F317043

General Info

Members Datasets Scaffolds Average Seq Length
207 122 416 97

Family's Representative Sequence

Representative Sequence 3300049661|Ga0501217_340809|Ga0501217_340809_78_404
Length 108
Sequence MEERTFVSANAFCTHHRIEIAFIHSLHDYGLIEVTSAEEDLLLPREQLEALEKMVRLHYDLNINLEGIDAIYNLLQRMEILQREMKDLRSTLRLYERESLTDTTDVHG

Samples

Sample ID Description Type Environment
1 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
4 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
5 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
8 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
9 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
10 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
11 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
12 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
13 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
14 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
15 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
16 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
17 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
18 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
19 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
20 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
21 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
22 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
23 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
24 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
25 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
28 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
29 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
30 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
31 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
32 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
33 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
34 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
35 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
36 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
37 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
40 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
41 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
42 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
43 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
44 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
45 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
46 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
47 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
48 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
49 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
50 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
51 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
52 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
53 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
54 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
55 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
56 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
57 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
58 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
59 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
85 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
86 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
87 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
88 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
89 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
90 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
91 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
92 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
93 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
94 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
95 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
96 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
97 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
98 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
99 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
100 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
108 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
109 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
110 3300049773 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_B_4_control Metagenome Rhizosphere
111 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
112 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
113 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
114 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
115 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
116 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
117 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
118 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
119 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
120 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
121 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
122 2738541278 Niastella sp. CF465 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.52
Metatranscriptomes 0
Isolates 0.48

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.7
Nodule 0
Rhizoplane 0.97
Rhizosphere 82.61
Stem 0
Stem Tuber 0
Unclassified 17.87

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501217_340809 3300049661 Bacteria 503
2 JGI24737J22298_10165928 3300001990 Bacteria 652
3 JGI25158J39367_1021612 3300002739 Bacteria 779
4 JGI25159J45721_1047212 3300002987 Bacteria 602
5 rootH1_10037171 3300003316 Bacteria 13751
6 rootH1_10154004 3300003316 Unclassified 1916
7 rootH2_10096150 3300003320 Bacteria 2521
8 rootL2_10113920 3300003322 Bacteria 3866
9 rootL2_10187590 3300003322 Bacteria 4078
10 rootH1_10000888 3300003323 Bacteria 41861
11 rootH1_10028305 3300003316 Bacteria 1446
12 rootH1_10028305 3300003323 Bacteria 15223
13 rootH1_10030805 3300003323 Bacteria 24277
14 rootH1_10092913 3300003316 Bacteria 1989
15 rootH1_10092913 3300003323 Unclassified 2532
16 rootH1_10143107 3300003323 Unclassified 2573
17 rootH1_10283107 3300003323 Bacteria 1539
18 JGI25160J50197_1007932 3300003354 Bacteria 4091
19 Ga0065712_10146879 3300005290 Unclassified 1401
20 Ga0065712_10178422 3300005290 Bacteria 1205
21 Ga0070658_10034184 3300005327 Bacteria 4091
22 Ga0070658_10215680 3300005327 Bacteria 1622
23 Ga0070658_10305876 3300005327 Bacteria 1356
24 Ga0070683_100016564 3300005329 Bacteria 6503
25 Ga0070683_101076184 3300005329 Bacteria 772
26 Ga0070670_100051160 3300005331 Bacteria 3549
27 Ga0070670_101730912 3300005331 Bacteria 575
28 Ga0070661_100063291 3300005344 Bacteria 2717
29 Ga0070661_101638194 3300005344 Unclassified 544
30 Ga0070668_101948508 3300005347 Bacteria 541
31 Ga0070675_100057580 3300005354 Bacteria 3205
32 Ga0070671_100322416 3300005355 Bacteria 1317
33 Ga0070671_100881184 3300005355 Unclassified 781
34 Ga0070671_100936416 3300005355 Bacteria 757
35 Ga0070673_100294134 3300005364 Bacteria 1428
36 Ga0070673_100418881 3300005364 Unclassified 1200
37 Ga0070688_100476606 3300005365 Bacteria 937
38 Ga0070663_100923765 3300005455 Unclassified 755
39 Ga0070662_100164886 3300005457 Bacteria 1736
40 Ga0068867_100648311 3300005459 Bacteria 926
41 Ga0070684_100054934 3300005535 Bacteria 3470
42 Ga0070684_100550060 3300005535 Bacteria 1071
43 Ga0070684_100982587 3300005535 Bacteria 792
44 Ga0070684_101044612 3300005535 Bacteria 767
45 Ga0068853_100196811 3300005539 Bacteria 1833
46 Ga0070672_100503380 3300005543 Unclassified 1048
47 Ga0068855_100612056 3300005563 Bacteria 1174
48 Ga0070664_100019224 3300005564 Bacteria 5619
49 Ga0070664_100708234 3300005564 Bacteria 938
50 Ga0068857_100310748 3300005577 Bacteria 1454
51 Ga0068857_100504868 3300005577 Bacteria 1135
52 Ga0068857_102206958 3300005577 Bacteria 540
53 Ga0068857_102422813 3300005577 Bacteria 515
54 Ga0068856_100100901 3300005614 Bacteria 2879
55 Ga0070702_100536123 3300005615 Bacteria 866
56 Ga0068852_100192081 3300005616 Bacteria 1927
57 Ga0068852_100266973 3300005616 Bacteria 1645
58 Ga0068852_100309930 3300005616 Bacteria 1530
59 Ga0068852_100672792 3300005616 Bacteria 1044
60 Ga0068852_101552264 3300005616 Bacteria 684
61 Ga0068864_102465430 3300005618 Bacteria 526
62 Ga0068851_10222766 3300005834 Unclassified 1060
63 Ga0068851_10333554 3300005834 Bacteria 879
64 Ga0068863_100340536 3300005841 Unclassified 1459
65 Ga0068860_100042855 3300005843 Bacteria 4319
66 Ga0070716_101533809 3300006173 Bacteria 545
67 Ga0097621_100976964 3300006237 Bacteria 791
68 Ga0105240_10307602 3300009093 Bacteria 1811
69 Ga0105240_11464916 3300009093 Unclassified 716
70 Ga0105241_11887276 3300009174 Bacteria 585
71 Ga0105242_10449879 3300009176 Unclassified 1214
72 Ga0105237_10050413 3300009545 Bacteria 4182
73 Ga0105237_11197377 3300009545 Bacteria 766
74 Ga0105249_10051286 3300009553 Bacteria 3763
75 Ga0105239_10490544 3300010375 Bacteria 1396
76 Ga0105239_13245281 3300010375 Bacteria 529
77 Ga0157373_10296298 3300013100 Bacteria 1147
78 Ga0157371_10000401 3300013102 Bacteria 54323
79 Ga0157371_10001940 3300013102 Bacteria 20595
80 Ga0157371_10011240 3300013102 Bacteria 6916
81 Ga0157371_10152811 3300013102 Bacteria 1646
82 Ga0157371_10180032 3300013102 Bacteria 1512
83 Ga0157371_10311315 3300013102 Bacteria 1141
84 Ga0157370_10185733 3300013104 Bacteria 1930
85 Ga0157370_10555767 3300013104 Bacteria 1052
86 Ga0157370_11297857 3300013104 Bacteria 656
87 Ga0157369_10056087 3300013105 Bacteria 4251
88 Ga0157369_10615991 3300013105 Unclassified 1120
89 Ga0157369_10661971 3300013105 Bacteria 1076
90 Ga0157369_10869989 3300013105 Bacteria 925
91 Ga0157374_10001748 3300013296 Bacteria 18242
92 Ga0157374_10261518 3300013296 Bacteria 1704
93 Ga0157374_10478032 3300013296 Bacteria 1249
94 Ga0157378_10386697 3300013297 Bacteria 1375
95 Ga0157378_11170316 3300013297 Bacteria 808
96 Ga0157378_11337852 3300013297 Unclassified 758
97 Ga0163162_10000120 3300013306 Bacteria 69255
98 Ga0163162_10001935 3300013306 Bacteria 19469
99 Ga0163162_10306692 3300013306 Bacteria 1720
100 Ga0163162_10819353 3300013306 Unclassified 1047
101 Ga0157372_10017158 3300013307 Bacteria 7772
102 Ga0157372_10030413 3300013307 Bacteria 5909
103 Ga0157372_10060614 3300013307 Bacteria 4234
104 Ga0157372_10098629 3300013307 Bacteria 3333
105 Ga0157372_10146771 3300013307 Unclassified 2720
106 Ga0157372_10428295 3300013307 Bacteria 1542
107 Ga0157372_11700279 3300013307 Bacteria 726
108 Ga0157372_12278405 3300013307 Bacteria 622
109 Ga0157372_13455562 3300013307 Unclassified 502
110 Ga0157375_10280453 3300013308 Unclassified 1829
111 Ga0163163_10003321 3300014325 Bacteria 13645
112 Ga0163163_10242746 3300014325 Bacteria 1851
113 Ga0157379_11782520 3300014968 Bacteria 604
114 Ga0157376_11313290 3300014969 Bacteria 753
115 Ga0209436_100584 3300025208 Bacteria 15640
116 Ga0209130_1003640 3300025284 Bacteria 6388
117 Ga0207426_1000148 3300025302 Bacteria 190030
118 Ga0207656_10220951 3300025321 Unclassified 921
119 Ga0207656_10497210 3300025321 Bacteria 619
120 Ga0207647_10085960 3300025904 Bacteria 1880
121 Ga0207705_10086735 3300025909 Bacteria 2288
122 Ga0207705_10090455 3300025909 Bacteria 2241
123 Ga0207695_10006035 3300025913 Bacteria 15824
124 Ga0207671_10036504 3300025914 Bacteria 3645
125 Ga0207657_10410697 3300025919 Bacteria 1064
126 Ga0207649_10065967 3300025920 Bacteria 2293
127 Ga0207650_10023791 3300025925 Bacteria 4349
128 Ga0207650_10250516 3300025925 Bacteria 1434
129 Ga0207650_11380398 3300025925 Bacteria 599
130 Ga0207659_10409470 3300025926 Bacteria 1136
131 Ga0207690_10716959 3300025932 Bacteria 823
132 Ga0207706_10000521 3300025933 Bacteria 40903
133 Ga0207691_10767403 3300025940 Unclassified 811
134 Ga0207661_10964547 3300025944 Bacteria 785
135 Ga0207661_11820742 3300025944 Bacteria 554
136 Ga0207679_10637508 3300025945 Bacteria 963
137 Ga0207667_10034761 3300025949 Bacteria 5410
138 Ga0207667_11025656 3300025949 Bacteria 811
139 Ga0207651_10309450 3300025960 Unclassified 1317
140 Ga0207712_10042707 3300025961 Bacteria 3124
141 Ga0207639_10609603 3300026041 Bacteria 1007
142 Ga0207639_10720380 3300026041 Unclassified 926
143 Ga0207678_10639639 3300026067 Bacteria 934
144 Ga0207702_10041661 3300026078 Unclassified 3851
145 Ga0207641_10317277 3300026088 Unclassified 1477
146 Ga0207641_10581283 3300026088 Bacteria 1095
147 Ga0207676_11795800 3300026095 Bacteria 612
148 Ga0207674_10371617 3300026116 Bacteria 1382
149 Ga0207674_10413040 3300026116 Bacteria 1304
150 Ga0207674_10603741 3300026116 Bacteria 1060
151 Ga0207674_11459865 3300026116 Bacteria 653
152 Ga0207674_11506871 3300026116 Bacteria 642
153 Ga0207698_10219792 3300026142 Bacteria 1716
154 Ga0207698_10737206 3300026142 Bacteria 983
155 Ga0207698_10905858 3300026142 Bacteria 889
156 Ga0207698_11188534 3300026142 Bacteria 776
157 Ga0207698_11524308 3300026142 Bacteria 684
158 Ga0268264_10006688 3300028381 Bacteria 9690
159 Ga0268264_10130629 3300028381 Bacteria 2226
160 Ga0307513_10877495 3300031456 Unclassified 604
161 Ga0307509_10026174 3300031507 Bacteria 6507
162 Ga0307516_10398468 3300031730 Bacteria 1036
163 Ga0307414_10928140 3300032004 Bacteria 799
164 Ga0316574_0044391 3300035398 Bacteria 2750
165 Ga0316574_0369811 3300035398 Unclassified 905
166 Ga0451802_1683368 3300041460 Unclassified 659
167 Ga0451807_2345146 3300041486 Unclassified 672
168 Ga0451839_0607718 3300041496 Unclassified 622
169 Ga0453683_0546376 3300044673 Bacteria 753
170 Ga0466961_0240515 3300044693 Unclassified 1113
171 Ga0453684_0066454 3300044712 Bacteria 4591
172 Ga0466959_0104754 3300045049 Bacteria 2023
173 Ga0451576_1409422 3300045051 Bacteria 725
174 Ga0466967_1262427 3300045976 Bacteria 736
175 Ga0495638_0199986 3300046460 Unclassified 1129
176 Ga0495687_001980 3300047443 Bacteria 17467
177 Ga0495687_128508 3300047443 Bacteria 901
178 Ga0501033_0176525 3300049570 Bacteria 1532
179 Ga0501033_0381576 3300049570 Bacteria 985
180 Ga0501034_0037010 3300049571 Bacteria 4941
181 Ga0501034_0070941 3300049571 Bacteria 3494
182 Ga0501036_0483335 3300049572 Bacteria 1031
183 Ga0501037_0097595 3300049573 Bacteria 2123
184 Ga0501038_0070516 3300049574 Bacteria 2967
185 Ga0501038_0581591 3300049574 Bacteria 849
186 Ga0501043_0045772 3300049579 Bacteria 3441
187 Ga0501043_0800706 3300049579 Unclassified 682
188 Ga0501043_0860698 3300049579 Bacteria 652
189 Ga0501047_0892758 3300049581 Bacteria 702
190 Ga0501070_0138092 3300049586 Bacteria 2013
191 Ga0501070_0836287 3300049586 Bacteria 721
192 Ga0501225_0000499 3300049705 Bacteria 12206
193 Ga0501080_0210708 3300049742 Unclassified 1781
194 Ga0501276_045931 3300049773 Bacteria 500
195 Ga0501044_0028957 3300049823 Bacteria 5842
196 Ga0501044_0032516 3300049823 Bacteria 5484
197 Ga0500644_0022603 3300053088 Bacteria 1899
198 Ga0500646_0067240 3300053090 Unclassified 1068
199 Ga0500583_0000036 3300053092 Bacteria 95404
200 Ga0500583_0000426 3300053092 Bacteria 13358
201 Ga0500651_0303247 3300053093 Bacteria 916
202 Ga0500642_0434507 3300053130 Unclassified 566
203 Ga0500577_0309153 3300053142 Bacteria 690
204 Ga0500589_002824 3300053147 Bacteria 5994
205 Ga0500616_0166617 3300053153 Bacteria 1005
206 Ga0500622_0006949 3300053156 Bacteria 6479
207 Ga0500622_0147454 3300053156 Unclassified 1116
208 Ga0500587_036062 3300053739 Bacteria 695
209 2738726661 2738541278 Bacteria 9755573
210 Ga0501217_340809
211 JGI24737J22298_10165928
212 JGI25158J39367_1021612
213 JGI25159J45721_1047212
214 rootH1_10037171
215 rootH1_10154004
216 rootH2_10096150
217 rootL2_10113920
218 rootL2_10187590
219 rootH1_10000888
220 rootH1_10028305
221 rootH1_10030805
222 rootH1_10092913
223 rootH1_10143107
224 rootH1_10283107
225 JGI25160J50197_1007932
226 Ga0065712_10146879
227 Ga0065712_10178422
228 Ga0070658_10034184
229 Ga0070658_10215680
230 Ga0070658_10305876
231 Ga0070683_100016564
232 Ga0070683_101076184
233 Ga0070670_100051160
234 Ga0070670_101730912
235 Ga0070661_100063291
236 Ga0070661_101638194
237 Ga0070668_101948508
238 Ga0070675_100057580
239 Ga0070671_100322416
240 Ga0070671_100881184
241 Ga0070671_100936416
242 Ga0070673_100294134
243 Ga0070673_100418881
244 Ga0070688_100476606
245 Ga0070663_100923765
246 Ga0070662_100164886
247 Ga0068867_100648311
248 Ga0070684_100054934
249 Ga0070684_100550060
250 Ga0070684_100982587
251 Ga0070684_101044612
252 Ga0068853_100196811
253 Ga0070672_100503380
254 Ga0068855_100612056
255 Ga0070664_100019224
256 Ga0070664_100708234
257 Ga0068857_100310748
258 Ga0068857_100504868
259 Ga0068857_102206958
260 Ga0068857_102422813
261 Ga0068856_100100901
262 Ga0070702_100536123
263 Ga0068852_100192081
264 Ga0068852_100266973
265 Ga0068852_100309930
266 Ga0068852_100672792
267 Ga0068852_101552264
268 Ga0068864_102465430
269 Ga0068851_10222766
270 Ga0068851_10333554
271 Ga0068863_100340536
272 Ga0068860_100042855
273 Ga0070716_101533809
274 Ga0097621_100976964
275 Ga0105240_10307602
276 Ga0105240_11464916
277 Ga0105241_11887276
278 Ga0105242_10449879
279 Ga0105237_10050413
280 Ga0105237_11197377
281 Ga0105249_10051286
282 Ga0105239_10490544
283 Ga0105239_13245281
284 Ga0157373_10296298
285 Ga0157371_10000401
286 Ga0157371_10001940
287 Ga0157371_10011240
288 Ga0157371_10152811
289 Ga0157371_10180032
290 Ga0157371_10311315
291 Ga0157370_10185733
292 Ga0157370_10555767
293 Ga0157370_11297857
294 Ga0157369_10056087
295 Ga0157369_10615991
296 Ga0157369_10661971
297 Ga0157369_10869989
298 Ga0157374_10001748
299 Ga0157374_10261518
300 Ga0157374_10478032
301 Ga0157378_10386697
302 Ga0157378_11170316
303 Ga0157378_11337852
304 Ga0163162_10000120
305 Ga0163162_10001935
306 Ga0163162_10306692
307 Ga0163162_10819353
308 Ga0157372_10017158
309 Ga0157372_10030413
310 Ga0157372_10060614
311 Ga0157372_10098629
312 Ga0157372_10146771
313 Ga0157372_10428295
314 Ga0157372_11700279
315 Ga0157372_12278405
316 Ga0157372_13455562
317 Ga0157375_10280453
318 Ga0163163_10003321
319 Ga0163163_10242746
320 Ga0157379_11782520
321 Ga0157376_11313290
322 Ga0209436_100584
323 Ga0209130_1003640
324 Ga0207426_1000148
325 Ga0207656_10220951
326 Ga0207656_10497210
327 Ga0207647_10085960
328 Ga0207705_10086735
329 Ga0207705_10090455
330 Ga0207695_10006035
331 Ga0207671_10036504
332 Ga0207657_10410697
333 Ga0207649_10065967
334 Ga0207650_10023791
335 Ga0207650_10250516
336 Ga0207650_11380398
337 Ga0207659_10409470
338 Ga0207690_10716959
339 Ga0207706_10000521
340 Ga0207691_10767403
341 Ga0207661_10964547
342 Ga0207661_11820742
343 Ga0207679_10637508
344 Ga0207667_10034761
345 Ga0207667_11025656
346 Ga0207651_10309450
347 Ga0207712_10042707
348 Ga0207639_10609603
349 Ga0207639_10720380
350 Ga0207678_10639639
351 Ga0207702_10041661
352 Ga0207641_10317277
353 Ga0207641_10581283
354 Ga0207676_11795800
355 Ga0207674_10371617
356 Ga0207674_10413040
357 Ga0207674_10603741
358 Ga0207674_11459865
359 Ga0207674_11506871
360 Ga0207698_10219792
361 Ga0207698_10737206
362 Ga0207698_10905858
363 Ga0207698_11188534
364 Ga0207698_11524308
365 Ga0268264_10006688
366 Ga0268264_10130629
367 Ga0307513_10877495
368 Ga0307509_10026174
369 Ga0307516_10398468
370 Ga0307414_10928140
371 Ga0316574_0044391
372 Ga0316574_0369811
373 Ga0451802_1683368
374 Ga0451807_2345146
375 Ga0451839_0607718
376 Ga0453683_0546376
377 Ga0466961_0240515
378 Ga0453684_0066454
379 Ga0466959_0104754
380 Ga0451576_1409422
381 Ga0466967_1262427
382 Ga0495638_0199986
383 Ga0495687_001980
384 Ga0495687_128508
385 Ga0501033_0176525
386 Ga0501033_0381576
387 Ga0501034_0037010
388 Ga0501034_0070941
389 Ga0501036_0483335
390 Ga0501037_0097595
391 Ga0501038_0070516
392 Ga0501038_0581591
393 Ga0501043_0045772
394 Ga0501043_0800706
395 Ga0501043_0860698
396 Ga0501047_0892758
397 Ga0501070_0138092
398 Ga0501070_0836287
399 Ga0501225_0000499
400 Ga0501080_0210708
401 Ga0501276_045931
402 Ga0501044_0028957
403 Ga0501044_0032516
404 Ga0500644_0022603
405 Ga0500646_0067240
406 Ga0500583_0000036
407 Ga0500583_0000426
408 Ga0500651_0303247
409 Ga0500642_0434507
410 Ga0500577_0309153
411 Ga0500589_002824
412 Ga0500616_0166617
413 Ga0500622_0006949
414 Ga0500622_0147454
415 Ga0500587_036062
416 2738726661

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13591

MerR_2

MerR HTH family regulatory protein

7

90

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
4r4e-assembly1.cif.gz_B structure of glnr-dna complex 0.8272 7 76
8csh-assembly1.cif.gz_A structure of the dna binding domain of psk1 par partition protein bound to centromere dna 0.8216 7 55
3ucs-assembly1.cif.gz_A crystal structure of the complex between cbpa j-domain and cbpm 0.8158 1 93
4r4e-assembly1.cif.gz_A structure of glnr-dna complex 0.8156 7 77
3ucs-assembly1.cif.gz_A crystal structure of the complex between cbpa j-domain and cbpm 0.7869 1 93
ID Description Score Start End Superfamily
3ucsB00 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.834 1 93 1.10.1660.10
4r4eA00 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.8156 7 77 1.10.1660.10
3ucsB00 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.8035 1 93 1.10.1660.10
af_I6YE30_32_77_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7914 7 49 1.10.10.10
af_O06302_4_79_1.10.1660.10 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.7805 4 71 1.10.1660.10
ID Description Score Start End GO Terms
AF-A0A1I2AYK1-F1-model_v4 MerR HTH family regulatory protein 0.988 3 92
AF-A0A7K1Y6G7-F1-model_v4 MerR family transcriptional regulator 0.9802 3 96
AF-A0A223P1C0-F1-model_v4 MerR family transcriptional regulator 0.98 3 92
AF-A0A1Q4F562-F1-model_v4 MerR family transcriptional regulator 0.9771 3 92
AF-A0A1M6JRT4-F1-model_v4 MerR HTH family regulatory protein 0.9759 1 92

Map