F313510

General Info

Members Datasets Scaffolds Average Seq Length
205 143 410 255

Family's Representative Sequence

Representative Sequence 3300005436|Ga0070713_100413230|Ga0070713_1004132302
Length 285
Sequence MSAESEIISNVRNSPDVHAVRAKRLTIWPPSPDALLWRIVRPVGMAALFLTLWGLAVRWSHTDLFPTPGNVVRGIVELGEKGLLLKYIVASLFRVTWGFTLALVLGIPFGLILGWYSRAFQAFNPLIQILRPISPIAWIPVAILWFGVSDAAPIFLIFLASVFPITVATIAAVQNMQPVYLRAAQNFGLGRWELFHRVIFRASLPQIITGVRIALGVAWLVVVAAEMIAVNSGLGYLIIDARNAGKRYDLVVAGMVMIGLIGLVLDLLVRQLEKLDAVRWGYARR

Samples

Sample ID Description Type Environment
1 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
11 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
12 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
25 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
26 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
27 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
31 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
35 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
38 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
41 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
42 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
43 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
44 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
45 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
46 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
70 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
71 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
72 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
73 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
74 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
75 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
76 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
77 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
78 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
79 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
80 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
81 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
82 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
83 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
84 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
85 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
86 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
87 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
88 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
89 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
90 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
91 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
92 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
93 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
94 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
95 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
96 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
97 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
98 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
99 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
100 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
101 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
102 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
103 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
104 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
105 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
106 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
107 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
108 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
109 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
110 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
111 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
112 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
113 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
114 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
124 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
125 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
126 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
127 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
128 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
129 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
130 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
131 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
132 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
133 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
134 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
135 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
136 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
137 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
138 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
139 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
140 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
141 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
142 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
143 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.51
Metatranscriptomes 0.49
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.46
Nodule 0
Rhizoplane 0.98
Rhizosphere 88.78
Stem 0
Stem Tuber 0
Unclassified 2.44

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070713_100413230 3300005436 Unclassified 1262
2 rootH2_10061519 3300003320 Bacteria 4297
3 rootL2_10044118 3300003322 Bacteria 4865
4 rootL2_10063371 3300003322 Bacteria 3274
5 Ga0070658_10062373 3300005327 Bacteria 3038
6 Ga0070658_10179687 3300005327 Bacteria 1780
7 Ga0070658_10186564 3300005327 Bacteria 1747
8 Ga0070683_100328053 3300005329 Bacteria 1457
9 Ga0070683_100428110 3300005329 Bacteria 1263
10 Ga0070690_100118759 3300005330 Bacteria 1773
11 Ga0070680_100079268 3300005336 Bacteria 2707
12 Ga0070680_100517905 3300005336 Bacteria 1021
13 Ga0070675_100000012 3300005354 Bacteria 217352
14 Ga0070671_100072842 3300005355 Bacteria 2869
15 Ga0070709_10033100 3300005434 Bacteria 3122
16 Ga0070709_10036987 3300005434 Bacteria 2978
17 Ga0070708_100065034 3300005445 Bacteria 3269
18 Ga0070708_100095212 3300005445 Bacteria 2718
19 Ga0070708_100098601 3300005445 Bacteria 2672
20 Ga0070708_100194581 3300005445 Bacteria 1897
21 Ga0070708_100488654 3300005445 Bacteria 1161
22 Ga0070663_100000889 3300005455 Bacteria 16234
23 Ga0070681_10078885 3300005458 Bacteria 3249
24 Ga0070706_100001254 3300005467 Bacteria 27153
25 Ga0070706_100008056 3300005467 Bacteria 9830
26 Ga0070706_100011261 3300005467 Bacteria 8307
27 Ga0070706_100021110 3300005467 Bacteria 5996
28 Ga0070706_100064445 3300005467 Bacteria 3387
29 Ga0070707_100021980 3300005468 Bacteria 6031
30 Ga0070707_100087010 3300005468 Bacteria 3022
31 Ga0070698_100000038 3300005471 Bacteria 92302
32 Ga0070698_100008775 3300005471 Bacteria 10882
33 Ga0070698_100269596 3300005471 Bacteria 1634
34 Ga0070699_100043064 3300005518 Bacteria 3908
35 Ga0070699_100070787 3300005518 Bacteria 3032
36 Ga0070699_100180502 3300005518 Bacteria 1873
37 Ga0070679_100038668 3300005530 Bacteria 4743
38 Ga0070697_100006411 3300005536 Bacteria 9108
39 Ga0070697_100012255 3300005536 Bacteria 6715
40 Ga0070697_100020816 3300005536 Bacteria 5193
41 Ga0070697_100044263 3300005536 Bacteria 3605
42 Ga0068856_100088639 3300005614 Bacteria 3077
43 Ga0068856_100360351 3300005614 Bacteria 1473
44 Ga0068852_100026405 3300005616 Bacteria 4720
45 Ga0068861_100115467 3300005719 Bacteria 2157
46 Ga0070717_10082173 3300006028 Bacteria 2707
47 Ga0070716_100047779 3300006173 Bacteria 2416
48 Ga0070712_100249703 3300006175 Bacteria 1417
49 Ga0075431_100003760 3300006847 Bacteria 14752
50 Ga0075435_100162001 3300007076 Bacteria 1884
51 Ga0105240_10607719 3300009093 Bacteria 1203
52 Ga0111539_10000017 3300009094 Bacteria 275456
53 Ga0105247_10022904 3300009101 Bacteria 3761
54 Ga0114129_10108691 3300009147 Bacteria 3828
55 Ga0105242_10097031 3300009176 Bacteria 2491
56 Ga0105237_10053264 3300009545 Bacteria 4059
57 Ga0105239_10072134 3300010375 Bacteria 3795
58 Ga0157370_10006236 3300013104 Bacteria 13207
59 Ga0157370_10009902 3300013104 Bacteria 10101
60 Ga0157369_10039125 3300013105 Bacteria 5184
61 Ga0157369_10292938 3300013105 Unclassified 1694
62 Ga0157374_10159568 3300013296 Bacteria 2196
63 Ga0157378_10039479 3300013297 Bacteria 4187
64 Ga0157372_10022558 3300013307 Bacteria 6813
65 Ga0157372_10060677 3300013307 Bacteria 4231
66 Ga0157377_10365772 3300014745 Bacteria 972
67 Ga0157379_10008597 3300014968 Bacteria 8886
68 Ga0157376_10071603 3300014969 Bacteria 2947
69 Ga0213872_10004285 3300021361 Bacteria 7632
70 Ga0213872_10042089 3300021361 Bacteria 2083
71 Ga0213874_10005962 3300021377 Unclassified 2863
72 Ga0213876_10001411 3300021384 Bacteria 14973
73 Ga0213876_10029958 3300021384 Bacteria 2869
74 Ga0213876_10048139 3300021384 Bacteria 2253
75 Ga0213876_10104656 3300021384 Bacteria 1501
76 Ga0207699_10047014 3300025906 Bacteria 2528
77 Ga0207699_10297663 3300025906 Bacteria 1126
78 Ga0207705_10016264 3300025909 Bacteria 5335
79 Ga0207705_10036354 3300025909 Bacteria 3525
80 Ga0207705_10085944 3300025909 Bacteria 2298
81 Ga0207684_10002024 3300025910 Bacteria 20876
82 Ga0207684_10003192 3300025910 Bacteria 16087
83 Ga0207684_10019227 3300025910 Bacteria 5844
84 Ga0207684_10054629 3300025910 Bacteria 3389
85 Ga0207693_10249105 3300025915 Bacteria 1394
86 Ga0207660_10030093 3300025917 Bacteria 3730
87 Ga0207662_10266206 3300025918 Bacteria 1130
88 Ga0207646_10016661 3300025922 Bacteria 6892
89 Ga0207646_10071196 3300025922 Bacteria 3105
90 Ga0207681_10000016 3300025923 Bacteria 345352
91 Ga0207694_10032888 3300025924 Bacteria 3972
92 Ga0207659_10000003 3300025926 Bacteria 523949
93 Ga0207700_10396103 3300025928 Bacteria 1209
94 Ga0207644_10078382 3300025931 Bacteria 2435
95 Ga0207686_10041614 3300025934 Bacteria 2803
96 Ga0207704_10319656 3300025938 Bacteria 1197
97 Ga0207665_10079903 3300025939 Bacteria 2249
98 Ga0207711_10000028 3300025941 Bacteria 214107
99 Ga0207667_10322880 3300025949 Bacteria 1576
100 Ga0207658_10017641 3300025986 Bacteria 4922
101 Ga0207678_10000156 3300026067 Bacteria 56308
102 Ga0207702_10157836 3300026078 Bacteria 2069
103 Ga0207702_10255853 3300026078 Bacteria 1646
104 Ga0207675_100152545 3300026118 Bacteria 2200
105 Ga0207698_10075753 3300026142 Bacteria 2690
106 Ga0268265_10000262 3300028380 Bacteria 59873
107 Ga0265338_10140616 3300028800 Bacteria 1891
108 Ga0265762_1000692 3300030760 Bacteria 5953
109 Ga0265328_10018197 3300031239 Bacteria 2713
110 Ga0265320_10034885 3300031240 Bacteria 2554
111 Ga0265325_10005114 3300031241 Bacteria 8161
112 Ga0265331_10018404 3300031250 Bacteria 3624
113 Ga0265316_10027542 3300031344 Bacteria 4704
114 Ga0307509_10005629 3300031507 Bacteria 17329
115 Ga0265313_10014655 3300031595 Bacteria 4618
116 Ga0307508_10037326 3300031616 Bacteria 4371
117 Ga0265314_10209886 3300031711 Bacteria 1144
118 Ga0265342_10004288 3300031712 Bacteria 11297
119 Ga0373936_0119667 3300035113 Bacteria 1124
120 Ga0373941_0085598 3300035115 Bacteria 1072
121 Ga0373945_0016480 3300035116 Bacteria 2493
122 Ga0373956_0114693 3300035119 Bacteria 1256
123 Ga0373943_0027899 3300035170 Bacteria 2657
124 Ga0373955_0068958 3300035172 Bacteria 1972
125 Ga0373955_0103433 3300035172 Bacteria 1638
126 Ga0373961_0001027 3300035241 Bacteria 9088
127 Ga0373924_0083178 3300035410 Bacteria 1363
128 Ga0373935_0002899 3300035692 Bacteria 9875
129 Ga0373935_0025993 3300035692 Bacteria 3609
130 Ga0373935_0242649 3300035692 Bacteria 1258
131 Ga0373947_0151907 3300035725 Bacteria 1492
132 Ga0373925_0026776 3300037068 Bacteria 4221
133 Ga0436364_1134494 3300037853 Bacteria 1180
134 Ga0436364_1386291 3300037853 Bacteria 20302
135 Ga0436365_0047633 3300039437 Bacteria 3344
136 Ga0436365_0165320 3300039437 Bacteria 4598
137 Ga0436365_0990564 3300039437 Bacteria 4350
138 Ga0436365_1205620 3300039437 Bacteria 20343
139 Ga0436360_0433936 3300039438 Bacteria 1686
140 Ga0436360_0547908 3300039438 Bacteria 1215
141 Ga0436360_0926388 3300039438 Bacteria 1487
142 Ga0436361_0054993 3300039447 Bacteria 2123
143 Ga0436361_0416595 3300039447 Bacteria 47178
144 Ga0436361_0894967 3300039447 Bacteria 1443
145 Ga0436363_0529063 3300039450 Bacteria 3630
146 Ga0436363_1143727 3300039450 Bacteria 22303
147 Ga0451807_2354375 3300041486 Bacteria 2271
148 Ga0451577_0015861 3300042876 Bacteria 6990
149 Ga0466963_0345456 3300044694 Unclassified 1048
150 Ga0453684_0364274 3300044712 Bacteria 1627
151 Ga0495603_0084557 3300046455 Bacteria 1858
152 Ga0495651_0139881 3300046462 Bacteria 1757
153 Ga0495650_0090066 3300046471 Bacteria 1168
154 Ga0495580_0006715 3300046472 Bacteria 9340
155 Ga0495620_0001152 3300046515 Bacteria 16190
156 Ga0495630_0224414 3300046517 Unclassified 1435
157 Ga0495652_0293198 3300046529 Bacteria 1186
158 Ga0495623_0034395 3300046679 Bacteria 3250
159 Ga0495646_0212214 3300046680 Bacteria 1050
160 Ga0495647_0012760 3300046681 Bacteria 2899
161 Ga0495647_0015807 3300046681 Bacteria 2648
162 Ga0495674_0144454 3300047319 Bacteria 1998
163 Ga0495602_0073594 3300048088 Bacteria 2908
164 Ga0496114_0000055 3300048917 Bacteria 96533
165 Ga0501032_0000245 3300049569 Bacteria 45098
166 Ga0501032_0007510 3300049569 Bacteria 7963
167 Ga0501033_0000002 3300049570 Bacteria 668574
168 Ga0501033_0023506 3300049570 Bacteria 4647
169 Ga0501036_0000245 3300049572 Bacteria 36628
170 Ga0501037_0001121 3300049573 Bacteria 19908
171 Ga0501038_0000020 3300049574 Bacteria 152738
172 Ga0501038_0002297 3300049574 Bacteria 17781
173 Ga0501039_0000958 3300049575 Bacteria 21021
174 Ga0501043_0001860 3300049579 Bacteria 18070
175 Ga0501046_0000976 3300049580 Bacteria 28016
176 Ga0501048_0035132 3300049582 Bacteria 3609
177 Ga0501067_0001828 3300049583 Bacteria 11687
178 Ga0501067_0019522 3300049583 Bacteria 3754
179 Ga0501067_0057814 3300049583 Bacteria 2147
180 Ga0501068_0004301 3300049584 Bacteria 7731
181 Ga0501068_0038913 3300049584 Bacteria 2850
182 Ga0501069_0038808 3300049585 Bacteria 2629
183 Ga0501070_0088424 3300049586 Bacteria 2564
184 Ga0501070_0167649 3300049586 Bacteria 1809
185 Ga0501072_0001883 3300049588 Bacteria 15625
186 Ga0501073_0007296 3300049589 Bacteria 8226
187 Ga0501074_0046646 3300049590 Bacteria 3132
188 Ga0501075_0000365 3300049591 Bacteria 25926
189 Ga0501077_0002125 3300049593 Bacteria 11963
190 Ga0501079_0000799 3300049741 Bacteria 21448
191 Ga0501080_0018604 3300049742 Bacteria 6429
192 Ga0501080_0023512 3300049742 Bacteria 5711
193 Ga0501083_0001308 3300049744 Bacteria 16863
194 Ga0501083_0012999 3300049744 Bacteria 5817
195 Ga0501044_0001670 3300049823 Bacteria 26059
196 Ga0501044_0009253 3300049823 Bacteria 10759
197 nmdc:mga06r32_5350_c1 3300050510 Bacteria 11559
198 nmdc:mga08y16_15_c1 3300050511 Bacteria 397324
199 nmdc:mga0rr50_143164_c1 3300050513 Bacteria 1925
200 Ga0500658_0115006 3300053134 Bacteria 1188
201 Ga0500568_0025956 3300053139 Bacteria 2463
202 Ga0500616_0007783 3300053153 Bacteria 6757
203 Ga0501084_0000929 3300054114 Bacteria 22672
204 Ga0501082_0000017 3300060353 Bacteria 114702
205 Ga0501082_0011740 3300060353 Bacteria 7530
206 Ga0070713_100413230
207 rootH2_10061519
208 rootL2_10044118
209 rootL2_10063371
210 Ga0070658_10062373
211 Ga0070658_10179687
212 Ga0070658_10186564
213 Ga0070683_100328053
214 Ga0070683_100428110
215 Ga0070690_100118759
216 Ga0070680_100079268
217 Ga0070680_100517905
218 Ga0070675_100000012
219 Ga0070671_100072842
220 Ga0070709_10033100
221 Ga0070709_10036987
222 Ga0070708_100065034
223 Ga0070708_100095212
224 Ga0070708_100098601
225 Ga0070708_100194581
226 Ga0070708_100488654
227 Ga0070663_100000889
228 Ga0070681_10078885
229 Ga0070706_100001254
230 Ga0070706_100008056
231 Ga0070706_100011261
232 Ga0070706_100021110
233 Ga0070706_100064445
234 Ga0070707_100021980
235 Ga0070707_100087010
236 Ga0070698_100000038
237 Ga0070698_100008775
238 Ga0070698_100269596
239 Ga0070699_100043064
240 Ga0070699_100070787
241 Ga0070699_100180502
242 Ga0070679_100038668
243 Ga0070697_100006411
244 Ga0070697_100012255
245 Ga0070697_100020816
246 Ga0070697_100044263
247 Ga0068856_100088639
248 Ga0068856_100360351
249 Ga0068852_100026405
250 Ga0068861_100115467
251 Ga0070717_10082173
252 Ga0070716_100047779
253 Ga0070712_100249703
254 Ga0075431_100003760
255 Ga0075435_100162001
256 Ga0105240_10607719
257 Ga0111539_10000017
258 Ga0105247_10022904
259 Ga0114129_10108691
260 Ga0105242_10097031
261 Ga0105237_10053264
262 Ga0105239_10072134
263 Ga0157370_10006236
264 Ga0157370_10009902
265 Ga0157369_10039125
266 Ga0157369_10292938
267 Ga0157374_10159568
268 Ga0157378_10039479
269 Ga0157372_10022558
270 Ga0157372_10060677
271 Ga0157377_10365772
272 Ga0157379_10008597
273 Ga0157376_10071603
274 Ga0213872_10004285
275 Ga0213872_10042089
276 Ga0213874_10005962
277 Ga0213876_10001411
278 Ga0213876_10029958
279 Ga0213876_10048139
280 Ga0213876_10104656
281 Ga0207699_10047014
282 Ga0207699_10297663
283 Ga0207705_10016264
284 Ga0207705_10036354
285 Ga0207705_10085944
286 Ga0207684_10002024
287 Ga0207684_10003192
288 Ga0207684_10019227
289 Ga0207684_10054629
290 Ga0207693_10249105
291 Ga0207660_10030093
292 Ga0207662_10266206
293 Ga0207646_10016661
294 Ga0207646_10071196
295 Ga0207681_10000016
296 Ga0207694_10032888
297 Ga0207659_10000003
298 Ga0207700_10396103
299 Ga0207644_10078382
300 Ga0207686_10041614
301 Ga0207704_10319656
302 Ga0207665_10079903
303 Ga0207711_10000028
304 Ga0207667_10322880
305 Ga0207658_10017641
306 Ga0207678_10000156
307 Ga0207702_10157836
308 Ga0207702_10255853
309 Ga0207675_100152545
310 Ga0207698_10075753
311 Ga0268265_10000262
312 Ga0265338_10140616
313 Ga0265762_1000692
314 Ga0265328_10018197
315 Ga0265320_10034885
316 Ga0265325_10005114
317 Ga0265331_10018404
318 Ga0265316_10027542
319 Ga0307509_10005629
320 Ga0265313_10014655
321 Ga0307508_10037326
322 Ga0265314_10209886
323 Ga0265342_10004288
324 Ga0373936_0119667
325 Ga0373941_0085598
326 Ga0373945_0016480
327 Ga0373956_0114693
328 Ga0373943_0027899
329 Ga0373955_0068958
330 Ga0373955_0103433
331 Ga0373961_0001027
332 Ga0373924_0083178
333 Ga0373935_0002899
334 Ga0373935_0025993
335 Ga0373935_0242649
336 Ga0373947_0151907
337 Ga0373925_0026776
338 Ga0436364_1134494
339 Ga0436364_1386291
340 Ga0436365_0047633
341 Ga0436365_0165320
342 Ga0436365_0990564
343 Ga0436365_1205620
344 Ga0436360_0433936
345 Ga0436360_0547908
346 Ga0436360_0926388
347 Ga0436361_0054993
348 Ga0436361_0416595
349 Ga0436361_0894967
350 Ga0436363_0529063
351 Ga0436363_1143727
352 Ga0451807_2354375
353 Ga0451577_0015861
354 Ga0466963_0345456
355 Ga0453684_0364274
356 Ga0495603_0084557
357 Ga0495651_0139881
358 Ga0495650_0090066
359 Ga0495580_0006715
360 Ga0495620_0001152
361 Ga0495630_0224414
362 Ga0495652_0293198
363 Ga0495623_0034395
364 Ga0495646_0212214
365 Ga0495647_0012760
366 Ga0495647_0015807
367 Ga0495674_0144454
368 Ga0495602_0073594
369 Ga0496114_0000055
370 Ga0501032_0000245
371 Ga0501032_0007510
372 Ga0501033_0000002
373 Ga0501033_0023506
374 Ga0501036_0000245
375 Ga0501037_0001121
376 Ga0501038_0000020
377 Ga0501038_0002297
378 Ga0501039_0000958
379 Ga0501043_0001860
380 Ga0501046_0000976
381 Ga0501048_0035132
382 Ga0501067_0001828
383 Ga0501067_0019522
384 Ga0501067_0057814
385 Ga0501068_0004301
386 Ga0501068_0038913
387 Ga0501069_0038808
388 Ga0501070_0088424
389 Ga0501070_0167649
390 Ga0501072_0001883
391 Ga0501073_0007296
392 Ga0501074_0046646
393 Ga0501075_0000365
394 Ga0501077_0002125
395 Ga0501079_0000799
396 Ga0501080_0018604
397 Ga0501080_0023512
398 Ga0501083_0001308
399 Ga0501083_0012999
400 Ga0501044_0001670
401 Ga0501044_0009253
402 nmdc:mga06r32_5350_c1
403 nmdc:mga08y16_15_c1
404 nmdc:mga0rr50_143164_c1
405 Ga0500658_0115006
406 Ga0500568_0025956
407 Ga0500616_0007783
408 Ga0501084_0000929
409 Ga0501082_0000017
410 Ga0501082_0011740

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00528

BPD_transp_1

Binding-protein-dependent transport system inner membrane component

106

275

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3tui-assembly2.cif.gz_E inward facing conformations of the metni methionine abc transporter: cy5 native crystal form 0.8355 47 240
7ahh-assembly1.cif.gz_B opua inhibited inward-facing, sbd docked 0.7931 16 240
3dhw-assembly2.cif.gz_E crystal structure of methionine importer metni 0.7925 51 238
7ahc-assembly1.cif.gz_B opua apo inward-facing 0.7904 16 240
3tuz-assembly2.cif.gz_F inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form 0.7771 51 251
ID Description Score Start End Superfamily
af_P75851_53_247_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9705 48 242 1.10.3720.10
af_Q47539_71_268_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9678 52 242 1.10.3720.10
af_Q2G1I4_54_251_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9633 51 247 1.10.3720.10
af_Q57856_64_258_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9609 51 241 1.10.3720.10
af_P75851_53_247_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9608 48 242 1.10.3720.10
ID Description Score Start End GO Terms
AF-A0A7W1KPL8-F1-model_v4 ABC transporter permease 0.9824 9 255 GO:0005886
GO:0055085
AF-A0A7Y9PDT5-F1-model_v4 NitT/TauT family transport system permease protein 0.9824 8 248 GO:0005886
GO:0055085
AF-A0A7Y5USA2-F1-model_v4 ABC transporter permease 0.9803 31 249 GO:0005886
GO:0055085
AF-A0A7W0Y6I0-F1-model_v4 ABC transporter permease 0.9727 9 251 GO:0005886
GO:0055085
AF-A0A2E7CHW4-F1-model_v4 Taurine ABC transporter permease 0.972 10 242 GO:0005886
GO:0055085

Map