F314523

General Info

Members Datasets Scaffolds Average Seq Length
205 159 410 370

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2980125574|2980127385
Length 441
Sequence SQGGISFRVLNEVSMQRRNGSALLEIIDFEAIRNILYGADNELLCLNLFTLIGKSFIVDLCESNDKGEIILTATKGLEGIVATTSSISSIIDGVLTYRGINIDDLAENATFEEVVYLLWYGKLPNRSELSGLIQELNSNAAVPAEVLNQIKLYPKDVNTMAALRTAVSSLALYDPEAGDMTPESNLRKAIKLQAQLPTIVAAFDRIRKGLEPIAPKADAGSISENFLYMLTGKNPEKIAIEALDKALVLHADHELNASTFAARVTVATLSDIYSGVTSAIGALKGPLHGGANEAVMAMLEEIGTAANVKSYITEKLENKQKIMGFGHRVYKNGDPRAKHLQKMSQELGKLTGNMNWYDMSIQIEELVTGQKGLKPNVDFYSASVYTSLEIPRDLFTPIFAISRTSGWTAHILEQYENNRLIRPRAEYTGPSHQAYVPIEKR

Samples

Sample ID Description Type Environment
1 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
2 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
6 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
7 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
8 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
9 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
10 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
11 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
12 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
13 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
14 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
15 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
16 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
17 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
18 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
19 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
20 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
21 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
22 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
23 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
24 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
25 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
26 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
27 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
28 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
29 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
35 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
36 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
37 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
38 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
39 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
40 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
41 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
42 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
43 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
44 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
45 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
46 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
47 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
48 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
49 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
50 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
51 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
52 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
53 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
54 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
55 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
56 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
57 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
58 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
59 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
60 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
61 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
62 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
63 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
64 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
65 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
66 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
67 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
68 3300049127 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
69 3300049528 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
70 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
75 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
76 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
77 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
78 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
79 3300059491 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 12R_AW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
80 3300059505 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 24R_SD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
81 3300059640 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 8R_CD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
82 3300059643 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 13R_AD_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
83 3300059647 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 43R_SW_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
84 2980125574 Paenibacillus sp. tmac-D7 Isolate Unclassified
85 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
86 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
87 2563366752 Paenibacillus pini JCM 16418 Isolate Rhizosphere
88 2571042143 Paenibacillus graminis RSA19 Isolate Unclassified
89 2571042588 Paenibacillus zanthoxyli JH29 Isolate Unclassified
90 2576861424 Paenibacillus sabinae T27 Isolate Rhizosphere
91 2579778775 Paenibacillus durus P3L-5 Isolate Unclassified
92 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
93 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
94 2600255286 Paenibacillus sp. NFR01 Isolate Rhizoplane
95 2619619294 Paenibacillus durus ATCC 35681 Isolate Unclassified
96 2643221543 Paenibacillus sp. Root52 Isolate Unclassified
97 2643221676 Paenibacillus sp. Root444D2 Isolate Unclassified
98 2671180694 Paenibacillus sp. A3 Isolate Unclassified
99 2721755693 Paenibacillus polymyxa YC0573 Isolate Rhizosphere
100 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
101 2728369359 Paenibacillus polymyxa YC0136 Isolate Rhizosphere
102 2738543010 Bacillus sp. YR335 Isolate Unclassified
103 2751185905 Paenibacillus kribbensis 6hRe76 Isolate Unclassified
104 2791355222 Paenibacillus oryzae 1DrF-4 Isolate Unclassified
105 2802428803 Paenibacillus peoriae NMA1017 Isolate Rhizosphere
106 2818991459 Paenibacillus sp. 597 Isolate Unclassified
107 2821111986 Paenibacillus illinoisensis 582 Isolate Unclassified
108 2831905167 Ammoniphilus oxalaticus RAOx-1 Isolate Rhizosphere
109 2852673933 Sporosarcina sp. JAI121 Isolate Rhizosphere
110 2857453340 Paenibacillus sp. R-74130 Isolate Unclassified
111 2857472729 Cohnella sp. R-74144 Isolate Unclassified
112 2864733723 Paenibacillus sp. JGP012 Isolate Rhizosphere
113 2864997549 Paenibacillus sp. R-72005 Isolate Unclassified
114 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
115 2881636855 Paenibacillus sp. 7197 Isolate Rhizosphere
116 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
117 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
118 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
119 2889276214 Paenibacillus sp. PvR133 Isolate Rhizosphere
120 2889295896 Paenibacillus sp. PvR098 Isolate Rhizosphere
121 2898907183 Brevibacillus sp. SYP-B805 Isolate Rhizosphere
122 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
123 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
124 2904595352 Paenibacillus sp. 1182 Isolate Unclassified
125 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
126 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
127 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
128 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
129 2928510474 Sporosarcina psychrophila 1288 Isolate Rhizosphere
130 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
131 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
132 2936361878 Neobacillus endophyticus BRMEA1 Isolate Unclassified
133 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
134 2939679117 Paenibacillus sp. 4624 Isolate Rhizosphere
135 2939702853 Paenibacillus sp. PvR008 Isolate Rhizosphere
136 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
137 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
138 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
139 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
140 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
141 2981284811 Paenibacillus sp. PvR052 Isolate Rhizosphere
142 2981289755 Paenibacillus sp. PvR148 Isolate Rhizosphere
143 2981980479 Paenibacillus sp. PvR018 Isolate Rhizosphere
144 2981985349 Paenibacillus sp. PvR053 Isolate Rhizosphere
145 2984527788 Paenibacillus sp. SORGH_AS306 Isolate Aerial Root
146 2984532647 Paenibacillus sp. SORGH_AS338 Isolate Aerial Root
147 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
148 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
149 2996706504 Paenibacillus sp. OT2-17 Isolate Rhizosphere
150 3006969106 Bacillus sp. FJAT-50079 Isolate Rhizosphere
151 3006973921 Bacillus sp. FJAT-49736 Isolate Rhizosphere
152 648028048 Paenibacillus polymyxa E681 Isolate Rhizosphere
153 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
154 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
155 8055632911 Paenibacillus radicibacter N1-5-1-14 Isolate Unclassified
156 8056533031 Paenibacillus qinlingensis TEGT-2 Isolate Unclassified
157 8057632132 Cytobacillus kochii RZ2 Isolate Rhizosphere
158 8057733483 Paenibacillus apiarius MW-14 Isolate Rhizosphere
159 8057977335 Paenibacillus oenotherae DT7-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 59.02
Metatranscriptomes 3.41
Isolates 37.56

Biome Distribution

Category Percentage (%)
Aerial Root 0.98
Bulb 0
Endosphere 8.78
Nodule 0.49
Rhizoplane 1.46
Rhizosphere 58.54
Stem 0
Stem Tuber 0
Unclassified 0.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10003858 3300003187 Bacteria 8111
2 Ga0055541_1001471 3300003841 Bacteria 5102
3 Ga0055541_1002208 3300003841 Bacteria 3955
4 Ga0070670_100037246 3300005331 Bacteria 4185
5 Ga0068869_100013001 3300005334 Bacteria 5522
6 Ga0070708_100004096 3300005445 Bacteria 11443
7 Ga0070708_100021663 3300005445 Bacteria 5439
8 Ga0070708_100174085 3300005445 Bacteria 2010
9 Ga0070662_100002956 3300005457 Bacteria 10559
10 Ga0070706_100036131 3300005467 Bacteria 4562
11 Ga0070707_100060227 3300005468 Bacteria 3641
12 Ga0070707_100172958 3300005468 Bacteria 2105
13 Ga0070707_100230023 3300005468 Bacteria 1805
14 Ga0070698_100000906 3300005471 Bacteria 32554
15 Ga0070698_100054475 3300005471 Bacteria 4060
16 Ga0070698_100103965 3300005471 Bacteria 2810
17 Ga0070697_100001657 3300005536 Bacteria 16973
18 Ga0070697_100068224 3300005536 Bacteria 2911
19 Ga0070686_100000239 3300005544 Bacteria 37323
20 Ga0070693_100093775 3300005547 Bacteria 1815
21 Ga0068858_100329884 3300005842 Bacteria 1459
22 Ga0075367_10032730 3300006178 Bacteria 2993
23 Ga0105244_10024550 3300009036 Bacteria 3288
24 Ga0105244_10051922 3300009036 Bacteria 2089
25 Ga0111539_10010674 3300009094 Bacteria 11567
26 Ga0105238_10000409 3300009551 Bacteria 45597
27 Ga0105246_10024120 3300011119 Bacteria 3947
28 Ga0157372_10063960 3300013307 Bacteria 4127
29 Ga0213876_10025308 3300021384 Bacteria 3132
30 Ga0209784_100134 3300025224 Bacteria 71273
31 Ga0209784_102198 3300025224 Bacteria 2078
32 Ga0209566_100151 3300025225 Bacteria 79302
33 Ga0209566_100234 3300025225 Bacteria 53750
34 Ga0209566_100259 3300025225 Bacteria 50462
35 Ga0209147_106718 3300025229 Bacteria 1569
36 Ga0209437_100357 3300025233 Bacteria 51450
37 Ga0209233_1001398 3300025261 Bacteria 9546
38 Ga0209675_1004359 3300025291 Bacteria 6321
39 Ga0209676_1018018 3300025292 Bacteria 2477
40 Ga0209025_1011422 3300025294 Bacteria 5851
41 Ga0207684_10093549 3300025910 Bacteria 2563
42 Ga0207646_10064704 3300025922 Bacteria 3264
43 Ga0207646_10103920 3300025922 Bacteria 2548
44 Ga0207694_10000228 3300025924 Bacteria 54410
45 Ga0207706_10001389 3300025933 Bacteria 24171
46 Ga0207703_10279719 3300026035 Bacteria 1515
47 Ga0265336_10038876 3300028666 Bacteria 1459
48 Ga0265342_10043974 3300031712 Bacteria 2694
49 Ga0373959_0000034 3300034820 Bacteria 29870
50 Ga0373955_0037673 3300035172 Bacteria 2572
51 Ga0395899_0022286 3300037312 Bacteria 4804
52 Ga0395899_0039051 3300037312 Bacteria 3554
53 Ga0395898_0118533 3300037466 Bacteria 2536
54 Ga0395901_0145568 3300038443 Bacteria 2490
55 Ga0436365_0547422 3300039437 Bacteria 6297
56 Ga0439439_0000832 3300041406 Bacteria 5634
57 Ga0439433_0024730 3300041999 Bacteria 1354
58 Ga0439449_0000041 3300042007 Bacteria 39285
59 Ga0439462_0004255 3300042015 Bacteria 3483
60 Ga0466966_0008093 3300044684 Bacteria 6969
61 Ga0466966_0010376 3300044684 Bacteria 6185
62 Ga0466966_0143556 3300044684 Bacteria 1458
63 Ga0466961_0071893 3300044693 Bacteria 2195
64 Ga0466961_0105252 3300044693 Bacteria 1776
65 Ga0466961_0112142 3300044693 Bacteria 1715
66 Ga0466957_0009626 3300044842 Bacteria 5519
67 Ga0466959_0009509 3300045049 Bacteria 6915
68 Ga0466959_0011696 3300045049 Bacteria 6312
69 Ga0466959_0044034 3300045049 Bacteria 3289
70 Ga0466959_0144411 3300045049 Bacteria 1680
71 Ga0466958_0001406 3300045836 Bacteria 11384
72 Ga0466958_0119070 3300045836 Bacteria 1652
73 Ga0495580_0014267 3300046472 Bacteria 6031
74 Ga0495628_0013681 3300046516 Bacteria 6818
75 Ga0495643_0000286 3300046522 Bacteria 72166
76 Ga0495660_0009766 3300046810 Bacteria 5592
77 Ga0495626_0013192 3300048091 Bacteria 4304
78 Ga0496112_0115177 3300048915 Unclassified 2659
79 Ga0496112_0252656 3300048915 Bacteria 1714
80 Ga0496116_0009307 3300048919 Bacteria 8393
81 Ga0496117_0019702 3300048920 Bacteria 5529
82 Ga0496118_0005035 3300048921 Bacteria 15244
83 Ga0496119_0001614 3300048922 Bacteria 26712
84 Ga0496120_0000791 3300048923 Bacteria 45642
85 Ga0496120_0024282 3300048923 Bacteria 3782
86 Ga0496121_0117424 3300048924 Bacteria 2016
87 Ga0496121_0178437 3300048924 Bacteria 1535
88 Ga0496121_0229958 3300048924 Bacteria 1299
89 Ga0496122_0009535 3300048925 Bacteria 10201
90 Ga0496122_0024979 3300048925 Bacteria 5211
91 Ga0496122_0027271 3300048925 Bacteria 4888
92 Ga0496122_0079266 3300048925 Bacteria 2296
93 Ga0496123_0005128 3300048926 Bacteria 13364
94 Ga0496123_0022768 3300048926 Bacteria 4817
95 Ga0496123_0071676 3300048926 Bacteria 2160
96 Ga0496124_0000478 3300048927 Bacteria 68902
97 Ga0496124_0000512 3300048927 Bacteria 66825
98 Ga0496124_0062159 3300048927 Bacteria 3126
99 Ga0496124_0099576 3300048927 Bacteria 2357
100 Ga0496125_0000535 3300048928 Bacteria 65395
101 Ga0496125_0000559 3300048928 Bacteria 64131
102 Ga0496125_0011757 3300048928 Bacteria 8725
103 Ga0496125_0093866 3300048928 Bacteria 2238
104 Ga0496125_0290561 3300048928 Bacteria 1007
105 Ga0496126_0000100 3300048929 Bacteria 203706
106 Ga0496126_0002544 3300048929 Bacteria 24393
107 Ga0496126_0002731 3300048929 Bacteria 23325
108 Ga0496126_0022660 3300048929 Bacteria 6104
109 Ga0501306_000812 3300049127 Bacteria 2637
110 Ga0501312_000670 3300049528 Bacteria 2917
111 Ga0501033_0015330 3300049570 Bacteria 5814
112 Ga0501033_0189228 3300049570 Bacteria 1473
113 Ga0501034_0037328 3300049571 Bacteria 4919
114 Ga0501043_0145529 3300049579 Bacteria 1856
115 Ga0501047_0000557 3300049581 Bacteria 40046
116 Ga0501047_0093128 3300049581 Bacteria 2892
117 Ga0501044_0003366 3300049823 Bacteria 18028
118 Ga0501044_0006399 3300049823 Bacteria 13017
119 Ga0501044_0030203 3300049823 Bacteria 5712
120 nmdc:mga06z11_50404_c1 3300050494 Bacteria 2128
121 nmdc:mga08y16_32787_c1 3300050511 Bacteria 5461
122 Ga0500554_030383 3300053102 Bacteria 1587
123 Ga0500628_000636 3300053129 Bacteria 6330
124 Ga0587070_004947 3300059491 Bacteria 1717
125 Ga0587083_0010857 3300059505 Bacteria 1488
126 Ga0587067_000220 3300059640 Bacteria 4342
127 Ga0587072_016648 3300059643 Bacteria 1261
128 Ga0587079_004578 3300059647 Bacteria 1894
129 2980127385 2980125574 Bacteria 5567337
130 2512731117 2512564039 Bacteria 8739048
131 2550904777 2548877040 Bacteria 7507281
132 2563926213 2563366752 Bacteria 4961801
133 2571532145 2571042143 Bacteria 6986194
134 2573041718 2571042588 Bacteria 5045676
135 2578336271 2576861424 Bacteria 5270569
136 2580931646 2579778775 Bacteria 5360914
137 2587740879 2585428059 Bacteria 8696589
138 2595317751 2593339198 Bacteria 7267884
139 2601637191 2600255286 Bacteria 5390125
140 2621274454 2619619294 Bacteria 5575484
141 2643737713 2643221543 Bacteria 6628015
142 2644427865 2643221676 Bacteria 8119172
143 2673822247 2671180694 Bacteria 7506943
144 2723603145 2721755693 Bacteria 6126117
145 2728533825 2728368933 Bacteria 7044283
146 2730139174 2728369359 Bacteria 5621728
147 2739231011 2738543010 Bacteria 5583595
148 2739233391 2738543010 Bacteria 5583595
149 2753808517 2751185905 Bacteria 6142767
150 2793181953 2791355222 Bacteria 5898266
151 2802436302 2802428803 Bacteria 5806948
152 2819672037 2818991459 Bacteria 8736032
153 2821113905 2821111986 Bacteria 6894338
154 2831906524 2831905167 Bacteria 3319172
155 2852675957 2852673933 Bacteria 3347676
156 2857455944 2857453340 Bacteria 8090534
157 2857476694 2857472729 Bacteria 6568124
158 2864733816 2864733723 Bacteria 6770668
159 2865001109 2864997549 Bacteria 5139696
160 2865007863 2865002811 Bacteria 6333767
161 2881639267 2881636855 Bacteria 5205297
162 2885530261 2885526491 Bacteria 7164189
163 2889044489 2889042446 Bacteria 7618936
164 2889050649 2889049205 Bacteria 7524325
165 2889279108 2889276214 Bacteria 5979355
166 2889297836 2889295896 Bacteria 4704906
167 2898907603 2898907183 Bacteria 4067722
168 2904165822 2904162308 Bacteria 7086713
169 2904491367 2904490793 Bacteria 7046938
170 2904599434 2904595352 Bacteria 6124848
171 2904758935 2904755435 Bacteria 7986759
172 2919160641 2919160200 Bacteria 6929020
173 2919426145 2919425241 Bacteria 8055701
174 2925332006 2925326138 Bacteria 9652120
175 2928514407 2928510474 Bacteria 4815308
176 2929208167 2929206907 Bacteria 5918291
177 2931387923 2931384279 Bacteria 7299545
178 2936362087 2936361878 Bacteria 5632809
179 2938651428 2938649242 Bacteria 7118381
180 2939681721 2939679117 Bacteria 6921672
181 2939706056 2939702853 Bacteria 5139229
182 2945993473 2945991243 Bacteria 7008369
183 2946056227 2946053406 Bacteria 6978655
184 2968562707 2968558590 Bacteria 6956864
185 2971406699 2971403814 Bacteria 7370929
186 2971412038 2971410472 Bacteria 8311090
187 2981286316 2981284811 Bacteria 4641497
188 2981291266 2981289755 Bacteria 4641509
189 2981981961 2981980479 Bacteria 4641628
190 2981986860 2981985349 Bacteria 4641497
191 2984528685 2984527788 Bacteria 5288478
192 2984534787 2984532647 Bacteria 5288506
193 2988227721 2988225383 Bacteria 7221625
194 2996634180 2996632988 Bacteria 6921523
195 2996708727 2996706504 Bacteria 5757485
196 3006971905 3006969106 Bacteria 4739423
197 3006976198 3006973921 Bacteria 4423788
198 648169512 648028048 Bacteria 5394884
199 8054467482 8054465665 Bacteria 7323556
200 8054803892 8054795415 Bacteria 9785225
201 8055637154 8055632911 Bacteria 5283357
202 8056535041 8056533031 Bacteria 8964429
203 8057635725 8057632132 Bacteria 4726859
204 8057734182 8057733483 Bacteria 6578323
205 8057978484 8057977335 Bacteria 5694872
206 JGI25151J46595_10003858
207 Ga0055541_1001471
208 Ga0055541_1002208
209 Ga0070670_100037246
210 Ga0068869_100013001
211 Ga0070708_100004096
212 Ga0070708_100021663
213 Ga0070708_100174085
214 Ga0070662_100002956
215 Ga0070706_100036131
216 Ga0070707_100060227
217 Ga0070707_100172958
218 Ga0070707_100230023
219 Ga0070698_100000906
220 Ga0070698_100054475
221 Ga0070698_100103965
222 Ga0070697_100001657
223 Ga0070697_100068224
224 Ga0070686_100000239
225 Ga0070693_100093775
226 Ga0068858_100329884
227 Ga0075367_10032730
228 Ga0105244_10024550
229 Ga0105244_10051922
230 Ga0111539_10010674
231 Ga0105238_10000409
232 Ga0105246_10024120
233 Ga0157372_10063960
234 Ga0213876_10025308
235 Ga0209784_100134
236 Ga0209784_102198
237 Ga0209566_100151
238 Ga0209566_100234
239 Ga0209566_100259
240 Ga0209147_106718
241 Ga0209437_100357
242 Ga0209233_1001398
243 Ga0209675_1004359
244 Ga0209676_1018018
245 Ga0209025_1011422
246 Ga0207684_10093549
247 Ga0207646_10064704
248 Ga0207646_10103920
249 Ga0207694_10000228
250 Ga0207706_10001389
251 Ga0207703_10279719
252 Ga0265336_10038876
253 Ga0265342_10043974
254 Ga0373959_0000034
255 Ga0373955_0037673
256 Ga0395899_0022286
257 Ga0395899_0039051
258 Ga0395898_0118533
259 Ga0395901_0145568
260 Ga0436365_0547422
261 Ga0439439_0000832
262 Ga0439433_0024730
263 Ga0439449_0000041
264 Ga0439462_0004255
265 Ga0466966_0008093
266 Ga0466966_0010376
267 Ga0466966_0143556
268 Ga0466961_0071893
269 Ga0466961_0105252
270 Ga0466961_0112142
271 Ga0466957_0009626
272 Ga0466959_0009509
273 Ga0466959_0011696
274 Ga0466959_0044034
275 Ga0466959_0144411
276 Ga0466958_0001406
277 Ga0466958_0119070
278 Ga0495580_0014267
279 Ga0495628_0013681
280 Ga0495643_0000286
281 Ga0495660_0009766
282 Ga0495626_0013192
283 Ga0496112_0115177
284 Ga0496112_0252656
285 Ga0496116_0009307
286 Ga0496117_0019702
287 Ga0496118_0005035
288 Ga0496119_0001614
289 Ga0496120_0000791
290 Ga0496120_0024282
291 Ga0496121_0117424
292 Ga0496121_0178437
293 Ga0496121_0229958
294 Ga0496122_0009535
295 Ga0496122_0024979
296 Ga0496122_0027271
297 Ga0496122_0079266
298 Ga0496123_0005128
299 Ga0496123_0022768
300 Ga0496123_0071676
301 Ga0496124_0000478
302 Ga0496124_0000512
303 Ga0496124_0062159
304 Ga0496124_0099576
305 Ga0496125_0000535
306 Ga0496125_0000559
307 Ga0496125_0011757
308 Ga0496125_0093866
309 Ga0496125_0290561
310 Ga0496126_0000100
311 Ga0496126_0002544
312 Ga0496126_0002731
313 Ga0496126_0022660
314 Ga0501306_000812
315 Ga0501312_000670
316 Ga0501033_0015330
317 Ga0501033_0189228
318 Ga0501034_0037328
319 Ga0501043_0145529
320 Ga0501047_0000557
321 Ga0501047_0093128
322 Ga0501044_0003366
323 Ga0501044_0006399
324 Ga0501044_0030203
325 nmdc:mga06z11_50404_c1
326 nmdc:mga08y16_32787_c1
327 Ga0500554_030383
328 Ga0500628_000636
329 Ga0587070_004947
330 Ga0587083_0010857
331 Ga0587067_000220
332 Ga0587072_016648
333 Ga0587079_004578
334 2980127385
335 2512731117
336 2550904777
337 2563926213
338 2571532145
339 2573041718
340 2578336271
341 2580931646
342 2587740879
343 2595317751
344 2601637191
345 2621274454
346 2643737713
347 2644427865
348 2673822247
349 2723603145
350 2728533825
351 2730139174
352 2739231011
353 2739233391
354 2753808517
355 2793181953
356 2802436302
357 2819672037
358 2821113905
359 2831906524
360 2852675957
361 2857455944
362 2857476694
363 2864733816
364 2865001109
365 2865007863
366 2881639267
367 2885530261
368 2889044489
369 2889050649
370 2889279108
371 2889297836
372 2898907603
373 2904165822
374 2904491367
375 2904599434
376 2904758935
377 2919160641
378 2919426145
379 2925332006
380 2928514407
381 2929208167
382 2931387923
383 2936362087
384 2938651428
385 2939681721
386 2939706056
387 2945993473
388 2946056227
389 2968562707
390 2971406699
391 2971412038
392 2981286316
393 2981291266
394 2981981961
395 2981986860
396 2984528685
397 2984534787
398 2988227721
399 2996634180
400 2996708727
401 3006971905
402 3006976198
403 648169512
404 8054467482
405 8054803892
406 8055637154
407 8056535041
408 8057635725
409 8057734182
410 8057978484

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00285

Citrate_synt

Citrate synthase, C-terminal domain

76

424

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
6s87-assembly2.cif.gz_C crystal structure of 2-methylcitrate synthase (prpc) from pseudomonas aeruginosa in complex with oxaloacetate. 0.9317 13 347
6s87-assembly1.cif.gz_A crystal structure of 2-methylcitrate synthase (prpc) from pseudomonas aeruginosa in complex with oxaloacetate. 0.9311 12 347
3hwk-assembly4.cif.gz_G crystal structure of methylcitrate synthase from mycobacterium tuberculosis 0.9285 9 341
6abw-assembly1.cif.gz_A crystal structure of citrate synthase (msed_0281) from metallosphaera sedula in complex with acetyl-coa 0.9237 10 345
6s87-assembly1.cif.gz_B crystal structure of 2-methylcitrate synthase (prpc) from pseudomonas aeruginosa in complex with oxaloacetate. 0.9223 13 347
ID Description Score Start End Superfamily
3hwkH02 Mainly Alpha;Orthogonal Bundle;Cytochrome p450-Terp; domain 2;Cytochrome P450-Terp, domain 2 0.9254 201 295 1.10.230.10
3hwkA02 Mainly Alpha;Orthogonal Bundle;Cytochrome p450-Terp; domain 2;Cytochrome P450-Terp, domain 2 0.9246 201 295 1.10.230.10
3o8jA02 Mainly Alpha;Orthogonal Bundle;Cytochrome p450-Terp; domain 2;Cytochrome P450-Terp, domain 2 0.9124 201 295 1.10.230.10
2p2wA01 Mainly Alpha;Orthogonal Bundle;Citrate Synthase; domain 1;Citrate Synthase, domain 1 0.9047 13 327 1.10.580.10
2p2wA01 Mainly Alpha;Orthogonal Bundle;Citrate Synthase; domain 1;Citrate Synthase, domain 1 0.9009 13 327 1.10.580.10
ID Description Score Start End GO Terms
AF-A0A4R0X779-F1-model_v4 citrate synthase (unknown stereospecificity) (EC 2.3.3.16) 0.9525 101 314 GO:0004108
GO:0005975
GO:0006099
GO:0019679
GO:0050440
AF-A0A7Z7KHU9-F1-model_v4 deleted 0.9438 26 347
AF-A0A4Q6CH78-F1-model_v4 citrate synthase (unknown stereospecificity) (EC 2.3.3.16) 0.9423 5 294 GO:0004108
GO:0005829
GO:0005975
GO:0006099
AF-A0A2V5UFN2-F1-model_v4 citrate synthase (unknown stereospecificity) (EC 2.3.3.16) 0.9332 6 298 GO:0004108
GO:0005975
GO:0006099
AF-A0A7C2G161-F1-model_v4 Citrate synthase 0.9325 7 347 GO:0004108
GO:0005829
GO:0005975
GO:0006099

Map