F315047

General Info

Members Datasets Scaffolds Average Seq Length
206 163 194 304

Family's Representative Sequence

Representative Sequence 3300009101|Ga0105247_10016891|Ga0105247_100168914
Length 325
Sequence MRTTFSDSLVQLACRDHRVVLLTGDHGYALFDAFRSRCASQYINAGVAEQNMVGMAAGLARAGFKPFVYGLSAFVPIRVLEQIKLDVAHDNLPVVFLGDGAGFVYSTLGTSHQATEDIACTRAIAQLAVFSPADHFELSLCMQHAYDLQRPVYLRMGKADRGEVHTAQLKLNVPGQLFRVRPGSEGGLSLIATGSLVKTAVELAGRAFPDATVWSAPFLKPICVAQAAQICAQSCALVTLEEHSIHGGLGSLMAEISTTSYPRPILRVGVQDRFSELCGSYEYLLVEHGLDIDSIERQVRGFTARLERDCSRSSSMPGTAVELAS

Samples

Sample ID Description Type Environment
1 2513237082 Paraburkholderia mimosarum STM3621 Isolate Nodule
2 2515154123 Trinickia symbiotica JPY347 Isolate Nodule
3 2547132103 Chromobacterium sp. C-61 Isolate Rhizosphere
4 2600255067 Paraburkholderia kururiensis thiooxydans NBRC 107107 Isolate Unclassified
5 2818991446 Variovorax sp. 1180 Isolate Unclassified
6 2838054893 Variovorax guangxiensis 34/80 Isolate Nodule
7 2857547612 Janthinobacterium sp. R-74502 Isolate Unclassified
8 2885080285 Janthinobacterium sp. AD80 Isolate Rhizosphere
9 2899924645 Variovorax sp. 369 Isolate Unclassified
10 2921643360 Paraburkholderia steynii HC1.1ba Isolate Nodule
11 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
12 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
13 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
14 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
15 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
16 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
17 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
18 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
19 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
20 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
21 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
22 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
23 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
24 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
25 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
26 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
27 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
28 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
29 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
30 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
31 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
32 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
33 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
34 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
35 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
36 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
37 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
38 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
39 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
40 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
41 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
42 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
43 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
44 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
45 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
46 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
47 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
48 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
51 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
52 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
53 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
54 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
55 3300015683 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_F04 Metagenome Rhizosphere
56 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
57 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
59 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
60 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
61 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
62 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
64 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
81 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
82 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
83 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
84 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
85 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
86 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
87 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
88 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
89 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
90 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
91 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
92 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
93 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
94 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
95 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
96 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
97 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
98 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
99 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
100 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
101 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
102 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
103 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
104 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
105 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
106 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
107 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
108 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
109 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
110 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
111 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
112 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
113 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
114 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
115 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
116 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
117 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
118 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
119 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
120 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
121 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
122 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
123 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
124 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
125 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
126 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
127 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
128 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
129 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
130 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
131 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
132 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
133 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
134 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
135 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
136 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
137 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
139 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
140 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
143 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
144 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
145 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
146 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
147 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
148 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
149 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
150 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
151 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
152 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
153 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
154 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
155 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
156 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
157 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
158 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
159 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
160 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
161 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
162 641736154 Burkholderia ambifaria IOP40-10 Isolate Rhizosphere
163 8020945358 Burkholderia sp. BE17 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.17
Metatranscriptomes 0
Isolates 5.83

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 22.82
Nodule 3.4
Rhizoplane 1.94
Rhizosphere 52.43
Stem 0
Stem Tuber 0
Unclassified 19.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10004722 3300002067 Bacteria 4550
2 JGI25156J39149_1000313 3300002705 Bacteria 32091
3 JGI25158J39367_1000009 3300002739 Bacteria 53723
4 JGI25159J45721_1000039 3300002987 Bacteria 69707
5 JGI25159J45721_1000778 3300002987 Bacteria 13861
6 rootH1_10111169 3300003316 Unclassified 2881
7 rootL2_10215654 3300003322 Bacteria 1657
8 rootL2_10362261 3300003322 Bacteria 1480
9 JGI25160J50197_1000106 3300003354 Bacteria 80449
10 JGI25161J50226_1000041 3300003374 Bacteria 124485
11 JGI25161J50226_1000115 3300003374 Bacteria 62500
12 Ga0055534_1000554 3300003784 Bacteria 19780
13 Ga0055531_10006690 3300003794 Bacteria 6460
14 Ga0055543_1000092 3300004625 Bacteria 78538
15 Ga0055543_1000094 3300004625 Bacteria 78040
16 Ga0065165_1000434 3300005262 Bacteria 65848
17 Ga0065165_1000492 3300005262 Bacteria 61002
18 Ga0070660_100000537 3300005339 Bacteria 25342
19 Ga0070661_100121184 3300005344 Unclassified 1959
20 Ga0070659_100002095 3300005366 Bacteria 14218
21 Ga0070700_100006049 3300005441 Bacteria 6443
22 Ga0070663_100000402 3300005455 Bacteria 22670
23 Ga0070678_100481365 3300005456 Bacteria 1092
24 Ga0068855_100003503 3300005563 Bacteria 19223
25 Ga0068855_100038804 3300005563 Bacteria 5657
26 Ga0070664_100031485 3300005564 Bacteria 4432
27 Ga0075365_10167868 3300006038 Bacteria 1531
28 Ga0075363_100004537 3300006048 Bacteria 6088
29 Ga0075364_10032158 3300006051 Bacteria 3371
30 Ga0075362_10013952 3300006177 Bacteria 3231
31 Ga0075367_10007791 3300006178 Bacteria 5509
32 Ga0075366_10014126 3300006195 Bacteria 4556
33 Ga0075366_10016006 3300006195 Bacteria 4306
34 Ga0075370_10003436 3300006353 Bacteria 7540
35 Ga0099824_1034498 3300006942 Bacteria 1618
36 Ga0099823_1000804 3300006944 Bacteria 23356
37 Ga0105240_10024586 3300009093 Bacteria 7935
38 Ga0105247_10016891 3300009101 Unclassified 4376
39 Ga0105241_10012640 3300009174 Bacteria 6196
40 Ga0105241_10311899 3300009174 Bacteria 1353
41 Ga0105237_10088897 3300009545 Bacteria 3078
42 Ga0105239_10008956 3300010375 Bacteria 11325
43 Ga0105239_10583832 3300010375 Bacteria 1274
44 Ga0157373_10081629 3300013100 Bacteria 2279
45 Ga0157371_10097042 3300013102 Bacteria 2089
46 Ga0157370_10013356 3300013104 Bacteria 8460
47 Ga0157370_10067268 3300013104 Bacteria 3386
48 Ga0157369_10142742 3300013105 Bacteria 2533
49 Ga0157372_10180400 3300013307 Bacteria 2444
50 Ga0157372_10330901 3300013307 Bacteria 1774
51 Ga0182008_10045715 3300014497 Bacteria 2177
52 Ga0157379_10032902 3300014968 Unclassified 4623
53 Ga0182006_1000010 3300015261 Bacteria 413414
54 Ga0182006_1027499 3300015261 Bacteria 2321
55 Ga0182007_10000021 3300015262 Bacteria 193408
56 Ga0182005_1001431 3300015265 Bacteria 9604
57 Ga0183362_10005 3300015683 Bacteria 437616
58 Ga0209436_100042 3300025208 Bacteria 73600
59 Ga0209672_101482 3300025228 Bacteria 8273
60 Ga0209759_1000562 3300025256 Bacteria 37533
61 Ga0209759_1001398 3300025256 Bacteria 13815
62 Ga0209673_1004452 3300025273 Bacteria 7498
63 Ga0209130_1000099 3300025284 Bacteria 141717
64 Ga0209130_1000227 3300025284 Bacteria 73760
65 Ga0209675_1000546 3300025291 Bacteria 27468
66 Ga0209050_1000366 3300025298 Bacteria 86616
67 Ga0209050_1004070 3300025298 Bacteria 10233
68 Ga0207426_1000062 3300025302 Bacteria 362040
69 Ga0209051_1000469 3300025303 Bacteria 52936
70 Ga0209257_1001641 3300025304 Bacteria 25564
71 Ga0207710_10038169 3300025900 Unclassified 2123
72 Ga0207647_10011983 3300025904 Bacteria 6054
73 Ga0207654_10001203 3300025911 Bacteria 13874
74 Ga0207695_10011856 3300025913 Bacteria 10512
75 Ga0207657_10001827 3300025919 Bacteria 22959
76 Ga0207649_10424135 3300025920 Bacteria 999
77 Ga0207694_10030597 3300025924 Bacteria 4110
78 Ga0207664_10251372 3300025929 Bacteria 1543
79 Ga0207690_10000615 3300025932 Bacteria 23019
80 Ga0207679_10081479 3300025945 Bacteria 2475
81 Ga0207667_10003296 3300025949 Bacteria 19914
82 Ga0207678_10006529 3300026067 Bacteria 10340
83 Ga0207708_10006583 3300026075 Bacteria 8598
84 Ga0207683_10242602 3300026121 Bacteria 1644
85 Ga0209389_1000523 3300027296 Bacteria 23302
86 Ga0209813_10030149 3300027866 Bacteria 1592
87 Ga0307515_10002251 3300028794 Bacteria 42303
88 Ga0316183_1061050 3300030742 Bacteria 2072
89 Ga0307513_10060797 3300031456 Bacteria 4003
90 Ga0307509_10000904 3300031507 Bacteria 50711
91 Ga0307408_100010473 3300031548 Bacteria 6114
92 Ga0307508_10002035 3300031616 Bacteria 21882
93 Ga0307508_10002958 3300031616 Bacteria 17560
94 Ga0307411_10070034 3300032005 Bacteria 2372
95 Ga0307507_10149860 3300033179 Bacteria 1759
96 Ga0307510_10002154 3300033180 Bacteria 22232
97 Ga0307510_10003569 3300033180 Bacteria 18167
98 Ga0450918_003669 3300042531 Bacteria 2842
99 Ga0466969_0010797 3300044656 Bacteria 4838
100 Ga0466969_0130031 3300044656 Bacteria 1168
101 Ga0466965_0028774 3300044683 Plasmid 2701
102 Ga0466966_0000556 3300044684 Bacteria 23802
103 Ga0466964_0000063 3300044706 Bacteria 23331
104 Ga0453684_0016091 3300044712 Bacteria 11738
105 Ga0466959_0000447 3300045049 Bacteria 24046
106 Ga0466958_0000259 3300045836 Bacteria 20492
107 Ga0495651_0000872 3300046462 Bacteria 23438
108 Ga0495605_0023388 3300046474 Bacteria 3251
109 Ga0495584_0002120 3300046491 Bacteria 11355
110 Ga0495585_0001745 3300046492 Bacteria 16560
111 Ga0495596_0010616 3300046500 Unclassified 4003
112 Ga0495607_0000962 3300046501 Bacteria 26634
113 Ga0495616_0000178 3300046513 Bacteria 54382
114 Ga0495631_0000234 3300046518 Bacteria 38074
115 Ga0495643_0080623 3300046522 Bacteria 1694
116 Ga0495643_0151102 3300046522 Bacteria 1150
117 Ga0495644_0001354 3300046523 Bacteria 10008
118 Ga0495642_0032495 3300046528 Bacteria 2094
119 Ga0495652_0143432 3300046529 Bacteria 1875
120 Ga0495609_0000002 3300046538 Bacteria 739816
121 Ga0495656_0012079 3300046615 Bacteria 3181
122 Ga0495668_0003760 3300046616 Bacteria 11133
123 Ga0495661_0000207 3300046665 Bacteria 67846
124 Ga0495661_0070137 3300046665 Bacteria 2052
125 Ga0495589_0000009 3300046794 Bacteria 256265
126 Ga0495660_0112262 3300046810 Bacteria 1389
127 Ga0495672_0000125 3300047320 Bacteria 118271
128 Ga0495672_0045600 3300047320 Bacteria 2622
129 Ga0495687_000013 3300047443 Bacteria 371058
130 Ga0495677_0000024 3300047445 Bacteria 99215
131 Ga0495679_000766 3300047446 Bacteria 20467
132 Ga0495686_0039270 3300047472 Bacteria 3024
133 Ga0495686_0166228 3300047472 Bacteria 1286
134 Ga0495602_0004979 3300048088 Bacteria 13922
135 Ga0495626_0000151 3300048091 Bacteria 86296
136 Ga0495626_0002227 3300048091 Bacteria 13910
137 Ga0495626_0021526 3300048091 Bacteria 3199
138 Ga0496101_0034731 3300048904 Bacteria 3564
139 Ga0496102_0011448 3300048905 Bacteria 7648
140 Ga0496102_0035829 3300048905 Bacteria 4469
141 Ga0496102_0107934 3300048905 Bacteria 2592
142 Ga0496116_0015775 3300048919 Bacteria 5952
143 Ga0496116_0115793 3300048919 Bacteria 1563
144 Ga0496117_0000010 3300048920 Bacteria 611954
145 Ga0496117_0001566 3300048920 Bacteria 32470
146 Ga0496117_0001689 3300048920 Bacteria 30653
147 Ga0496118_0000009 3300048921 Bacteria 611954
148 Ga0496118_0001796 3300048921 Bacteria 30970
149 Ga0496118_0001821 3300048921 Bacteria 30627
150 Ga0496119_0123992 3300048922 Bacteria 1416
151 Ga0496121_0002120 3300048924 Bacteria 31168
152 Ga0496121_0002670 3300048924 Bacteria 26700
153 Ga0496121_0003426 3300048924 Bacteria 22673
154 Ga0496121_0006329 3300048924 Bacteria 14764
155 Ga0496121_0013266 3300048924 Bacteria 8874
156 Ga0496122_0062403 3300048925 Bacteria 2728
157 Ga0496123_0053703 3300048926 Bacteria 2660
158 Ga0496124_0001755 3300048927 Bacteria 30277
159 Ga0496124_0020176 3300048927 Bacteria 6169
160 Ga0496125_0007187 3300048928 Bacteria 11871
161 Ga0496126_0002289 3300048929 Bacteria 26393
162 Ga0496126_0002663 3300048929 Bacteria 23646
163 Ga0496126_0003931 3300048929 Bacteria 18201
164 Ga0495678_021360 3300049459 Unclassified 2852
165 Ga0501031_0069422 3300049568 Bacteria 2295
166 Ga0501033_0037671 3300049570 Bacteria 3619
167 Ga0501034_0056451 3300049571 Bacteria 3951
168 Ga0501034_0072408 3300049571 Bacteria 3455
169 Ga0501036_0366205 3300049572 Bacteria 1203
170 Ga0501038_0034733 3300049574 Bacteria 4432
171 Ga0501047_0294918 3300049581 Bacteria 1465
172 Ga0501047_0361779 3300049581 Bacteria 1287
173 Ga0501070_0143790 3300049586 Bacteria 1969
174 Ga0501235_000480 3300049669 Bacteria 7915
175 Ga0501080_0083987 3300049742 Bacteria 2959
176 Ga0501083_0071532 3300049744 Bacteria 2306
177 Ga0501044_0012728 3300049823 Bacteria 9111
178 Ga0501044_0041388 3300049823 Bacteria 4796
179 nmdc:mga00v17_13999_c1 3300050491 Bacteria 4062
180 nmdc:mga0yw44_22236_c1 3300050492 Bacteria 3553
181 nmdc:mga0k408_21463_c1 3300050493 Bacteria 3627
182 nmdc:mga0k408_5180_c1 3300050493 Bacteria 6914
183 nmdc:mga0k408_84287_c1 3300050493 Bacteria 1864
184 nmdc:mga06z11_252477_c1 3300050494 Bacteria 1039
185 nmdc:mga04h51_43353_c1 3300050495 Bacteria 1480
186 nmdc:mga07m45_2761_c1 3300050496 Bacteria 8284
187 nmdc:mga0qj67_97542_c1 3300050509 Bacteria 2367
188 Ga0500610_0000109 3300053079 Bacteria 24958
189 Ga0500618_013152 3300053125 Bacteria 2149
190 Ga0500642_0057532 3300053130 Bacteria 1735
191 Ga0500568_0004337 3300053139 Bacteria 7606
192 Ga0500619_000059 3300053154 Bacteria 33814
193 Ga0500622_0005025 3300053156 Bacteria 8060
194 Ga0500645_000257 3300053730 Bacteria 38752

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300053730 Ga0500645_000257 Ga0500645_000257_18419_19342 251
2 3300014968 Ga0157379_10032902 Ga0157379_100329023 253
3 3300048905 Ga0496102_0035829 Ga0496102_0035829_1786_2580 253
4 3300048919 Ga0496116_0115793 Ga0496116_0115793_207_1001 253
5 3300048920 Ga0496117_0001689 Ga0496117_0001689_22676_23470 253
6 3300048921 Ga0496118_0001821 Ga0496118_0001821_7186_7980 253
7 3300048927 Ga0496124_0020176 Ga0496124_0020176_1128_1922 253
8 3300048929 Ga0496126_0002663 Ga0496126_0002663_1413_2207 253
9 3300048922 Ga0496119_0123992 Ga0496119_0123992_642_1406 254
10 iso_pu_bacteria 2921643360 2921644688 259
11 3300044683 Ga0466965_0028774 Ga0466965_0028774_1858_2673 263
12 3300032005 Ga0307411_10070034 Ga0307411_100700342 270
13 3300046522 Ga0495643_0151102 Ga0495643_0151102_77_1021 270
14 3300046522 Ga0495643_0080623 Ga0495643_0080623_797_1627 273
15 3300031548 Ga0307408_100010473 Ga0307408_1000104732 274
16 3300050493 nmdc:mga0k408_5180_c1 nmdc:mga0k408_5180_c1_2558_3442 283
17 3300050496 nmdc:mga07m45_2761_c1 nmdc:mga07m45_2761_c1_6729_7613 283
18 3300003322 rootL2_10215654 rootL2_102156543 286
19 3300006195 Ga0075366_10016006 Ga0075366_100160062 288
20 3300015683 Ga0183362_10005 Ga0183362_1000562 291
21 3300044656 Ga0466969_0130031 Ga0466969_0130031_158_1072 292
22 3300044684 Ga0466966_0000556 Ga0466966_0000556_11756_12670 292
23 3300045049 Ga0466959_0000447 Ga0466959_0000447_9411_10325 292
24 iso_pu_bacteria 2885080285 2885084623 296
25 3300013102 Ga0157371_10097042 Ga0157371_100970422 297
26 3300046462 Ga0495651_0000872 Ga0495651_0000872_1584_2492 298
27 3300046529 Ga0495652_0143432 Ga0495652_0143432_204_1112 298
28 3300048088 Ga0495602_0004979 Ga0495602_0004979_11431_12339 298
29 iso_pu_bacteria 2818991446 2819602360 298
30 iso_pu_bacteria 2838054893 2838054982 298
31 iso_pu_bacteria 2899924645 2899927062 298
32 iso_pu_bacteria 2547132103 2547373871 299
33 iso_pu_bacteria 2857547612 2857548428 299
34 3300003794 Ga0055531_10006690 Ga0055531_100066903 300
35 3300025273 Ga0209673_1004452 Ga0209673_10044523 300
36 3300025298 Ga0209050_1004070 Ga0209050_10040706 300
37 3300025303 Ga0209051_1000469 Ga0209051_100046924 300
38 3300025304 Ga0209257_1001641 Ga0209257_100164123 300
39 3300044656 Ga0466969_0010797 Ga0466969_0010797_1736_2662 300
40 3300045836 Ga0466958_0000259 Ga0466958_0000259_11560_12486 300
41 iso_pu_bacteria 2515154123 2515688497 300
42 3300046500 Ga0495596_0010616 Ga0495596_0010616_1059_1973 301
43 3300046810 Ga0495660_0112262 Ga0495660_0112262_246_1166 301
44 3300047472 Ga0495686_0039270 Ga0495686_0039270_120_1040 301
45 3300048905 Ga0496102_0011448 Ga0496102_0011448_6064_6975 301
46 3300053156 Ga0500622_0005025 Ga0500622_0005025_3039_3956 301
47 iso_pu_bacteria 2513237082 2513555966 301
48 iso_pu_bacteria 2600255067 2600812674 301
49 iso_pu_bacteria 641736154 642416134 301
50 iso_pu_bacteria 8020945358 8020951652 301
51 3300003322 rootL2_10362261 rootL2_103622612 302
52 3300003784 Ga0055534_1000554 Ga0055534_10005546 302
53 3300005344 Ga0070661_100121184 Ga0070661_1001211842 302
54 3300006038 Ga0075365_10167868 Ga0075365_101678681 302
55 3300006048 Ga0075363_100004537 Ga0075363_1000045376 302
56 3300006051 Ga0075364_10032158 Ga0075364_100321582 302
57 3300006177 Ga0075362_10013952 Ga0075362_100139522 302
58 3300006178 Ga0075367_10007791 Ga0075367_100077916 302
59 3300009545 Ga0105237_10088897 Ga0105237_100888973 302
60 3300013104 Ga0157370_10013356 Ga0157370_100133567 302
61 3300025291 Ga0209675_1000546 Ga0209675_100054613 302
62 3300027866 Ga0209813_10030149 Ga0209813_100301492 302
63 3300028794 Ga0307515_10002251 Ga0307515_1000225130 302
64 3300030742 Ga0316183_1061050 Ga0316183_10610502 302
65 3300031456 Ga0307513_10060797 Ga0307513_100607973 302
66 3300044712 Ga0453684_0016091 Ga0453684_0016091_9460_10377 302
67 3300046518 Ga0495631_0000234 Ga0495631_0000234_18986_19900 302
68 3300046523 Ga0495644_0001354 Ga0495644_0001354_636_1553 302
69 3300046616 Ga0495668_0003760 Ga0495668_0003760_7868_8785 302
70 3300046665 Ga0495661_0070137 Ga0495661_0070137_228_1145 302
71 3300047446 Ga0495679_000766 Ga0495679_000766_5935_6852 302
72 3300048091 Ga0495626_0002227 Ga0495626_0002227_188_1105 302
73 3300048091 Ga0495626_0021526 Ga0495626_0021526_138_1055 302
74 3300048924 Ga0496121_0002670 Ga0496121_0002670_20999_21916 302
75 3300048924 Ga0496121_0003426 Ga0496121_0003426_4527_5444 302
76 3300049459 Ga0495678_021360 Ga0495678_021360_1108_2025 302
77 3300049570 Ga0501033_0037671 Ga0501033_0037671_2447_3361 302
78 3300049572 Ga0501036_0366205 Ga0501036_0366205_216_1130 302
79 3300049581 Ga0501047_0294918 Ga0501047_0294918_459_1373 302
80 3300049586 Ga0501070_0143790 Ga0501070_0143790_841_1755 302
81 3300049823 Ga0501044_0012728 Ga0501044_0012728_5438_6352 302
82 3300050491 nmdc:mga00v17_13999_c1 nmdc:mga00v17_13999_c1_2780_3700 302
83 3300050492 nmdc:mga0yw44_22236_c1 nmdc:mga0yw44_22236_c1_2505_3422 302
84 3300050493 nmdc:mga0k408_21463_c1 nmdc:mga0k408_21463_c1_1895_2812 302
85 3300050493 nmdc:mga0k408_84287_c1 nmdc:mga0k408_84287_c1_911_1828 302
86 3300050494 nmdc:mga06z11_252477_c1 nmdc:mga06z11_252477_c1_41_958 302
87 3300050495 nmdc:mga04h51_43353_c1 nmdc:mga04h51_43353_c1_543_1460 302
88 3300053079 Ga0500610_0000109 Ga0500610_0000109_18918_19835 302
89 3300053125 Ga0500618_013152 Ga0500618_013152_697_1614 302
90 3300053139 Ga0500568_0004337 Ga0500568_0004337_1776_2717 302
91 3300002739 JGI25158J39367_1000009 JGI25158J39367_100000923 303
92 3300002987 JGI25159J45721_1000039 JGI25159J45721_100003952 303
93 3300002987 JGI25159J45721_1000778 JGI25159J45721_100077810 303
94 3300003354 JGI25160J50197_1000106 JGI25160J50197_100010628 303
95 3300003374 JGI25161J50226_1000041 JGI25161J50226_100004168 303
96 3300003374 JGI25161J50226_1000115 JGI25161J50226_100011522 303
97 3300004625 Ga0055543_1000092 Ga0055543_100009219 303
98 3300004625 Ga0055543_1000094 Ga0055543_100009416 303
99 3300005262 Ga0065165_1000434 Ga0065165_100043428 303
100 3300005262 Ga0065165_1000492 Ga0065165_100049246 303
101 3300005441 Ga0070700_100006049 Ga0070700_1000060494 303
102 3300005563 Ga0068855_100038804 Ga0068855_1000388044 303
103 3300006195 Ga0075366_10014126 Ga0075366_100141262 303
104 3300006353 Ga0075370_10003436 Ga0075370_100034365 303
105 3300006942 Ga0099824_1034498 Ga0099824_10344981 303
106 3300006944 Ga0099823_1000804 Ga0099823_100080414 303
107 3300009174 Ga0105241_10012640 Ga0105241_100126406 303
108 3300015261 Ga0182006_1000010 Ga0182006_1000010238 303
109 3300015262 Ga0182007_10000021 Ga0182007_1000002127 303
110 3300025208 Ga0209436_100042 Ga0209436_10004232 303
111 3300025284 Ga0209130_1000099 Ga0209130_100009968 303
112 3300025284 Ga0209130_1000227 Ga0209130_100022728 303
113 3300025298 Ga0209050_1000366 Ga0209050_100036619 303
114 3300025302 Ga0207426_1000062 Ga0207426_1000062233 303
115 3300025911 Ga0207654_10001203 Ga0207654_100012032 303
116 3300025929 Ga0207664_10251372 Ga0207664_102513722 303
117 3300026075 Ga0207708_10006583 Ga0207708_100065835 303
118 3300027296 Ga0209389_1000523 Ga0209389_10005239 303
119 3300031507 Ga0307509_10000904 Ga0307509_1000090446 303
120 3300031616 Ga0307508_10002035 Ga0307508_1000203521 303
121 3300031616 Ga0307508_10002958 Ga0307508_1000295817 303
122 3300033179 Ga0307507_10149860 Ga0307507_101498602 303
123 3300033180 Ga0307510_10002154 Ga0307510_1000215418 303
124 3300033180 Ga0307510_10003569 Ga0307510_100035694 303
125 3300042531 Ga0450918_003669 Ga0450918_003669_1786_2730 303
126 3300044706 Ga0466964_0000063 Ga0466964_0000063_2588_3511 303
127 3300046474 Ga0495605_0023388 Ga0495605_0023388_193_1119 303
128 3300046491 Ga0495584_0002120 Ga0495584_0002120_8026_8952 303
129 3300046492 Ga0495585_0001745 Ga0495585_0001745_6556_7482 303
130 3300046501 Ga0495607_0000962 Ga0495607_0000962_10012_10938 303
131 3300046513 Ga0495616_0000178 Ga0495616_0000178_26692_27618 303
132 3300046528 Ga0495642_0032495 Ga0495642_0032495_72_998 303
133 3300046538 Ga0495609_0000002 Ga0495609_0000002_524659_525585 303
134 3300046615 Ga0495656_0012079 Ga0495656_0012079_2222_3148 303
135 3300046665 Ga0495661_0000207 Ga0495661_0000207_40021_40947 303
136 3300046794 Ga0495589_0000009 Ga0495589_0000009_211271_212197 303
137 3300047320 Ga0495672_0000125 Ga0495672_0000125_18682_19605 303
138 3300047443 Ga0495687_000013 Ga0495687_000013_211271_212197 303
139 3300047445 Ga0495677_0000024 Ga0495677_0000024_42076_43002 303
140 3300048091 Ga0495626_0000151 Ga0495626_0000151_37662_38588 303
141 3300048920 Ga0496117_0000010 Ga0496117_0000010_441450_442373 303
142 3300048921 Ga0496118_0000009 Ga0496118_0000009_169582_170505 303
143 3300048924 Ga0496121_0002120 Ga0496121_0002120_20299_21222 303
144 3300048929 Ga0496126_0003931 Ga0496126_0003931_9005_9949 303
145 3300049568 Ga0501031_0069422 Ga0501031_0069422_61_978 303
146 3300049571 Ga0501034_0056451 Ga0501034_0056451_2428_3345 303
147 3300049571 Ga0501034_0072408 Ga0501034_0072408_1909_2853 303
148 3300049574 Ga0501038_0034733 Ga0501038_0034733_287_1204 303
149 3300049581 Ga0501047_0361779 Ga0501047_0361779_184_1122 303
150 3300049669 Ga0501235_000480 Ga0501235_000480_6044_6991 303
151 3300049742 Ga0501080_0083987 Ga0501080_0083987_89_1006 303
152 3300049744 Ga0501083_0071532 Ga0501083_0071532_904_1863 303
153 3300049823 Ga0501044_0041388 Ga0501044_0041388_3863_4780 303
154 3300053154 Ga0500619_000059 Ga0500619_000059_14924_15844 303
155 3300003316 rootH1_10111169 rootH1_101111693 304
156 3300005456 Ga0070678_100481365 Ga0070678_1004813651 304
157 3300005564 Ga0070664_100031485 Ga0070664_1000314852 304
158 3300009101 Ga0105247_10016891 Ga0105247_100168914 304
159 3300025900 Ga0207710_10038169 Ga0207710_100381692 304
160 3300025945 Ga0207679_10081479 Ga0207679_100814792 304
161 3300026121 Ga0207683_10242602 Ga0207683_102426022 304
162 3300048905 Ga0496102_0107934 Ga0496102_0107934_161_1090 304
163 3300048920 Ga0496117_0001566 Ga0496117_0001566_17808_18737 304
164 3300048921 Ga0496118_0001796 Ga0496118_0001796_17838_18767 304
165 3300048924 Ga0496121_0013266 Ga0496121_0013266_3201_4172 304
166 3300048927 Ga0496124_0001755 Ga0496124_0001755_15607_16536 304
167 3300048929 Ga0496126_0002289 Ga0496126_0002289_13280_14209 304
168 3300050509 nmdc:mga0qj67_97542_c1 nmdc:mga0qj67_97542_c1_867_1844 304
169 3300053130 Ga0500642_0057532 Ga0500642_0057532_720_1640 304
170 3300002067 JGI24735J21928_10004722 JGI24735J21928_100047223 305
171 3300002705 JGI25156J39149_1000313 JGI25156J39149_100031315 305
172 3300005339 Ga0070660_100000537 Ga0070660_1000005376 305
173 3300005366 Ga0070659_100002095 Ga0070659_10000209510 305
174 3300005455 Ga0070663_100000402 Ga0070663_1000004027 305
175 3300005563 Ga0068855_100003503 Ga0068855_10000350312 305
176 3300009093 Ga0105240_10024586 Ga0105240_100245863 305
177 3300009174 Ga0105241_10311899 Ga0105241_103118992 305
178 3300010375 Ga0105239_10008956 Ga0105239_100089567 305
179 3300010375 Ga0105239_10583832 Ga0105239_105838321 305
180 3300013100 Ga0157373_10081629 Ga0157373_100816291 305
181 3300013104 Ga0157370_10067268 Ga0157370_100672683 305
182 3300013105 Ga0157369_10142742 Ga0157369_101427422 305
183 3300013307 Ga0157372_10180400 Ga0157372_101804003 305
184 3300013307 Ga0157372_10330901 Ga0157372_103309012 305
185 3300014497 Ga0182008_10045715 Ga0182008_100457152 305
186 3300015261 Ga0182006_1027499 Ga0182006_10274993 305
187 3300015265 Ga0182005_1001431 Ga0182005_10014314 305
188 3300025228 Ga0209672_101482 Ga0209672_1014826 305
189 3300025256 Ga0209759_1000562 Ga0209759_100056220 305
190 3300025256 Ga0209759_1001398 Ga0209759_10013983 305
191 3300025904 Ga0207647_10011983 Ga0207647_100119835 305
192 3300025913 Ga0207695_10011856 Ga0207695_100118567 305
193 3300025919 Ga0207657_10001827 Ga0207657_1000182720 305
194 3300025920 Ga0207649_10424135 Ga0207649_104241351 305
195 3300025924 Ga0207694_10030597 Ga0207694_100305974 305
196 3300025932 Ga0207690_10000615 Ga0207690_1000061520 305
197 3300025949 Ga0207667_10003296 Ga0207667_1000329611 305
198 3300026067 Ga0207678_10006529 Ga0207678_100065294 305
199 3300047320 Ga0495672_0045600 Ga0495672_0045600_1362_2291 305
200 3300047472 Ga0495686_0166228 Ga0495686_0166228_329_1258 305
201 3300048904 Ga0496101_0034731 Ga0496101_0034731_460_1377 305
202 3300048919 Ga0496116_0015775 Ga0496116_0015775_4891_5808 305
203 3300048924 Ga0496121_0006329 Ga0496121_0006329_5554_6471 305
204 3300048925 Ga0496122_0062403 Ga0496122_0062403_640_1557 305
205 3300048926 Ga0496123_0053703 Ga0496123_0053703_814_1731 305
206 3300048928 Ga0496125_0007187 Ga0496125_0007187_6720_7637 305

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02779

Transket_pyr

Transketolase, pyrimidine binding domain

1

162

0.96

PF02780

Transketolase_C

Transketolase, C-terminal domain

177

295

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
6yak-assembly1.cif.gz_DDD split gene transketolase, active alpha2beta2 heterotetramer 0.9036 2 305
2o1s-assembly2.cif.gz_C 1-deoxy-d-xylulose 5-phosphate synthase (dxs) from escherichia coli 0.8995 2 302
6ouw-assembly1.cif.gz_A 1-deoxy-d-xylulose 5-phosphate synthase (dxps) from deinococcus radiodurans with enamine intermediate bound 0.8986 1 299
2o1x-assembly2.cif.gz_D 1-deoxy-d-xylulose 5-phosphate synthase (dxs) from deinococcus radiodurans 0.8983 1 300
6yak-assembly1.cif.gz_DDD split gene transketolase, active alpha2beta2 heterotetramer 0.898 2 305
ID Description Score Start End Superfamily
af_Q58092_3_181_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.8985 1 167 3.40.50.970
af_O50408_212_377_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.8936 1 155 3.40.50.970
2o1xD03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.884 175 300 3.40.50.920
af_I1M1A4_399_568_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.8773 2 163 3.40.50.970
af_D3ZHE7_301_494_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.8715 2 165 3.40.50.970
ID Description Score Start End GO Terms
AF-A0A2E5JMB7-F1-model_v4 Transketolase 0.951 1 300 GO:0003824
AF-A0A7Y3J060-F1-model_v4 Transketolase 0.9478 1 305 GO:0003824
AF-A0A2H0S3E3-F1-model_v4 Transketolase 0.9478 1 299 GO:0003824
AF-A0A1V5GZC3-F1-model_v4 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7) 0.9459 1 298 GO:0008661
AF-A0A7Y3J060-F1-model_v4 Transketolase 0.9448 1 305 GO:0003824

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pLDDT pTM Quality
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Predicted Structure (AlphaFold2)

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