ga0209257_100055823 348
128 3300025913 Ga0207695_10003321 Ga0207695_100033216 348
129 3300033180 Ga0307510_10051069 Ga0307510_100510694 348
130 3300046458 Ga0495591_001186 Ga0495591_001186_8349_9482 348
131 3300046471 Ga0495650_0005063 Ga0495650_0005063_6678_7817 348
132 3300046694 Ga0495649_0001074 Ga0495649_0001074_8453_9586 348
133 3300048927 Ga0496124_0003212 Ga0496124_0003212_11756_12889 348
134 3300048928 Ga0496125_0009937 Ga0496125_0009937_3832_4965 348
135 iso_pu_bacteria 2585428157 2588106784 348
136 iso_pu_bacteria 2993480792 2993483259 348
137 3300002705 JGI25156J39149_1000244 JGI25156J39149_100024410 349
138 3300003322 rootL2_10014732 rootL2_100147323 349
139 3300003841 Ga0055541_1000435 Ga0055541_10004359 349
140 3300005577 Ga0068857_100010350 Ga0068857_1000103502 349
141 3300006946 Ga0079104_1000346 Ga0079104_100034614 349
142 3300006946 Ga0079104_1004538 Ga0079104_10045385 349
143 3300006948 Ga0099826_10018486 Ga0099826_100184866 349
144 3300013105 Ga0157369_10149240 Ga0157369_101492402 349
145 3300013297 Ga0157378_10141891 Ga0157378_101418912 349
146 3300014497 Ga0182008_10001043 Ga0182008_100010439 349
147 3300015261 Ga0182006_1000392 Ga0182006_100039221 349
148 3300015261 Ga0182006_1009183 Ga0182006_10091832 349
149 3300015262 Ga0182007_10000565 Ga0182007_1000056512 349
150 3300015265 Ga0182005_1000537 Ga0182005_10005378 349
151 3300025225 Ga0209566_100200 Ga0209566_10020043 349
152 3300025256 Ga0209759_1000028 Ga0209759_100002885 349
153 3300025295 Ga0209564_1005621 Ga0209564_10056213 349
154 3300027111 Ga0209281_1000018 Ga0209281_1000018381 349
155 3300027111 Ga0209281_1003160 Ga0209281_10031605 349
156 3300027666 Ga0209282_1067196 Ga0209282_10671962 349
157 3300028794 Ga0307515_10057424 Ga0307515_100574246 349
158 3300032004 Ga0307414_10001318 Ga0307414_1000131812 349
159 3300032005 Ga0307411_10000144 Ga0307411_1000014412 349
160 3300044693 Ga0466961_0003657 Ga0466961_0003657_513_1655 349
161 3300044765 Ga0466970_0000206 Ga0466970_0000206_13421_14563 349
162 3300046471 Ga0495650_0003290 Ga0495650_0003290_176_1363 349
163 3300046471 Ga0495650_0006788 Ga0495650_0006788_870_2009 349
164 3300046474 Ga0495605_0003797 Ga0495605_0003797_3448_4635 349
165 3300046491 Ga0495584_0001674 Ga0495584_0001674_10572_11759 349
166 3300046492 Ga0495585_0002052 Ga0495585_0002052_6606_7793 349
167 3300046501 Ga0495607_0001545 Ga0495607_0001545_15541_16728 349
168 3300046507 Ga0495606_0069119 Ga0495606_0069119_616_1803 349
169 3300046515 Ga0495620_0000934 Ga0495620_0000934_5952_7139 349
170 3300046520 Ga0495637_0013265 Ga0495637_0013265_109_1296 349
171 3300046524 Ga0495648_0001529 Ga0495648_0001529_10629_11816 349
172 3300046558 Ga0495633_0000745 Ga0495633_0000745_17541_18728 349
173 3300046794 Ga0495589_0001383 Ga0495589_0001383_6647_7834 349
174 3300047470 Ga0495681_0006855 Ga0495681_0006855_2372_3559 349
175 3300048921 Ga0496118_0001738 Ga0496118_0001738_14100_15236 349
176 3300048924 Ga0496121_0000188 Ga0496121_0000188_16859_17998 349
177 3300048924 Ga0496121_0043569 Ga0496121_0043569_1064_2251 349
178 3300048925 Ga0496122_0003546 Ga0496122_0003546_2871_4007 349
179 3300048926 Ga0496123_0000794 Ga0496123_0000794_20396_21532 349
180 3300048928 Ga0496125_0006760 Ga0496125_0006760_10718_11905 349
181 3300048929 Ga0496126_0000773 Ga0496126_0000773_46437_47576 349
182 3300003316 rootH1_10023044 rootH1_100230444 351
183 3300006038 Ga0075365_10006830 Ga0075365_100068305 351
184 3300013104 Ga0157370_10121549 Ga0157370_101215492 351
185 3300032004 Ga0307414_10087672 Ga0307414_100876723 351
186 3300046519 Ga0495632_0001326 Ga0495632_0001326_4383_5513 351
187 3300046522 Ga0495643_0002598 Ga0495643_0002598_2581_3711 351
188 3300046558 Ga0495633_0000266 Ga0495633_0000266_9552_10682 351
189 3300046558 Ga0495633_0008451 Ga0495633_0008451_53_1183 351
190 3300046660 Ga0495625_0002628 Ga0495625_0002628_17749_18879 351
191 3300047472 Ga0495686_0000317 Ga0495686_0000317_69618_70748 351
192 3300048917 Ga0496114_0065225 Ga0496114_0065225_124_1260 351
193 2162886007 SwRhRL2b_contig_439480 SwRhRL2b_0967.00001910 352
194 3300003320 rootH2_10113991 rootH2_101139911 352
195 3300005289 Ga0065704_10074646 Ga0065704_100746465 352
196 3300049569 Ga0501032_0029950 Ga0501032_0029950_2072_3211 352
197 3300049570 Ga0501033_0000716 Ga0501033_0000716_21847_22986 352
198 3300049571 Ga0501034_0005723 Ga0501034_0005723_3839_4978 352
199 3300049572 Ga0501036_0026786 Ga0501036_0026786_2133_3272 352
200 3300049573 Ga0501037_0007732 Ga0501037_0007732_2944_4083 352
201 3300049574 Ga0501038_0054265 Ga0501038_0054265_1765_2904 352
202 3300049581 Ga0501047_0008366 Ga0501047_0008366_1596_2735 352
203 3300049586 Ga0501070_0051390 Ga0501070_0051390_1299_2438 352
204 3300049590 Ga0501074_0106841 Ga0501074_0106841_67_1206 352
205 3300049742 Ga0501080_0125893 Ga0501080_0125893_1087_2226 352
206 3300049822 Ga0501035_0001900 Ga0501035_0001900_3492_4631 352
207 3300049823 Ga0501044_0006579 Ga0501044_0006579_6080_7219 352
208 iso_pu_bacteria 2993372514 2993376498 352

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

221

341

0.95

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

64

205

0.93

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

65

204

0.9

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

226

405

0.84

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

65

198

0.83

PF13460

NAD_binding_10

NAD(P)H-binding

68

211

0.79

PF07993

NAD_binding_4

Male sterility protein

66

300

0.78

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

64

194

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
6kv9-assembly1.cif.gz_A-2 moee5 in complex with udp-glucuronic acid and nad 0.929 3 330
6kvc-assembly1.cif.gz_A-2 moee5 in complex with udp-glucose and nad 0.9243 3 330
4zrn-assembly1.cif.gz_B crystal structure of udp-glucose 4-epimerase (tm0509) with udp-glucose from hyperthermophilic eubacterium thermotoga maritima 0.918 2 330
6kv9-assembly1.cif.gz_A-2 moee5 in complex with udp-glucuronic acid and nad 0.917 3 330
6zlk-assembly2.cif.gz_B equilibrium structure of udp-glucuronic acid 4-epimerase from bacillus cereus in complex with udp-glucuronic acid/udp-galacturonic acid and nad 0.9141 2 330
ID Description Score Start End Superfamily
af_O15229_1_369_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9602 2 33 3.50.50.60
5nahA01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9318 1 33 3.50.50.60
2jaeB01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9309 2 33 3.50.50.60
af_Q0JEC9_1_74_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9303 2 33 3.40.50.720
af_A0A1D6E3F3_39_301_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9236 2 33 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A3D4JXF1-F1-model_v4 Epimerase 0.9835 2 279
AF-A0A2T7WYJ1-F1-model_v4 Epimerase 0.9741 1 352
AF-A0A2T7WYJ1-F1-model_v4 Epimerase 0.9713 1 352
AF-A0A1Q9N0B0-F1-model_v4 NAD-dependent epimerase/dehydratase 0.9667 167 352
AF-V6XUY0-F1-model_v4 deleted 0.9647 1 334

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