F315573

General Info

Members Datasets Scaffolds Average Seq Length
206 158 173 476

Family's Representative Sequence

Representative Sequence 3300047318|Ga0495636_0002734|Ga0495636_0002734_1601_3127
Length 508
Sequence MRGCRAERVWHGLGYALRVAHRDDPVDQNRMPDALREFWTALLAVPHLKLYLSLAWAVYLLGLGGWIVLQKREPVATLSWLVCLAALPYVGFIIYYWLGPQRIHRQRLRRFRAKANLPPPPEGFRPSADAIELARLGQATTGLPPTSATDARLLVDGGAKYSALLRDVAAAREHVHLEYYIFYPDQTGAALRDALIERARAGVKVRLLLDAVGSGKTPARFFHDLVAAGGELAWFHPSRFLQVWKRPWLNLRSHRKIVVIDGRIAYTGGINITDEEDERLRADAYRDLHVRVEGDVVSSLQLVFVEDWAYATGNPPLTLPLPVPQRGHVPVQVLVSGPDSSWEAIHRLHVGAIHSAERRVWLATPYFVPGEAARMALTSAALGGLDVRLLVPRRSDSRLVTLAARSYFDELLAAGVRVYEYGPRMLHTKALLCDDDLAIIGSANFDHRSFRLNFEVSLMFRNAALCADLAALMDTECAASGCVAVDRSQSLFATRLPEALARLVSPVL

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2571042365 Lysobacter oryzae DSM 21044 Isolate Rhizosphere
3 2643221559 Lysobacter sp. Root559 Isolate Unclassified
4 2643221573 Lysobacter sp. Root604 Isolate Unclassified
5 2643221586 Lysobacter sp. Root667 Isolate Unclassified
6 2643221593 Lysobacter sp. Root690 Isolate Unclassified
7 2643221612 Lysobacter sp. Root76 Isolate Unclassified
8 2643221695 Lysobacter sp. Root494 Isolate Unclassified
9 2643221720 Lysobacter sp. Root916 Isolate Unclassified
10 2643221727 Lysobacter sp. Root96 Isolate Unclassified
11 2643221728 Lysobacter sp. Root983 Isolate Unclassified
12 2721755523 Delftia sp. HK171 Isolate Unclassified
13 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
14 2818991457 Xanthomonas translucens 569 Isolate Unclassified
15 2839138175 Delftia acidovorans B15 Isolate Rhizosphere
16 2842780639 Pseudoxanthomonas sp. R-71986 Isolate Unclassified
17 2852684882 Xanthomonas sp. JAI131 Isolate Rhizosphere
18 2894414249 Luteimonas sp. LNNU 24178 Isolate Rhizosphere
19 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
20 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
21 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
22 2895525241 Pseudoxanthomonas sp. SGT-18 Isolate Rhizosphere
23 2919130084 Xanthomonas sp. 1678 Isolate Rhizosphere
24 2919513703 Luteimonas sp. 3794 Isolate Unclassified
25 2919675420 Luteimonas terrae 4099 Isolate Unclassified
26 2929195423 Xanthomonas sp. R-73098 Hybrid assembly Isolate Unclassified
27 2932422444 Comamonas sp. 4034 Isolate Rhizosphere
28 2941489479 Lysobacter enzymogenes 2943 Isolate Rhizosphere
29 2995948881 Lysobacter enzymogenes B25 Isolate Unclassified
30 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
31 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
32 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
33 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
34 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
35 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
36 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
37 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
38 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
39 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
40 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
41 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
42 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
43 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
44 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
45 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
46 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
47 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
48 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
49 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
50 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
51 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
52 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
53 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
54 3300012512 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.old.270510 Metagenome Rhizosphere
55 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
56 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
57 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
58 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
59 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
60 3300015689 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A02 Metagenome Rhizosphere
61 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
62 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
64 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
65 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
66 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
68 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
69 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
70 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
72 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
81 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
82 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
84 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
85 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
86 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
87 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
88 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
89 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
90 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
91 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
92 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
93 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
94 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
95 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
96 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
97 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
98 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
99 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
100 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
101 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
102 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
103 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
104 3300039145 Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JP6-T1 Metagenome Unclassified
105 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
106 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
107 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
108 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
109 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
110 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
111 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
112 3300041462 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_8 MetaG Metagenome Rhizoplane
113 3300041463 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG Metagenome Rhizoplane
114 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
115 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
116 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
117 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
118 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
119 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
120 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
121 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
122 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
123 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
124 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
125 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
126 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
127 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
128 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
129 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
130 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
131 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
132 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
133 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
134 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
135 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
136 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
137 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
138 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
139 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
140 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
143 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
144 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
146 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
147 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
148 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
149 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
150 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
151 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
152 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
153 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
154 8002869464 Pseudoxanthomonas helianthi 110414 Isolate Unclassified
155 8003014200 Lysobacter changpingensis Cm-3-T8 Isolate Rhizosphere
156 8021622325 Xanthomonas sp. LMG12462 Isolate Rhizosphere
157 8021626552 Xanthomonas sp. LMG12460 Isolate Rhizosphere
158 8021648035 Xanthomonas sp. LMG 12461 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.98
Metatranscriptomes 0
Isolates 16.02

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21.84
Nodule 0.97
Rhizoplane 3.88
Rhizosphere 57.28
Stem 0
Stem Tuber 0
Unclassified 16.02

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_3084909 2162886007 Bacteria 9687
2 JGI25151J46595_10000324 3300003187 Bacteria 51796
3 rootH2_10049482 3300003320 Bacteria 3450
4 Ga0055526_1000004 3300003771 Bacteria 355037
5 Ga0055537_1000015 3300003773 Bacteria 125861
6 Ga0055524_1000004 3300003775 Bacteria 354710
7 Ga0055524_1007132 3300003775 Bacteria 4786
8 Ga0055524_1007134 3300003775 Bacteria 4785
9 Ga0055524_1021425 3300003775 Bacteria 2143
10 Ga0055536_1000649 3300003781 Bacteria 23553
11 Ga0055534_1000007 3300003784 Bacteria 221693
12 Ga0055528_1000010 3300003790 Bacteria 221449
13 Ga0055530_10002625 3300003791 Bacteria 11285
14 Ga0055531_10004506 3300003794 Bacteria 8458
15 Ga0055531_10008346 3300003794 Bacteria 5484
16 Ga0058692_1000087 3300003856 Bacteria 64301
17 Ga0065704_10071125 3300005289 Bacteria 12991
18 Ga0065715_10002334 3300005293 Bacteria 4890
19 Ga0070670_100000259 3300005331 Bacteria 47203
20 Ga0070668_100053475 3300005347 Bacteria 3114
21 Ga0070669_100022780 3300005353 Bacteria 4480
22 Ga0070672_100002886 3300005543 Bacteria 11050
23 Ga0070665_100027732 3300005548 Bacteria 5702
24 Ga0068864_100058822 3300005618 Bacteria 3323
25 Ga0068863_100165799 3300005841 Bacteria 2118
26 Ga0075364_10000707 3300006051 Bacteria 17499
27 Ga0075364_10069722 3300006051 Bacteria 2314
28 Ga0075364_10070104 3300006051 Bacteria 2307
29 Ga0079104_1000011 3300006946 Bacteria 359962
30 Ga0105251_10000864 3300009011 Bacteria 27144
31 Ga0105243_10002341 3300009148 Bacteria 15856
32 Ga0157327_1000178 3300012512 Bacteria 3073
33 Ga0157371_10056799 3300013102 Bacteria 2776
34 Ga0157370_10234594 3300013104 Bacteria 1698
35 Ga0157369_10056245 3300013105 Bacteria 4246
36 Ga0182006_1019897 3300015261 Bacteria 2819
37 Ga0182005_1003935 3300015265 Bacteria 4903
38 Ga0183360_10004 3300015689 Bacteria 289992
39 Ga0163161_10065102 3300017792 Bacteria 2660
40 Ga0209565_1000002 3300025263 Bacteria 1423083
41 Ga0209673_1000002 3300025273 Bacteria 1423083
42 Ga0209673_1008592 3300025273 Bacteria 4531
43 Ga0209130_1007478 3300025284 Bacteria 3365
44 Ga0209675_1000002 3300025291 Bacteria 1423083
45 Ga0209675_1007094 3300025291 Bacteria 4359
46 Ga0209676_1000913 3300025292 Bacteria 36905
47 Ga0209676_1001466 3300025292 Bacteria 21985
48 Ga0209676_1008326 3300025292 Bacteria 4643
49 Ga0209025_1000021 3300025294 Bacteria 593083
50 Ga0209025_1000546 3300025294 Bacteria 70540
51 Ga0209025_1001609 3300025294 Bacteria 28293
52 Ga0209025_1037251 3300025294 Bacteria 2161
53 Ga0209564_1000004 3300025295 Bacteria 1424639
54 Ga0209758_1017837 3300025297 Bacteria 3510
55 Ga0209050_1000819 3300025298 Bacteria 43369
56 Ga0209050_1015810 3300025298 Bacteria 3138
57 Ga0209256_1000004 3300025299 Bacteria 1424643
58 Ga0209256_1003109 3300025299 Bacteria 12146
59 Ga0209256_1006532 3300025299 Bacteria 6123
60 Ga0209257_1000216 3300025304 Bacteria 136070
61 Ga0209257_1000353 3300025304 Bacteria 94267
62 Ga0209257_1001438 3300025304 Bacteria 28136
63 Ga0209257_1004717 3300025304 Bacteria 10222
64 Ga0209257_1005564 3300025304 Bacteria 8765
65 Ga0207713_1001392 3300025735 Bacteria 19597
66 Ga0207681_10004741 3300025923 Bacteria 8367
67 Ga0207650_10001054 3300025925 Bacteria 20513
68 Ga0207650_10138350 3300025925 Bacteria 1912
69 Ga0207706_10147702 3300025933 Bacteria 2068
70 Ga0207709_10000996 3300025935 Bacteria 21084
71 Ga0207709_10002736 3300025935 Bacteria 10875
72 Ga0207691_10000291 3300025940 Bacteria 49560
73 Ga0207648_10116029 3300026089 Bacteria 2353
74 Ga0209281_1000005 3300027111 Bacteria 1242284
75 Ga0209371_1000256 3300027312 Bacteria 64355
76 Ga0209983_1004219 3300027665 Bacteria 3030
77 Ga0265318_10000095 3300028577 Bacteria 82005
78 Ga0268256_1000216 3300030500 Bacteria 64353
79 Ga0314311_1009381 3300030733 Bacteria 3636
80 Ga0265332_10004421 3300031238 Bacteria 6601
81 Ga0265328_10003104 3300031239 Bacteria 7412
82 Ga0265320_10020523 3300031240 Bacteria 3580
83 Ga0265329_10005200 3300031242 Bacteria 5291
84 Ga0265331_10001933 3300031250 Bacteria 14519
85 Ga0265316_10008112 3300031344 Bacteria 9784
86 Ga0307513_10003604 3300031456 Bacteria 20946
87 Ga0307408_100017320 3300031548 Bacteria 4822
88 Ga0265313_10042115 3300031595 Bacteria 2245
89 Ga0265314_10010879 3300031711 Bacteria 7562
90 Ga0265342_10000595 3300031712 Bacteria 38129
91 Ga0307405_10072354 3300031731 Bacteria 2222
92 Ga0307413_10014835 3300031824 Bacteria 3973
93 Ga0307413_10034456 3300031824 Bacteria 2894
94 Ga0307413_10113695 3300031824 Bacteria 1818
95 Ga0307406_10063075 3300031901 Bacteria 2399
96 Ga0307407_10003926 3300031903 Bacteria 6207
97 Ga0307412_10044979 3300031911 Bacteria 2883
98 Ga0307412_10190712 3300031911 Bacteria 1549
99 Ga0307414_10000889 3300032004 Bacteria 15273
100 Ga0307414_10001036 3300032004 Bacteria 14214
101 Ga0307414_10002666 3300032004 Bacteria 9388
102 Ga0307414_10231455 3300032004 Bacteria 1524
103 Ga0307411_10131936 3300032005 Bacteria 1827
104 Ga0237816_00031 3300039145 Bacteria 8475
105 Ga0439439_0000298 3300041406 Bacteria 7918
106 Ga0439447_000177 3300041407 Bacteria 22345
107 Ga0439461_0001128 3300041410 Bacteria 4053
108 Ga0439465_0000046 3300041413 Bacteria 25484
109 Ga0439465_0000143 3300041413 Bacteria 17536
110 Ga0451791_1189230 3300041451 Bacteria 3208
111 Ga0451797_0390527 3300041453 Bacteria 2459
112 Ga0451800_0375826 3300041459 Bacteria 2140
113 Ga0451806_652963 3300041462 Bacteria 3998
114 Ga0451804_0199680 3300041463 Bacteria 2180
115 Ga0451807_2681655 3300041486 Bacteria 1830
116 Ga0451837_0603075 3300041494 Bacteria 4477
117 Ga0439445_0007741 3300042004 Bacteria 2500
118 Ga0439449_0000068 3300042007 Bacteria 32267
119 Ga0439449_0002666 3300042007 Bacteria 6948
120 Ga0439449_0008379 3300042007 Bacteria 3931
121 Ga0439449_0011965 3300042007 Bacteria 3262
122 Ga0439449_0014051 3300042007 Bacteria 3011
123 Ga0439449_0015491 3300042007 Bacteria 2865
124 Ga0439449_0024185 3300042007 Bacteria 2271
125 Ga0439449_0024402 3300042007 Bacteria 2261
126 Ga0495627_010319 3300046453 Bacteria 3401
127 Ga0495638_0062918 3300046460 Bacteria 2289
128 Ga0495610_0025186 3300046512 Bacteria 3199
129 Ga0495616_0023172 3300046513 Bacteria 3343
130 Ga0495632_0050930 3300046519 Bacteria 2040
131 Ga0495621_0000991 3300046539 Bacteria 7276
132 Ga0495633_0008762 3300046558 Bacteria 5662
133 Ga0495633_0035300 3300046558 Bacteria 2401
134 Ga0495656_0021795 3300046615 Bacteria 2499
135 Ga0495668_0000959 3300046616 Bacteria 32056
136 Ga0495670_0024253 3300046691 Bacteria 2998
137 Ga0495670_0049996 3300046691 Bacteria 2092
138 Ga0495636_0002734 3300047318 Bacteria 6798
139 Ga0495636_0008888 3300047318 Bacteria 3956
140 Ga0496106_0040289 3300048909 Bacteria 3498
141 Ga0496108_0072784 3300048911 Bacteria 2901
142 Ga0496117_0001338 3300048920 Bacteria 36231
143 Ga0496119_0004636 3300048922 Bacteria 13561
144 Ga0496120_0002709 3300048923 Bacteria 17355
145 Ga0496121_0012613 3300048924 Bacteria 9182
146 Ga0496122_0004509 3300048925 Bacteria 17203
147 Ga0496123_0000795 3300048926 Bacteria 50979
148 Ga0496123_0007650 3300048926 Bacteria 10110
149 Ga0496124_0000022 3300048927 Bacteria 421020
150 Ga0496124_0003592 3300048927 Bacteria 18847
151 Ga0496124_0089497 3300048927 Bacteria 2513
152 Ga0496126_0015577 3300048929 Bacteria 7640
153 Ga0501031_0069725 3300049568 Bacteria 2290
154 Ga0501033_0001415 3300049570 Bacteria 21308
155 Ga0501034_0001650 3300049571 Bacteria 28818
156 Ga0501034_0008788 3300049571 Bacteria 10630
157 Ga0501034_0011424 3300049571 Bacteria 9202
158 Ga0501034_0106691 3300049571 Bacteria 2794
159 Ga0501036_0007357 3300049572 Bacteria 8971
160 Ga0501036_0100924 3300049572 Bacteria 2441
161 Ga0501037_0006033 3300049573 Bacteria 8844
162 Ga0501038_0007572 3300049574 Bacteria 10013
163 Ga0501039_0006567 3300049575 Bacteria 8829
164 Ga0501043_0002889 3300049579 Bacteria 14350
165 Ga0501073_0015952 3300049589 Bacteria 5444
166 Ga0501225_0011892 3300049705 Bacteria 2448
167 Ga0501080_0004451 3300049742 Bacteria 12468
168 Ga0501035_0016349 3300049822 Bacteria 6843
169 Ga0501044_0015440 3300049823 Bacteria 8225
170 nmdc:mga00v17_1757_c1 3300050491 Bacteria 11253
171 nmdc:mga00v17_43500_c2 3300050491 Bacteria 2359
172 nmdc:mga00v17_4496_c1 3300050491 Bacteria 7260
173 Ga0500634_0000111 3300053161 Bacteria 30297

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300028577 Ga0265318_10000095 Ga0265318_100000955 418
2 3300031238 Ga0265332_10004421 Ga0265332_100044214 418
3 3300031239 Ga0265328_10003104 Ga0265328_100031041 418
4 3300031240 Ga0265320_10020523 Ga0265320_100205232 418
5 3300031242 Ga0265329_10005200 Ga0265329_100052004 418
6 3300031250 Ga0265331_10001933 Ga0265331_100019339 418
7 3300031344 Ga0265316_10008112 Ga0265316_100081124 418
8 3300031595 Ga0265313_10042115 Ga0265313_100421151 418
9 3300031711 Ga0265314_10010879 Ga0265314_100108793 418
10 3300031712 Ga0265342_10000595 Ga0265342_100005953 418
11 3300012512 Ga0157327_1000178 Ga0157327_10001783 439
12 3300005353 Ga0070669_100022780 Ga0070669_1000227806 455
13 3300005543 Ga0070672_100002886 Ga0070672_1000028865 455
14 3300025925 Ga0207650_10138350 Ga0207650_101383502 455
15 3300025940 Ga0207691_10000291 Ga0207691_1000029124 455
16 3300026089 Ga0207648_10116029 Ga0207648_101160292 455
17 3300048927 Ga0496124_0000022 Ga0496124_0000022_338306_339760 455
18 3300006051 Ga0075364_10070104 Ga0075364_100701043 456
19 3300031824 Ga0307413_10034456 Ga0307413_100344562 456
20 3300031903 Ga0307407_10003926 Ga0307407_100039265 456
21 3300032004 Ga0307414_10001036 Ga0307414_1000103613 456
22 3300003187 JGI25151J46595_10000324 JGI25151J46595_1000032417 458
23 3300027665 Ga0209983_1004219 Ga0209983_10042194 460
24 3300046691 Ga0495670_0024253 Ga0495670_0024253_181_1617 461
25 3300047318 Ga0495636_0008888 Ga0495636_0008888_1364_2800 461
26 3300003771 Ga0055526_1000004 Ga0055526_100000445 462
27 3300003773 Ga0055537_1000015 Ga0055537_100001580 462
28 3300003775 Ga0055524_1000004 Ga0055524_100000445 462
29 3300003784 Ga0055534_1000007 Ga0055534_1000007119 462
30 3300003790 Ga0055528_1000010 Ga0055528_100001088 462
31 3300015689 Ga0183360_10004 Ga0183360_100047 462
32 3300025263 Ga0209565_1000002 Ga0209565_1000002917 462
33 3300025273 Ga0209673_1000002 Ga0209673_1000002917 462
34 3300025291 Ga0209675_1000002 Ga0209675_1000002917 462
35 3300025294 Ga0209025_1000021 Ga0209025_1000021135 462
36 3300025295 Ga0209564_1000004 Ga0209564_1000004918 462
37 3300025297 Ga0209758_1017837 Ga0209758_10178374 462
38 3300025299 Ga0209256_1000004 Ga0209256_1000004918 462
39 3300049589 Ga0501073_0015952 Ga0501073_0015952_4041_5429 462
40 3300046539 Ga0495621_0000991 Ga0495621_0000991_261_1694 464
41 3300049571 Ga0501034_0011424 Ga0501034_0011424_5613_7058 464
42 3300050491 nmdc:mga00v17_4496_c1 nmdc:mga00v17_4496_c1_4813_6255 465
43 3300006051 Ga0075364_10069722 Ga0075364_100697221 466
44 3300050491 nmdc:mga00v17_43500_c2 nmdc:mga00v17_43500_c2_547_1989 466
45 3300003775 Ga0055524_1007132 Ga0055524_10071323 468
46 3300003775 Ga0055524_1007134 Ga0055524_10071341 468
47 3300003781 Ga0055536_1000649 Ga0055536_100064919 468
48 3300003791 Ga0055530_10002625 Ga0055530_100026258 468
49 3300025273 Ga0209673_1008592 Ga0209673_10085923 468
50 3300025284 Ga0209130_1007478 Ga0209130_10074783 468
51 3300025291 Ga0209675_1007094 Ga0209675_10070942 468
52 3300025292 Ga0209676_1000913 Ga0209676_10009137 468
53 3300025292 Ga0209676_1001466 Ga0209676_10014667 468
54 3300025292 Ga0209676_1008326 Ga0209676_10083266 468
55 3300025298 Ga0209050_1000819 Ga0209050_100081928 468
56 3300025299 Ga0209256_1003109 Ga0209256_10031098 468
57 3300025304 Ga0209257_1005564 Ga0209257_10055645 468
58 3300031824 Ga0307413_10014835 Ga0307413_100148352 468
59 3300049579 Ga0501043_0002889 Ga0501043_0002889_4855_6291 468
60 3300003775 Ga0055524_1021425 Ga0055524_10214252 469
61 3300006946 Ga0079104_1000011 Ga0079104_100001177 469
62 3300025294 Ga0209025_1000546 Ga0209025_100054650 469
63 3300025299 Ga0209256_1006532 Ga0209256_10065323 469
64 3300025304 Ga0209257_1001438 Ga0209257_100143826 469
65 3300025935 Ga0207709_10002736 Ga0207709_100027362 469
66 3300027111 Ga0209281_1000005 Ga0209281_1000005861 469
67 3300042007 Ga0439449_0024402 Ga0439449_0024402_89_1525 469
68 3300046616 Ga0495668_0000959 Ga0495668_0000959_29177_30613 470
69 iso_pu_bacteria 2643221593 2643974727 470
70 3300013102 Ga0157371_10056799 Ga0157371_100567993 472
71 3300025304 Ga0209257_1004717 Ga0209257_10047176 473
72 3300025933 Ga0207706_10147702 Ga0207706_101477021 473
73 iso_pu_bacteria 2721755523 2722883963 473
74 iso_pu_bacteria 2839138175 2839140265 473
75 iso_pu_bacteria 2932422444 2932426145 473
76 3300046512 Ga0495610_0025186 Ga0495610_0025186_899_2353 474
77 3300046513 Ga0495616_0023172 Ga0495616_0023172_110_1564 474
78 iso_pu_bacteria 2571042365 2572255620 474
79 iso_pu_bacteria 2643221559 2643817324 474
80 iso_pu_bacteria 2643221573 2643879949 474
81 iso_pu_bacteria 2643221586 2643939824 474
82 iso_pu_bacteria 2643221612 2644078352 474
83 iso_pu_bacteria 2643221695 2644530723 474
84 iso_pu_bacteria 2643221720 2644662501 474
85 iso_pu_bacteria 2643221727 2644696798 474
86 iso_pu_bacteria 2643221728 2644701086 474
87 iso_pu_bacteria 2941489479 2941492376 474
88 iso_pu_bacteria 2995948881 2995954149 474
89 iso_pu_bacteria 8003014200 8003017174 474
90 3300005618 Ga0068864_100058822 Ga0068864_1000588224 476
91 3300005841 Ga0068863_100165799 Ga0068863_1001657992 476
92 3300031731 Ga0307405_10072354 Ga0307405_100723542 476
93 3300032005 Ga0307411_10131936 Ga0307411_101319362 476
94 3300048909 Ga0496106_0040289 Ga0496106_0040289_897_2327 476
95 3300048911 Ga0496108_0072784 Ga0496108_0072784_1327_2757 476
96 iso_pu_bacteria 2919513703 2919513901 476
97 iso_pu_bacteria 2919675420 2919678666 476
98 3300046558 Ga0495633_0008762 Ga0495633_0008762_1054_2508 477
99 iso_pu_bacteria 2894414249 2894418084 477
100 iso_pu_bacteria 2895498888 2895503280 477
101 iso_pu_bacteria 2895511927 2895513123 477
102 iso_pu_bacteria 2895522137 2895523118 477
103 iso_pu_bacteria 2895525241 2895527022 477
104 iso_pu_bacteria 8002869464 8002870652 477
105 3300003320 rootH2_10049482 rootH2_100494822 478
106 3300003794 Ga0055531_10004506 Ga0055531_100045064 478
107 3300025294 Ga0209025_1001609 Ga0209025_100160927 478
108 3300025294 Ga0209025_1037251 Ga0209025_10372511 478
109 3300025298 Ga0209050_1015810 Ga0209050_10158103 478
110 3300025304 Ga0209257_1000353 Ga0209257_100035381 478
111 3300031824 Ga0307413_10113695 Ga0307413_101136952 478
112 3300031911 Ga0307412_10044979 Ga0307412_100449792 478
113 3300031911 Ga0307412_10190712 Ga0307412_101907121 478
114 3300032004 Ga0307414_10231455 Ga0307414_102314551 478
115 3300041406 Ga0439439_0000298 Ga0439439_0000298_5044_6480 478
116 3300042004 Ga0439445_0007741 Ga0439445_0007741_440_1876 478
117 3300042007 Ga0439449_0002666 Ga0439449_0002666_1196_2632 478
118 3300042007 Ga0439449_0014051 Ga0439449_0014051_1409_2845 478
119 3300042007 Ga0439449_0024185 Ga0439449_0024185_769_2205 478
120 3300049568 Ga0501031_0069725 Ga0501031_0069725_466_1905 478
121 3300049572 Ga0501036_0100924 Ga0501036_0100924_554_1993 478
122 3300041407 Ga0439447_000177 Ga0439447_000177_11199_12647 479
123 3300048924 Ga0496121_0012613 Ga0496121_0012613_32_1480 479
124 3300005347 Ga0070668_100053475 Ga0070668_1000534753 480
125 3300025923 Ga0207681_10004741 Ga0207681_100047414 480
126 3300031548 Ga0307408_100017320 Ga0307408_1000173202 480
127 3300031901 Ga0307406_10063075 Ga0307406_100630751 480
128 3300046615 Ga0495656_0021795 Ga0495656_0021795_554_2059 480
129 3300046691 Ga0495670_0049996 Ga0495670_0049996_124_1629 480
130 3300047318 Ga0495636_0002734 Ga0495636_0002734_1601_3127 480
131 3300049570 Ga0501033_0001415 Ga0501033_0001415_18665_20107 480
132 iso_pu_bacteria 2842780639 2842784036 480
133 3300005293 Ga0065715_10002334 Ga0065715_100023343 481
134 3300006051 Ga0075364_10000707 Ga0075364_100007078 481
135 3300013104 Ga0157370_10234594 Ga0157370_102345942 481
136 3300013105 Ga0157369_10056245 Ga0157369_100562456 481
137 3300030733 Ga0314311_1009381 Ga0314311_10093814 481
138 3300032004 Ga0307414_10002666 Ga0307414_100026663 481
139 3300042007 Ga0439449_0008379 Ga0439449_0008379_1255_2700 481
140 3300042007 Ga0439449_0011965 Ga0439449_0011965_776_2221 481
141 3300049571 Ga0501034_0008788 Ga0501034_0008788_2356_3801 481
142 3300049572 Ga0501036_0007357 Ga0501036_0007357_7006_8451 481
143 3300049573 Ga0501037_0006033 Ga0501037_0006033_461_1906 481
144 3300049574 Ga0501038_0007572 Ga0501038_0007572_7484_8929 481
145 3300049575 Ga0501039_0006567 Ga0501039_0006567_7056_8501 481
146 3300049742 Ga0501080_0004451 Ga0501080_0004451_9895_11340 481
147 3300049822 Ga0501035_0016349 Ga0501035_0016349_1814_3259 481
148 3300049823 Ga0501044_0015440 Ga0501044_0015440_6702_8147 481
149 3300050491 nmdc:mga00v17_1757_c1 nmdc:mga00v17_1757_c1_5173_6621 481
150 3300049571 Ga0501034_0106691 Ga0501034_0106691_515_2011 482
151 iso_pu_bacteria 2747842501 2748019744 482
152 3300003794 Ga0055531_10008346 Ga0055531_100083467 484
153 3300005548 Ga0070665_100027732 Ga0070665_1000277323 484
154 3300017792 Ga0163161_10065102 Ga0163161_100651022 484
155 3300025304 Ga0209257_1000216 Ga0209257_100021679 484
156 3300031456 Ga0307513_10003604 Ga0307513_1000360418 484
157 3300032004 Ga0307414_10000889 Ga0307414_100008897 484
158 3300039145 Ga0237816_00031 Ga0237816_00031_6347_7801 484
159 3300041410 Ga0439461_0001128 Ga0439461_0001128_1770_3224 484
160 3300041413 Ga0439465_0000046 Ga0439465_0000046_9010_10464 484
161 3300041413 Ga0439465_0000143 Ga0439465_0000143_2203_3657 484
162 3300041451 Ga0451791_1189230 Ga0451791_1189230_1492_2946 484
163 3300041453 Ga0451797_0390527 Ga0451797_0390527_762_2216 484
164 3300041494 Ga0451837_0603075 Ga0451837_0603075_2501_3955 484
165 3300042007 Ga0439449_0000068 Ga0439449_0000068_10436_11890 484
166 3300042007 Ga0439449_0015491 Ga0439449_0015491_926_2380 484
167 3300046460 Ga0495638_0062918 Ga0495638_0062918_462_1916 484
168 3300048926 Ga0496123_0007650 Ga0496123_0007650_1418_2872 484
169 3300048927 Ga0496124_0089497 Ga0496124_0089497_340_1794 484
170 3300049571 Ga0501034_0001650 Ga0501034_0001650_25836_27299 484
171 3300049705 Ga0501225_0011892 Ga0501225_0011892_434_1891 484
172 3300015261 Ga0182006_1019897 Ga0182006_10198973 486
173 3300046453 Ga0495627_010319 Ga0495627_010319_1575_3035 486
174 3300046519 Ga0495632_0050930 Ga0495632_0050930_257_1717 486
175 3300046558 Ga0495633_0035300 Ga0495633_0035300_600_2060 486
176 3300053161 Ga0500634_0000111 Ga0500634_0000111_20803_22263 486
177 iso_pu_bacteria 2818991457 2819661972 486
178 iso_pu_bacteria 2852684882 2852688647 486
179 iso_pu_bacteria 2919130084 2919133309 486
180 iso_pu_bacteria 2929195423 2929195439 486
181 iso_pu_bacteria 8021622325 8021622466 486
182 iso_pu_bacteria 8021626552 8021628848 486
183 iso_pu_bacteria 8021648035 8021648261 486
184 2162886007 SwRhRL2b_contig_3084909 SwRhRL2b_0276.00001840 490
185 3300003856 Ga0058692_1000087 Ga0058692_100008730 490
186 3300005289 Ga0065704_10071125 Ga0065704_100711252 490
187 3300005331 Ga0070670_100000259 Ga0070670_10000025928 490
188 3300009011 Ga0105251_10000864 Ga0105251_1000086415 490
189 3300009148 Ga0105243_10002341 Ga0105243_100023414 490
190 3300015265 Ga0182005_1003935 Ga0182005_10039353 490
191 3300025735 Ga0207713_1001392 Ga0207713_100139215 490
192 3300025925 Ga0207650_10001054 Ga0207650_100010547 490
193 3300025935 Ga0207709_10000996 Ga0207709_1000099611 490
194 3300027312 Ga0209371_1000256 Ga0209371_100025631 490
195 3300030500 Ga0268256_1000216 Ga0268256_100021632 490
196 3300041459 Ga0451800_0375826 Ga0451800_0375826_345_1817 490
197 3300041462 Ga0451806_652963 Ga0451806_652963_18_1490 490
198 3300041463 Ga0451804_0199680 Ga0451804_0199680_634_2106 490
199 3300041486 Ga0451807_2681655 Ga0451807_2681655_345_1817 490
200 3300048920 Ga0496117_0001338 Ga0496117_0001338_31577_33049 490
201 3300048922 Ga0496119_0004636 Ga0496119_0004636_6250_7722 490
202 3300048923 Ga0496120_0002709 Ga0496120_0002709_5911_7383 490
203 3300048925 Ga0496122_0004509 Ga0496122_0004509_5796_7268 490
204 3300048926 Ga0496123_0000795 Ga0496123_0000795_39553_41025 490
205 3300048927 Ga0496124_0003592 Ga0496124_0003592_3167_4639 490
206 3300048929 Ga0496126_0015577 Ga0496126_0015577_5462_6934 490

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13091

PLDc_2

PLD-like domain

350

476

0.94

PF00614

PLDc

Phospholipase D Active site motif

422

449

0.92

PF00614

PLDc

Phospholipase D Active site motif

249

275

0.91

PF13396

PLDc_N

Phospholipase_D-nuclease N-terminal

55

100

0.88

PF13091

PLDc_2

PLD-like domain

164

295

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
1byr-assembly1.cif.gz_A crystal structure of a phospholipase d family member, nuc from salmonella typhimurium 0.8705 311 466
1byr-assembly1.cif.gz_A crystal structure of a phospholipase d family member, nuc from salmonella typhimurium 0.8546 311 466
4gel-assembly1.cif.gz_A crystal structure of zucchini 0.8264 313 465
4gem-assembly1.cif.gz_B crystal structure of zucchini (k171a) 0.8181 313 465
4gem-assembly1.cif.gz_A crystal structure of zucchini (k171a) 0.8167 313 463
ID Description Score Start End Superfamily
af_P0A6H8_316_458_3.30.870.10 Alpha Beta;2-Layer Sandwich;Endonuclease; Chain A;Endonuclease Chain A 0.9793 327 463 3.30.870.10
af_P0AA84_201_339_3.30.870.10 Alpha Beta;2-Layer Sandwich;Endonuclease; Chain A;Endonuclease Chain A 0.9699 325 456 3.30.870.10
af_Q2FWG8_323_468_3.30.870.10 Alpha Beta;2-Layer Sandwich;Endonuclease; Chain A;Endonuclease Chain A 0.967 320 465 3.30.870.10
af_Q2FWG8_323_468_3.30.870.10 Alpha Beta;2-Layer Sandwich;Endonuclease; Chain A;Endonuclease Chain A 0.9606 320 465 3.30.870.10
af_Q2FYW4_304_492_3.30.870.10 Alpha Beta;2-Layer Sandwich;Endonuclease; Chain A;Endonuclease Chain A 0.953 309 488 3.30.870.10
ID Description Score Start End GO Terms
AF-A0A537CZV9-F1-model_v4 Cardiolipin synthase B 0.9762 129 206 GO:0008808
GO:0016020
GO:0032049
AF-A0A5J4SA93-F1-model_v4 Major cardiolipin synthase ClsA (EC 2.7.8.-) 0.968 329 490 GO:0030572
GO:0032049
AF-A0A663BLZ6-F1-model_v4 deleted 0.9641 345 490
AF-V4J300-F1-model_v4 PLD phosphodiesterase domain-containing protein 0.9638 311 490 GO:0030572
GO:0032049
AF-A0A1V5JVL2-F1-model_v4 Major cardiolipin synthase ClsA (EC 2.7.8.-) 0.9638 329 490 GO:0030572
GO:0032049

Feature Viewer

pLDDT pTM Quality
83.75 0.81 High
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Predicted Structure (AlphaFold2)

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