F313018

General Info

Members Datasets Scaffolds Average Seq Length
204 131 155 197

Family's Representative Sequence

Representative Sequence 3300048920|Ga0496117_0005632|Ga0496117_0005632_1147_1785
Length 212
Sequence VFTVAVLISGTGSNLRALLEAAASADFPARVIVVGADREAEGFAHAEAFGIPTFLVAYEQFDSRAEWGSELTEQLAVWNPDLVVLSGLMRVLPPAVVDAWSPRLINTHPAYLPEFPGAHGVRDALAAGATETGATVHIVDSGVDTGPILAQERVAVLAGDDEHRLHDRIKPVERRLLIDVVRRIATGDLDLSSTVPSPIAARRDEASALDTP

Samples

Sample ID Description Type Environment
1 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
2 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
3 2643221546 Microbacterium sp. Root53 Isolate Unclassified
4 2643221553 Microbacterium sp. Root553 Isolate Unclassified
5 2643221566 Microbacterium sp. Root166 Isolate Unclassified
6 2643221575 Microbacterium sp. Root61 Isolate Unclassified
7 2643221597 Microbacterium sp. Root180 Isolate Unclassified
8 2643221630 Microbacterium sp. Root322 Isolate Unclassified
9 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
10 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
11 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
12 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
13 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
14 2773857759 Microbacterium sp. 1294 Isolate Unclassified
15 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
16 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
17 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
18 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
19 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
20 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
21 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
22 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
23 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
24 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
25 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
26 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
27 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
28 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
29 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
30 2919069694 Microbacterium sp. 1154 Isolate Unclassified
31 2919395869 Microbacterium resistens 2980 Isolate Unclassified
32 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
33 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
34 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
35 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
36 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
37 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
38 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
39 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
40 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
41 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
42 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
43 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
44 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
45 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
46 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
47 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
48 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
49 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
50 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
51 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
52 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
53 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
54 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
55 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
56 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
57 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
58 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
59 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
60 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
61 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
62 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
63 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
64 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
65 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
66 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
67 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
68 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
69 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
72 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
75 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
79 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
80 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
81 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
82 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
83 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
84 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
85 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
86 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
87 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
88 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
89 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
90 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
91 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
92 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
93 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
94 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
95 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
96 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
97 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
98 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
99 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
100 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
101 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
102 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
103 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
104 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
105 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
106 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
107 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
108 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
109 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
110 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
111 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
112 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
113 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
114 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
115 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
116 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
117 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
118 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
119 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
123 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
124 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
125 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
126 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
127 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
128 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
129 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
130 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
131 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 75.49
Metatranscriptomes 0.49
Isolates 24.02

Biome Distribution

Category Percentage (%)
Aerial Root 0.98
Bulb 0
Endosphere 9.8
Nodule 0
Rhizoplane 11.76
Rhizosphere 39.71
Stem 0
Stem Tuber 0
Unclassified 37.75

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10011412 3300001979 Bacteria 3383
2 Ga0006562J51391_1028455 3300003578 Bacteria 3680
3 Ga0055527_1000017 3300003760 Bacteria 242362
4 Ga0055542_1000044 3300003762 Bacteria 206982
5 Ga0055529_1000093 3300003763 Bacteria 137160
6 Ga0065714_10082452 3300005288 Bacteria 2306
7 Ga0070682_100544416 3300005337 Bacteria 907
8 Ga0068853_100889661 3300005539 Bacteria 855
9 Ga0075365_10011198 3300006038 Bacteria 5266
10 Ga0075365_10127601 3300006038 Bacteria 1758
11 Ga0075363_100010547 3300006048 Bacteria 4394
12 Ga0075364_10086529 3300006051 Bacteria 2076
13 Ga0075364_10170529 3300006051 Bacteria 1471
14 Ga0075367_10130549 3300006178 Bacteria 1553
15 Ga0105244_10039858 3300009036 Bacteria 2442
16 Ga0105243_10032510 3300009148 Bacteria 4032
17 Ga0105243_10352347 3300009148 Bacteria 1352
18 Ga0105237_10560171 3300009545 Bacteria 1150
19 Ga0105239_11029031 3300010375 Bacteria 947
20 Ga0157371_10508875 3300013102 Bacteria 890
21 Ga0171462_1001 3300013250 Bacteria 1135406
22 Ga0163162_10188986 3300013306 Bacteria 2187
23 Ga0157372_10376864 3300013307 Bacteria 1653
24 Ga0157375_10626232 3300013308 Bacteria 1234
25 Ga0157380_11072254 3300014326 Bacteria 843
26 Ga0163161_10491006 3300017792 Bacteria 998
27 Ga0209672_100039 3300025228 Bacteria 283064
28 Ga0209147_100507 3300025229 Bacteria 22670
29 Ga0209646_1000088 3300025246 Bacteria 192345
30 Ga0209148_1000004 3300025254 Bacteria 1844481
31 Ga0209455_1000117 3300025272 Bacteria 176940
32 Ga0209025_1086212 3300025294 Bacteria 1045
33 Ga0207655_1122147 3300025728 Bacteria 861
34 Ga0207671_10069578 3300025914 Bacteria 2623
35 Ga0207709_10016889 3300025935 Bacteria 4066
36 Ga0207709_10452849 3300025935 Bacteria 992
37 Ga0207709_10529760 3300025935 Bacteria 923
38 Ga0307405_11162577 3300031731 Bacteria 666
39 Ga0307406_10000236 3300031901 Bacteria 33679
40 Ga0307406_10000806 3300031901 Bacteria 17595
41 Ga0307406_10038446 3300031901 Bacteria 2962
42 Ga0307406_10049652 3300031901 Bacteria 2656
43 Ga0307412_10076781 3300031911 Bacteria 2296
44 Ga0307412_10676450 3300031911 Bacteria 883
45 Ga0307412_10834229 3300031911 Bacteria 803
46 Ga0307409_100240991 3300031995 Bacteria 1646
47 Ga0307409_100623367 3300031995 Bacteria 1069
48 Ga0307409_100655991 3300031995 Bacteria 1044
49 Ga0307416_100325355 3300032002 Bacteria 1542
50 Ga0307416_100633916 3300032002 Bacteria 1152
51 Ga0307416_101184104 3300032002 Bacteria 870
52 Ga0307414_10010112 3300032004 Bacteria 5456
53 Ga0307414_10255506 3300032004 Bacteria 1459
54 Ga0307414_10354033 3300032004 Bacteria 1261
55 Ga0307414_10692833 3300032004 Bacteria 922
56 Ga0307415_101122666 3300032126 Bacteria 737
57 Ga0395898_0119939 3300037466 Bacteria 2520
58 Ga0395901_0442433 3300038443 Bacteria 1330
59 Ga0439465_0033980 3300041413 Bacteria 1631
60 Ga0451791_1102533 3300041451 Bacteria 627
61 Ga0451800_0757482 3300041459 Bacteria 638
62 Ga0466972_0187762 3300044658 Bacteria 969
63 Ga0466965_0221556 3300044683 Bacteria 1008
64 Ga0466968_0004256 3300044735 Bacteria 5339
65 Ga0466970_0000093 3300044765 Bacteria 37847
66 Ga0466970_0016150 3300044765 Bacteria 3846
67 Ga0466970_0085307 3300044765 Bacteria 1710
68 Ga0466970_0106836 3300044765 Bacteria 1527
69 Ga0466970_0188593 3300044765 Bacteria 1145
70 Ga0466960_0011290 3300044901 Bacteria 3732
71 Ga0466958_0130326 3300045836 Bacteria 1579
72 Ga0495631_0227574 3300046518 Bacteria 796
73 Ga0495645_0150666 3300046543 Bacteria 1616
74 Ga0495686_0204089 3300047472 Bacteria 1133
75 Ga0496100_0104815 3300048903 Bacteria 1955
76 Ga0496102_0134378 3300048905 Bacteria 2317
77 Ga0496104_0060660 3300048907 Bacteria 3583
78 Ga0496104_0091008 3300048907 Bacteria 2915
79 Ga0496104_0456326 3300048907 Bacteria 1190
80 Ga0496105_0374804 3300048908 Bacteria 1133
81 Ga0496105_0613002 3300048908 Bacteria 843
82 Ga0496107_0088465 3300048910 Bacteria 2261
83 Ga0496108_0332480 3300048911 Bacteria 1325
84 Ga0496108_0641736 3300048911 Bacteria 923
85 Ga0496110_0301169 3300048913 Bacteria 1460
86 Ga0496110_0340872 3300048913 Bacteria 1365
87 Ga0496110_1094815 3300048913 Bacteria 705
88 Ga0496111_0140659 3300048914 Bacteria 1788
89 Ga0496111_0275742 3300048914 Bacteria 1247
90 Ga0496114_0015203 3300048917 Bacteria 6188
91 Ga0496114_0074093 3300048917 Bacteria 2866
92 Ga0496114_0202419 3300048917 Bacteria 1739
93 Ga0496114_0221091 3300048917 Bacteria 1662
94 Ga0496114_0321638 3300048917 Bacteria 1367
95 Ga0496114_0921025 3300048917 Bacteria 756
96 Ga0496115_0025492 3300048918 Bacteria 4604
97 Ga0496116_0028287 3300048919 Bacteria 4064
98 Ga0496117_0000028 3300048920 Bacteria 407392
99 Ga0496117_0000273 3300048920 Bacteria 96400
100 Ga0496117_0002574 3300048920 Bacteria 22577
101 Ga0496117_0005632 3300048920 Bacteria 13080
102 Ga0496117_0020218 3300048920 Bacteria 5435
103 Ga0496117_0096509 3300048920 Bacteria 1886
104 Ga0496118_0035049 3300048921 Bacteria 4083
105 Ga0496118_0042500 3300048921 Bacteria 3584
106 Ga0496118_0056555 3300048921 Bacteria 2948
107 Ga0496118_0239359 3300048921 Bacteria 1040
108 Ga0496119_0001331 3300048922 Bacteria 30331
109 Ga0496119_0003984 3300048922 Bacteria 14949
110 Ga0496119_0007359 3300048922 Bacteria 9945
111 Ga0496119_0025516 3300048922 Bacteria 4125
112 Ga0496119_0137181 3300048922 Bacteria 1325
113 Ga0496119_0145693 3300048922 Bacteria 1274
114 Ga0496120_0002620 3300048923 Bacteria 17825
115 Ga0496120_0003170 3300048923 Bacteria 15325
116 Ga0496120_0045722 3300048923 Bacteria 2534
117 Ga0496120_0193005 3300048923 Bacteria 991
118 Ga0496122_0000020 3300048925 Bacteria 401675
119 Ga0496122_0002005 3300048925 Bacteria 30302
120 Ga0496122_0017321 3300048925 Bacteria 6746
121 Ga0496122_0361401 3300048925 Bacteria 753
122 Ga0496123_0000003 3300048926 Bacteria 866556
123 Ga0496123_0000009 3300048926 Bacteria 509486
124 Ga0496124_0003321 3300048927 Bacteria 19832
125 Ga0496124_0039900 3300048927 Bacteria 4064
126 Ga0496124_0109318 3300048927 Bacteria 2228
127 Ga0496124_0186775 3300048927 Bacteria 1590
128 Ga0496124_0268865 3300048927 Bacteria 1250
129 Ga0496125_0000209 3300048928 Bacteria 122267
130 Ga0496125_0002332 3300048928 Bacteria 24952
131 Ga0496125_0016380 3300048928 Bacteria 7123
132 Ga0496125_0026052 3300048928 Bacteria 5340
133 Ga0496125_0045866 3300048928 Bacteria 3673
134 Ga0496125_0173236 3300048928 Bacteria 1447
135 Ga0496126_0005415 3300048929 Bacteria 14563
136 Ga0496126_0018767 3300048929 Bacteria 6839
137 Ga0496126_0028445 3300048929 Bacteria 5327
138 Ga0496126_0043231 3300048929 Bacteria 4157
139 Ga0496126_0103563 3300048929 Bacteria 2487
140 Ga0496126_0209362 3300048929 Bacteria 1642
141 Ga0501033_0095209 3300049570 Bacteria 2176
142 Ga0501033_0223302 3300049570 Bacteria 1340
143 Ga0501034_0000672 3300049571 Bacteria 51948
144 Ga0501034_0123107 3300049571 Bacteria 2579
145 Ga0501037_0277187 3300049573 Bacteria 1169
146 Ga0501038_0011570 3300049574 Bacteria 8049
147 Ga0501038_0040328 3300049574 Bacteria 4079
148 Ga0501038_0378517 3300049574 Bacteria 1098
149 Ga0501070_0004105 3300049586 Bacteria 12522
150 nmdc:mga00v17_262112_c1 3300050491 Bacteria 1121
151 nmdc:mga00v17_6886_c1 3300050491 Bacteria 6043
152 nmdc:mga0yw44_27012_c1 3300050492 Bacteria 3284
153 nmdc:mga0yw44_78081_c1 3300050492 Bacteria 2070
154 nmdc:mga06z11_95192_c1 3300050494 Bacteria 1624
155 Ga0500637_0417708 3300053178 Bacteria 691

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2946033335 2946034656 187
2 iso_pu_bacteria 2808606368 2808884859 188
3 iso_pu_bacteria 2906799679 2906801586 188
4 iso_pu_bacteria 2773857759 2774383468 189
5 iso_pu_bacteria 2852646457 2852646568 189
6 iso_pu_bacteria 2945968032 2945970922 189
7 iso_pu_bacteria 2946080515 2946081766 189
8 iso_pu_bacteria 2977251589 2977252033 189
9 iso_pu_bacteria 2643221575 2643888306 190
10 iso_pu_bacteria 2585428157 2588106886 191
11 iso_pu_bacteria 2643221542 2643734899 191
12 iso_pu_bacteria 2643221546 2643753819 191
13 iso_pu_bacteria 2643221630 2644173059 191
14 iso_pu_bacteria 2643221724 2644679267 191
15 iso_pu_bacteria 2728369380 2730228770 191
16 iso_pu_bacteria 2747842429 2747952352 191
17 iso_pu_bacteria 2852663356 2852665792 191
18 iso_pu_bacteria 2857723135 2857724702 191
19 iso_pu_bacteria 2919523602 2919525361 191
20 iso_pu_bacteria 2946041624 2946043246 191
21 iso_pu_bacteria 8004182704 8004183619 191
22 3300025294 Ga0209025_1086212 Ga0209025_10862122 193
23 3300032004 Ga0307414_10255506 Ga0307414_102555062 193
24 3300045836 Ga0466958_0130326 Ga0466958_0130326_695_1276 193
25 3300049571 Ga0501034_0123107 Ga0501034_0123107_1187_1768 193
26 3300049574 Ga0501038_0011570 Ga0501038_0011570_2377_2958 193
27 iso_pu_bacteria 2643221553 2643783493 193
28 iso_pu_bacteria 2808606306 2808628629 193
29 3300009545 Ga0105237_10560171 Ga0105237_105601712 194
30 3300010375 Ga0105239_11029031 Ga0105239_110290311 194
31 3300013306 Ga0163162_10188986 Ga0163162_101889862 194
32 3300013307 Ga0157372_10376864 Ga0157372_103768641 194
33 3300025914 Ga0207671_10069578 Ga0207671_100695782 194
34 3300048905 Ga0496102_0134378 Ga0496102_0134378_1614_2198 194
35 3300048907 Ga0496104_0091008 Ga0496104_0091008_551_1135 194
36 3300048908 Ga0496105_0613002 Ga0496105_0613002_32_616 194
37 3300048910 Ga0496107_0088465 Ga0496107_0088465_578_1162 194
38 3300048911 Ga0496108_0641736 Ga0496108_0641736_27_611 194
39 3300048913 Ga0496110_0340872 Ga0496110_0340872_717_1301 194
40 3300048914 Ga0496111_0140659 Ga0496111_0140659_605_1189 194
41 3300048917 Ga0496114_0221091 Ga0496114_0221091_863_1447 194
42 3300048918 Ga0496115_0025492 Ga0496115_0025492_3982_4566 194
43 3300003760 Ga0055527_1000017 Ga0055527_1000017115 195
44 3300003762 Ga0055542_1000044 Ga0055542_1000044115 195
45 3300003763 Ga0055529_1000093 Ga0055529_1000093136 195
46 3300005288 Ga0065714_10082452 Ga0065714_100824522 195
47 3300006038 Ga0075365_10011198 Ga0075365_100111983 195
48 3300006038 Ga0075365_10127601 Ga0075365_101276012 195
49 3300006048 Ga0075363_100010547 Ga0075363_1000105474 195
50 3300006051 Ga0075364_10086529 Ga0075364_100865292 195
51 3300006178 Ga0075367_10130549 Ga0075367_101305492 195
52 3300014326 Ga0157380_11072254 Ga0157380_110722541 195
53 3300017792 Ga0163161_10491006 Ga0163161_104910062 195
54 3300025228 Ga0209672_100039 Ga0209672_100039116 195
55 3300025229 Ga0209147_100507 Ga0209147_10050717 195
56 3300025246 Ga0209646_1000088 Ga0209646_1000088156 195
57 3300025254 Ga0209148_1000004 Ga0209148_1000004116 195
58 3300025272 Ga0209455_1000117 Ga0209455_1000117117 195
59 3300031731 Ga0307405_11162577 Ga0307405_111625771 195
60 3300031901 Ga0307406_10000806 Ga0307406_100008063 195
61 3300031901 Ga0307406_10038446 Ga0307406_100384463 195
62 3300031901 Ga0307406_10049652 Ga0307406_100496522 195
63 3300031911 Ga0307412_10076781 Ga0307412_100767812 195
64 3300031911 Ga0307412_10834229 Ga0307412_108342291 195
65 3300031995 Ga0307409_100623367 Ga0307409_1006233672 195
66 3300032004 Ga0307414_10010112 Ga0307414_100101122 195
67 3300032004 Ga0307414_10354033 Ga0307414_103540331 195
68 3300032004 Ga0307414_10692833 Ga0307414_106928331 195
69 3300041451 Ga0451791_1102533 Ga0451791_1102533_21_608 195
70 3300044765 Ga0466970_0016150 Ga0466970_0016150_192_779 195
71 3300044765 Ga0466970_0085307 Ga0466970_0085307_417_1004 195
72 3300044765 Ga0466970_0106836 Ga0466970_0106836_194_781 195
73 3300044901 Ga0466960_0011290 Ga0466960_0011290_2599_3186 195
74 3300046518 Ga0495631_0227574 Ga0495631_0227574_10_597 195
75 3300047472 Ga0495686_0204089 Ga0495686_0204089_212_799 195
76 3300048919 Ga0496116_0028287 Ga0496116_0028287_770_1366 195
77 3300048920 Ga0496117_0000273 Ga0496117_0000273_73150_73737 195
78 3300048920 Ga0496117_0020218 Ga0496117_0020218_3467_4063 195
79 3300048921 Ga0496118_0042500 Ga0496118_0042500_249_845 195
80 3300048921 Ga0496118_0056555 Ga0496118_0056555_1294_1881 195
81 3300048922 Ga0496119_0007359 Ga0496119_0007359_1505_2101 195
82 3300048922 Ga0496119_0145693 Ga0496119_0145693_311_898 195
83 3300048923 Ga0496120_0002620 Ga0496120_0002620_7861_8457 195
84 3300048925 Ga0496122_0000020 Ga0496122_0000020_195141_195737 195
85 3300048925 Ga0496122_0361401 Ga0496122_0361401_90_677 195
86 3300048926 Ga0496123_0000003 Ga0496123_0000003_410265_410861 195
87 3300048927 Ga0496124_0039900 Ga0496124_0039900_220_816 195
88 3300048927 Ga0496124_0268865 Ga0496124_0268865_370_957 195
89 3300048928 Ga0496125_0002332 Ga0496125_0002332_22370_22966 195
90 3300048928 Ga0496125_0016380 Ga0496125_0016380_3130_3717 195
91 3300048928 Ga0496125_0026052 Ga0496125_0026052_318_905 195
92 3300048928 Ga0496125_0173236 Ga0496125_0173236_521_1108 195
93 3300048929 Ga0496126_0005415 Ga0496126_0005415_1153_1740 195
94 3300048929 Ga0496126_0028445 Ga0496126_0028445_3526_4113 195
95 3300048929 Ga0496126_0103563 Ga0496126_0103563_1281_1868 195
96 3300048929 Ga0496126_0209362 Ga0496126_0209362_347_943 195
97 3300049570 Ga0501033_0095209 Ga0501033_0095209_786_1373 195
98 3300049571 Ga0501034_0000672 Ga0501034_0000672_17026_17613 195
99 3300049574 Ga0501038_0040328 Ga0501038_0040328_2549_3136 195
100 3300050491 nmdc:mga00v17_6886_c1 nmdc:mga00v17_6886_c1_2702_3289 195
101 3300050492 nmdc:mga0yw44_27012_c1 nmdc:mga0yw44_27012_c1_1270_1860 195
102 3300050492 nmdc:mga0yw44_78081_c1 nmdc:mga0yw44_78081_c1_273_860 195
103 3300050494 nmdc:mga06z11_95192_c1 nmdc:mga06z11_95192_c1_465_1052 195
104 3300053178 Ga0500637_0417708 Ga0500637_0417708_23_610 195
105 iso_pu_bacteria 2757320536 2758224585 195
106 iso_pu_bacteria 2773857758 2774378710 195
107 iso_pu_bacteria 2821268502 2821269184 195
108 iso_pu_bacteria 2904509784 2904510208 195
109 iso_pu_bacteria 2908678064 2908678577 195
110 iso_pu_bacteria 2919069694 2919070928 195
111 iso_pu_bacteria 2974294766 2974298226 195
112 iso_pu_bacteria 2974324384 2974325544 195
113 iso_pu_bacteria 2977228692 2977230475 195
114 iso_pu_bacteria 2977236895 2977239276 195
115 iso_pu_bacteria 2977264416 2977265716 195
116 iso_pu_bacteria 2984542743 2984542940 195
117 iso_pu_bacteria 8004212874 8004213436 195
118 iso_pu_bacteria 8016254467 8016254884 195
119 3300005337 Ga0070682_100544416 Ga0070682_1005444161 196
120 3300048917 Ga0496114_0921025 Ga0496114_0921025_103_693 196
121 3300048928 Ga0496125_0000209 Ga0496125_0000209_14863_15453 196
122 iso_pu_bacteria 2773857763 2774400456 196
123 iso_pu_bacteria 2833709550 2833710078 196
124 iso_pu_bacteria 2870628048 2870629559 196
125 iso_pu_bacteria 8045830549 8045832463 196
126 3300003578 Ga0006562J51391_1028455 Ga0006562J51391_10284553 197
127 3300006051 Ga0075364_10170529 Ga0075364_101705292 197
128 3300009036 Ga0105244_10039858 Ga0105244_100398582 197
129 3300009148 Ga0105243_10032510 Ga0105243_100325102 197
130 3300025935 Ga0207709_10016889 Ga0207709_100168892 197
131 3300031901 Ga0307406_10000236 Ga0307406_100002363 197
132 3300048907 Ga0496104_0456326 Ga0496104_0456326_562_1155 197
133 3300048913 Ga0496110_1094815 Ga0496110_1094815_74_667 197
134 3300048920 Ga0496117_0002574 Ga0496117_0002574_288_881 197
135 3300048921 Ga0496118_0035049 Ga0496118_0035049_3293_3886 197
136 3300048922 Ga0496119_0003984 Ga0496119_0003984_8277_8870 197
137 3300048923 Ga0496120_0193005 Ga0496120_0193005_120_713 197
138 3300048925 Ga0496122_0002005 Ga0496122_0002005_15913_16506 197
139 3300048926 Ga0496123_0000009 Ga0496123_0000009_495100_495693 197
140 3300048927 Ga0496124_0003321 Ga0496124_0003321_2476_3069 197
141 3300048929 Ga0496126_0018767 Ga0496126_0018767_2796_3389 197
142 3300050491 nmdc:mga00v17_262112_c1 nmdc:mga00v17_262112_c1_265_858 197
143 iso_pu_bacteria 2643221566 2643847966 197
144 iso_pu_bacteria 2643221597 2643994953 197
145 3300013102 Ga0157371_10508875 Ga0157371_105088752 198
146 3300037466 Ga0395898_0119939 Ga0395898_0119939_1692_2288 198
147 3300044765 Ga0466970_0000093 Ga0466970_0000093_8524_9123 198
148 iso_pu_bacteria 2811994872 2812322232 198
149 iso_pu_bacteria 2928090899 2928091022 198
150 iso_pu_bacteria 2984580707 2984582222 198
151 3300025728 Ga0207655_1122147 Ga0207655_11221472 199
152 3300025935 Ga0207709_10452849 Ga0207709_104528491 199
153 3300041459 Ga0451800_0757482 Ga0451800_0757482_19_618 199
154 3300048903 Ga0496100_0104815 Ga0496100_0104815_989_1588 199
155 3300048907 Ga0496104_0060660 Ga0496104_0060660_1866_2465 199
156 3300048908 Ga0496105_0374804 Ga0496105_0374804_318_917 199
157 3300048911 Ga0496108_0332480 Ga0496108_0332480_588_1187 199
158 3300048913 Ga0496110_0301169 Ga0496110_0301169_628_1227 199
159 3300048914 Ga0496111_0275742 Ga0496111_0275742_355_954 199
160 3300048917 Ga0496114_0015203 Ga0496114_0015203_1663_2262 199
161 3300048917 Ga0496114_0202419 Ga0496114_0202419_470_1069 199
162 3300048920 Ga0496117_0000028 Ga0496117_0000028_1317_1916 199
163 3300048922 Ga0496119_0025516 Ga0496119_0025516_3418_4017 199
164 3300048922 Ga0496119_0137181 Ga0496119_0137181_500_1099 199
165 3300048923 Ga0496120_0003170 Ga0496120_0003170_708_1307 199
166 3300048923 Ga0496120_0045722 Ga0496120_0045722_1229_1828 199
167 3300048925 Ga0496122_0017321 Ga0496122_0017321_5449_6048 199
168 3300048927 Ga0496124_0109318 Ga0496124_0109318_970_1569 199
169 3300048927 Ga0496124_0186775 Ga0496124_0186775_266_865 199
170 3300048928 Ga0496125_0045866 Ga0496125_0045866_484_1083 199
171 3300048929 Ga0496126_0043231 Ga0496126_0043231_3313_3912 199
172 iso_pu_bacteria 2919395869 2919398559 199
173 3300005539 Ga0068853_100889661 Ga0068853_1008896611 200
174 3300013250 Ga0171462_1001 Ga0171462_1001512 200
175 3300013308 Ga0157375_10626232 Ga0157375_106262322 200
176 3300031911 Ga0307412_10676450 Ga0307412_106764502 200
177 3300031995 Ga0307409_100240991 Ga0307409_1002409912 200
178 3300032002 Ga0307416_100325355 Ga0307416_1003253552 200
179 3300032002 Ga0307416_100633916 Ga0307416_1006339162 200
180 3300038443 Ga0395901_0442433 Ga0395901_0442433_11_613 200
181 3300044658 Ga0466972_0187762 Ga0466972_0187762_337_939 200
182 3300044683 Ga0466965_0221556 Ga0466965_0221556_251_853 200
183 3300044735 Ga0466968_0004256 Ga0466968_0004256_2825_3427 200
184 3300044765 Ga0466970_0188593 Ga0466970_0188593_95_697 200
185 3300048922 Ga0496119_0001331 Ga0496119_0001331_10855_11457 200
186 3300049573 Ga0501037_0277187 Ga0501037_0277187_90_692 200
187 3300049574 Ga0501038_0378517 Ga0501038_0378517_52_654 200
188 3300049586 Ga0501070_0004105 Ga0501070_0004105_2852_3454 200
189 3300031995 Ga0307409_100655991 Ga0307409_1006559912 201
190 3300032002 Ga0307416_101184104 Ga0307416_1011841042 201
191 3300046543 Ga0495645_0150666 Ga0495645_0150666_55_660 201
192 iso_pu_bacteria 2808606447 2809226668 201
193 iso_pu_bacteria 2852632344 2852632877 201
194 3300032126 Ga0307415_101122666 Ga0307415_1011226662 202
195 3300048917 Ga0496114_0074093 Ga0496114_0074093_1760_2368 202
196 3300041413 Ga0439465_0033980 Ga0439465_0033980_856_1503 204
197 3300048917 Ga0496114_0321638 Ga0496114_0321638_573_1196 205
198 3300009148 Ga0105243_10352347 Ga0105243_103523472 206
199 3300025935 Ga0207709_10529760 Ga0207709_105297601 206
200 3300048920 Ga0496117_0005632 Ga0496117_0005632_1147_1785 206
201 3300048921 Ga0496118_0239359 Ga0496118_0239359_184_822 206
202 3300049570 Ga0501033_0223302 Ga0501033_0223302_242_877 206
203 3300001979 JGI24740J21852_10011412 JGI24740J21852_100114123 209
204 3300048920 Ga0496117_0096509 Ga0496117_0096509_22_651 209

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00551

Formyl_trans_N

Formyl transferase

2

181

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
5j9f-assembly2.cif.gz_A human gar transformylase in complex with gar and (4-{[2-(2-amino-4-oxo-4,7-dihydro-3h-pyrrolo[2,3-d]pyrimidin-6-yl)ethyl]amino}benzoyl)-l-glutamic acid (agf183) 0.9765 3 187
4zyv-assembly1.cif.gz_A human gar transformylase in complex with gar and n-({5-[(2-amino-4-oxo-4,7-dihydro-3h-pyrrolo[2,3-d]pyrimidin-6-yl)butyl]thiophen-2-yl}carbonyl)-l-glutamic acid (agf71) 0.9737 3 192
3auf-assembly1.cif.gz_A-2 crystal structure of glycinamide ribonucleotide transformylase 1 from symbiobacterium toebii 0.9695 2 190
1men-assembly1.cif.gz_A complex structure of human gar tfase and substrate beta-gar 0.9681 1 187
1c2t-assembly1.cif.gz_A new insights into inhibitor design from the crystal structure and nmr studies of e. coli gar transformylase in complex with beta-gar and 10-formyl-5,8,10-trideazafolic acid. 0.9665 2 187
ID Description Score Start End Superfamily
1njsA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Formyl transferase, N-terminal domain 0.9722 3 187 3.40.50.170
3aufA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Formyl transferase, N-terminal domain 0.9695 2 190 3.40.50.170
af_Q20143_783_975_3.40.50.170 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Formyl transferase, N-terminal domain 0.959 2 188 3.40.50.170
2ywrA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Formyl transferase, N-terminal domain 0.9525 2 187 3.40.50.170
4s1nA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Formyl transferase, N-terminal domain 0.9468 3 184 3.40.50.170
ID Description Score Start End GO Terms
AF-A0A7Y2M349-F1-model_v4 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) (5'-phosphoribosylglycinamide transformylase) (GAR transformylase) (GART) 0.9995 1 193 GO:0004644
GO:0005829
GO:0006189
AF-A0A6I4P233-F1-model_v4 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) (5'-phosphoribosylglycinamide transformylase) (GAR transformylase) (GART) 0.9945 1 190 GO:0004644
GO:0005829
GO:0006189
AF-A0A348NTN4-F1-model_v4 phosphoribosylglycinamide formyltransferase 1 (EC 2.1.2.2) 0.9924 1 82 GO:0004644
GO:0005829
GO:0006189
AF-A0A261CWF8-F1-model_v4 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) (5'-phosphoribosylglycinamide transformylase) (GAR transformylase) (GART) 0.9857 2 186 GO:0004644
GO:0005829
GO:0006189
AF-A0A5E3ZXB2-F1-model_v4 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) (5'-phosphoribosylglycinamide transformylase) (GAR transformylase) (GART) 0.9853 2 186 GO:0004644
GO:0005829
GO:0006189

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pLDDT pTM Quality
90.23 0.86 High
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Predicted Structure (AlphaFold2)

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