F316358

General Info

Members Datasets Scaffolds Average Seq Length
207 157 198 516

Family's Representative Sequence

Representative Sequence 3300007265|Ga0099794_10005806|Ga0099794_100058062
Length 596
Sequence MTRFNGALFRVISWIDFRPMEKSDPRNHTKSIRMKTKTSLIILLVLTPLAISLTVTHGQKRGPAETDSIARSRVAGGYNVRSFGAKGDGKTVDTPAINAAIETTAAAGGGTVRFPAGTYLSFTIRLKSHIALYLDQGATILAADPSKIKGSYDLPEINQWDMYQDFGHSHWQNSLIAGIGLEDISILGPGLIDGRRLTRRSPRPRRPQQAGDAPVSLGDARPQAKVESPLGEDAPVSEMNSLGNKAIGLKNVRNVIIRDISILNGGHFAILATGVDNLTIDSVKIDTNRDGIDIDSCRNVRISNASVNSPNDDAIVLKSSYALGFARATENVTVTGCLVSGYDIESLLDGTFKRNVTEAPDHDGPAGRIKLGTESNGGFKNITISNIVFDHCRGLALETVDGGSLEDVSITNITMRDIVNSPIFLRLGGRMRGPAGMPVGELRRINISNIIAYNADPRYASIISGIPGHDIEDVRLSNVRIYYRGGGTSEQAALEPPERETNYPEPSMFGVIPAYGLFVRHVKGLAMNDVEVRYLNEDQRPAFVLNDVKGADFFQVRGQKRRNAPTFVLKNIEDFSVQQAFPVANVRLERVELRKF

Samples

Sample ID Description Type Environment
1 2599185354 Sphingomonas sp. NFR15 Isolate Rhizoplane
2 2643221556 Massilia sp. Root1485 Isolate Unclassified
3 2643221684 Massilia sp. Root133 Isolate Unclassified
4 2738543023 Pedobacter sp. OK628 Isolate Unclassified
5 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
6 2751185897 Sphingomonas panacis DCY99 Isolate Unclassified
7 2791354901 Actinophytocola xanthii 11-183 Isolate Rhizosphere
8 2795385472 Herbihabitans rhizosphaerae DSM 101727 Isolate Rhizosphere
9 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
10 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
11 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
12 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
13 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
14 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
17 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
18 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
19 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
20 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
21 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
22 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
23 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
24 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
25 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
26 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
27 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
30 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
31 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
32 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
33 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
34 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
35 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
36 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
37 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
38 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
39 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
45 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
46 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
47 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
48 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
49 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
50 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
51 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
52 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
55 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
56 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
57 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
58 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
59 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
78 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
79 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
80 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
81 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
82 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
83 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
84 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
85 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
86 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
87 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
88 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
89 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
90 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
91 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
92 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
93 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
94 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
95 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
96 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
97 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
98 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
99 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
100 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
101 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
102 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
103 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
104 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
105 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
106 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
107 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
108 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
109 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
110 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
111 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
112 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
113 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
114 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
115 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
116 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
117 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
118 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
119 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
120 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
121 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
122 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
123 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
124 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
125 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
126 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
127 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
128 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
129 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
130 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
131 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
132 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
133 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
134 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
135 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
138 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
140 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
141 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
144 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
146 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
147 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
148 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
149 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
150 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
151 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
152 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
153 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
154 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
155 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
156 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
157 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.14
Metatranscriptomes 0
Isolates 3.86

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.42
Nodule 0
Rhizoplane 1.45
Rhizosphere 90.34
Stem 0
Stem Tuber 0
Unclassified 5.8

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25157J39369_1005013 3300002741 Unclassified 2245
2 Ga0070658_10121854 3300005327 Bacteria 2167
3 Ga0070670_100124841 3300005331 Unclassified 2221
4 Ga0070668_100004194 3300005347 Bacteria 10684
5 Ga0070669_100055161 3300005353 Bacteria 2912
6 Ga0070675_100018821 3300005354 Bacteria 5498
7 Ga0070675_100028397 3300005354 Bacteria 4503
8 Ga0070675_100107249 3300005354 Bacteria 2358
9 Ga0070673_100149524 3300005364 Bacteria 1977
10 Ga0070667_100068313 3300005367 Bacteria 3024
11 Ga0070713_100006542 3300005436 Bacteria 8091
12 Ga0070713_100219341 3300005436 Bacteria 1725
13 Ga0070663_100000933 3300005455 Bacteria 15890
14 Ga0070663_100036680 3300005455 Unclassified 3407
15 Ga0070662_100082110 3300005457 Bacteria 2403
16 Ga0068867_100052698 3300005459 Bacteria 3003
17 Ga0070698_100001987 3300005471 Bacteria 22694
18 Ga0070699_100002830 3300005518 Bacteria 15479
19 Ga0070699_100100324 3300005518 Bacteria 2537
20 Ga0070697_100009487 3300005536 Bacteria 7606
21 Ga0068853_100144474 3300005539 Bacteria 2137
22 Ga0070696_100026688 3300005546 Bacteria 3930
23 Ga0070693_100070242 3300005547 Bacteria 2060
24 Ga0068856_100046857 3300005614 Bacteria 4258
25 Ga0068859_100170951 3300005617 Bacteria 2254
26 Ga0068864_100014572 3300005618 Bacteria 6532
27 Ga0068864_100022642 3300005618 Bacteria 5270
28 Ga0068864_100125882 3300005618 Bacteria 2296
29 Ga0068861_100056499 3300005719 Unclassified 2996
30 Ga0068870_10061955 3300005840 Bacteria 2013
31 Ga0068858_100068688 3300005842 Bacteria 3284
32 Ga0068860_100007844 3300005843 Bacteria 10655
33 Ga0075364_10029720 3300006051 Bacteria 3506
34 Ga0075367_10025255 3300006178 Bacteria 3358
35 Ga0075433_10038418 3300006852 Unclassified 4135
36 Ga0075434_100035160 3300006871 Unclassified 4952
37 Ga0068865_100075391 3300006881 Bacteria 2405
38 Ga0097620_100170936 3300006931 Bacteria 2254
39 Ga0099794_10005806 3300007265 Bacteria 4975
40 Ga0111539_10322904 3300009094 Bacteria 1796
41 Ga0105247_10026403 3300009101 Bacteria 3506
42 Ga0114129_10011408 3300009147 Bacteria 12658
43 Ga0105243_10000518 3300009148 Bacteria 39318
44 Ga0105242_10000287 3300009176 Bacteria 40380
45 Ga0105248_10001266 3300009177 Bacteria 28239
46 Ga0105249_10021054 3300009553 Bacteria 5836
47 Ga0157373_10043652 3300013100 Bacteria 3202
48 Ga0157373_10053534 3300013100 Bacteria 2869
49 Ga0157371_10001737 3300013102 Bacteria 22072
50 Ga0157369_10009544 3300013105 Bacteria 11099
51 Ga0157369_10009735 3300013105 Bacteria 10990
52 Ga0157374_10005213 3300013296 Bacteria 10898
53 Ga0157378_10038218 3300013297 Bacteria 4253
54 Ga0157378_10074938 3300013297 Bacteria 3046
55 Ga0163162_10008150 3300013306 Bacteria 10224
56 Ga0157372_10000016 3300013307 Bacteria 220177
57 Ga0163163_10001360 3300014325 Bacteria 20635
58 Ga0163163_10024315 3300014325 Bacteria 5764
59 Ga0163163_10093465 3300014325 Unclassified 3024
60 Ga0163163_10131588 3300014325 Bacteria 2542
61 Ga0163161_10092158 3300017792 Bacteria 2243
62 Ga0213876_10000078 3300021384 Bacteria 110940
63 Ga0213876_10000526 3300021384 Bacteria 29221
64 Ga0209026_1000361 3300025250 Bacteria 42722
65 Ga0207663_10038704 3300025916 Bacteria 2885
66 Ga0207681_10042920 3300025923 Bacteria 3024
67 Ga0207650_10035045 3300025925 Unclassified 3642
68 Ga0207650_10073299 3300025925 Unclassified 2579
69 Ga0207700_10009604 3300025928 Bacteria 6057
70 Ga0207700_10205748 3300025928 Bacteria 1661
71 Ga0207664_10001673 3300025929 Bacteria 14605
72 Ga0207686_10000026 3300025934 Bacteria 169189
73 Ga0207709_10000042 3300025935 Bacteria 254145
74 Ga0207669_10004329 3300025937 Bacteria 6238
75 Ga0207711_10023500 3300025941 Bacteria 5160
76 Ga0207667_10070669 3300025949 Bacteria 3633
77 Ga0207651_10071212 3300025960 Unclassified 2463
78 Ga0207668_10047457 3300025972 Bacteria 2940
79 Ga0207703_10018647 3300026035 Bacteria 5420
80 Ga0207639_10061725 3300026041 Bacteria 2896
81 Ga0207678_10000771 3300026067 Bacteria 29231
82 Ga0207641_10024252 3300026088 Bacteria 5001
83 Ga0207648_10073645 3300026089 Bacteria 2976
84 Ga0268266_10004909 3300028379 Bacteria 12675
85 Ga0268266_10007161 3300028379 Bacteria 10108
86 Ga0265319_1003458 3300028563 Bacteria 8221
87 Ga0265319_1004579 3300028563 Bacteria 6808
88 Ga0265338_10000456 3300028800 Bacteria 72990
89 Ga0265324_10004659 3300029957 Bacteria 6108
90 Ga0307512_10035569 3300030522 Bacteria 4241
91 Ga0265332_10040286 3300031238 Bacteria 2023
92 Ga0265320_10001231 3300031240 Bacteria 18800
93 Ga0265320_10036290 3300031240 Bacteria 2492
94 Ga0265316_10008437 3300031344 Bacteria 9564
95 Ga0265316_10058907 3300031344 Bacteria 2989
96 Ga0265313_10002375 3300031595 Bacteria 16354
97 Ga0265313_10004302 3300031595 Bacteria 11022
98 Ga0265313_10005786 3300031595 Bacteria 8983
99 Ga0265313_10011187 3300031595 Bacteria 5595
100 Ga0265313_10015039 3300031595 Bacteria 4538
101 Ga0307406_10017108 3300031901 Bacteria 4221
102 Ga0307507_10014993 3300033179 Bacteria 9168
103 Ga0395899_0000414 3300037312 Bacteria 49488
104 Ga0395899_0007190 3300037312 Bacteria 8616
105 Ga0395898_0068043 3300037466 Bacteria 3447
106 Ga0395901_0003258 3300038443 Bacteria 16332
107 Ga0436365_0012618 3300039437 Bacteria 53643
108 Ga0436365_1660809 3300039437 Bacteria 51972
109 Ga0466969_0051753 3300044656 Unclassified 2020
110 Ga0466966_0052975 3300044684 Bacteria 2575
111 Ga0466961_0023761 3300044693 Bacteria 3945
112 Ga0466961_0040579 3300044693 Bacteria 2984
113 Ga0453684_0097039 3300044712 Bacteria 3618
114 Ga0466957_0000013 3300044842 Bacteria 71310
115 Ga0466967_0040638 3300045976 Bacteria 4005
116 Ga0495603_0000422 3300046455 Bacteria 23371
117 Ga0495629_0017042 3300046459 Bacteria 5213
118 Ga0495653_0001107 3300046463 Bacteria 20791
119 Ga0495650_0000006 3300046471 Bacteria 721347
120 Ga0495650_0003532 3300046471 Bacteria 11322
121 Ga0495580_0025044 3300046472 Bacteria 4363
122 Ga0495582_0002354 3300046473 Bacteria 10576
123 Ga0495582_0032948 3300046473 Bacteria 2847
124 Ga0495662_0001100 3300046476 Bacteria 13301
125 Ga0495664_0005675 3300046477 Bacteria 6866
126 Ga0495585_0024789 3300046492 Bacteria 3438
127 Ga0495594_0000283 3300046499 Bacteria 24954
128 Ga0495594_0046707 3300046499 Bacteria 2378
129 Ga0495618_0018639 3300046514 Bacteria 4263
130 Ga0495644_0000037 3300046523 Bacteria 64819
131 Ga0495666_0000599 3300046526 Bacteria 16125
132 Ga0495652_0158672 3300046529 Bacteria 1759
133 Ga0495665_0020564 3300046531 Bacteria 3544
134 Ga0495587_0012696 3300046536 Bacteria 5297
135 Ga0495587_0052281 3300046536 Bacteria 2411
136 Ga0495645_0033570 3300046543 Bacteria 3744
137 Ga0495645_0059140 3300046543 Bacteria 2780
138 Ga0495645_0090055 3300046543 Bacteria 2193
139 Ga0495645_0090663 3300046543 Bacteria 2184
140 Ga0495667_0016310 3300046559 Bacteria 5020
141 Ga0495668_0023609 3300046616 Bacteria 3505
142 Ga0495611_0008256 3300046648 Bacteria 4416
143 Ga0495625_0000232 3300046660 Bacteria 87143
144 Ga0495625_0008846 3300046660 Bacteria 8522
145 Ga0495625_0032499 3300046660 Bacteria 3867
146 Ga0495635_0015329 3300046663 Bacteria 5361
147 Ga0495635_0032649 3300046663 Bacteria 3610
148 Ga0495659_0003378 3300046664 Bacteria 5115
149 Ga0495588_0000172 3300046674 Bacteria 81934
150 Ga0495657_0096114 3300046675 Bacteria 1893
151 Ga0495599_0005785 3300046678 Bacteria 7419
152 Ga0495623_0019761 3300046679 Unclassified 4355
153 Ga0495623_0084980 3300046679 Bacteria 1952
154 Ga0495613_0024890 3300046689 Bacteria 4460
155 Ga0495670_0000025 3300046691 Bacteria 91556
156 Ga0495670_0010398 3300046691 Bacteria 4571
157 Ga0495604_0045571 3300047317 Bacteria 3422
158 Ga0495674_0029765 3300047319 Bacteria 4968
159 Ga0495674_0056043 3300047319 Bacteria 3454
160 Ga0495672_0007443 3300047320 Bacteria 8236
161 Ga0495676_0004731 3300047321 Bacteria 12460
162 Ga0495680_0022387 3300047322 Bacteria 5267
163 Ga0495684_0006979 3300047471 Bacteria 8771
164 Ga0495684_0013080 3300047471 Bacteria 6405
165 Ga0495686_0003249 3300047472 Bacteria 14263
166 Ga0496102_0012093 3300048905 Bacteria 7458
167 Ga0496115_0018470 3300048918 Bacteria 5354
168 Ga0501031_0012413 3300049568 Bacteria 5557
169 Ga0501032_0003772 3300049569 Bacteria 11495
170 Ga0501033_0010330 3300049570 Bacteria 7166
171 Ga0501034_0002318 3300049571 Bacteria 23248
172 Ga0501034_0011841 3300049571 Bacteria 9028
173 Ga0501036_0000491 3300049572 Bacteria 28275
174 Ga0501037_0016417 3300049573 Bacteria 5449
175 Ga0501038_0004750 3300049574 Bacteria 12632
176 Ga0501043_0003941 3300049579 Bacteria 12175
177 Ga0501043_0021947 3300049579 Bacteria 5007
178 Ga0501046_0000312 3300049580 Bacteria 48878
179 Ga0501047_0000841 3300049581 Bacteria 31712
180 Ga0501047_0001298 3300049581 Bacteria 24628
181 Ga0501047_0101747 3300049581 Bacteria 2753
182 Ga0501074_0126322 3300049590 Bacteria 1829
183 Ga0501223_000073 3300049663 Bacteria 30339
184 Ga0501083_0048605 3300049744 Unclassified 2863
185 Ga0501035_0001039 3300049822 Bacteria 29046
186 Ga0501044_0007639 3300049823 Bacteria 11888
187 Ga0501044_0057956 3300049823 Bacteria 3973
188 nmdc:mga00v17_38009_c1 3300050491 Bacteria 2876
189 nmdc:mga06z11_21179_c1 3300050494 Bacteria 3017
190 nmdc:mga05p37_16482_c1 3300050507 Bacteria 8902
191 nmdc:mga05p37_414332_c1 3300050507 Bacteria 1570
192 nmdc:mga06r32_112347_c1 3300050510 Bacteria 2681
193 nmdc:mga0n895_32914_c1 3300050512 Unclassified 4978
194 nmdc:mga0a205_106241_c1 3300050515 Bacteria 2705
195 nmdc:mga0a205_136908_c1 3300050515 Bacteria 2349
196 nmdc:mga0a205_46798_c1 3300050515 Unclassified 4172
197 Ga0500661_000990 3300055283 Bacteria 5324
198 Ga0501082_0003118 3300060353 Bacteria 14451

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300050507 nmdc:mga05p37_414332_c1 nmdc:mga05p37_414332_c1_301_1554 382
2 3300006051 Ga0075364_10029720 Ga0075364_100297202 424
3 3300050491 nmdc:mga00v17_38009_c1 nmdc:mga00v17_38009_c1_871_2517 424
4 3300046664 Ga0495659_0003378 Ga0495659_0003378_2706_4328 441
5 3300028563 Ga0265319_1004579 Ga0265319_10045798 442
6 3300025916 Ga0207663_10038704 Ga0207663_100387043 443
7 3300046471 Ga0495650_0000006 Ga0495650_0000006_79942_81687 443
8 3300046691 Ga0495670_0000025 Ga0495670_0000025_13959_15602 444
9 3300049581 Ga0501047_0000841 Ga0501047_0000841_27982_29676 446
10 3300049822 Ga0501035_0001039 Ga0501035_0001039_15439_17133 446
11 3300049823 Ga0501044_0007639 Ga0501044_0007639_5435_7129 446
12 3300046660 Ga0495625_0032499 Ga0495625_0032499_820_2409 447
13 3300046455 Ga0495603_0000422 Ga0495603_0000422_7371_8996 449
14 3300046492 Ga0495585_0024789 Ga0495585_0024789_676_2301 449
15 3300046523 Ga0495644_0000037 Ga0495644_0000037_61788_63413 449
16 3300046648 Ga0495611_0008256 Ga0495611_0008256_1737_3362 449
17 3300046691 Ga0495670_0010398 Ga0495670_0010398_159_1784 449
18 3300028379 Ga0268266_10007161 Ga0268266_100071616 452
19 3300049579 Ga0501043_0021947 Ga0501043_0021947_2624_4213 452
20 3300013100 Ga0157373_10043652 Ga0157373_100436522 453
21 3300046514 Ga0495618_0018639 Ga0495618_0018639_264_1997 453
22 3300028379 Ga0268266_10004909 Ga0268266_100049097 454
23 3300009147 Ga0114129_10011408 Ga0114129_100114087 455
24 3300048905 Ga0496102_0012093 Ga0496102_0012093_2847_4382 455
25 3300049568 Ga0501031_0012413 Ga0501031_0012413_3349_5082 455
26 3300049569 Ga0501032_0003772 Ga0501032_0003772_8800_10533 455
27 3300049570 Ga0501033_0010330 Ga0501033_0010330_3350_5083 455
28 3300049571 Ga0501034_0011841 Ga0501034_0011841_1569_3302 455
29 3300049572 Ga0501036_0000491 Ga0501036_0000491_24696_26429 455
30 3300049573 Ga0501037_0016417 Ga0501037_0016417_2035_3768 455
31 3300049574 Ga0501038_0004750 Ga0501038_0004750_4655_6388 455
32 3300049579 Ga0501043_0003941 Ga0501043_0003941_1693_3426 455
33 3300049580 Ga0501046_0000312 Ga0501046_0000312_33441_35174 455
34 3300049581 Ga0501047_0001298 Ga0501047_0001298_19713_21446 455
35 3300049590 Ga0501074_0126322 Ga0501074_0126322_25_1758 455
36 3300050507 nmdc:mga05p37_16482_c1 nmdc:mga05p37_16482_c1_4682_6178 455
37 3300050512 nmdc:mga0n895_32914_c1 nmdc:mga0n895_32914_c1_598_2094 455
38 3300050515 nmdc:mga0a205_46798_c1 nmdc:mga0a205_46798_c1_1523_3019 455
39 3300046471 Ga0495650_0003532 Ga0495650_0003532_379_2109 456
40 3300046543 Ga0495645_0090055 Ga0495645_0090055_142_1716 457
41 3300037312 Ga0395899_0007190 Ga0395899_0007190_5540_7132 458
42 3300037466 Ga0395898_0068043 Ga0395898_0068043_1200_2792 458
43 3300038443 Ga0395901_0003258 Ga0395901_0003258_5578_7170 458
44 3300050510 nmdc:mga06r32_112347_c1 nmdc:mga06r32_112347_c1_1038_2576 458
45 3300046463 Ga0495653_0001107 Ga0495653_0001107_7104_8837 459
46 3300046536 Ga0495587_0052281 Ga0495587_0052281_369_2102 459
47 3300050515 nmdc:mga0a205_136908_c1 nmdc:mga0a205_136908_c1_432_1970 459
48 3300046660 Ga0495625_0000232 Ga0495625_0000232_54715_56448 460
49 3300047320 Ga0495672_0007443 Ga0495672_0007443_183_1913 460
50 3300046660 Ga0495625_0008846 Ga0495625_0008846_2656_4386 461
51 3300046459 Ga0495629_0017042 Ga0495629_0017042_2198_3931 462
52 3300046473 Ga0495582_0032948 Ga0495582_0032948_740_2473 462
53 3300046499 Ga0495594_0046707 Ga0495594_0046707_478_2211 462
54 3300028563 Ga0265319_1003458 Ga0265319_10034581 463
55 3300031238 Ga0265332_10040286 Ga0265332_100402861 463
56 3300031240 Ga0265320_10001231 Ga0265320_1000123111 463
57 3300031595 Ga0265313_10002375 Ga0265313_100023753 463
58 3300006852 Ga0075433_10038418 Ga0075433_100384183 464
59 3300006871 Ga0075434_100035160 Ga0075434_1000351602 464
60 3300046472 Ga0495580_0025044 Ga0495580_0025044_155_1885 464
61 3300046473 Ga0495582_0002354 Ga0495582_0002354_1571_3304 464
62 3300046477 Ga0495664_0005675 Ga0495664_0005675_3522_5255 464
63 3300046499 Ga0495594_0000283 Ga0495594_0000283_14783_16516 464
64 3300046526 Ga0495666_0000599 Ga0495666_0000599_6289_8022 464
65 3300046543 Ga0495645_0090663 Ga0495645_0090663_397_2130 464
66 3300046559 Ga0495667_0016310 Ga0495667_0016310_620_2353 464
67 3300046663 Ga0495635_0032649 Ga0495635_0032649_889_2622 464
68 3300046679 Ga0495623_0084980 Ga0495623_0084980_167_1900 464
69 3300046689 Ga0495613_0024890 Ga0495613_0024890_1824_3557 464
70 3300047319 Ga0495674_0056043 Ga0495674_0056043_55_1788 464
71 3300047321 Ga0495676_0004731 Ga0495676_0004731_920_2653 464
72 3300047471 Ga0495684_0006979 Ga0495684_0006979_1549_3282 464
73 3300055283 Ga0500661_000990 Ga0500661_000990_1073_2824 464
74 3300013296 Ga0157374_10005213 Ga0157374_100052135 465
75 3300014325 Ga0163163_10001360 Ga0163163_1000136018 465
76 3300030522 Ga0307512_10035569 Ga0307512_100355692 466
77 3300005327 Ga0070658_10121854 Ga0070658_101218542 467
78 3300005347 Ga0070668_100004194 Ga0070668_1000041947 467
79 3300005367 Ga0070667_100068313 Ga0070667_1000683132 467
80 3300009177 Ga0105248_10001266 Ga0105248_1000126611 467
81 3300025941 Ga0207711_10023500 Ga0207711_100235001 467
82 3300025972 Ga0207668_10047457 Ga0207668_100474573 467
83 3300046616 Ga0495668_0023609 Ga0495668_0023609_849_2582 467
84 3300013306 Ga0163162_10008150 Ga0163162_100081503 468
85 3300046476 Ga0495662_0001100 Ga0495662_0001100_10218_11951 468
86 3300046674 Ga0495588_0000172 Ga0495588_0000172_3512_5134 469
87 3300005457 Ga0070662_100082110 Ga0070662_1000821101 470
88 3300044693 Ga0466961_0023761 Ga0466961_0023761_2195_3820 470
89 3300044842 Ga0466957_0000013 Ga0466957_0000013_63502_65127 470
90 3300045976 Ga0466967_0040638 Ga0466967_0040638_1392_3026 470
91 3300005455 Ga0070663_100000933 Ga0070663_10000093316 471
92 3300025960 Ga0207651_10071212 Ga0207651_100712122 471
93 3300026067 Ga0207678_10000771 Ga0207678_1000077113 471
94 3300031595 Ga0265313_10011187 Ga0265313_100111874 473
95 3300031595 Ga0265313_10015039 Ga0265313_100150393 473
96 3300033179 Ga0307507_10014993 Ga0307507_100149933 473
97 3300046529 Ga0495652_0158672 Ga0495652_0158672_47_1615 474
98 3300046543 Ga0495645_0033570 Ga0495645_0033570_1352_2920 474
99 3300046664 Ga0495659_0003378 Ga0495659_0003378_865_2598 474
100 3300047471 Ga0495684_0013080 Ga0495684_0013080_3818_5386 474
101 3300060353 Ga0501082_0003118 Ga0501082_0003118_10751_12313 474
102 3300005354 Ga0070675_100107249 Ga0070675_1001072493 475
103 3300031595 Ga0265313_10005786 Ga0265313_100057867 475
104 iso_pu_bacteria 2643221556 2643801212 476
105 iso_pu_bacteria 2643221684 2644471796 476
106 3300047472 Ga0495686_0003249 Ga0495686_0003249_3241_4857 478
107 3300009094 Ga0111539_10322904 Ga0111539_103229041 479
108 3300005617 Ga0068859_100170951 Ga0068859_1001709512 480
109 3300006881 Ga0068865_100075391 Ga0068865_1000753912 480
110 3300006931 Ga0097620_100170936 Ga0097620_1001709362 480
111 3300013297 Ga0157378_10038218 Ga0157378_100382182 480
112 3300031240 Ga0265320_10036290 Ga0265320_100362902 480
113 3300031344 Ga0265316_10058907 Ga0265316_100589072 480
114 3300031595 Ga0265313_10004302 Ga0265313_100043026 480
115 3300021384 Ga0213876_10000078 Ga0213876_1000007859 481
116 3300021384 Ga0213876_10000526 Ga0213876_1000052610 481
117 3300025937 Ga0207669_10004329 Ga0207669_100043293 481
118 3300039437 Ga0436365_0012618 Ga0436365_0012618_15426_17096 481
119 3300039437 Ga0436365_1660809 Ga0436365_1660809_12144_13838 481
120 3300005331 Ga0070670_100124841 Ga0070670_1001248411 483
121 3300005354 Ga0070675_100018821 Ga0070675_1000188213 483
122 3300005364 Ga0070673_100149524 Ga0070673_1001495241 483
123 3300005539 Ga0068853_100144474 Ga0068853_1001444742 483
124 3300005547 Ga0070693_100070242 Ga0070693_1000702421 483
125 3300005614 Ga0068856_100046857 Ga0068856_1000468572 483
126 3300005618 Ga0068864_100125882 Ga0068864_1001258822 483
127 3300005719 Ga0068861_100056499 Ga0068861_1000564992 483
128 3300009553 Ga0105249_10021054 Ga0105249_100210545 483
129 3300013100 Ga0157373_10053534 Ga0157373_100535342 483
130 3300013105 Ga0157369_10009544 Ga0157369_100095448 483
131 3300014325 Ga0163163_10093465 Ga0163163_100934652 483
132 3300017792 Ga0163161_10092158 Ga0163161_100921582 483
133 3300025925 Ga0207650_10035045 Ga0207650_100350453 483
134 3300025925 Ga0207650_10073299 Ga0207650_100732992 483
135 3300025949 Ga0207667_10070669 Ga0207667_100706693 483
136 3300026041 Ga0207639_10061725 Ga0207639_100617252 483
137 3300031901 Ga0307406_10017108 Ga0307406_100171082 483
138 3300048918 Ga0496115_0018470 Ga0496115_0018470_585_2120 483
139 3300005842 Ga0068858_100068688 Ga0068858_1000686883 484
140 3300005843 Ga0068860_100007844 Ga0068860_1000078446 484
141 3300013297 Ga0157378_10074938 Ga0157378_100749383 484
142 3300014325 Ga0163163_10131588 Ga0163163_101315884 484
143 3300026035 Ga0207703_10018647 Ga0207703_100186473 484
144 3300005518 Ga0070699_100002830 Ga0070699_1000028302 485
145 3300009148 Ga0105243_10000518 Ga0105243_1000051815 485
146 3300009176 Ga0105242_10000287 Ga0105242_1000028711 485
147 3300025934 Ga0207686_10000026 Ga0207686_10000026112 485
148 3300025935 Ga0207709_10000042 Ga0207709_1000004220 485
149 3300005618 Ga0068864_100022642 Ga0068864_1000226422 487
150 3300006178 Ga0075367_10025255 Ga0075367_100252553 487
151 3300049581 Ga0501047_0101747 Ga0501047_0101747_73_2067 487
152 3300049744 Ga0501083_0048605 Ga0501083_0048605_67_2061 487
153 3300050494 nmdc:mga06z11_21179_c1 nmdc:mga06z11_21179_c1_80_1759 487
154 3300005536 Ga0070697_100009487 Ga0070697_1000094874 489
155 3300005546 Ga0070696_100026688 Ga0070696_1000266881 489
156 3300031344 Ga0265316_10008437 Ga0265316_100084372 489
157 3300005471 Ga0070698_100001987 Ga0070698_1000019874 490
158 3300009101 Ga0105247_10026403 Ga0105247_100264032 490
159 3300044656 Ga0466969_0051753 Ga0466969_0051753_365_1948 490
160 3300044684 Ga0466966_0052975 Ga0466966_0052975_40_1623 490
161 3300044693 Ga0466961_0040579 Ga0466961_0040579_884_2467 490
162 3300005459 Ga0068867_100052698 Ga0068867_1000526982 491
163 3300026089 Ga0207648_10073645 Ga0207648_100736452 491
164 3300028800 Ga0265338_10000456 Ga0265338_100004567 491
165 3300029957 Ga0265324_10004659 Ga0265324_100046592 491
166 3300044712 Ga0453684_0097039 Ga0453684_0097039_573_2201 491
167 3300046531 Ga0495665_0020564 Ga0495665_0020564_395_1966 491
168 3300046536 Ga0495587_0012696 Ga0495587_0012696_924_2495 491
169 3300046543 Ga0495645_0059140 Ga0495645_0059140_258_1829 491
170 3300046663 Ga0495635_0015329 Ga0495635_0015329_1362_2933 491
171 3300046675 Ga0495657_0096114 Ga0495657_0096114_219_1790 491
172 3300046678 Ga0495599_0005785 Ga0495599_0005785_5080_6651 491
173 3300046679 Ga0495623_0019761 Ga0495623_0019761_12_1583 491
174 3300047317 Ga0495604_0045571 Ga0495604_0045571_502_2073 491
175 3300047319 Ga0495674_0029765 Ga0495674_0029765_1170_2741 491
176 3300047322 Ga0495680_0022387 Ga0495680_0022387_1808_3379 491
177 iso_pu_bacteria 2599185354 2600203480 491
178 iso_pu_bacteria 2751185897 2753767642 491
179 3300005436 Ga0070713_100219341 Ga0070713_1002193411 492
180 3300013102 Ga0157371_10001737 Ga0157371_100017373 492
181 3300013307 Ga0157372_10000016 Ga0157372_10000016138 492
182 3300025928 Ga0207700_10205748 Ga0207700_102057481 492
183 3300025929 Ga0207664_10001673 Ga0207664_1000167311 492
184 iso_pu_bacteria 2751185782 2753266388 492
185 3300005436 Ga0070713_100006542 Ga0070713_1000065422 493
186 3300025928 Ga0207700_10009604 Ga0207700_100096043 493
187 3300049663 Ga0501223_000073 Ga0501223_000073_243_1778 493
188 iso_pu_bacteria 2738543023 2739304818 493
189 iso_pu_bacteria 2795385472 2795792270 493
190 3300005353 Ga0070669_100055161 Ga0070669_1000551612 495
191 3300005354 Ga0070675_100028397 Ga0070675_1000283973 495
192 3300005618 Ga0068864_100014572 Ga0068864_1000145722 495
193 3300005840 Ga0068870_10061955 Ga0068870_100619553 495
194 3300014325 Ga0163163_10024315 Ga0163163_100243152 495
195 3300025923 Ga0207681_10042920 Ga0207681_100429203 495
196 3300026088 Ga0207641_10024252 Ga0207641_100242522 495
197 3300050515 nmdc:mga0a205_106241_c1 nmdc:mga0a205_106241_c1_521_2182 495
198 3300005518 Ga0070699_100100324 Ga0070699_1001003242 497
199 3300005455 Ga0070663_100036680 Ga0070663_1000366802 498
200 3300013105 Ga0157369_10009735 Ga0157369_100097356 498
201 3300037312 Ga0395899_0000414 Ga0395899_0000414_1172_2755 498
202 3300049571 Ga0501034_0002318 Ga0501034_0002318_17583_19583 500
203 3300049823 Ga0501044_0057956 Ga0501044_0057956_210_2210 500
204 iso_pu_bacteria 2791354901 2791913259 501
205 3300007265 Ga0099794_10005806 Ga0099794_100058062 503
206 3300002741 JGI25157J39369_1005013 JGI25157J39369_10050132 509
207 3300025250 Ga0209026_1000361 Ga0209026_10003619 509

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13229

Beta_helix

Right handed beta helix region

233

352

0.92

PF12708

Pectate_lyase_3

Pectate lyase superfamily protein

77

154

0.86

PF00295

Glyco_hydro_28

Glycosyl hydrolases family 28

235

344

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
4mxn-assembly2.cif.gz_B crystal structure of a putative glycosyl hydrolase (parmer_00599) from parabacteroides merdae atcc 43184 at 1.95 a resolution 0.7776 27 253
4mxn-assembly3.cif.gz_C crystal structure of a putative glycosyl hydrolase (parmer_00599) from parabacteroides merdae atcc 43184 at 1.95 a resolution 0.767 25 253
4mxn-assembly4.cif.gz_D crystal structure of a putative glycosyl hydrolase (parmer_00599) from parabacteroides merdae atcc 43184 at 1.95 a resolution 0.7633 27 253
5olp-assembly2.cif.gz_B galacturonidase 0.7507 25 452
4mxn-assembly3.cif.gz_C crystal structure of a putative glycosyl hydrolase (parmer_00599) from parabacteroides merdae atcc 43184 at 1.95 a resolution 0.7441 25 253
ID Description Score Start End Superfamily
af_Q75LI0_20_422_2.160.20.10 Mainly Beta;3 Solenoid;Pectate Lyase C-like;Single-stranded right-handed beta-helix, Pectin lyase-like 0.7918 27 400 2.160.20.10
af_I1N942_20_390_2.160.20.10 Mainly Beta;3 Solenoid;Pectate Lyase C-like;Single-stranded right-handed beta-helix, Pectin lyase-like 0.7902 16 406 2.160.20.10
af_I1N942_20_390_2.160.20.10 Mainly Beta;3 Solenoid;Pectate Lyase C-like;Single-stranded right-handed beta-helix, Pectin lyase-like 0.782 16 406 2.160.20.10
af_Q65XN4_27_431_2.160.20.10 Mainly Beta;3 Solenoid;Pectate Lyase C-like;Single-stranded right-handed beta-helix, Pectin lyase-like 0.7512 27 400 2.160.20.10
af_I1MS92_65_454_2.160.20.10 Mainly Beta;3 Solenoid;Pectate Lyase C-like;Single-stranded right-handed beta-helix, Pectin lyase-like 0.7494 27 435 2.160.20.10
ID Description Score Start End GO Terms
AF-A0A519SKU7-F1-model_v4 Glycoside hydrolase family 28 protein 0.9902 27 289 GO:0004650
GO:0005975
AF-B3CFA0-F1-model_v4 Polygalacturonase (Pectinase) 0.9846 25 477 GO:0004557
AF-A0A139KMU5-F1-model_v4 deleted 0.9845 25 474
AF-A0A5J4PNI7-F1-model_v4 Glycoside hydrolase family 28 protein 0.9818 25 343
AF-A0A4Q3E6X0-F1-model_v4 deleted 0.9802 172 490

Feature Viewer

pLDDT pTM Quality
91.62 0.9 High
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Predicted Structure (AlphaFold2)

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