F313303

General Info

Members Datasets Scaffolds Average Seq Length
205 151 410 255

Family's Representative Sequence

Representative Sequence 3300003322|rootL2_10268302|rootL2_102683021
Length 285
Sequence MLTEDQKAFYRENGYVLVTGLITPEEAADYRREIHDLRERRNTVWSHDSTWGSARSLGGARPTALFGCHDVQFHSSAFARLIVDERLTSVASDIIGPNVQLHHTKAFVKPPEKGSPFPLHQDAPFFPHERHSMIAVILHFDDAPLEKGCVRVVPGSHKNGLMPHLPDGGWHLDPAQYPVESALPIPAKAGDALFFSYLTIHGSGINESQEARTTLLLQMRDPTDPPSIRTHESRGQGMMLAGIDPSCATTKPLSDNHADNPTPRVGKPVDGEITMGGAMAPPGGQ

Samples

Sample ID Description Type Environment
1 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300004803 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
15 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
16 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
17 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
18 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
19 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
20 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
21 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
22 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
23 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
24 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
32 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
33 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
34 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
41 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
42 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
43 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
44 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
47 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
48 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
49 3300020075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
50 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
51 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
52 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
53 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
79 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
81 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
82 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
83 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
84 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
85 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
86 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
87 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
88 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
89 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
90 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
91 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
92 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
93 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
94 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
95 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
96 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
97 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
98 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
99 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
100 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
101 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
102 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
103 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
104 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
105 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
106 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
107 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
108 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
109 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
110 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
111 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
112 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
113 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
114 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
115 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
116 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
117 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
118 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
119 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
120 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
121 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
122 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
123 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
124 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
127 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
128 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
129 3300049674 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_A_3_drought Metagenome Rhizosphere
130 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
131 3300049690 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_A_4_drought Metagenome Rhizosphere
132 3300049767 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A15_B_4_drought Metagenome Rhizosphere
133 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
134 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
135 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
136 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
137 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
138 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
139 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
140 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
141 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
142 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
143 2515154155 Actinopolymorpha alba DSM 45243 Isolate Rhizosphere
144 2675903058 Actinopolymorpha cephalotaxi CPCC 202808 Isolate Rhizosphere
145 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
146 2827628540 Actinopolymorpha cephalotaxi DSM 45117 Isolate Rhizosphere
147 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
148 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
149 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
150 8055066027 Sphaerisporangium corydalis NEAU-YHS15 Isolate Unclassified
151 8055172936 Sphaerisporangium perillae NEAU-ZS1 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 93.66
Metatranscriptomes 1.95
Isolates 4.39

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.98
Nodule 0
Rhizoplane 6.34
Rhizosphere 83.9
Stem 0
Stem Tuber 0
Unclassified 14.15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10268302 3300003322 Bacteria 1655
2 rootH1_10303586 3300003323 Bacteria 1427
3 Ga0058862_12006900 3300004803 Unclassified 1074
4 Ga0070658_10000222 3300005327 Bacteria 50536
5 Ga0070658_10003755 3300005327 Bacteria 12428
6 Ga0070677_10126993 3300005333 Bacteria 1159
7 Ga0070660_100051293 3300005339 Unclassified 3177
8 Ga0070689_100384333 3300005340 Unclassified 1184
9 Ga0070668_100005699 3300005347 Bacteria 9232
10 Ga0070669_100016760 3300005353 Bacteria 5229
11 Ga0070659_100031928 3300005366 Bacteria 4082
12 Ga0070709_10117177 3300005434 Unclassified 1799
13 Ga0070714_100003772 3300005435 Bacteria 11370
14 Ga0070714_100285189 3300005435 Bacteria 1535
15 Ga0070711_100398509 3300005439 Unclassified 1117
16 Ga0070700_100047096 3300005441 Bacteria 2667
17 Ga0070708_100009534 3300005445 Bacteria 7829
18 Ga0070708_100028030 3300005445 Bacteria 4842
19 Ga0070678_100303776 3300005456 Bacteria 1357
20 Ga0070662_100002220 3300005457 Bacteria 11921
21 Ga0070685_10053703 3300005466 Bacteria 2335
22 Ga0070706_100006467 3300005467 Bacteria 11060
23 Ga0070707_100001141 3300005468 Bacteria 26133
24 Ga0070707_100142030 3300005468 Bacteria 2336
25 Ga0070698_100021438 3300005471 Bacteria 6768
26 Ga0070698_100056191 3300005471 Unclassified 3989
27 Ga0070699_100001552 3300005518 Bacteria 21014
28 Ga0070679_100297797 3300005530 Bacteria 1564
29 Ga0070697_100008974 3300005536 Bacteria 7814
30 Ga0068855_100005708 3300005563 Bacteria 15201
31 Ga0068855_100149299 3300005563 Bacteria 2658
32 Ga0068855_100153713 3300005563 Bacteria 2615
33 Ga0068857_100018030 3300005577 Bacteria 6193
34 Ga0068852_100148639 3300005616 Unclassified 2176
35 Ga0068864_100333730 3300005618 Bacteria 1427
36 Ga0068861_100000112 3300005719 Bacteria 41046
37 Ga0068862_100000896 3300005844 Bacteria 28924
38 Ga0070717_10030242 3300006028 Unclassified 4351
39 Ga0070717_10195394 3300006028 Unclassified 1770
40 Ga0070716_100292629 3300006173 Unclassified 1129
41 Ga0075428_100016021 3300006844 Bacteria 8290
42 Ga0075430_100025628 3300006846 Bacteria 5018
43 Ga0075431_100000131 3300006847 Bacteria 50132
44 Ga0075431_100038158 3300006847 Bacteria 4946
45 Ga0075431_100673837 3300006847 Unclassified 1013
46 Ga0075429_100007713 3300006880 Bacteria 9341
47 Ga0075429_100017806 3300006880 Bacteria 6144
48 Ga0075429_100149512 3300006880 Bacteria 2045
49 Ga0105240_10000015 3300009093 Bacteria 457886
50 Ga0105240_10098853 3300009093 Bacteria 3553
51 Ga0111539_10062474 3300009094 Bacteria 4408
52 Ga0114129_10006655 3300009147 Bacteria 16408
53 Ga0114129_10260524 3300009147 Bacteria 2324
54 Ga0105243_10694966 3300009148 Unclassified 991
55 Ga0105237_10000741 3300009545 Bacteria 45032
56 Ga0105237_10241176 3300009545 Bacteria 1809
57 Ga0105238_10028579 3300009551 Bacteria 5680
58 Ga0105238_10041907 3300009551 Bacteria 4636
59 Ga0105249_10020940 3300009553 Bacteria 5849
60 Ga0105249_10195345 3300009553 Bacteria 1977
61 Ga0105239_10021411 3300010375 Bacteria 7127
62 Ga0105239_10035129 3300010375 Bacteria 5505
63 Ga0157369_10002550 3300013105 Bacteria 21798
64 Ga0157369_10595513 3300013105 Bacteria 1141
65 Ga0157375_10036715 3300013308 Bacteria 4690
66 Ga0157375_10123468 3300013308 Unclassified 2702
67 Ga0157380_10056947 3300014326 Bacteria 3111
68 Ga0206356_10475824 3300020070 Bacteria 1090
69 Ga0206349_1715019 3300020075 Bacteria 917
70 Ga0213873_10000006 3300021358 Bacteria 408723
71 Ga0213876_10000004 3300021384 Bacteria 943822
72 Ga0224712_10150346 3300022467 Bacteria 1031
73 Ga0207682_10048907 3300025893 Bacteria 1744
74 Ga0207692_10293059 3300025898 Unclassified 988
75 Ga0207705_10000657 3300025909 Bacteria 28802
76 Ga0207705_10010621 3300025909 Bacteria 6690
77 Ga0207695_10000054 3300025913 Bacteria 387391
78 Ga0207695_10450457 3300025913 Bacteria 1170
79 Ga0207671_10000627 3300025914 Bacteria 46460
80 Ga0207671_10161471 3300025914 Bacteria 1735
81 Ga0207693_10209675 3300025915 Unclassified 1531
82 Ga0207663_10375922 3300025916 Unclassified 1081
83 Ga0207662_10292748 3300025918 Bacteria 1080
84 Ga0207657_10034182 3300025919 Unclassified 4574
85 Ga0207652_10103535 3300025921 Bacteria 2517
86 Ga0207646_10001995 3300025922 Bacteria 24534
87 Ga0207646_10844236 3300025922 Unclassified 814
88 Ga0207681_10040767 3300025923 Bacteria 3091
89 Ga0207681_10087507 3300025923 Bacteria 2217
90 Ga0207694_10031441 3300025924 Bacteria 4055
91 Ga0207650_10302518 3300025925 Bacteria 1306
92 Ga0207664_10006309 3300025929 Bacteria 8149
93 Ga0207706_10014049 3300025933 Bacteria 7261
94 Ga0207670_10444238 3300025936 Unclassified 1044
95 Ga0207689_10089599 3300025942 Bacteria 2527
96 Ga0207667_10035575 3300025949 Bacteria 5342
97 Ga0207667_10122022 3300025949 Bacteria 2685
98 Ga0207667_10124753 3300025949 Bacteria 2652
99 Ga0207667_10168124 3300025949 Bacteria 2254
100 Ga0207668_10049965 3300025972 Bacteria 2878
101 Ga0207640_10072616 3300025981 Unclassified 2322
102 Ga0207708_10298534 3300026075 Bacteria 1310
103 Ga0207708_10367110 3300026075 Bacteria 1184
104 Ga0207676_10512255 3300026095 Bacteria 1141
105 Ga0207674_10012778 3300026116 Bacteria 9378
106 Ga0207675_100000046 3300026118 Bacteria 87216
107 Ga0207675_100214867 3300026118 Unclassified 1851
108 Ga0207428_10024248 3300027907 Bacteria 5096
109 Ga0268265_10001184 3300028380 Bacteria 22821
110 Ga0307517_10113557 3300028786 Bacteria 2044
111 Ga0307515_10057491 3300028794 Bacteria 5628
112 Ga0307512_10012824 3300030522 Bacteria 7886
113 Ga0307512_10113983 3300030522 Bacteria 1766
114 Ga0307408_100055947 3300031548 Bacteria 2859
115 Ga0307408_100223231 3300031548 Bacteria 1538
116 Ga0307508_10041371 3300031616 Bacteria 4136
117 Ga0307405_10018869 3300031731 Bacteria 3816
118 Ga0307413_10138216 3300031824 Bacteria 1679
119 Ga0307410_10000420 3300031852 Bacteria 16843
120 Ga0307406_10363555 3300031901 Bacteria 1135
121 Ga0307407_10206813 3300031903 Bacteria 1319
122 Ga0307412_10083213 3300031911 Bacteria 2218
123 Ga0307412_10159006 3300031911 Bacteria 1676
124 Ga0307409_100001028 3300031995 Bacteria 13074
125 Ga0307416_100027705 3300032002 Bacteria 4201
126 Ga0307416_100452893 3300032002 Bacteria 1336
127 Ga0307416_100677915 3300032002 Bacteria 1118
128 Ga0307414_10003404 3300032004 Bacteria 8491
129 Ga0307415_100071363 3300032126 Bacteria 2442
130 Ga0307415_100262453 3300032126 Bacteria 1410
131 Ga0307415_100287325 3300032126 Unclassified 1356
132 Ga0395900_0062163 3300037418 Bacteria 3838
133 Ga0395905_0064503 3300037471 Bacteria 3428
134 Ga0436365_0970858 3300039437 Bacteria 175279
135 Ga0436362_0554113 3300039453 Bacteria 162652
136 Ga0451789_0125177 3300041443 Bacteria 913
137 Ga0451791_0857290 3300041451 Bacteria 1760
138 Ga0451793_1180929 3300041452 Bacteria 931
139 Ga0451833_0771893 3300041491 Bacteria 3961
140 Ga0451837_0457823 3300041494 Bacteria 1137
141 Ga0451839_0360837 3300041496 Bacteria 1725
142 Ga0451841_1182621 3300041498 Bacteria 2146
143 Ga0451849_1179968 3300041505 Bacteria 1019
144 Ga0451843_0599100 3300041509 Bacteria 1865
145 Ga0439459_0047710 3300042438 Unclassified 931
146 Ga0466966_0002010 3300044684 Bacteria 13203
147 Ga0466957_0096151 3300044842 Unclassified 1861
148 Ga0466957_0262945 3300044842 Bacteria 1150
149 Ga0466957_0308572 3300044842 Bacteria 1065
150 Ga0466957_0362955 3300044842 Bacteria 985
151 Ga0466959_0002427 3300045049 Bacteria 11910
152 Ga0451576_0123001 3300045051 Bacteria 2702
153 Ga0466958_0023883 3300045836 Bacteria 3594
154 Ga0466958_0076998 3300045836 Bacteria 2048
155 Ga0466967_0067107 3300045976 Bacteria 3199
156 Ga0466967_0133101 3300045976 Bacteria 2310
157 Ga0466967_0300205 3300045976 Bacteria 1545
158 Ga0466967_0427597 3300045976 Bacteria 1292
159 Ga0495683_0000659 3300047323 Bacteria 25543
160 Ga0496104_0207379 3300048907 Bacteria 1872
161 Ga0496108_0030142 3300048911 Bacteria 4497
162 Ga0496109_0225840 3300048912 Bacteria 1761
163 Ga0496110_0082563 3300048913 Bacteria 2866
164 Ga0496110_0377511 3300048913 Unclassified 1292
165 Ga0496111_0114029 3300048914 Bacteria 1992
166 Ga0496112_0059595 3300048915 Bacteria 3762
167 Ga0496112_0185105 3300048915 Bacteria 2046
168 Ga0496113_0151841 3300048916 Bacteria 1828
169 Ga0496115_0151156 3300048918 Bacteria 1917
170 Ga0501037_0047925 3300049573 Bacteria 3131
171 Ga0501047_0252156 3300049581 Bacteria 1613
172 Ga0501067_0187068 3300049583 Bacteria 1153
173 Ga0501073_0413335 3300049589 Unclassified 932
174 Ga0501076_0168660 3300049592 Unclassified 1784
175 Ga0501242_012417 3300049674 Bacteria 1037
176 Ga0501249_039737 3300049679 Bacteria 1064
177 Ga0501261_030211 3300049690 Bacteria 817
178 Ga0501270_020453 3300049767 Bacteria 1003
179 Ga0501044_0003374 3300049823 Bacteria 18007
180 nmdc:mga05p37_3339_c1 3300050507 Bacteria 16107
181 nmdc:mga05p37_5818_c2 3300050507 Bacteria 7570
182 nmdc:mga09592_15578_c1 3300050508 Bacteria 6213
183 nmdc:mga09592_25126_c1 3300050508 Bacteria 4928
184 nmdc:mga09592_30768_c1 3300050508 Bacteria 4468
185 nmdc:mga09592_46395_c1 3300050508 Bacteria 3661
186 nmdc:mga0qj67_103695_c1 3300050509 Bacteria 2295
187 nmdc:mga0qj67_165273_c1 3300050509 Unclassified 1796
188 nmdc:mga0qj67_922_c1 3300050509 Bacteria 20234
189 nmdc:mga06r32_38509_c1 3300050510 Bacteria 4531
190 nmdc:mga06r32_59_c1 3300050510 Bacteria 70317
191 nmdc:mga08y16_35730_c1 3300050511 Bacteria 5219
192 Ga0500641_0041167 3300053096 Bacteria 1869
193 Ga0500562_014506 3300053108 Bacteria 2017
194 Ga0590075_007378 3300059424 Bacteria 2611
195 Ga0501082_0213256 3300060353 Bacteria 1680
196 Ga0501082_0369134 3300060353 Unclassified 1252
197 2515853501 2515154155 Bacteria 7985436
198 2676476272 2675903058 Bacteria 6822861
199 2819745261 2818991472 Bacteria 10089953
200 2827634103 2827628540 Bacteria 6858585
201 2888580198 2888578766 Bacteria 6743310
202 2889051145 2889049205 Bacteria 7524325
203 2904118586 2904113452 Bacteria 7796941
204 8055068488 8055066027 Bacteria 9479577
205 8055179852 8055172936 Bacteria 9305943
206 rootL2_10268302
207 rootH1_10303586
208 Ga0058862_12006900
209 Ga0070658_10000222
210 Ga0070658_10003755
211 Ga0070677_10126993
212 Ga0070660_100051293
213 Ga0070689_100384333
214 Ga0070668_100005699
215 Ga0070669_100016760
216 Ga0070659_100031928
217 Ga0070709_10117177
218 Ga0070714_100003772
219 Ga0070714_100285189
220 Ga0070711_100398509
221 Ga0070700_100047096
222 Ga0070708_100009534
223 Ga0070708_100028030
224 Ga0070678_100303776
225 Ga0070662_100002220
226 Ga0070685_10053703
227 Ga0070706_100006467
228 Ga0070707_100001141
229 Ga0070707_100142030
230 Ga0070698_100021438
231 Ga0070698_100056191
232 Ga0070699_100001552
233 Ga0070679_100297797
234 Ga0070697_100008974
235 Ga0068855_100005708
236 Ga0068855_100149299
237 Ga0068855_100153713
238 Ga0068857_100018030
239 Ga0068852_100148639
240 Ga0068864_100333730
241 Ga0068861_100000112
242 Ga0068862_100000896
243 Ga0070717_10030242
244 Ga0070717_10195394
245 Ga0070716_100292629
246 Ga0075428_100016021
247 Ga0075430_100025628
248 Ga0075431_100000131
249 Ga0075431_100038158
250 Ga0075431_100673837
251 Ga0075429_100007713
252 Ga0075429_100017806
253 Ga0075429_100149512
254 Ga0105240_10000015
255 Ga0105240_10098853
256 Ga0111539_10062474
257 Ga0114129_10006655
258 Ga0114129_10260524
259 Ga0105243_10694966
260 Ga0105237_10000741
261 Ga0105237_10241176
262 Ga0105238_10028579
263 Ga0105238_10041907
264 Ga0105249_10020940
265 Ga0105249_10195345
266 Ga0105239_10021411
267 Ga0105239_10035129
268 Ga0157369_10002550
269 Ga0157369_10595513
270 Ga0157375_10036715
271 Ga0157375_10123468
272 Ga0157380_10056947
273 Ga0206356_10475824
274 Ga0206349_1715019
275 Ga0213873_10000006
276 Ga0213876_10000004
277 Ga0224712_10150346
278 Ga0207682_10048907
279 Ga0207692_10293059
280 Ga0207705_10000657
281 Ga0207705_10010621
282 Ga0207695_10000054
283 Ga0207695_10450457
284 Ga0207671_10000627
285 Ga0207671_10161471
286 Ga0207693_10209675
287 Ga0207663_10375922
288 Ga0207662_10292748
289 Ga0207657_10034182
290 Ga0207652_10103535
291 Ga0207646_10001995
292 Ga0207646_10844236
293 Ga0207681_10040767
294 Ga0207681_10087507
295 Ga0207694_10031441
296 Ga0207650_10302518
297 Ga0207664_10006309
298 Ga0207706_10014049
299 Ga0207670_10444238
300 Ga0207689_10089599
301 Ga0207667_10035575
302 Ga0207667_10122022
303 Ga0207667_10124753
304 Ga0207667_10168124
305 Ga0207668_10049965
306 Ga0207640_10072616
307 Ga0207708_10298534
308 Ga0207708_10367110
309 Ga0207676_10512255
310 Ga0207674_10012778
311 Ga0207675_100000046
312 Ga0207675_100214867
313 Ga0207428_10024248
314 Ga0268265_10001184
315 Ga0307517_10113557
316 Ga0307515_10057491
317 Ga0307512_10012824
318 Ga0307512_10113983
319 Ga0307408_100055947
320 Ga0307408_100223231
321 Ga0307508_10041371
322 Ga0307405_10018869
323 Ga0307413_10138216
324 Ga0307410_10000420
325 Ga0307406_10363555
326 Ga0307407_10206813
327 Ga0307412_10083213
328 Ga0307412_10159006
329 Ga0307409_100001028
330 Ga0307416_100027705
331 Ga0307416_100452893
332 Ga0307416_100677915
333 Ga0307414_10003404
334 Ga0307415_100071363
335 Ga0307415_100262453
336 Ga0307415_100287325
337 Ga0395900_0062163
338 Ga0395905_0064503
339 Ga0436365_0970858
340 Ga0436362_0554113
341 Ga0451789_0125177
342 Ga0451791_0857290
343 Ga0451793_1180929
344 Ga0451833_0771893
345 Ga0451837_0457823
346 Ga0451839_0360837
347 Ga0451841_1182621
348 Ga0451849_1179968
349 Ga0451843_0599100
350 Ga0439459_0047710
351 Ga0466966_0002010
352 Ga0466957_0096151
353 Ga0466957_0262945
354 Ga0466957_0308572
355 Ga0466957_0362955
356 Ga0466959_0002427
357 Ga0451576_0123001
358 Ga0466958_0023883
359 Ga0466958_0076998
360 Ga0466967_0067107
361 Ga0466967_0133101
362 Ga0466967_0300205
363 Ga0466967_0427597
364 Ga0495683_0000659
365 Ga0496104_0207379
366 Ga0496108_0030142
367 Ga0496109_0225840
368 Ga0496110_0082563
369 Ga0496110_0377511
370 Ga0496111_0114029
371 Ga0496112_0059595
372 Ga0496112_0185105
373 Ga0496113_0151841
374 Ga0496115_0151156
375 Ga0501037_0047925
376 Ga0501047_0252156
377 Ga0501067_0187068
378 Ga0501073_0413335
379 Ga0501076_0168660
380 Ga0501242_012417
381 Ga0501249_039737
382 Ga0501261_030211
383 Ga0501270_020453
384 Ga0501044_0003374
385 nmdc:mga05p37_3339_c1
386 nmdc:mga05p37_5818_c2
387 nmdc:mga09592_15578_c1
388 nmdc:mga09592_25126_c1
389 nmdc:mga09592_30768_c1
390 nmdc:mga09592_46395_c1
391 nmdc:mga0qj67_103695_c1
392 nmdc:mga0qj67_165273_c1
393 nmdc:mga0qj67_922_c1
394 nmdc:mga06r32_38509_c1
395 nmdc:mga06r32_59_c1
396 nmdc:mga08y16_35730_c1
397 Ga0500641_0041167
398 Ga0500562_014506
399 Ga0590075_007378
400 Ga0501082_0213256
401 Ga0501082_0369134
402 2515853501
403 2676476272
404 2819745261
405 2827634103
406 2888580198
407 2889051145
408 2904118586
409 8055068488
410 8055179852

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05721

PhyH

Phytanoyl-CoA dioxygenase (PhyH)

10

214

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
6zyl-assembly1.cif.gz_A non-heme monooxygenase; thoj apo 0.8572 5 244
6zyk-assembly1.cif.gz_A non-heme monooxygenase, thoj-ni complex 0.8452 5 244
5nch-assembly1.cif.gz_B grie apo form 0.8217 2 234
6ec3-assembly1.cif.gz_A crystal structure of evdmo1 0.8125 5 222
2a1x-assembly1.cif.gz_A human phytanoyl-coa 2-hydroxylase in complex with iron and 2-oxoglutarate 0.8112 1 224
ID Description Score Start End Superfamily
af_A0A1R3LVS2_5_190_2.60.120.620 Mainly Beta;Sandwich;Jelly Rolls;q2cbj1_9rhob like domain 0.8473 66 234 2.60.120.620
af_A0A1R3PPE3_1_147_2.60.120.620 Mainly Beta;Sandwich;Jelly Rolls;q2cbj1_9rhob like domain 0.8436 108 234 2.60.120.620
af_C7FZX0_9_206_2.60.120.620 Mainly Beta;Sandwich;Jelly Rolls;q2cbj1_9rhob like domain 0.8426 65 220 2.60.120.620
af_A8E5P7_122_256_2.60.120.620 Mainly Beta;Sandwich;Jelly Rolls;q2cbj1_9rhob like domain 0.8404 116 234 2.60.120.620
2a1xA00 Mainly Beta;Sandwich;Jelly Rolls;q2cbj1_9rhob like domain 0.8112 1 224 2.60.120.620
ID Description Score Start End GO Terms
AF-A0A068NNQ6-F1-model_v4 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin 0.9745 1 251 GO:0005506
GO:0016706
AF-A0A7C7HH52-F1-model_v4 Phytanoyl-CoA dioxygenase family protein 0.9709 1 247 GO:0001561
GO:0005506
GO:0048244
AF-A0A2H5WPY0-F1-model_v4 Ectoine dioxygenase 0.969 72 251 GO:0001561
GO:0048244
AF-A0A2E4VCS1-F1-model_v4 Phytanoyl-CoA dioxygenase 0.9667 85 206 GO:0005506
GO:0016706
AF-A0A1W9WG30-F1-model_v4 Phytanoyl-CoA dioxygenase 0.9628 1 246 GO:0005506
GO:0016706

Map