F314532

General Info

Members Datasets Scaffolds Average Seq Length
205 152 410 452

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8004025490|8004027731
Length 523
Sequence SAKSLNRAVAAVLAAGAAGTAAVMGARALRAGADRVEPGAPAGEQSVIPPGDQFGTPAGERSAVPPGGRGPTASPGETGAEHATRAAARLAELIRFRTVFSPRRDEIELEEFTGFIAALERLYPAAHAALEREFVNGHALLYKWPGAGPGAAARAVVLMAHYDVVPVDARDNWTHPGFSGHRDAGYVWGRGALDDKGAVVVILEAVESLVGEGWEPRQDIYLSFGNNEETAGDSAVAAAALLAGRGVRPWMVLDEGGAVAENAFPGLRRPAAVIGVAEKGILDLELVARSAGGHASTPPRMGATARLARAIMALETHPFPQSMPGPVVEMLRRIGVHSGFGLRLVTSNMWAFKGLLTRVFDLLGDETRAMTRTTVAVTELEGSRGANVLAATARANANIRIAVGEDVAGAVERVRRTIDDPSIELRVHGAHEPSPVSPFNNEQFALLSRCVGVSHPGAVVTPYVQTGATDARHFTALCPAVYRFSPLLMDAGDRASIHGVNEKVRVSALGAGVVFYRELMQAL

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
5 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
9 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
10 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
13 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
14 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
17 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
20 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
21 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
22 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
23 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
26 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
27 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
28 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
29 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
30 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
31 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
32 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
33 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
34 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
37 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
39 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
40 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
41 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
42 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
43 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
44 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
45 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
46 3300015683 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_F04 Metagenome Rhizosphere
47 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
48 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
72 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
73 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
74 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
75 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
76 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
77 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
78 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
79 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
80 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
81 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
82 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
83 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
84 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
85 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
86 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
87 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
88 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
89 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
90 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
91 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
92 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
93 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
94 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
95 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
96 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
97 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
98 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
99 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
100 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
101 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
102 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
103 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
104 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
105 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
106 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
107 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
108 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
109 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
110 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
111 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
116 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
117 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
118 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
119 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
120 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
121 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
122 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
123 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
124 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
125 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
126 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
127 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
128 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
129 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
130 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
131 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
132 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
133 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
134 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
135 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
136 8004025490 Arthrobacter wenxiniae AETb3-4 Isolate Rhizosphere
137 2643221613 Oerskovia sp. Root22 Isolate Unclassified
138 2643221628 Variovorax sp. Root318D1 Isolate Unclassified
139 2643221641 Nocardioides sp. Root122 Isolate Unclassified
140 2643221721 Oerskovia sp. Root918 Isolate Unclassified
141 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
142 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
143 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
144 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
145 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
146 2885198086 Variovorax sp. 679 Isolate Unclassified
147 2935890801 Oerskovia enterophila 3230 Isolate Rhizosphere
148 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
149 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
150 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
151 8004021418 Arthrobacter sp. SDTb3-6 Isolate Rhizosphere
152 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 91.22
Metatranscriptomes 0.49
Isolates 8.29

Biome Distribution

Category Percentage (%)
Aerial Root 0.98
Bulb 0
Endosphere 10.73
Nodule 0.49
Rhizoplane 13.17
Rhizosphere 67.8
Stem 0
Stem Tuber 0
Unclassified 3.9

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100007148 3300005329 Bacteria 9411
2 Ga0070660_100001755 3300005339 Bacteria 14876
3 Ga0070660_100034757 3300005339 Bacteria 3811
4 Ga0070689_100008214 3300005340 Bacteria 7338
5 Ga0070669_100027838 3300005353 Bacteria 4068
6 Ga0070675_100028257 3300005354 Bacteria 4514
7 Ga0070671_100091057 3300005355 Bacteria 2554
8 Ga0070674_100090258 3300005356 Bacteria 2210
9 Ga0070701_10001116 3300005438 Bacteria 9803
10 Ga0070705_100002657 3300005440 Bacteria 8947
11 Ga0070700_100001325 3300005441 Bacteria 12280
12 Ga0070678_100025293 3300005456 Bacteria 3991
13 Ga0070678_100050444 3300005456 Bacteria 3010
14 Ga0068867_100003701 3300005459 Bacteria 10757
15 Ga0070706_100163285 3300005467 Bacteria 2080
16 Ga0070699_100027784 3300005518 Bacteria 4879
17 Ga0070699_100100790 3300005518 Bacteria 2531
18 Ga0070679_100236833 3300005530 Bacteria 1784
19 Ga0070686_100001098 3300005544 Bacteria 15588
20 Ga0070696_100017690 3300005546 Bacteria 4814
21 Ga0070696_100044401 3300005546 Bacteria 3078
22 Ga0070665_100000566 3300005548 Bacteria 51646
23 Ga0070704_100004436 3300005549 Bacteria 8102
24 Ga0070704_100016426 3300005549 Bacteria 4676
25 Ga0070664_100054330 3300005564 Bacteria 3398
26 Ga0070702_100008183 3300005615 Bacteria 5052
27 Ga0068852_100255660 3300005616 Bacteria 1680
28 Ga0068866_10000607 3300005718 Bacteria 16367
29 Ga0068860_100072380 3300005843 Bacteria 3276
30 Ga0068860_100213070 3300005843 Bacteria 1874
31 Ga0081540_1002547 3300005983 Bacteria 14787
32 Ga0081539_10014500 3300005985 Bacteria 5824
33 Ga0075365_10070709 3300006038 Bacteria 2348
34 Ga0075365_10088608 3300006038 Bacteria 2106
35 Ga0075365_10172918 3300006038 Bacteria 1508
36 Ga0075368_10001178 3300006042 Bacteria 8243
37 Ga0075363_100000303 3300006048 Bacteria 14439
38 Ga0075363_100003764 3300006048 Bacteria 6534
39 Ga0075363_100022453 3300006048 Bacteria 3190
40 Ga0075364_10132334 3300006051 Bacteria 1675
41 Ga0075431_100053515 3300006847 Bacteria 4162
42 Ga0075433_10005029 3300006852 Bacteria 10360
43 Ga0068865_100001044 3300006881 Bacteria 15911
44 Ga0105251_10009454 3300009011 Bacteria 5755
45 Ga0105245_10003703 3300009098 Bacteria 13639
46 Ga0105245_10110949 3300009098 Bacteria 2550
47 Ga0105247_10000495 3300009101 Bacteria 32681
48 Ga0114129_10097536 3300009147 Unclassified 4069
49 Ga0114129_10391389 3300009147 Bacteria 1833
50 Ga0105243_10013495 3300009148 Bacteria 6179
51 Ga0157373_10038806 3300013100 Bacteria 3411
52 Ga0157370_10063749 3300013104 Bacteria 3490
53 Ga0157378_10003589 3300013297 Bacteria 13732
54 Ga0157375_10152357 3300013308 Bacteria 2448
55 Ga0157380_10025126 3300014326 Bacteria 4515
56 Ga0157380_10153652 3300014326 Bacteria 1993
57 Ga0182008_10049227 3300014497 Bacteria 2092
58 Ga0157379_10036750 3300014968 Bacteria 4367
59 Ga0183362_10001 3300015683 Bacteria 2046624
60 Ga0206353_11346908 3300020082 Bacteria 2312
61 Ga0209148_1006992 3300025254 Bacteria 2387
62 Ga0207710_10002996 3300025900 Bacteria 7626
63 Ga0207647_10021465 3300025904 Bacteria 4311
64 Ga0207645_10006687 3300025907 Bacteria 8236
65 Ga0207657_10050784 3300025919 Bacteria 3607
66 Ga0207652_10303187 3300025921 Bacteria 1442
67 Ga0207646_10186799 3300025922 Unclassified 1872
68 Ga0207681_10048523 3300025923 Bacteria 2866
69 Ga0207659_10129255 3300025926 Bacteria 1947
70 Ga0207690_10026993 3300025932 Bacteria 3624
71 Ga0207686_10001495 3300025934 Bacteria 13176
72 Ga0207704_10000765 3300025938 Bacteria 14166
73 Ga0207691_10001302 3300025940 Bacteria 24902
74 Ga0207689_10021131 3300025942 Bacteria 5471
75 Ga0207679_10038149 3300025945 Bacteria 3421
76 Ga0207658_10049410 3300025986 Bacteria 3091
77 Ga0207678_10100406 3300026067 Bacteria 2472
78 Ga0207708_10003374 3300026075 Bacteria 11775
79 Ga0207708_10123904 3300026075 Bacteria 2016
80 Ga0207648_10004074 3300026089 Bacteria 15151
81 Ga0207683_10002085 3300026121 Bacteria 17641
82 Ga0207683_10196651 3300026121 Bacteria 1832
83 Ga0207698_10171615 3300026142 Bacteria 1910
84 Ga0268266_10000596 3300028379 Bacteria 49462
85 Ga0268264_10210576 3300028381 Bacteria 1784
86 Ga0265318_10016291 3300028577 Unclassified 3074
87 Ga0316182_1242725 3300030745 Bacteria 5188
88 Ga0265330_10006377 3300031235 Bacteria 5829
89 Ga0265320_10050524 3300031240 Unclassified 2020
90 Ga0265316_10063051 3300031344 Unclassified 2875
91 Ga0265342_10001579 3300031712 Bacteria 21014
92 Ga0265342_10027716 3300031712 Unclassified 3535
93 Ga0316576_10078711 3300031727 Bacteria 2443
94 Ga0307409_100008543 3300031995 Bacteria 6226
95 Ga0436364_1269294 3300037853 Bacteria 2575
96 Ga0451793_1311604 3300041452 Unclassified 2968
97 Ga0451577_0200857 3300042876 Unclassified 1800
98 Ga0466972_0010743 3300044658 Bacteria 4596
99 Ga0466972_0036193 3300044658 Bacteria 2416
100 Ga0466961_0011871 3300044693 Bacteria 5568
101 Ga0466970_0002698 3300044765 Bacteria 8574
102 Ga0466957_0032519 3300044842 Bacteria 3124
103 Ga0466960_0009434 3300044901 Bacteria 4023
104 Ga0466960_0080376 3300044901 Bacteria 1641
105 Ga0466967_0064891 3300045976 Bacteria 3248
106 Ga0466967_0096410 3300045976 Bacteria 2698
107 Ga0466967_0187553 3300045976 Bacteria 1953
108 Ga0495664_0034726 3300046477 Bacteria 2967
109 Ga0495665_0002513 3300046531 Bacteria 9906
110 Ga0495586_0052662 3300046535 Bacteria 2203
111 Ga0495656_0000051 3300046615 Bacteria 55112
112 Ga0495600_0003407 3300046809 Bacteria 9357
113 Ga0495680_0171401 3300047322 Bacteria 1571
114 Ga0496100_0037871 3300048903 Bacteria 3052
115 Ga0496102_0030121 3300048905 Bacteria 4857
116 Ga0496103_0009857 3300048906 Bacteria 5654
117 Ga0496103_0103054 3300048906 Bacteria 1807
118 Ga0496105_0006904 3300048908 Bacteria 8740
119 Ga0496105_0073101 3300048908 Bacteria 2833
120 Ga0496106_0011775 3300048909 Bacteria 6456
121 Ga0496107_0006672 3300048910 Bacteria 7945
122 Ga0496107_0017742 3300048910 Bacteria 5008
123 Ga0496107_0041252 3300048910 Bacteria 3314
124 Ga0496107_0065774 3300048910 Bacteria 2628
125 Ga0496108_0209929 3300048911 Bacteria 1690
126 Ga0496108_0214565 3300048911 Bacteria 1671
127 Ga0496108_0225560 3300048911 Bacteria 1628
128 Ga0496109_0013093 3300048912 Bacteria 7176
129 Ga0496109_0472068 3300048912 Bacteria 1185
130 Ga0496110_0046523 3300048913 Bacteria 3796
131 Ga0496111_0045660 3300048914 Bacteria 3152
132 Ga0496113_0069111 3300048916 Bacteria 2682
133 Ga0496113_0164020 3300048916 Bacteria 1758
134 Ga0496114_0002476 3300048917 Bacteria 14099
135 Ga0496114_0034496 3300048917 Bacteria 4175
136 Ga0496114_0110960 3300048917 Bacteria 2350
137 Ga0496114_0200544 3300048917 Bacteria 1747
138 Ga0496115_0005309 3300048918 Bacteria 9368
139 Ga0496115_0179350 3300048918 Bacteria 1751
140 Ga0496119_0016886 3300048922 Bacteria 5523
141 Ga0496119_0115245 3300048922 Bacteria 1485
142 Ga0496122_0000907 3300048925 Bacteria 54584
143 Ga0496123_0002767 3300048926 Bacteria 20958
144 Ga0496126_0002907 3300048929 Bacteria 22316
145 Ga0496126_0074606 3300048929 Bacteria 3012
146 Ga0501034_0002647 3300049571 Bacteria 21208
147 Ga0501034_0007396 3300049571 Bacteria 11694
148 Ga0501034_0016367 3300049571 Bacteria 7612
149 Ga0501034_0048159 3300049571 Bacteria 4302
150 Ga0501043_0002470 3300049579 Bacteria 15640
151 Ga0501047_0023708 3300049581 Bacteria 5892
152 Ga0501047_0025798 3300049581 Bacteria 5652
153 Ga0501048_0142789 3300049582 Bacteria 1693
154 Ga0501067_0001913 3300049583 Bacteria 11455
155 Ga0501068_0010698 3300049584 Bacteria 5159
156 Ga0501068_0044219 3300049584 Bacteria 2681
157 Ga0501069_0061815 3300049585 Bacteria 2092
158 Ga0501070_0000855 3300049586 Bacteria 27653
159 Ga0501070_0007648 3300049586 Bacteria 9175
160 Ga0501070_0027937 3300049586 Bacteria 4733
161 Ga0501070_0125012 3300049586 Bacteria 2126
162 Ga0501071_0000066 3300049587 Bacteria 37099
163 Ga0501072_0000503 3300049588 Bacteria 28131
164 Ga0501074_0039553 3300049590 Bacteria 3415
165 Ga0501080_0000505 3300049742 Bacteria 30637
166 Ga0501080_0006733 3300049742 Bacteria 10349
167 Ga0501083_0002016 3300049744 Bacteria 13977
168 Ga0501083_0115226 3300049744 Bacteria 1765
169 nmdc:mga0yw44_125109_c1 3300050492 Bacteria 1659
170 nmdc:mga0yw44_64299_c1 3300050492 Bacteria 2258
171 nmdc:mga06z11_9716_c1 3300050494 Bacteria 4064
172 nmdc:mga05p37_45921_c1 3300050507 Bacteria 5372
173 nmdc:mga05p37_5192_c1 3300050507 Bacteria 15283
174 nmdc:mga08x19_56473_c1 3300050514 Bacteria 2534
175 nmdc:mga0a205_22090_c1 3300050515 Bacteria 6022
176 Ga0495619_0042625 3300053085 Bacteria 2973
177 Ga0500644_0000056 3300053088 Bacteria 67323
178 Ga0500556_0000380 3300053104 Bacteria 32387
179 Ga0500593_000187 3300053117 Bacteria 25145
180 Ga0500559_0003454 3300053136 Bacteria 7762
181 Ga0500559_0012175 3300053136 Bacteria 3661
182 Ga0500573_0000787 3300053140 Bacteria 14255
183 Ga0500573_0003300 3300053140 Bacteria 8328
184 Ga0500573_0005714 3300053140 Bacteria 6670
185 Ga0500573_0012451 3300053140 Bacteria 4777
186 Ga0500573_0022315 3300053140 Bacteria 3632
187 Ga0501084_0039576 3300054114 Bacteria 3943
188 Ga0501084_0061237 3300054114 Bacteria 3151
189 8004027731 8004025490 Bacteria 4327753
190 2644082535 2643221613 Bacteria 4622396
191 2644163264 2643221628 Bacteria 5745828
192 2644228260 2643221641 Bacteria 4490190
193 2644665394 2643221721 Bacteria 4486924
194 2753268821 2751185782 Bacteria 11227053
195 2852645138 2852643534 Bacteria 3013378
196 2852678280 2852677369 Bacteria 3768884
197 2857735317 2857733635 Bacteria 3532004
198 2870623112 2870622029 Bacteria 3643329
199 2885200261 2885198086 Bacteria 7212419
200 2935892077 2935890801 Bacteria 4593001
201 2939657515 2939657138 Bacteria 3740283
202 2984578658 2984576629 Bacteria 4248407
203 2990259464 2990256926 Bacteria 4252839
204 8004021893 8004021418 Bacteria 4313954
205 8054612241 8054609563 Bacteria 5170090
206 Ga0070683_100007148
207 Ga0070660_100001755
208 Ga0070660_100034757
209 Ga0070689_100008214
210 Ga0070669_100027838
211 Ga0070675_100028257
212 Ga0070671_100091057
213 Ga0070674_100090258
214 Ga0070701_10001116
215 Ga0070705_100002657
216 Ga0070700_100001325
217 Ga0070678_100025293
218 Ga0070678_100050444
219 Ga0068867_100003701
220 Ga0070706_100163285
221 Ga0070699_100027784
222 Ga0070699_100100790
223 Ga0070679_100236833
224 Ga0070686_100001098
225 Ga0070696_100017690
226 Ga0070696_100044401
227 Ga0070665_100000566
228 Ga0070704_100004436
229 Ga0070704_100016426
230 Ga0070664_100054330
231 Ga0070702_100008183
232 Ga0068852_100255660
233 Ga0068866_10000607
234 Ga0068860_100072380
235 Ga0068860_100213070
236 Ga0081540_1002547
237 Ga0081539_10014500
238 Ga0075365_10070709
239 Ga0075365_10088608
240 Ga0075365_10172918
241 Ga0075368_10001178
242 Ga0075363_100000303
243 Ga0075363_100003764
244 Ga0075363_100022453
245 Ga0075364_10132334
246 Ga0075431_100053515
247 Ga0075433_10005029
248 Ga0068865_100001044
249 Ga0105251_10009454
250 Ga0105245_10003703
251 Ga0105245_10110949
252 Ga0105247_10000495
253 Ga0114129_10097536
254 Ga0114129_10391389
255 Ga0105243_10013495
256 Ga0157373_10038806
257 Ga0157370_10063749
258 Ga0157378_10003589
259 Ga0157375_10152357
260 Ga0157380_10025126
261 Ga0157380_10153652
262 Ga0182008_10049227
263 Ga0157379_10036750
264 Ga0183362_10001
265 Ga0206353_11346908
266 Ga0209148_1006992
267 Ga0207710_10002996
268 Ga0207647_10021465
269 Ga0207645_10006687
270 Ga0207657_10050784
271 Ga0207652_10303187
272 Ga0207646_10186799
273 Ga0207681_10048523
274 Ga0207659_10129255
275 Ga0207690_10026993
276 Ga0207686_10001495
277 Ga0207704_10000765
278 Ga0207691_10001302
279 Ga0207689_10021131
280 Ga0207679_10038149
281 Ga0207658_10049410
282 Ga0207678_10100406
283 Ga0207708_10003374
284 Ga0207708_10123904
285 Ga0207648_10004074
286 Ga0207683_10002085
287 Ga0207683_10196651
288 Ga0207698_10171615
289 Ga0268266_10000596
290 Ga0268264_10210576
291 Ga0265318_10016291
292 Ga0316182_1242725
293 Ga0265330_10006377
294 Ga0265320_10050524
295 Ga0265316_10063051
296 Ga0265342_10001579
297 Ga0265342_10027716
298 Ga0316576_10078711
299 Ga0307409_100008543
300 Ga0436364_1269294
301 Ga0451793_1311604
302 Ga0451577_0200857
303 Ga0466972_0010743
304 Ga0466972_0036193
305 Ga0466961_0011871
306 Ga0466970_0002698
307 Ga0466957_0032519
308 Ga0466960_0009434
309 Ga0466960_0080376
310 Ga0466967_0064891
311 Ga0466967_0096410
312 Ga0466967_0187553
313 Ga0495664_0034726
314 Ga0495665_0002513
315 Ga0495586_0052662
316 Ga0495656_0000051
317 Ga0495600_0003407
318 Ga0495680_0171401
319 Ga0496100_0037871
320 Ga0496102_0030121
321 Ga0496103_0009857
322 Ga0496103_0103054
323 Ga0496105_0006904
324 Ga0496105_0073101
325 Ga0496106_0011775
326 Ga0496107_0006672
327 Ga0496107_0017742
328 Ga0496107_0041252
329 Ga0496107_0065774
330 Ga0496108_0209929
331 Ga0496108_0214565
332 Ga0496108_0225560
333 Ga0496109_0013093
334 Ga0496109_0472068
335 Ga0496110_0046523
336 Ga0496111_0045660
337 Ga0496113_0069111
338 Ga0496113_0164020
339 Ga0496114_0002476
340 Ga0496114_0034496
341 Ga0496114_0110960
342 Ga0496114_0200544
343 Ga0496115_0005309
344 Ga0496115_0179350
345 Ga0496119_0016886
346 Ga0496119_0115245
347 Ga0496122_0000907
348 Ga0496123_0002767
349 Ga0496126_0002907
350 Ga0496126_0074606
351 Ga0501034_0002647
352 Ga0501034_0007396
353 Ga0501034_0016367
354 Ga0501034_0048159
355 Ga0501043_0002470
356 Ga0501047_0023708
357 Ga0501047_0025798
358 Ga0501048_0142789
359 Ga0501067_0001913
360 Ga0501068_0010698
361 Ga0501068_0044219
362 Ga0501069_0061815
363 Ga0501070_0000855
364 Ga0501070_0007648
365 Ga0501070_0027937
366 Ga0501070_0125012
367 Ga0501071_0000066
368 Ga0501072_0000503
369 Ga0501074_0039553
370 Ga0501080_0000505
371 Ga0501080_0006733
372 Ga0501083_0002016
373 Ga0501083_0115226
374 nmdc:mga0yw44_125109_c1
375 nmdc:mga0yw44_64299_c1
376 nmdc:mga06z11_9716_c1
377 nmdc:mga05p37_45921_c1
378 nmdc:mga05p37_5192_c1
379 nmdc:mga08x19_56473_c1
380 nmdc:mga0a205_22090_c1
381 Ga0495619_0042625
382 Ga0500644_0000056
383 Ga0500556_0000380
384 Ga0500593_000187
385 Ga0500559_0003454
386 Ga0500559_0012175
387 Ga0500573_0000787
388 Ga0500573_0003300
389 Ga0500573_0005714
390 Ga0500573_0012451
391 Ga0500573_0022315
392 Ga0501084_0039576
393 Ga0501084_0061237
394 8004027731
395 2644082535
396 2644163264
397 2644228260
398 2644665394
399 2753268821
400 2852645138
401 2852678280
402 2857735317
403 2870623112
404 2885200261
405 2935892077
406 2939657515
407 2984578658
408 2990259464
409 8004021893
410 8054612241

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07687

M20_dimer

Peptidase dimerisation domain

276

425

0.95

PF01546

Peptidase_M20

Peptidase family M20/M25/M40

157

522

0.83

PF04389

Peptidase_M28

Peptidase family M28

140

251

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
5vo3-assembly1.cif.gz_A-2 crystal structure of dape in complex with the products (succinic acid and diaminopimelic acid) 0.8711 4 439
7t1q-assembly1.cif.gz_B crystal structure of the succinyl-diaminopimelate desuccinylase (dape) from acinetobacter baumannii in complex with succinic acid 0.8587 3 438
5vo3-assembly1.cif.gz_A-2 crystal structure of dape in complex with the products (succinic acid and diaminopimelic acid) 0.8539 4 439
7t1q-assembly1.cif.gz_B crystal structure of the succinyl-diaminopimelate desuccinylase (dape) from acinetobacter baumannii in complex with succinic acid 0.8501 3 438
5xoy-assembly1.cif.gz_A-2 crystal structure of lysk from thermus thermophilus in complex with lysine 0.8265 5 436
ID Description Score Start End Superfamily
af_F1M0Q9_12_214_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.9542 4 188 3.40.630.10
af_Q55FR8_72_254_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.9411 5 172 3.40.630.10
af_A0A1D8PLD9_97_300_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.927 4 172 3.40.630.10
af_Q55DL1_30_219_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.9268 5 182 3.40.630.10
af_A0A1D8PLQ3_71_312_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.9153 4 188 3.40.630.10
ID Description Score Start End GO Terms
AF-A0A397LJL6-F1-model_v4 deleted 0.967 4 440
AF-A0A7C4Z031-F1-model_v4 M20/M25/M40 family metallo-hydrolase 0.9657 1 139 GO:0006508
GO:0008233
AF-A0A353RQJ8-F1-model_v4 Peptidase M20 0.9637 5 162 GO:0006508
GO:0008233
AF-A0A397LJL6-F1-model_v4 deleted 0.9584 4 440
AF-A0A7C7Y242-F1-model_v4 M20/M25/M40 family metallo-hydrolase 0.9564 4 436 GO:0006508
GO:0008233

Map