F313722
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 205 | 163 | 183 | 531 |
Family's Representative Sequence
| Representative Sequence | 3300007265|Ga0099794_10008757|Ga0099794_100087571 |
| Length | 598 |
| Sequence | LCNLQAIAAGFTLNPIADTRVFHHTRREQGWNKIVQRQEGAMQRALIVLLALTAMATAAPARAAEEAVCVENATIDDLHAALAAGRTTAADLVRAYTARIAAYDRAGPRLNAVREMNPDALAIAASIDARKSGARRPLEGIPVLLKDNIATGDAEHTTAGSLALADAYANRDAAVTKLLREAGAVILGKANLTEFANILAIDMPSGYSSLGGQVKNPFALELNARGVPIVQPGGSSSGSAVAVAAGLTAVAIGTETSGSLLSPATQNGVVTVKPTVGLISRAGIIPITHTQDTAGPLTRTVRDAAILLNVLAAPDPLDEATRDLQRPADYTSVLDKDGLRGARIGIPSDPKDPANDVYYGALPPRAAGVMRDVMAALETAGATLVRANMPSISWMGGPGTDAAILNLNPESATRNQAERRPVVYLYELKHDLNAYLRDWAKGTRMHTMADIIAFNAANSDRALRFGQDIFLASEASQGGLEAIEYVAARRMDIRATRTLGIDAYMDEHKLDAILFPSRNGAAVAAKAGYPSVQVPAGMTAGVGVTATPDFPFGATFTGRAWSEPVLLRLAYAFEQAAKARRMPPGVPPLEPGCGAAAP |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2507262055 | Bradyrhizobium sp. WSM1417 | Isolate | Nodule |
| 2 | 2513237092 | Bradyrhizobium sp. WSM1743 | Isolate | Nodule |
| 3 | 2513237161 | Bradyrhizobium sp. WSM2793 | Isolate | Nodule |
| 4 | 2617270741 | Bradyrhizobium yuanmingense CCBAU 10071 | Isolate | Nodule |
| 5 | 2824732956 | Bradyrhizobium sp. HAMBI 2153 | Isolate | Unclassified |
| 6 | 2824746037 | Bradyrhizobium sp. HAMBI 2299 | Isolate | Unclassified |
| 7 | 2838122688 | Bradyrhizobium sp. CIR3A | Isolate | Nodule |
| 8 | 2874590934 | Bradyrhizobium canariense UBMA181 | Isolate | Nodule |
| 9 | 2874612657 | Bradyrhizobium forestalis INPA54B | Isolate | Nodule |
| 10 | 2874645413 | Bradyrhizobium canariense UBMA122 | Isolate | Nodule |
| 11 | 2876771140 | Bradyrhizobium canariense UBMA192 | Isolate | Nodule |
| 12 | 2876818435 | Bradyrhizobium canariense UBMA195 | Isolate | Nodule |
| 13 | 2879074833 | Bradyrhizobium canariense UBMA171 | Isolate | Nodule |
| 14 | 2879127579 | Bradyrhizobium canariense UBMA052 | Isolate | Nodule |
| 15 | 2879142872 | Bradyrhizobium canariense UBMA061 | Isolate | Nodule |
| 16 | 2906643746 | Bradyrhizobium genosp. SA-3 Rp7b | Isolate | Unclassified |
| 17 | 2908775508 | Bradyrhizobium sp. SUTN9-2 | Isolate | Unclassified |
| 18 | 2922393267 | Bradyrhizobium sp. WBAH10 | Isolate | Nodule |
| 19 | 3005483717 | Bradyrhizobium agreste CNPSo 4010 | Isolate | Unclassified |
| 20 | 3006973921 | Bacillus sp. FJAT-49736 | Isolate | Rhizosphere |
| 21 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 22 | 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Metagenome | Rhizosphere |
| 23 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 24 | 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Metagenome | Rhizosphere |
| 25 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 26 | 3300005434 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG | Metagenome | Rhizosphere |
| 27 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 28 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 29 | 3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Metagenome | Rhizosphere |
| 30 | 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Metagenome | Rhizosphere |
| 31 | 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Metagenome | Rhizosphere |
| 32 | 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Metagenome | Rhizosphere |
| 33 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 34 | 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Metagenome | Rhizosphere |
| 35 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 36 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 37 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 38 | 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Metagenome | Rhizosphere |
| 39 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 40 | 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Metagenome | Rhizosphere |
| 41 | 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Metagenome | Rhizosphere |
| 42 | 3300005547 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG | Metagenome | Rhizosphere |
| 43 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 44 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 45 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 46 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 47 | 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Metagenome | Rhizosphere |
| 48 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 49 | 3300005615 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG | Metagenome | Rhizosphere |
| 50 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 51 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 52 | 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Metagenome | Rhizosphere |
| 53 | 3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Metagenome | Rhizosphere |
| 54 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 55 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 56 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 57 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 58 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 59 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 60 | 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Metagenome | Rhizosphere |
| 61 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 63 | 3300006852 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Metagenome | Rhizosphere |
| 64 | 3300006871 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Metagenome | Rhizosphere |
| 65 | 3300006880 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Metagenome | Rhizosphere |
| 66 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300007076 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Metagenome | Rhizosphere |
| 68 | 3300007265 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 | Metagenome | Rhizosphere |
| 69 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 70 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 72 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 74 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 75 | 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Metagenome | Rhizosphere |
| 76 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 77 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 78 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 79 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 80 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 81 | 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Metagenome | Rhizosphere |
| 82 | 3300021320 | Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 | Metagenome | Nodule |
| 83 | 3300021321 | Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 | Metagenome | Nodule |
| 84 | 3300021324 | Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4 | Metagenome | Nodule |
| 85 | 3300021327 | Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 | Metagenome | Nodule |
| 86 | 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Metagenome | Unclassified |
| 87 | 3300021388 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 | Metagenome | Unclassified |
| 88 | 3300021441 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 | Metagenome | Rhizosphere |
| 89 | 3300025292 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 90 | 3300025294 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 91 | 3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 92 | 3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 93 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 94 | 3300025908 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 95 | 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 96 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 97 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 98 | 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 99 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 100 | 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 101 | 3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 102 | 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 103 | 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 104 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 105 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 106 | 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 107 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 108 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 109 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 110 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 111 | 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 112 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 113 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 114 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 115 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 116 | 3300027907 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) | Metagenome | Rhizosphere |
| 117 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 118 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 119 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 120 | 3300028573 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG | Metagenome | Rhizosphere |
| 121 | 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Metagenome | Rhizosphere |
| 122 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 123 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 124 | 3300035086 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 | Metagenome | Rhizosphere |
| 125 | 3300035118 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 | Metagenome | Rhizosphere |
| 126 | 3300035172 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 | Metagenome | Rhizosphere |
| 127 | 3300035691 | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 | Metagenome | Rhizosphere |
| 128 | 3300035692 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 129 | 3300035695 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 | Metagenome | Rhizosphere |
| 130 | 3300035724 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 | Metagenome | Rhizosphere |
| 131 | 3300036401 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 132 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 133 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 134 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 135 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 136 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 137 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 138 | 3300039438 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 | Metagenome | Rhizosphere |
| 139 | 3300039447 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 | Metagenome | Rhizosphere |
| 140 | 3300039450 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 | Metagenome | Unclassified |
| 141 | 3300039453 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 | Metagenome | Rhizosphere |
| 142 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 143 | 3300046454 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere | Metagenome | Rhizosphere |
| 144 | 3300046476 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere | Metagenome | Rhizosphere |
| 145 | 3300046499 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere | Metagenome | Rhizosphere |
| 146 | 3300046516 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere | Metagenome | Rhizosphere |
| 147 | 3300046559 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere | Metagenome | Rhizosphere |
| 148 | 3300048904 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled | Metagenome | Rhizoplane |
| 149 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 150 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 151 | 3300048909 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 | Metagenome | Rhizoplane |
| 152 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 153 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 154 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 155 | 3300049584 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 | Metagenome | Rhizosphere |
| 156 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 157 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 158 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 159 | 3300050515 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation | Metagenome | Rhizosphere |
| 160 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 161 | 3300053155 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere | Metagenome | Endosphere |
| 162 | 8006926726 | Bradyrhizobium guangdongense SM32 | Isolate | Unclassified |
| 163 | 8019648815 | Bradyrhizobium sp. GM24.11 | Isolate | Nodule |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 89.27 |
| Metatranscriptomes | 0 |
| Isolates | 10.73 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 2.44 |
| Nodule | 9.27 |
| Rhizoplane | 3.9 |
| Rhizosphere | 76.59 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 7.8 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0070683_100071150 | 3300005329 | Bacteria | 3246 |
| 2 | Ga0070683_100137395 | 3300005329 | Bacteria | 2315 |
| 3 | Ga0068869_100006908 | 3300005334 | Bacteria | 7221 |
| 4 | Ga0070661_100026373 | 3300005344 | Bacteria | 4179 |
| 5 | Ga0070661_100045607 | 3300005344 | Bacteria | 3205 |
| 6 | Ga0070675_100000709 | 3300005354 | Bacteria | 23182 |
| 7 | Ga0070671_100000573 | 3300005355 | Bacteria | 26158 |
| 8 | Ga0070709_10011735 | 3300005434 | Bacteria | 4892 |
| 9 | Ga0070714_100039222 | 3300005435 | Bacteria | 3986 |
| 10 | Ga0070714_100060800 | 3300005435 | Bacteria | 3243 |
| 11 | Ga0070714_100091043 | 3300005435 | Bacteria | 2672 |
| 12 | Ga0070714_100130886 | 3300005435 | Bacteria | 2242 |
| 13 | Ga0070714_100181006 | 3300005435 | Bacteria | 1918 |
| 14 | Ga0070713_100051857 | 3300005436 | Bacteria | 3395 |
| 15 | Ga0070710_10014325 | 3300005437 | Bacteria | 3990 |
| 16 | Ga0070711_100017014 | 3300005439 | Bacteria | 4624 |
| 17 | Ga0070711_100022351 | 3300005439 | Bacteria | 4098 |
| 18 | Ga0070700_100012964 | 3300005441 | Bacteria | 4674 |
| 19 | Ga0070678_100001744 | 3300005456 | Bacteria | 11694 |
| 20 | Ga0070681_10017515 | 3300005458 | Bacteria | 7160 |
| 21 | Ga0070681_10072864 | 3300005458 | Bacteria | 3397 |
| 22 | Ga0070707_100141942 | 3300005468 | Bacteria | 2337 |
| 23 | Ga0070698_100051495 | 3300005471 | Bacteria | 4193 |
| 24 | Ga0070679_100044731 | 3300005530 | Bacteria | 4411 |
| 25 | Ga0070684_100010569 | 3300005535 | Bacteria | 7318 |
| 26 | Ga0070697_100053579 | 3300005536 | Bacteria | 3278 |
| 27 | Ga0068853_100008114 | 3300005539 | Bacteria | 8428 |
| 28 | Ga0070672_100074102 | 3300005543 | Bacteria | 2715 |
| 29 | Ga0070696_100033520 | 3300005546 | Bacteria | 3529 |
| 30 | Ga0070693_100017907 | 3300005547 | Bacteria | 3692 |
| 31 | Ga0070665_100150022 | 3300005548 | Bacteria | 2334 |
| 32 | Ga0068855_100061573 | 3300005563 | Bacteria | 4385 |
| 33 | Ga0070664_100000718 | 3300005564 | Bacteria | 25389 |
| 34 | Ga0068857_100007375 | 3300005577 | Bacteria | 9467 |
| 35 | Ga0068854_100116201 | 3300005578 | Bacteria | 2025 |
| 36 | Ga0068856_100010892 | 3300005614 | Bacteria | 8825 |
| 37 | Ga0070702_100004312 | 3300005615 | Bacteria | 6484 |
| 38 | Ga0068852_100019836 | 3300005616 | Bacteria | 5332 |
| 39 | Ga0068859_100012098 | 3300005617 | Bacteria | 8673 |
| 40 | Ga0068861_100090275 | 3300005719 | Bacteria | 2416 |
| 41 | Ga0068870_10000619 | 3300005840 | Bacteria | 13526 |
| 42 | Ga0068863_100005811 | 3300005841 | Bacteria | 12093 |
| 43 | Ga0068858_100008497 | 3300005842 | Bacteria | 9867 |
| 44 | Ga0068858_100010525 | 3300005842 | Bacteria | 8760 |
| 45 | Ga0068860_100044325 | 3300005843 | Bacteria | 4240 |
| 46 | Ga0068862_100003233 | 3300005844 | Bacteria | 14102 |
| 47 | Ga0070717_10015560 | 3300006028 | Bacteria | 5881 |
| 48 | Ga0070717_10016858 | 3300006028 | Bacteria | 5671 |
| 49 | Ga0070717_10046073 | 3300006028 | Bacteria | 3567 |
| 50 | Ga0075365_10044933 | 3300006038 | Bacteria | 2896 |
| 51 | Ga0070712_100030188 | 3300006175 | Bacteria | 3640 |
| 52 | Ga0070712_100075519 | 3300006175 | Bacteria | 2424 |
| 53 | Ga0097621_100005060 | 3300006237 | Bacteria | 9264 |
| 54 | Ga0075431_100173436 | 3300006847 | Bacteria | 2215 |
| 55 | Ga0075433_10044010 | 3300006852 | Bacteria | 3878 |
| 56 | Ga0075434_100002802 | 3300006871 | Bacteria | 15445 |
| 57 | Ga0075429_100013329 | 3300006880 | Bacteria | 7127 |
| 58 | Ga0097620_100012098 | 3300006931 | Bacteria | 8673 |
| 59 | Ga0075435_100118679 | 3300007076 | Bacteria | 2205 |
| 60 | Ga0099794_10008757 | 3300007265 | Bacteria | 4215 |
| 61 | Ga0105240_10011319 | 3300009093 | Bacteria | 12430 |
| 62 | Ga0111539_10029693 | 3300009094 | Bacteria | 6655 |
| 63 | Ga0111539_10051065 | 3300009094 | Bacteria | 4926 |
| 64 | Ga0105245_10012837 | 3300009098 | Bacteria | 7299 |
| 65 | Ga0114129_10002127 | 3300009147 | Bacteria | 27301 |
| 66 | Ga0105237_10004915 | 3300009545 | Bacteria | 15295 |
| 67 | Ga0105239_10006518 | 3300010375 | Bacteria | 13528 |
| 68 | Ga0105239_10103444 | 3300010375 | Bacteria | 3152 |
| 69 | Ga0105239_10163018 | 3300010375 | Bacteria | 2491 |
| 70 | Ga0105246_10001015 | 3300011119 | Bacteria | 16140 |
| 71 | Ga0157373_10026744 | 3300013100 | Bacteria | 4164 |
| 72 | Ga0157371_10011812 | 3300013102 | Bacteria | 6706 |
| 73 | Ga0157369_10040796 | 3300013105 | Bacteria | 5067 |
| 74 | Ga0157374_10021257 | 3300013296 | Bacteria | 5771 |
| 75 | Ga0163163_10003366 | 3300014325 | Bacteria | 13569 |
| 76 | Ga0157377_10001060 | 3300014745 | Bacteria | 11618 |
| 77 | Ga0157377_10002778 | 3300014745 | Bacteria | 7798 |
| 78 | Ga0214544_1000004 | 3300021320 | Bacteria | 455869 |
| 79 | Ga0214542_1000001 | 3300021321 | Bacteria | 1018696 |
| 80 | Ga0214545_1000001 | 3300021324 | Bacteria | 1092817 |
| 81 | Ga0214543_1000006 | 3300021327 | Bacteria | 443395 |
| 82 | Ga0213876_10011846 | 3300021384 | Bacteria | 4650 |
| 83 | Ga0213875_10000033 | 3300021388 | Bacteria | 170944 |
| 84 | Ga0213875_10003107 | 3300021388 | Bacteria | 9573 |
| 85 | Ga0213871_10001006 | 3300021441 | Bacteria | 4412 |
| 86 | Ga0209676_1002139 | 3300025292 | Bacteria | 15036 |
| 87 | Ga0209025_1000608 | 3300025294 | Bacteria | 64520 |
| 88 | Ga0207688_10019405 | 3300025901 | Bacteria | 3704 |
| 89 | Ga0207699_10032884 | 3300025906 | Bacteria | 2926 |
| 90 | Ga0207645_10009985 | 3300025907 | Bacteria | 6538 |
| 91 | Ga0207643_10000196 | 3300025908 | Bacteria | 41902 |
| 92 | Ga0207684_10058479 | 3300025910 | Bacteria | 3271 |
| 93 | Ga0207707_10057631 | 3300025912 | Bacteria | 3381 |
| 94 | Ga0207695_10000006 | 3300025913 | Bacteria | 1135309 |
| 95 | Ga0207693_10001780 | 3300025915 | Bacteria | 18900 |
| 96 | Ga0207693_10019501 | 3300025915 | Bacteria | 5393 |
| 97 | Ga0207657_10010302 | 3300025919 | Bacteria | 9332 |
| 98 | Ga0207649_10003306 | 3300025920 | Bacteria | 8824 |
| 99 | Ga0207649_10039769 | 3300025920 | Bacteria | 2853 |
| 100 | Ga0207681_10036310 | 3300025923 | Bacteria | 3251 |
| 101 | Ga0207687_10007083 | 3300025927 | Bacteria | 7390 |
| 102 | Ga0207700_10079785 | 3300025928 | Bacteria | 2550 |
| 103 | Ga0207664_10012584 | 3300025929 | Bacteria | 6052 |
| 104 | Ga0207664_10100042 | 3300025929 | Bacteria | 2393 |
| 105 | Ga0207690_10079182 | 3300025932 | Bacteria | 2289 |
| 106 | Ga0207689_10001658 | 3300025942 | Bacteria | 21104 |
| 107 | Ga0207689_10003284 | 3300025942 | Bacteria | 14822 |
| 108 | Ga0207661_10005347 | 3300025944 | Bacteria | 9040 |
| 109 | Ga0207661_10066216 | 3300025944 | Bacteria | 2934 |
| 110 | Ga0207667_10076703 | 3300025949 | Bacteria | 3468 |
| 111 | Ga0207703_10013416 | 3300026035 | Bacteria | 6384 |
| 112 | Ga0207703_10043585 | 3300026035 | Bacteria | 3602 |
| 113 | Ga0207678_10000794 | 3300026067 | Bacteria | 28950 |
| 114 | Ga0207678_10004191 | 3300026067 | Bacteria | 12941 |
| 115 | Ga0207708_10011656 | 3300026075 | Bacteria | 6550 |
| 116 | Ga0207702_10008552 | 3300026078 | Bacteria | 8626 |
| 117 | Ga0207676_10000651 | 3300026095 | Bacteria | 27828 |
| 118 | Ga0207674_10004274 | 3300026116 | Bacteria | 17218 |
| 119 | Ga0207674_10027554 | 3300026116 | Bacteria | 6008 |
| 120 | Ga0207683_10000757 | 3300026121 | Bacteria | 29362 |
| 121 | Ga0207428_10039344 | 3300027907 | Bacteria | 3840 |
| 122 | Ga0268266_10073198 | 3300028379 | Bacteria | 2973 |
| 123 | Ga0268265_10000548 | 3300028380 | Bacteria | 38223 |
| 124 | Ga0268264_10077679 | 3300028381 | Bacteria | 2829 |
| 125 | Ga0265334_10010755 | 3300028573 | Bacteria | 3864 |
| 126 | Ga0307408_100024628 | 3300031548 | Bacteria | 4113 |
| 127 | Ga0307410_10111393 | 3300031852 | Bacteria | 1981 |
| 128 | Ga0307406_10009682 | 3300031901 | Bacteria | 5417 |
| 129 | Ga0373934_0011459 | 3300035086 | Bacteria | 3334 |
| 130 | Ga0373934_0040649 | 3300035086 | Bacteria | 1835 |
| 131 | Ga0373954_0011231 | 3300035118 | Bacteria | 3965 |
| 132 | Ga0373955_0006995 | 3300035172 | Bacteria | 5164 |
| 133 | Ga0373931_0088091 | 3300035691 | Bacteria | 1725 |
| 134 | Ga0373935_0105083 | 3300035692 | Bacteria | 1867 |
| 135 | Ga0373927_0018951 | 3300035695 | Bacteria | 4515 |
| 136 | Ga0373927_0028564 | 3300035695 | Bacteria | 3639 |
| 137 | Ga0373933_0092224 | 3300035724 | Bacteria | 1871 |
| 138 | Ga0373937_0013693 | 3300036401 | Bacteria | 7145 |
| 139 | Ga0373937_0020017 | 3300036401 | Bacteria | 5994 |
| 140 | Ga0373937_0097947 | 3300036401 | Bacteria | 2720 |
| 141 | Ga0373925_0023843 | 3300037068 | Bacteria | 4464 |
| 142 | Ga0395899_0001978 | 3300037312 | Bacteria | 16855 |
| 143 | Ga0395899_0046095 | 3300037312 | Bacteria | 3247 |
| 144 | Ga0395900_0019093 | 3300037418 | Bacteria | 6990 |
| 145 | Ga0395898_0120620 | 3300037466 | Bacteria | 2512 |
| 146 | Ga0436364_0078934 | 3300037853 | Bacteria | 26592 |
| 147 | Ga0436364_0640586 | 3300037853 | Bacteria | 24713 |
| 148 | Ga0436364_1182911 | 3300037853 | Bacteria | 8118 |
| 149 | Ga0436365_1348470 | 3300039437 | Bacteria | 4159 |
| 150 | Ga0436365_1786012 | 3300039437 | Bacteria | 5887 |
| 151 | Ga0436360_1097460 | 3300039438 | Bacteria | 5667 |
| 152 | Ga0436360_1290418 | 3300039438 | Bacteria | 3400 |
| 153 | Ga0436361_0763822 | 3300039447 | Bacteria | 4175 |
| 154 | Ga0436363_0168300 | 3300039450 | Bacteria | 4447 |
| 155 | Ga0436363_1251687 | 3300039450 | Bacteria | 5500 |
| 156 | Ga0436362_0945271 | 3300039453 | Bacteria | 2018 |
| 157 | Ga0466972_0000171 | 3300044658 | Bacteria | 50915 |
| 158 | Ga0495592_0067413 | 3300046454 | Bacteria | 2615 |
| 159 | Ga0495592_0105347 | 3300046454 | Bacteria | 2003 |
| 160 | Ga0495662_0014239 | 3300046476 | Bacteria | 3870 |
| 161 | Ga0495594_0007602 | 3300046499 | Bacteria | 5578 |
| 162 | Ga0495628_0083957 | 3300046516 | Bacteria | 2472 |
| 163 | Ga0495667_0062698 | 3300046559 | Bacteria | 2435 |
| 164 | Ga0496101_0100022 | 3300048904 | Bacteria | 2169 |
| 165 | Ga0496102_0002901 | 3300048905 | Bacteria | 14530 |
| 166 | Ga0496102_0139653 | 3300048905 | Bacteria | 2271 |
| 167 | Ga0496105_0007730 | 3300048908 | Bacteria | 8341 |
| 168 | Ga0496105_0025410 | 3300048908 | Bacteria | 4821 |
| 169 | Ga0496106_0029268 | 3300048909 | Bacteria | 4104 |
| 170 | Ga0496110_0097780 | 3300048913 | Bacteria | 2630 |
| 171 | Ga0496111_0000726 | 3300048914 | Bacteria | 17575 |
| 172 | Ga0501034_0001770 | 3300049571 | Bacteria | 27609 |
| 173 | Ga0501034_0010133 | 3300049571 | Bacteria | 9832 |
| 174 | Ga0501034_0189086 | 3300049571 | Bacteria | 2022 |
| 175 | Ga0501068_0037148 | 3300049584 | Bacteria | 2916 |
| 176 | nmdc:mga05p37_178470_c1 | 3300050507 | Bacteria | 2586 |
| 177 | nmdc:mga09592_26260_c1 | 3300050508 | Bacteria | 4824 |
| 178 | nmdc:mga08y16_17936_c1 | 3300050511 | Bacteria | 7458 |
| 179 | nmdc:mga08y16_18700_c1 | 3300050511 | Bacteria | 7298 |
| 180 | nmdc:mga08y16_92368_c1 | 3300050511 | Bacteria | 3154 |
| 181 | nmdc:mga0a205_70155_c1 | 3300050515 | Bacteria | 3383 |
| 182 | Ga0500616_0001772 | 3300053153 | Bacteria | 19731 |
| 183 | Ga0500620_030052 | 3300053155 | Bacteria | 1712 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | iso_pu_bacteria | 2838122688 | 2838125872 | 395 |
| 2 | 3300046454 | Ga0495592_0105347 | Ga0495592_0105347_16_1356 | 397 |
| 3 | 3300046559 | Ga0495667_0062698 | Ga0495667_0062698_16_1356 | 397 |
| 4 | 3300048905 | Ga0496102_0139653 | Ga0496102_0139653_869_2212 | 398 |
| 5 | iso_pu_bacteria | 2617270741 | 2617378609 | 416 |
| 6 | 3300039438 | Ga0436360_1097460 | Ga0436360_1097460_1534_3165 | 421 |
| 7 | 3300039450 | Ga0436363_1251687 | Ga0436363_1251687_2084_3715 | 421 |
| 8 | 3300035086 | Ga0373934_0040649 | Ga0373934_0040649_168_1739 | 428 |
| 9 | 3300053155 | Ga0500620_030052 | Ga0500620_030052_260_1696 | 429 |
| 10 | 3300005458 | Ga0070681_10072864 | Ga0070681_100728643 | 444 |
| 11 | 3300025912 | Ga0207707_10057631 | Ga0207707_100576313 | 444 |
| 12 | 3300046516 | Ga0495628_0083957 | Ga0495628_0083957_20_1537 | 448 |
| 13 | 3300006028 | Ga0070717_10015560 | Ga0070717_100155607 | 450 |
| 14 | 3300006175 | Ga0070712_100030188 | Ga0070712_1000301883 | 450 |
| 15 | 3300035118 | Ga0373954_0011231 | Ga0373954_0011231_1367_2938 | 450 |
| 16 | 3300035691 | Ga0373931_0088091 | Ga0373931_0088091_45_1667 | 450 |
| 17 | 3300039453 | Ga0436362_0945271 | Ga0436362_0945271_61_1719 | 453 |
| 18 | 3300025292 | Ga0209676_1002139 | Ga0209676_100213911 | 454 |
| 19 | 3300025294 | Ga0209025_1000608 | Ga0209025_100060856 | 455 |
| 20 | 3300035172 | Ga0373955_0006995 | Ga0373955_0006995_2759_4330 | 455 |
| 21 | 3300005844 | Ga0068862_100003233 | Ga0068862_1000032332 | 458 |
| 22 | 3300028380 | Ga0268265_10000548 | Ga0268265_1000054811 | 458 |
| 23 | iso_pu_bacteria | 3006973921 | 3006977561 | 460 |
| 24 | 3300005434 | Ga0070709_10011735 | Ga0070709_100117352 | 461 |
| 25 | 3300005435 | Ga0070714_100060800 | Ga0070714_1000608001 | 461 |
| 26 | 3300005437 | Ga0070710_10014325 | Ga0070710_100143253 | 461 |
| 27 | 3300005439 | Ga0070711_100017014 | Ga0070711_1000170143 | 461 |
| 28 | 3300025915 | Ga0207693_10001780 | Ga0207693_1000178011 | 461 |
| 29 | 3300031852 | Ga0307410_10111393 | Ga0307410_101113932 | 461 |
| 30 | 3300025915 | Ga0207693_10019501 | Ga0207693_100195015 | 462 |
| 31 | iso_pu_bacteria | 3005483717 | 3005485052 | 463 |
| 32 | 3300039438 | Ga0436360_1290418 | Ga0436360_1290418_657_2372 | 464 |
| 33 | 3300006038 | Ga0075365_10044933 | Ga0075365_100449333 | 466 |
| 34 | 3300035695 | Ga0373927_0018951 | Ga0373927_0018951_865_2538 | 466 |
| 35 | 3300037068 | Ga0373925_0023843 | Ga0373925_0023843_1871_3544 | 466 |
| 36 | 3300039447 | Ga0436361_0763822 | Ga0436361_0763822_1142_2857 | 466 |
| 37 | 3300005435 | Ga0070714_100091043 | Ga0070714_1000910432 | 467 |
| 38 | 3300021384 | Ga0213876_10011846 | Ga0213876_100118462 | 467 |
| 39 | 3300035086 | Ga0373934_0011459 | Ga0373934_0011459_678_2378 | 467 |
| 40 | 3300035695 | Ga0373927_0028564 | Ga0373927_0028564_408_2075 | 467 |
| 41 | 3300036401 | Ga0373937_0020017 | Ga0373937_0020017_1030_2730 | 467 |
| 42 | 3300039437 | Ga0436365_1786012 | Ga0436365_1786012_698_2422 | 467 |
| 43 | 3300048904 | Ga0496101_0100022 | Ga0496101_0100022_460_2133 | 467 |
| 44 | 3300006028 | Ga0070717_10046073 | Ga0070717_100460733 | 468 |
| 45 | 3300035692 | Ga0373935_0105083 | Ga0373935_0105083_15_1691 | 468 |
| 46 | 3300046476 | Ga0495662_0014239 | Ga0495662_0014239_734_2401 | 468 |
| 47 | 3300005435 | Ga0070714_100130886 | Ga0070714_1001308861 | 469 |
| 48 | 3300025929 | Ga0207664_10100042 | Ga0207664_101000422 | 469 |
| 49 | 3300035724 | Ga0373933_0092224 | Ga0373933_0092224_25_1611 | 470 |
| 50 | 3300036401 | Ga0373937_0013693 | Ga0373937_0013693_2904_4520 | 470 |
| 51 | 3300009093 | Ga0105240_10011319 | Ga0105240_1001131910 | 471 |
| 52 | 3300009545 | Ga0105237_10004915 | Ga0105237_1000491515 | 471 |
| 53 | 3300010375 | Ga0105239_10006518 | Ga0105239_1000651811 | 471 |
| 54 | 3300021388 | Ga0213875_10003107 | Ga0213875_100031074 | 471 |
| 55 | 3300025913 | Ga0207695_10000006 | Ga0207695_1000000669 | 471 |
| 56 | 3300037853 | Ga0436364_0078934 | Ga0436364_0078934_17098_18666 | 471 |
| 57 | 3300005471 | Ga0070698_100051495 | Ga0070698_1000514953 | 472 |
| 58 | 3300021320 | Ga0214544_1000004 | Ga0214544_1000004240 | 472 |
| 59 | 3300021321 | Ga0214542_1000001 | Ga0214542_1000001113 | 472 |
| 60 | 3300021324 | Ga0214545_1000001 | Ga0214545_1000001180 | 472 |
| 61 | 3300021327 | Ga0214543_1000006 | Ga0214543_1000006177 | 472 |
| 62 | 3300025910 | Ga0207684_10058479 | Ga0207684_100584792 | 472 |
| 63 | iso_pu_bacteria | 2507262055 | 2507504700 | 472 |
| 64 | iso_pu_bacteria | 2874590934 | 2874593702 | 472 |
| 65 | iso_pu_bacteria | 2874645413 | 2874647965 | 472 |
| 66 | iso_pu_bacteria | 2876771140 | 2876772793 | 472 |
| 67 | iso_pu_bacteria | 2876818435 | 2876826478 | 472 |
| 68 | iso_pu_bacteria | 2879074833 | 2879077489 | 472 |
| 69 | iso_pu_bacteria | 2879127579 | 2879134407 | 472 |
| 70 | iso_pu_bacteria | 2879142872 | 2879147366 | 472 |
| 71 | 3300025923 | Ga0207681_10036310 | Ga0207681_100363102 | 473 |
| 72 | 3300036401 | Ga0373937_0097947 | Ga0373937_0097947_521_2113 | 473 |
| 73 | 3300044658 | Ga0466972_0000171 | Ga0466972_0000171_3778_5391 | 473 |
| 74 | 3300046454 | Ga0495592_0067413 | Ga0495592_0067413_179_1771 | 473 |
| 75 | iso_pu_bacteria | 8019648815 | 8019653115 | 473 |
| 76 | 3300048908 | Ga0496105_0025410 | Ga0496105_0025410_155_1879 | 474 |
| 77 | 3300048913 | Ga0496110_0097780 | Ga0496110_0097780_326_2050 | 474 |
| 78 | 3300049571 | Ga0501034_0189086 | Ga0501034_0189086_41_1651 | 474 |
| 79 | 3300005435 | Ga0070714_100039222 | Ga0070714_1000392222 | 475 |
| 80 | 3300006028 | Ga0070717_10016858 | Ga0070717_100168584 | 475 |
| 81 | 3300025929 | Ga0207664_10012584 | Ga0207664_100125846 | 475 |
| 82 | 3300046499 | Ga0495594_0007602 | Ga0495594_0007602_3339_4937 | 475 |
| 83 | iso_pu_bacteria | 8006926726 | 8006932541 | 475 |
| 84 | iso_pu_bacteria | 2824746037 | 2824752768 | 476 |
| 85 | iso_pu_bacteria | 2513237092 | 2513622545 | 477 |
| 86 | iso_pu_bacteria | 2513237161 | 2514010211 | 478 |
| 87 | iso_pu_bacteria | 2874612657 | 2874617221 | 478 |
| 88 | 3300039437 | Ga0436365_1348470 | Ga0436365_1348470_233_1885 | 479 |
| 89 | 3300049571 | Ga0501034_0001770 | Ga0501034_0001770_14199_15845 | 480 |
| 90 | 3300050511 | nmdc:mga08y16_18700_c1 | nmdc:mga08y16_18700_c1_1650_3329 | 480 |
| 91 | 3300053153 | Ga0500616_0001772 | Ga0500616_0001772_2645_4303 | 480 |
| 92 | iso_pu_bacteria | 2906643746 | 2906651615 | 480 |
| 93 | 3300005617 | Ga0068859_100012098 | Ga0068859_1000120986 | 481 |
| 94 | 3300005842 | Ga0068858_100010525 | Ga0068858_1000105255 | 481 |
| 95 | 3300005843 | Ga0068860_100044325 | Ga0068860_1000443253 | 481 |
| 96 | 3300006931 | Ga0097620_100012098 | Ga0097620_1000120986 | 481 |
| 97 | 3300014325 | Ga0163163_10003366 | Ga0163163_100033663 | 481 |
| 98 | 3300026035 | Ga0207703_10013416 | Ga0207703_100134167 | 481 |
| 99 | 3300028381 | Ga0268264_10077679 | Ga0268264_100776791 | 481 |
| 100 | 3300005536 | Ga0070697_100053579 | Ga0070697_1000535792 | 482 |
| 101 | 3300039450 | Ga0436363_0168300 | Ga0436363_0168300_2121_3821 | 482 |
| 102 | iso_pu_bacteria | 2908775508 | 2908780855 | 482 |
| 103 | iso_pu_bacteria | 2922393267 | 2922397371 | 482 |
| 104 | 3300037312 | Ga0395899_0046095 | Ga0395899_0046095_186_1853 | 483 |
| 105 | 3300049571 | Ga0501034_0010133 | Ga0501034_0010133_7577_9229 | 483 |
| 106 | 3300049584 | Ga0501068_0037148 | Ga0501068_0037148_60_1712 | 483 |
| 107 | iso_pu_bacteria | 2824732956 | 2824738409 | 483 |
| 108 | 3300005329 | Ga0070683_100137395 | Ga0070683_1001373951 | 484 |
| 109 | 3300005458 | Ga0070681_10017515 | Ga0070681_100175154 | 484 |
| 110 | 3300005468 | Ga0070707_100141942 | Ga0070707_1001419422 | 484 |
| 111 | 3300005548 | Ga0070665_100150022 | Ga0070665_1001500222 | 484 |
| 112 | 3300005578 | Ga0068854_100116201 | Ga0068854_1001162011 | 484 |
| 113 | 3300013105 | Ga0157369_10040796 | Ga0157369_100407963 | 484 |
| 114 | 3300021441 | Ga0213871_10001006 | Ga0213871_100010065 | 484 |
| 115 | 3300025920 | Ga0207649_10039769 | Ga0207649_100397692 | 484 |
| 116 | 3300025949 | Ga0207667_10076703 | Ga0207667_100767032 | 484 |
| 117 | 3300028379 | Ga0268266_10073198 | Ga0268266_100731982 | 484 |
| 118 | 3300028573 | Ga0265334_10010755 | Ga0265334_100107554 | 484 |
| 119 | 3300037312 | Ga0395899_0001978 | Ga0395899_0001978_13566_15227 | 484 |
| 120 | 3300037418 | Ga0395900_0019093 | Ga0395900_0019093_3961_5622 | 484 |
| 121 | 3300037466 | Ga0395898_0120620 | Ga0395898_0120620_532_2193 | 484 |
| 122 | 3300005546 | Ga0070696_100033520 | Ga0070696_1000335202 | 485 |
| 123 | 3300037853 | Ga0436364_1182911 | Ga0436364_1182911_5681_7405 | 485 |
| 124 | 3300007265 | Ga0099794_10008757 | Ga0099794_100087571 | 486 |
| 125 | 3300021388 | Ga0213875_10000033 | Ga0213875_1000003327 | 487 |
| 126 | 3300037853 | Ga0436364_0640586 | Ga0436364_0640586_13110_14834 | 487 |
| 127 | 3300013100 | Ga0157373_10026744 | Ga0157373_100267442 | 494 |
| 128 | 3300006880 | Ga0075429_100013329 | Ga0075429_1000133293 | 495 |
| 129 | 3300009147 | Ga0114129_10002127 | Ga0114129_100021276 | 495 |
| 130 | 3300050507 | nmdc:mga05p37_178470_c1 | nmdc:mga05p37_178470_c1_728_2404 | 495 |
| 131 | 3300050508 | nmdc:mga09592_26260_c1 | nmdc:mga09592_26260_c1_110_1786 | 495 |
| 132 | 3300005344 | Ga0070661_100026373 | Ga0070661_1000263732 | 496 |
| 133 | 3300005355 | Ga0070671_100000573 | Ga0070671_10000057311 | 496 |
| 134 | 3300005441 | Ga0070700_100012964 | Ga0070700_1000129641 | 496 |
| 135 | 3300005456 | Ga0070678_100001744 | Ga0070678_1000017443 | 496 |
| 136 | 3300005530 | Ga0070679_100044731 | Ga0070679_1000447313 | 496 |
| 137 | 3300005539 | Ga0068853_100008114 | Ga0068853_1000081143 | 496 |
| 138 | 3300005547 | Ga0070693_100017907 | Ga0070693_1000179072 | 496 |
| 139 | 3300005563 | Ga0068855_100061573 | Ga0068855_1000615732 | 496 |
| 140 | 3300005615 | Ga0070702_100004312 | Ga0070702_1000043124 | 496 |
| 141 | 3300025901 | Ga0207688_10019405 | Ga0207688_100194051 | 496 |
| 142 | 3300025908 | Ga0207643_10000196 | Ga0207643_1000019614 | 496 |
| 143 | 3300005435 | Ga0070714_100181006 | Ga0070714_1001810061 | 498 |
| 144 | 3300005436 | Ga0070713_100051857 | Ga0070713_1000518573 | 498 |
| 145 | 3300005439 | Ga0070711_100022351 | Ga0070711_1000223513 | 498 |
| 146 | 3300005614 | Ga0068856_100010892 | Ga0068856_1000108926 | 498 |
| 147 | 3300005616 | Ga0068852_100019836 | Ga0068852_1000198363 | 498 |
| 148 | 3300005719 | Ga0068861_100090275 | Ga0068861_1000902753 | 498 |
| 149 | 3300005840 | Ga0068870_10000619 | Ga0068870_100006196 | 498 |
| 150 | 3300005841 | Ga0068863_100005811 | Ga0068863_1000058118 | 498 |
| 151 | 3300005842 | Ga0068858_100008497 | Ga0068858_1000084973 | 498 |
| 152 | 3300006175 | Ga0070712_100075519 | Ga0070712_1000755192 | 498 |
| 153 | 3300006237 | Ga0097621_100005060 | Ga0097621_1000050601 | 498 |
| 154 | 3300006852 | Ga0075433_10044010 | Ga0075433_100440102 | 498 |
| 155 | 3300006871 | Ga0075434_100002802 | Ga0075434_1000028029 | 498 |
| 156 | 3300007076 | Ga0075435_100118679 | Ga0075435_1001186792 | 498 |
| 157 | 3300009094 | Ga0111539_10029693 | Ga0111539_100296931 | 498 |
| 158 | 3300010375 | Ga0105239_10103444 | Ga0105239_101034442 | 498 |
| 159 | 3300011119 | Ga0105246_10001015 | Ga0105246_100010154 | 498 |
| 160 | 3300013102 | Ga0157371_10011812 | Ga0157371_100118122 | 498 |
| 161 | 3300013296 | Ga0157374_10021257 | Ga0157374_100212573 | 498 |
| 162 | 3300014745 | Ga0157377_10001060 | Ga0157377_100010603 | 498 |
| 163 | 3300025906 | Ga0207699_10032884 | Ga0207699_100328842 | 498 |
| 164 | 3300025907 | Ga0207645_10009985 | Ga0207645_100099852 | 498 |
| 165 | 3300025919 | Ga0207657_10010302 | Ga0207657_100103022 | 498 |
| 166 | 3300025920 | Ga0207649_10003306 | Ga0207649_100033063 | 498 |
| 167 | 3300025928 | Ga0207700_10079785 | Ga0207700_100797852 | 498 |
| 168 | 3300025932 | Ga0207690_10079182 | Ga0207690_100791822 | 498 |
| 169 | 3300025942 | Ga0207689_10001658 | Ga0207689_1000165816 | 498 |
| 170 | 3300025944 | Ga0207661_10005347 | Ga0207661_100053472 | 498 |
| 171 | 3300026067 | Ga0207678_10000794 | Ga0207678_100007943 | 498 |
| 172 | 3300026075 | Ga0207708_10011656 | Ga0207708_100116561 | 498 |
| 173 | 3300026078 | Ga0207702_10008552 | Ga0207702_100085523 | 498 |
| 174 | 3300026095 | Ga0207676_10000651 | Ga0207676_1000065110 | 498 |
| 175 | 3300026116 | Ga0207674_10027554 | Ga0207674_100275543 | 498 |
| 176 | 3300026121 | Ga0207683_10000757 | Ga0207683_100007578 | 498 |
| 177 | 3300048905 | Ga0496102_0002901 | Ga0496102_0002901_1385_2956 | 498 |
| 178 | 3300048908 | Ga0496105_0007730 | Ga0496105_0007730_945_2516 | 498 |
| 179 | 3300048909 | Ga0496106_0029268 | Ga0496106_0029268_2494_4065 | 498 |
| 180 | 3300048914 | Ga0496111_0000726 | Ga0496111_0000726_15652_17223 | 498 |
| 181 | 3300050511 | nmdc:mga08y16_17936_c1 | nmdc:mga08y16_17936_c1_2116_3687 | 498 |
| 182 | 3300050515 | nmdc:mga0a205_70155_c1 | nmdc:mga0a205_70155_c1_229_1800 | 498 |
| 183 | 3300031548 | Ga0307408_100024628 | Ga0307408_1000246282 | 502 |
| 184 | 3300031901 | Ga0307406_10009682 | Ga0307406_100096822 | 502 |
| 185 | 3300006847 | Ga0075431_100173436 | Ga0075431_1001734362 | 511 |
| 186 | 3300005329 | Ga0070683_100071150 | Ga0070683_1000711502 | 518 |
| 187 | 3300005334 | Ga0068869_100006908 | Ga0068869_1000069084 | 518 |
| 188 | 3300005344 | Ga0070661_100045607 | Ga0070661_1000456072 | 518 |
| 189 | 3300005354 | Ga0070675_100000709 | Ga0070675_1000007098 | 518 |
| 190 | 3300005535 | Ga0070684_100010569 | Ga0070684_1000105696 | 518 |
| 191 | 3300005543 | Ga0070672_100074102 | Ga0070672_1000741021 | 518 |
| 192 | 3300005564 | Ga0070664_100000718 | Ga0070664_10000071818 | 518 |
| 193 | 3300005577 | Ga0068857_100007375 | Ga0068857_1000073755 | 518 |
| 194 | 3300009094 | Ga0111539_10051065 | Ga0111539_100510653 | 518 |
| 195 | 3300009098 | Ga0105245_10012837 | Ga0105245_100128372 | 518 |
| 196 | 3300010375 | Ga0105239_10163018 | Ga0105239_101630183 | 518 |
| 197 | 3300014745 | Ga0157377_10002778 | Ga0157377_100027783 | 518 |
| 198 | 3300025927 | Ga0207687_10007083 | Ga0207687_100070834 | 518 |
| 199 | 3300025942 | Ga0207689_10003284 | Ga0207689_1000328410 | 518 |
| 200 | 3300025944 | Ga0207661_10066216 | Ga0207661_100662162 | 518 |
| 201 | 3300026035 | Ga0207703_10043585 | Ga0207703_100435851 | 518 |
| 202 | 3300026067 | Ga0207678_10004191 | Ga0207678_100041913 | 518 |
| 203 | 3300026116 | Ga0207674_10004274 | Ga0207674_100042744 | 518 |
| 204 | 3300027907 | Ga0207428_10039344 | Ga0207428_100393443 | 518 |
| 205 | 3300050511 | nmdc:mga08y16_92368_c1 | nmdc:mga08y16_92368_c1_1486_3108 | 518 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 1m21-assembly2.cif.gz_B | crystal structure analysis of the peptide amidase pam in complex with the competitive inhibitor chymostatin | 0.9531 | 23 | 511 |
| 5ac3-assembly1.cif.gz_A | crystal structure of pam12a | 0.9512 | 23 | 518 |
| 1m21-assembly2.cif.gz_B | crystal structure analysis of the peptide amidase pam in complex with the competitive inhibitor chymostatin | 0.9416 | 23 | 511 |
| 1m22-assembly2.cif.gz_B | x-ray structure of native peptide amidase from stenotrophomonas maltophilia at 1.4 a | 0.9398 | 23 | 512 |
| 5ac3-assembly1.cif.gz_A | crystal structure of pam12a | 0.9398 | 23 | 518 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 1m22A00 | Alpha Beta;Alpha-Beta Complex;Amidase signature (AS) enzymes;Amidase signature (AS) domain | 0.9398 | 23 | 512 | 3.90.1300.10 |
| af_A0A1P8B760_22_510_3.90.1300.10 | Alpha Beta;Alpha-Beta Complex;Amidase signature (AS) enzymes;Amidase signature (AS) domain | 0.9396 | 9 | 511 | 3.90.1300.10 |
| af_A0A0P0WV09_96_533_3.90.1300.10 | Alpha Beta;Alpha-Beta Complex;Amidase signature (AS) enzymes;Amidase signature (AS) domain | 0.939 | 89 | 511 | 3.90.1300.10 |
| af_A0A0P0XRM7_54_372_3.90.1300.10 | Alpha Beta;Alpha-Beta Complex;Amidase signature (AS) enzymes;Amidase signature (AS) domain | 0.9294 | 14 | 316 | 3.90.1300.10 |
| 5ewqB00 | Alpha Beta;Alpha-Beta Complex;Amidase signature (AS) enzymes;Amidase signature (AS) domain | 0.9281 | 21 | 511 | 3.90.1300.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A4Q3RRN4-F1-model_v4 | Amidase (EC 3.5.1.4) | 0.9812 | 86 | 266 |
GO:0004040
|
| AF-A0A836VI75-F1-model_v4 | Amidase (EC 3.5.1.4) | 0.9751 | 34 | 183 |
GO:0016787
|
| AF-A0A4Q3U0X7-F1-model_v4 | Amidase (EC 3.5.1.4) | 0.9717 | 82 | 240 |
GO:0004040
|
| AF-A0A3B9LUU2-F1-model_v4 | Amidase (EC 3.5.1.4) | 0.9706 | 51 | 181 |
GO:0004040
|
| AF-A0A067EFN9-F1-model_v4 | Amidase domain-containing protein | 0.9705 | 19 | 377 |
|
Predicted Structure (AlphaFold2)
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