F316737
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 207 | 160 | 414 | 198 |
Family's Representative Sequence
| Representative Sequence | 3300037418|Ga0395900_0091704|Ga0395900_0091704_1725_2495 |
| Length | 235 |
| Sequence | VIDWAGSSYDAARPADHRVREARRFSFSAGSRHPIDENQEFPMSSEKITAEVRTEFGKGAARRIRRENKVPAVVYGHGNEPVHLTLPGHETMMAIKHGGANALLELVIDGTAQLALTKQVQVDPVRRVLEHVDFVAVKRGEKVTVDVPVHVVGDAAAETLVVTDAPAIQVEAEATHIPEQFEVDVTGAEAGTQIHAGDIALPSGVSLLTEADVLVVNVTAAPTAEAAADEAADSE |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 2 | 3300001990 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 | Metagenome | Rhizosphere |
| 3 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 4 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 5 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 6 | 3300005343 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG | Metagenome | Rhizosphere |
| 7 | 3300005345 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG | Metagenome | Rhizosphere |
| 8 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 10 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 11 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 12 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 15 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 16 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 17 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 18 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 19 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 20 | 3300006042 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 | Metagenome | Endosphere |
| 21 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 22 | 3300006177 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 | Metagenome | Endosphere |
| 23 | 3300006178 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 | Metagenome | Endosphere |
| 24 | 3300006353 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 | Metagenome | Endosphere |
| 25 | 3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Metagenome | Rhizosphere |
| 26 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 27 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 28 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 29 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 30 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 31 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 32 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 33 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 34 | 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Metagenome | Rhizosphere |
| 35 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 36 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 37 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 38 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 39 | 3300020081 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 40 | 3300020082 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 41 | 3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300025918 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 47 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 48 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 49 | 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 50 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 51 | 3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 52 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 53 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300027866 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) | Metagenome | Endosphere |
| 62 | 3300027907 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) | Metagenome | Rhizosphere |
| 63 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 66 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 67 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 68 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 69 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 70 | 3300035691 | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 | Metagenome | Rhizosphere |
| 71 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 72 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 73 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 74 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 75 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 76 | 3300041404 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 | Metagenome | Rhizosphere |
| 77 | 3300041407 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 | Metagenome | Rhizosphere |
| 78 | 3300042002 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 | Metagenome | Rhizosphere |
| 79 | 3300042146 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 | Metagenome | Rhizosphere |
| 80 | 3300042156 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 | Metagenome | Rhizosphere |
| 81 | 3300042435 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 | Metagenome | Rhizosphere |
| 82 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 83 | 3300044683 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R | Metagenome | Rhizosphere |
| 84 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 85 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 86 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 87 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 88 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 89 | 3300044901 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R | Metagenome | Rhizosphere |
| 90 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 91 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 92 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 93 | 3300046455 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere | Metagenome | Rhizosphere |
| 94 | 3300046459 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere | Metagenome | Rhizosphere |
| 95 | 3300046461 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere | Metagenome | Rhizosphere |
| 96 | 3300046473 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere | Metagenome | Rhizosphere |
| 97 | 3300046615 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere | Metagenome | Rhizosphere |
| 98 | 3300046675 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere | Metagenome | Rhizosphere |
| 99 | 3300047315 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere | Metagenome | Rhizosphere |
| 100 | 3300047673 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere | Metagenome | Rhizosphere |
| 101 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 102 | 3300048906 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 | Metagenome | Rhizoplane |
| 103 | 3300048909 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 | Metagenome | Rhizoplane |
| 104 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 105 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 106 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 107 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 108 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 109 | 3300049533 | Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 110 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 111 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 112 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 113 | 3300049576 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 114 | 3300049577 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 115 | 3300049578 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 116 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 117 | 3300049580 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 118 | 3300049582 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 119 | 3300049585 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 | Metagenome | Rhizosphere |
| 120 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 121 | 3300049587 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 | Metagenome | Rhizosphere |
| 122 | 3300049588 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 | Metagenome | Rhizosphere |
| 123 | 3300049590 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 | Metagenome | Rhizosphere |
| 124 | 3300049591 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 | Metagenome | Rhizosphere |
| 125 | 3300049592 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 | Metagenome | Rhizosphere |
| 126 | 3300049593 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 | Metagenome | Rhizosphere |
| 127 | 3300049741 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 | Metagenome | Rhizosphere |
| 128 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 129 | 3300049743 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 | Metagenome | Rhizosphere |
| 130 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 131 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 132 | 3300049824 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 133 | 3300050490 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation | Metagenome | Endosphere |
| 134 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 135 | 3300050492 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation | Metagenome | Endosphere |
| 136 | 3300050494 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation | Metagenome | Endosphere |
| 137 | 3300050495 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation | Metagenome | Endosphere |
| 138 | 3300050496 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation | Metagenome | Endosphere |
| 139 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 140 | 3300053077 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere | Metagenome | Rhizosphere |
| 141 | 3300053078 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere | Metagenome | Rhizosphere |
| 142 | 3300053084 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere | Metagenome | Rhizosphere |
| 143 | 3300054114 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 | Metagenome | Rhizosphere |
| 144 | 3300059508 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 53R_CD_T2_R1 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 145 | 3300059605 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 71R_SD_T2_R3 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 146 | 3300059630 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 165R_SD_T3_R1 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 147 | 3300059640 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 8R_CD_T1_R4 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 148 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 149 | 3300061719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 | Metagenome | Rhizosphere |
| 150 | 3300061734 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) | Metagenome | Rhizosphere |
| 151 | 2643221561 | Nocardioides sp. Root151 | Isolate | Unclassified |
| 152 | 2643221576 | Nocardioides sp. Root614 | Isolate | Unclassified |
| 153 | 2643221590 | Nocardioides sp. Root682 | Isolate | Unclassified |
| 154 | 2643221604 | Nocardioides sp. Root190 | Isolate | Unclassified |
| 155 | 2643221620 | Nocardioides sp. Root240 | Isolate | Unclassified |
| 156 | 2643221696 | Nocardioides sp. Root140 | Isolate | Unclassified |
| 157 | 2811994874 | Nocardioides sp. SLBN-35 | Isolate | Unclassified |
| 158 | 2855386786 | Nocardioides ferulae EGI 63112 | Isolate | Unclassified |
| 159 | 2984576629 | Nocardioides zeae SORGH_AS913 | Isolate | Aerial Root |
| 160 | 2990256926 | Nocardioides zeae SORGH_AS885 | Isolate | Aerial Root |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 91.3 |
| Metatranscriptomes | 3.86 |
| Isolates | 4.83 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0.97 |
| Bulb | 0 |
| Endosphere | 6.28 |
| Nodule | 0 |
| Rhizoplane | 6.28 |
| Rhizosphere | 82.13 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0395900_0091704 | 3300037418 | Bacteria | 3122 |
| 2 | JGI24737J22298_10050612 | 3300001990 | Bacteria | 1262 |
| 3 | Ga0070658_10006983 | 3300005327 | Bacteria | 9121 |
| 4 | Ga0070658_10008777 | 3300005327 | Bacteria | 8121 |
| 5 | Ga0070683_100002341 | 3300005329 | Bacteria | 15036 |
| 6 | Ga0070683_100004946 | 3300005329 | Bacteria | 11055 |
| 7 | Ga0070660_100014130 | 3300005339 | Bacteria | 5748 |
| 8 | Ga0070660_100027486 | 3300005339 | Bacteria | 4246 |
| 9 | Ga0070687_100050065 | 3300005343 | Bacteria | 2156 |
| 10 | Ga0070692_10120704 | 3300005345 | Bacteria | 1461 |
| 11 | Ga0070659_100032897 | 3300005366 | Bacteria | 4026 |
| 12 | Ga0070681_10326852 | 3300005458 | Bacteria | 1443 |
| 13 | Ga0070679_100082416 | 3300005530 | Bacteria | 3206 |
| 14 | Ga0070679_100347267 | 3300005530 | Bacteria | 1432 |
| 15 | Ga0070684_100004150 | 3300005535 | Bacteria | 10972 |
| 16 | Ga0070684_100342125 | 3300005535 | Bacteria | 1375 |
| 17 | Ga0070665_100000606 | 3300005548 | Bacteria | 49390 |
| 18 | Ga0070665_100071494 | 3300005548 | Bacteria | 3476 |
| 19 | Ga0070664_100088574 | 3300005564 | Bacteria | 2676 |
| 20 | Ga0068852_100393150 | 3300005616 | Bacteria | 1362 |
| 21 | Ga0068864_100020083 | 3300005618 | Bacteria | 5587 |
| 22 | Ga0068863_100206171 | 3300005841 | Bacteria | 1892 |
| 23 | Ga0068858_100055974 | 3300005842 | Bacteria | 3646 |
| 24 | Ga0068860_100120149 | 3300005843 | Bacteria | 2516 |
| 25 | Ga0075365_10031010 | 3300006038 | Bacteria | 3428 |
| 26 | Ga0075368_10000755 | 3300006042 | Bacteria | 9915 |
| 27 | Ga0075364_10003491 | 3300006051 | Bacteria | 8949 |
| 28 | Ga0075362_10153950 | 3300006177 | Bacteria | 1104 |
| 29 | Ga0075367_10002239 | 3300006178 | Bacteria | 8741 |
| 30 | Ga0075370_10005014 | 3300006353 | Bacteria | 6515 |
| 31 | Ga0068865_100111399 | 3300006881 | Bacteria | 2020 |
| 32 | Ga0105240_10049670 | 3300009093 | Bacteria | 5293 |
| 33 | Ga0105240_10255252 | 3300009093 | Bacteria | 2025 |
| 34 | Ga0111539_10102121 | 3300009094 | Bacteria | 3366 |
| 35 | Ga0105245_10001197 | 3300009098 | Bacteria | 23470 |
| 36 | Ga0105245_10032008 | 3300009098 | Bacteria | 4656 |
| 37 | Ga0105243_10411214 | 3300009148 | Bacteria | 1259 |
| 38 | Ga0105248_10132406 | 3300009177 | Bacteria | 2813 |
| 39 | Ga0105238_10169945 | 3300009551 | Bacteria | 2156 |
| 40 | Ga0105238_10612349 | 3300009551 | Bacteria | 1097 |
| 41 | Ga0105249_10527055 | 3300009553 | Bacteria | 1229 |
| 42 | Ga0105239_10001341 | 3300010375 | Bacteria | 33185 |
| 43 | Ga0105246_10001074 | 3300011119 | Bacteria | 15790 |
| 44 | Ga0157374_10313637 | 3300013296 | Bacteria | 1553 |
| 45 | Ga0163162_10468991 | 3300013306 | Bacteria | 1391 |
| 46 | Ga0157372_10000081 | 3300013307 | Bacteria | 99429 |
| 47 | Ga0157372_10002413 | 3300013307 | Bacteria | 20232 |
| 48 | Ga0157375_10054251 | 3300013308 | Bacteria | 3947 |
| 49 | Ga0206354_11357837 | 3300020081 | Bacteria | 824 |
| 50 | Ga0206354_11377974 | 3300020081 | Bacteria | 785 |
| 51 | Ga0206353_10085949 | 3300020082 | Bacteria | 739 |
| 52 | Ga0207688_10070644 | 3300025901 | Bacteria | 1980 |
| 53 | Ga0207647_10035094 | 3300025904 | Bacteria | 3198 |
| 54 | Ga0207705_10052440 | 3300025909 | Bacteria | 2936 |
| 55 | Ga0207705_10152584 | 3300025909 | Bacteria | 1731 |
| 56 | Ga0207707_10411754 | 3300025912 | Bacteria | 1160 |
| 57 | Ga0207660_10112433 | 3300025917 | Bacteria | 2051 |
| 58 | Ga0207662_10068191 | 3300025918 | Bacteria | 2148 |
| 59 | Ga0207657_10070936 | 3300025919 | Bacteria | 2951 |
| 60 | Ga0207657_10096751 | 3300025919 | Bacteria | 2455 |
| 61 | Ga0207652_10005990 | 3300025921 | Bacteria | 9836 |
| 62 | Ga0207687_10000975 | 3300025927 | Bacteria | 19466 |
| 63 | Ga0207687_10401629 | 3300025927 | Bacteria | 1127 |
| 64 | Ga0207690_10020386 | 3300025932 | Bacteria | 4097 |
| 65 | Ga0207690_10271489 | 3300025932 | Bacteria | 1318 |
| 66 | Ga0207704_10064582 | 3300025938 | Bacteria | 2287 |
| 67 | Ga0207711_10336770 | 3300025941 | Bacteria | 1396 |
| 68 | Ga0207661_10033929 | 3300025944 | Bacteria | 3964 |
| 69 | Ga0207661_10161869 | 3300025944 | Bacteria | 1942 |
| 70 | Ga0207679_10039966 | 3300025945 | Bacteria | 3354 |
| 71 | Ga0207712_10259685 | 3300025961 | Bacteria | 1408 |
| 72 | Ga0207703_10792629 | 3300026035 | Bacteria | 904 |
| 73 | Ga0207678_10341654 | 3300026067 | Bacteria | 1290 |
| 74 | Ga0207641_10399074 | 3300026088 | Bacteria | 1320 |
| 75 | Ga0207676_10054202 | 3300026095 | Bacteria | 3142 |
| 76 | Ga0207674_10161265 | 3300026116 | Bacteria | 2196 |
| 77 | Ga0209813_10014234 | 3300027866 | Bacteria | 2139 |
| 78 | Ga0207428_10109702 | 3300027907 | Bacteria | 2125 |
| 79 | Ga0268266_10000339 | 3300028379 | Bacteria | 73355 |
| 80 | Ga0268266_10313630 | 3300028379 | Bacteria | 1466 |
| 81 | Ga0268264_10099057 | 3300028381 | Bacteria | 2529 |
| 82 | Ga0307410_10177063 | 3300031852 | Bacteria | 1612 |
| 83 | Ga0307406_10356959 | 3300031901 | Bacteria | 1144 |
| 84 | Ga0307409_100967540 | 3300031995 | Bacteria | 868 |
| 85 | Ga0307416_100098324 | 3300032002 | Bacteria | 2538 |
| 86 | Ga0307415_100290547 | 3300032126 | Bacteria | 1349 |
| 87 | Ga0373931_0535149 | 3300035691 | Bacteria | 760 |
| 88 | Ga0395899_0001011 | 3300037312 | Bacteria | 25761 |
| 89 | Ga0395900_0010172 | 3300037418 | Bacteria | 9622 |
| 90 | Ga0395900_0369994 | 3300037418 | Bacteria | 1403 |
| 91 | Ga0395898_0060961 | 3300037466 | Bacteria | 3665 |
| 92 | Ga0395905_0131509 | 3300037471 | Bacteria | 2354 |
| 93 | Ga0395901_0038946 | 3300038443 | Bacteria | 4917 |
| 94 | Ga0436365_0426219 | 3300039437 | Bacteria | 2525 |
| 95 | Ga0439436_0067182 | 3300041404 | Bacteria | 1001 |
| 96 | Ga0439447_020175 | 3300041407 | Bacteria | 1771 |
| 97 | Ga0439442_067981 | 3300042002 | Bacteria | 757 |
| 98 | Ga0450907_037413 | 3300042146 | Bacteria | 830 |
| 99 | Ga0439446_0027976 | 3300042156 | Bacteria | 1621 |
| 100 | Ga0439434_0006964 | 3300042435 | Bacteria | 3303 |
| 101 | Ga0466972_0270182 | 3300044658 | Bacteria | 795 |
| 102 | Ga0466965_0069760 | 3300044683 | Bacteria | 1766 |
| 103 | Ga0466966_0154623 | 3300044684 | Bacteria | 1398 |
| 104 | Ga0466966_0192120 | 3300044684 | Bacteria | 1237 |
| 105 | Ga0466961_0026287 | 3300044693 | Bacteria | 3742 |
| 106 | Ga0466963_0024570 | 3300044694 | Bacteria | 3835 |
| 107 | Ga0466963_0160892 | 3300044694 | Bacteria | 1562 |
| 108 | Ga0466970_0011782 | 3300044765 | Bacteria | 4459 |
| 109 | Ga0466970_0066190 | 3300044765 | Bacteria | 1939 |
| 110 | Ga0466957_0069977 | 3300044842 | Bacteria | 2168 |
| 111 | Ga0466957_0086798 | 3300044842 | Bacteria | 1955 |
| 112 | Ga0466957_0434540 | 3300044842 | Bacteria | 902 |
| 113 | Ga0466960_0006089 | 3300044901 | Bacteria | 4823 |
| 114 | Ga0466960_0337174 | 3300044901 | Bacteria | 857 |
| 115 | Ga0451576_0186163 | 3300045051 | Bacteria | 2168 |
| 116 | Ga0466958_0030192 | 3300045836 | Bacteria | 3217 |
| 117 | Ga0466958_0511654 | 3300045836 | Bacteria | 779 |
| 118 | Ga0466967_0004034 | 3300045976 | Bacteria | 9796 |
| 119 | Ga0466967_0064983 | 3300045976 | Bacteria | 3246 |
| 120 | Ga0466967_0083802 | 3300045976 | Bacteria | 2884 |
| 121 | Ga0466967_0222452 | 3300045976 | Bacteria | 1794 |
| 122 | Ga0466967_0850729 | 3300045976 | Bacteria | 906 |
| 123 | Ga0495603_0156042 | 3300046455 | Bacteria | 1325 |
| 124 | Ga0495629_0103602 | 3300046459 | Bacteria | 1985 |
| 125 | Ga0495641_0081505 | 3300046461 | Bacteria | 1449 |
| 126 | Ga0495582_0196835 | 3300046473 | Bacteria | 1150 |
| 127 | Ga0495656_0218265 | 3300046615 | Bacteria | 953 |
| 128 | Ga0495657_0308389 | 3300046675 | Bacteria | 943 |
| 129 | Ga0495581_0134913 | 3300047315 | Bacteria | 1439 |
| 130 | Ga0495593_0050793 | 3300047673 | Bacteria | 2196 |
| 131 | Ga0496102_0008685 | 3300048905 | Bacteria | 8721 |
| 132 | Ga0496102_0936701 | 3300048905 | Bacteria | 787 |
| 133 | Ga0496103_0091386 | 3300048906 | Bacteria | 1921 |
| 134 | Ga0496106_0788440 | 3300048909 | Bacteria | 754 |
| 135 | Ga0496108_0004950 | 3300048911 | Bacteria | 10766 |
| 136 | Ga0496108_0146211 | 3300048911 | Bacteria | 2038 |
| 137 | Ga0496109_0035217 | 3300048912 | Bacteria | 4514 |
| 138 | Ga0496109_0072140 | 3300048912 | Bacteria | 3171 |
| 139 | Ga0496109_0145521 | 3300048912 | Bacteria | 2217 |
| 140 | Ga0496110_0004658 | 3300048913 | Bacteria | 10665 |
| 141 | Ga0496110_0311885 | 3300048913 | Bacteria | 1433 |
| 142 | Ga0496111_0000445 | 3300048914 | Bacteria | 21022 |
| 143 | Ga0496114_0115706 | 3300048917 | Bacteria | 2301 |
| 144 | Ga0501317_026936 | 3300049533 | Bacteria | 814 |
| 145 | Ga0501036_0142234 | 3300049572 | Bacteria | 2024 |
| 146 | Ga0501036_0397938 | 3300049572 | Bacteria | 1149 |
| 147 | Ga0501038_0190064 | 3300049574 | Bacteria | 1653 |
| 148 | Ga0501039_0132272 | 3300049575 | Bacteria | 1958 |
| 149 | Ga0501039_0188907 | 3300049575 | Bacteria | 1620 |
| 150 | Ga0501040_0019179 | 3300049576 | Bacteria | 4548 |
| 151 | Ga0501041_0052204 | 3300049577 | Bacteria | 2492 |
| 152 | Ga0501042_0030010 | 3300049578 | Bacteria | 3838 |
| 153 | Ga0501042_0339427 | 3300049578 | Bacteria | 1086 |
| 154 | Ga0501043_0208753 | 3300049579 | Bacteria | 1514 |
| 155 | Ga0501043_0427452 | 3300049579 | Bacteria | 998 |
| 156 | Ga0501046_0260182 | 3300049580 | Bacteria | 1275 |
| 157 | Ga0501048_0040741 | 3300049582 | Bacteria | 3327 |
| 158 | Ga0501069_0031401 | 3300049585 | Bacteria | 2921 |
| 159 | Ga0501069_0065288 | 3300049585 | Bacteria | 2035 |
| 160 | Ga0501070_0001826 | 3300049586 | Bacteria | 18754 |
| 161 | Ga0501071_0035553 | 3300049587 | Bacteria | 3548 |
| 162 | Ga0501071_0129601 | 3300049587 | Bacteria | 1873 |
| 163 | Ga0501072_0236145 | 3300049588 | Bacteria | 1456 |
| 164 | Ga0501074_0022648 | 3300049590 | Bacteria | 4567 |
| 165 | Ga0501074_0073731 | 3300049590 | Bacteria | 2452 |
| 166 | Ga0501074_0192498 | 3300049590 | Bacteria | 1454 |
| 167 | Ga0501075_0430841 | 3300049591 | Bacteria | 1006 |
| 168 | Ga0501075_0731008 | 3300049591 | Bacteria | 754 |
| 169 | Ga0501076_0366035 | 3300049592 | Bacteria | 1184 |
| 170 | Ga0501077_0386034 | 3300049593 | Bacteria | 895 |
| 171 | Ga0501079_0017985 | 3300049741 | Bacteria | 5397 |
| 172 | Ga0501080_0032493 | 3300049742 | Bacteria | 4868 |
| 173 | Ga0501081_0086603 | 3300049743 | Bacteria | 2199 |
| 174 | Ga0501035_0034659 | 3300049822 | Bacteria | 4585 |
| 175 | Ga0501044_0467276 | 3300049823 | Bacteria | 1166 |
| 176 | Ga0501045_0059887 | 3300049824 | Bacteria | 2790 |
| 177 | Ga0501045_0209712 | 3300049824 | Bacteria | 1451 |
| 178 | nmdc:mga03n38_16246_c1 | 3300050490 | Bacteria | 2893 |
| 179 | nmdc:mga00v17_84427_c1 | 3300050491 | Bacteria | 1988 |
| 180 | nmdc:mga0yw44_39544_c1 | 3300050492 | Bacteria | 2798 |
| 181 | nmdc:mga06z11_47176_c1 | 3300050494 | Bacteria | 2187 |
| 182 | nmdc:mga04h51_10266_c1 | 3300050495 | Bacteria | 2568 |
| 183 | nmdc:mga07m45_2442_c1 | 3300050496 | Bacteria | 8724 |
| 184 | nmdc:mga08y16_464215_c1 | 3300050511 | Bacteria | 1290 |
| 185 | nmdc:mga08y16_513941_c1 | 3300050511 | Bacteria | 1215 |
| 186 | Ga0495601_0019224 | 3300053077 | Bacteria | 4165 |
| 187 | Ga0495612_0016751 | 3300053078 | Bacteria | 2935 |
| 188 | Ga0495595_0131263 | 3300053084 | Bacteria | 1225 |
| 189 | Ga0501084_0051617 | 3300054114 | Bacteria | 3442 |
| 190 | Ga0501084_0080494 | 3300054114 | Bacteria | 2731 |
| 191 | Ga0587088_041820 | 3300059508 | Bacteria | 866 |
| 192 | Ga0587106_035211 | 3300059605 | Bacteria | 824 |
| 193 | Ga0587128_012579 | 3300059630 | Bacteria | 1178 |
| 194 | Ga0587067_038763 | 3300059640 | Bacteria | 916 |
| 195 | Ga0501082_0046491 | 3300060353 | Bacteria | 3741 |
| 196 | Ga0466962_0025898 | 3300061719 | Bacteria | 2815 |
| 197 | Ga0530510_0017085 | 3300061734 | Bacteria | 5138 |
| 198 | 2643827717 | 2643221561 | Bacteria | 4984412 |
| 199 | 2643890283 | 2643221576 | Bacteria | 5214352 |
| 200 | 2643959339 | 2643221590 | Bacteria | 5214697 |
| 201 | 2644033209 | 2643221604 | Bacteria | 5014917 |
| 202 | 2644118999 | 2643221620 | Bacteria | 5134593 |
| 203 | 2644534970 | 2643221696 | Bacteria | 5431823 |
| 204 | 2812334532 | 2811994874 | Bacteria | 5367947 |
| 205 | 2855389509 | 2855386786 | Bacteria | 4752232 |
| 206 | 2984579666 | 2984576629 | Bacteria | 4248407 |
| 207 | 2990257273 | 2990256926 | Bacteria | 4252839 |
| 208 | Ga0395900_0091704 | |||
| 209 | JGI24737J22298_10050612 | |||
| 210 | Ga0070658_10006983 | |||
| 211 | Ga0070658_10008777 | |||
| 212 | Ga0070683_100002341 | |||
| 213 | Ga0070683_100004946 | |||
| 214 | Ga0070660_100014130 | |||
| 215 | Ga0070660_100027486 | |||
| 216 | Ga0070687_100050065 | |||
| 217 | Ga0070692_10120704 | |||
| 218 | Ga0070659_100032897 | |||
| 219 | Ga0070681_10326852 | |||
| 220 | Ga0070679_100082416 | |||
| 221 | Ga0070679_100347267 | |||
| 222 | Ga0070684_100004150 | |||
| 223 | Ga0070684_100342125 | |||
| 224 | Ga0070665_100000606 | |||
| 225 | Ga0070665_100071494 | |||
| 226 | Ga0070664_100088574 | |||
| 227 | Ga0068852_100393150 | |||
| 228 | Ga0068864_100020083 | |||
| 229 | Ga0068863_100206171 | |||
| 230 | Ga0068858_100055974 | |||
| 231 | Ga0068860_100120149 | |||
| 232 | Ga0075365_10031010 | |||
| 233 | Ga0075368_10000755 | |||
| 234 | Ga0075364_10003491 | |||
| 235 | Ga0075362_10153950 | |||
| 236 | Ga0075367_10002239 | |||
| 237 | Ga0075370_10005014 | |||
| 238 | Ga0068865_100111399 | |||
| 239 | Ga0105240_10049670 | |||
| 240 | Ga0105240_10255252 | |||
| 241 | Ga0111539_10102121 | |||
| 242 | Ga0105245_10001197 | |||
| 243 | Ga0105245_10032008 | |||
| 244 | Ga0105243_10411214 | |||
| 245 | Ga0105248_10132406 | |||
| 246 | Ga0105238_10169945 | |||
| 247 | Ga0105238_10612349 | |||
| 248 | Ga0105249_10527055 | |||
| 249 | Ga0105239_10001341 | |||
| 250 | Ga0105246_10001074 | |||
| 251 | Ga0157374_10313637 | |||
| 252 | Ga0163162_10468991 | |||
| 253 | Ga0157372_10000081 | |||
| 254 | Ga0157372_10002413 | |||
| 255 | Ga0157375_10054251 | |||
| 256 | Ga0206354_11357837 | |||
| 257 | Ga0206354_11377974 | |||
| 258 | Ga0206353_10085949 | |||
| 259 | Ga0207688_10070644 | |||
| 260 | Ga0207647_10035094 | |||
| 261 | Ga0207705_10052440 | |||
| 262 | Ga0207705_10152584 | |||
| 263 | Ga0207707_10411754 | |||
| 264 | Ga0207660_10112433 | |||
| 265 | Ga0207662_10068191 | |||
| 266 | Ga0207657_10070936 | |||
| 267 | Ga0207657_10096751 | |||
| 268 | Ga0207652_10005990 | |||
| 269 | Ga0207687_10000975 | |||
| 270 | Ga0207687_10401629 | |||
| 271 | Ga0207690_10020386 | |||
| 272 | Ga0207690_10271489 | |||
| 273 | Ga0207704_10064582 | |||
| 274 | Ga0207711_10336770 | |||
| 275 | Ga0207661_10033929 | |||
| 276 | Ga0207661_10161869 | |||
| 277 | Ga0207679_10039966 | |||
| 278 | Ga0207712_10259685 | |||
| 279 | Ga0207703_10792629 | |||
| 280 | Ga0207678_10341654 | |||
| 281 | Ga0207641_10399074 | |||
| 282 | Ga0207676_10054202 | |||
| 283 | Ga0207674_10161265 | |||
| 284 | Ga0209813_10014234 | |||
| 285 | Ga0207428_10109702 | |||
| 286 | Ga0268266_10000339 | |||
| 287 | Ga0268266_10313630 | |||
| 288 | Ga0268264_10099057 | |||
| 289 | Ga0307410_10177063 | |||
| 290 | Ga0307406_10356959 | |||
| 291 | Ga0307409_100967540 | |||
| 292 | Ga0307416_100098324 | |||
| 293 | Ga0307415_100290547 | |||
| 294 | Ga0373931_0535149 | |||
| 295 | Ga0395899_0001011 | |||
| 296 | Ga0395900_0010172 | |||
| 297 | Ga0395900_0369994 | |||
| 298 | Ga0395898_0060961 | |||
| 299 | Ga0395905_0131509 | |||
| 300 | Ga0395901_0038946 | |||
| 301 | Ga0436365_0426219 | |||
| 302 | Ga0439436_0067182 | |||
| 303 | Ga0439447_020175 | |||
| 304 | Ga0439442_067981 | |||
| 305 | Ga0450907_037413 | |||
| 306 | Ga0439446_0027976 | |||
| 307 | Ga0439434_0006964 | |||
| 308 | Ga0466972_0270182 | |||
| 309 | Ga0466965_0069760 | |||
| 310 | Ga0466966_0154623 | |||
| 311 | Ga0466966_0192120 | |||
| 312 | Ga0466961_0026287 | |||
| 313 | Ga0466963_0024570 | |||
| 314 | Ga0466963_0160892 | |||
| 315 | Ga0466970_0011782 | |||
| 316 | Ga0466970_0066190 | |||
| 317 | Ga0466957_0069977 | |||
| 318 | Ga0466957_0086798 | |||
| 319 | Ga0466957_0434540 | |||
| 320 | Ga0466960_0006089 | |||
| 321 | Ga0466960_0337174 | |||
| 322 | Ga0451576_0186163 | |||
| 323 | Ga0466958_0030192 | |||
| 324 | Ga0466958_0511654 | |||
| 325 | Ga0466967_0004034 | |||
| 326 | Ga0466967_0064983 | |||
| 327 | Ga0466967_0083802 | |||
| 328 | Ga0466967_0222452 | |||
| 329 | Ga0466967_0850729 | |||
| 330 | Ga0495603_0156042 | |||
| 331 | Ga0495629_0103602 | |||
| 332 | Ga0495641_0081505 | |||
| 333 | Ga0495582_0196835 | |||
| 334 | Ga0495656_0218265 | |||
| 335 | Ga0495657_0308389 | |||
| 336 | Ga0495581_0134913 | |||
| 337 | Ga0495593_0050793 | |||
| 338 | Ga0496102_0008685 | |||
| 339 | Ga0496102_0936701 | |||
| 340 | Ga0496103_0091386 | |||
| 341 | Ga0496106_0788440 | |||
| 342 | Ga0496108_0004950 | |||
| 343 | Ga0496108_0146211 | |||
| 344 | Ga0496109_0035217 | |||
| 345 | Ga0496109_0072140 | |||
| 346 | Ga0496109_0145521 | |||
| 347 | Ga0496110_0004658 | |||
| 348 | Ga0496110_0311885 | |||
| 349 | Ga0496111_0000445 | |||
| 350 | Ga0496114_0115706 | |||
| 351 | Ga0501317_026936 | |||
| 352 | Ga0501036_0142234 | |||
| 353 | Ga0501036_0397938 | |||
| 354 | Ga0501038_0190064 | |||
| 355 | Ga0501039_0132272 | |||
| 356 | Ga0501039_0188907 | |||
| 357 | Ga0501040_0019179 | |||
| 358 | Ga0501041_0052204 | |||
| 359 | Ga0501042_0030010 | |||
| 360 | Ga0501042_0339427 | |||
| 361 | Ga0501043_0208753 | |||
| 362 | Ga0501043_0427452 | |||
| 363 | Ga0501046_0260182 | |||
| 364 | Ga0501048_0040741 | |||
| 365 | Ga0501069_0031401 | |||
| 366 | Ga0501069_0065288 | |||
| 367 | Ga0501070_0001826 | |||
| 368 | Ga0501071_0035553 | |||
| 369 | Ga0501071_0129601 | |||
| 370 | Ga0501072_0236145 | |||
| 371 | Ga0501074_0022648 | |||
| 372 | Ga0501074_0073731 | |||
| 373 | Ga0501074_0192498 | |||
| 374 | Ga0501075_0430841 | |||
| 375 | Ga0501075_0731008 | |||
| 376 | Ga0501076_0366035 | |||
| 377 | Ga0501077_0386034 | |||
| 378 | Ga0501079_0017985 | |||
| 379 | Ga0501080_0032493 | |||
| 380 | Ga0501081_0086603 | |||
| 381 | Ga0501035_0034659 | |||
| 382 | Ga0501044_0467276 | |||
| 383 | Ga0501045_0059887 | |||
| 384 | Ga0501045_0209712 | |||
| 385 | nmdc:mga03n38_16246_c1 | |||
| 386 | nmdc:mga00v17_84427_c1 | |||
| 387 | nmdc:mga0yw44_39544_c1 | |||
| 388 | nmdc:mga06z11_47176_c1 | |||
| 389 | nmdc:mga04h51_10266_c1 | |||
| 390 | nmdc:mga07m45_2442_c1 | |||
| 391 | nmdc:mga08y16_464215_c1 | |||
| 392 | nmdc:mga08y16_513941_c1 | |||
| 393 | Ga0495601_0019224 | |||
| 394 | Ga0495612_0016751 | |||
| 395 | Ga0495595_0131263 | |||
| 396 | Ga0501084_0051617 | |||
| 397 | Ga0501084_0080494 | |||
| 398 | Ga0587088_041820 | |||
| 399 | Ga0587106_035211 | |||
| 400 | Ga0587128_012579 | |||
| 401 | Ga0587067_038763 | |||
| 402 | Ga0501082_0046491 | |||
| 403 | Ga0466962_0025898 | |||
| 404 | Ga0530510_0017085 | |||
| 405 | 2643827717 | |||
| 406 | 2643890283 | |||
| 407 | 2643959339 | |||
| 408 | 2644033209 | |||
| 409 | 2644118999 | |||
| 410 | 2644534970 | |||
| 411 | 2812334532 | |||
| 412 | 2855389509 | |||
| 413 | 2984579666 | |||
| 414 | 2990257273 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 8fr8-assembly1.cif.gz_2 | structure of mycobacterium smegmatis rsh bound to a 70s translation initiation complex | 0.9543 | 1 | 177 |
| 5zeb-assembly1.cif.gz_W | m. smegmatis p/p state 70s ribosome structure | 0.9524 | 1 | 186 |
| 5xym-assembly1.cif.gz_V | large subunit of mycobacterium smegmatis | 0.9456 | 1 | 177 |
| 8cvm-assembly1.cif.gz_u | cutibacterium acnes 50s ribosomal subunit with p-site trna and sarecycline bound in the local refined map | 0.9438 | 1 | 180 |
| 5xym-assembly1.cif.gz_V | large subunit of mycobacterium smegmatis | 0.9402 | 1 | 177 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_P9WHB5_101_189_2.170.120.20 | Mainly Beta;Beta Complex;RNA Polymerase Alpha Subunit; Chain A, domain 2;Ribosomal protein L25, C-terminal domain | 0.9749 | 97 | 184 | 2.170.120.20 |
| af_P9WHB5_101_189_2.170.120.20 | Mainly Beta;Beta Complex;RNA Polymerase Alpha Subunit; Chain A, domain 2;Ribosomal protein L25, C-terminal domain | 0.9537 | 97 | 184 | 2.170.120.20 |
| af_Q2G0S0_95_176_2.170.120.20 | Mainly Beta;Beta Complex;RNA Polymerase Alpha Subunit; Chain A, domain 2;Ribosomal protein L25, C-terminal domain | 0.953 | 95 | 172 | 2.170.120.20 |
| af_P9WHB5_5_98_2.40.240.10 | Mainly Beta;Beta Barrel;Ribosomal Protein L25; Chain P;Ribosomal Protein L25; Chain P | 0.9526 | 1 | 94 | 2.40.240.10 |
| af_P9WHB5_5_98_2.40.240.10 | Mainly Beta;Beta Barrel;Ribosomal Protein L25; Chain P;Ribosomal Protein L25; Chain P | 0.943 | 1 | 94 | 2.40.240.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A3G9J2Y6-F1-model_v4 | Large ribosomal subunit protein bL25 L25 domain-containing protein | 0.9868 | 1 | 97 |
GO:0003735
GO:0006412 GO:0008097 GO:0022625 |
| AF-W1VKG7-F1-model_v4 | 50S ribosomal protein L25 | 0.973 | 1 | 163 |
GO:0003735
GO:0006412 GO:0008097 GO:0022625 |
| AF-A0A7X6ER14-F1-model_v4 | deleted | 0.9718 | 87 | 161 |
|
| AF-A0A0X8E3Y1-F1-model_v4 | Large ribosomal subunit protein bL25 (General stress protein CTC) | 0.9654 | 2 | 182 |
GO:0003735
GO:0006412 GO:0008097 GO:0022625 |
| AF-A0A6V8L1Q0-F1-model_v4 | Large ribosomal subunit protein bL25 (General stress protein CTC) | 0.9647 | 1 | 186 |
GO:0003735
GO:0006412 GO:0008097 GO:0022625 |