F312441

General Info

Members Datasets Scaffolds Average Seq Length
204 115 408 543

Family's Representative Sequence

Representative Sequence 3300009094|Ga0111539_10095469|Ga0111539_100954693
Length 617
Sequence VKNALTTERPPRVGLISLGCAKNLVDAEIMLGSLLKQGVEITNDAASADALIVNTCSFIDAAQEESVDAILESAQLREAHNRGQALIVSGCLPQRFRDELPAVLPEVDAFMGIDQVAQVADVVRQALRHRAQRIRSPEATENTRHSTAKAAARVAELGQPNGVNTTHGQEHDLSGSDRFGKTRKVSTPTTLDTARQASRPGRGRLVPEKRRVADPTRGRGRPSPNLEDTLPSGVPAPRSPGXXXXPLVNVNRRPSYIPDFATPRFRLTPRHSAYVKIAEGCNHPCSFCIIPRMRGGHRSRPLADLVAEARQLIADGVKELNLISQDSTYYGLDLRPNRTGSIASPAKFNATARTLAADTPTLCGLLRALNALPGRFWVRLLYTHPAHWTDELIQTIADCPKVARYVDMPLQHIHDNMLERMRRETSRHYIEDLIQRIRAGIPGIALRTTFIVGFPGETEACFQTLLDFIRRTKFERLGVFTYSQEEGTRAAKMEHQVPDRVKRQRRDLAMAEQHKVARQISGSFVGRTIKVLIEKEASAKDLRSASINSWEHGLLRVAAARDSNLGCRNVYVARGEADAPDIDGRVYVRGKLRPGEFARVKIVGHTDYDLIAEPGAR

Samples

Sample ID Description Type Environment
1 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
13 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
14 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
20 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
23 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
24 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
25 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
26 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
29 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
30 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
31 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
32 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
33 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
34 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
35 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
36 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
37 3300025271 Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
56 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
57 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
58 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
59 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
60 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
61 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
62 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
63 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
64 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
65 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
66 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
67 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
68 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
69 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
70 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
71 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
72 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
73 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
74 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
75 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
76 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
77 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
78 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
79 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
80 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
81 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
82 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
83 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
84 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
85 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
86 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
87 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
88 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
89 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
90 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
91 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
92 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
93 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
94 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
95 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
96 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
97 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
98 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
99 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
100 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
101 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
102 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
103 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
104 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
105 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
106 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
107 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
113 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
114 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
115 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.49
Nodule 0
Rhizoplane 0.98
Rhizosphere 97.55
Stem 0
Stem Tuber 0
Unclassified 5.39

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0111539_10095469 3300009094 Bacteria 3492
2 JGI25406J46586_10000011 3300003203 Bacteria 104720
3 rootH2_10220322 3300003320 Bacteria 2813
4 rootH1_10062183 3300003323 Bacteria 3419
5 Ga0065715_10001267 3300005293 Bacteria 8142
6 Ga0070690_100000421 3300005330 Bacteria 21495
7 Ga0070689_100002025 3300005340 Bacteria 13139
8 Ga0070689_100004993 3300005340 Bacteria 9009
9 Ga0070675_100032223 3300005354 Bacteria 4240
10 Ga0070673_100014097 3300005364 Bacteria 5553
11 Ga0070688_100073992 3300005365 Bacteria 2186
12 Ga0070714_100012606 3300005435 Bacteria 6751
13 Ga0070708_100015123 3300005445 Bacteria 6365
14 Ga0070707_100006531 3300005468 Bacteria 10830
15 Ga0070686_100024603 3300005544 Bacteria 3611
16 Ga0070686_100028273 3300005544 Bacteria 3399
17 Ga0070686_100110987 3300005544 Bacteria 1868
18 Ga0070665_100045705 3300005548 Bacteria 4397
19 Ga0068855_100034807 3300005563 Bacteria 6003
20 Ga0068855_100053470 3300005563 Bacteria 4751
21 Ga0068857_100001181 3300005577 Bacteria 20397
22 Ga0068856_100000079 3300005614 Bacteria 92486
23 Ga0068856_100063738 3300005614 Bacteria 3641
24 Ga0068856_100085252 3300005614 Bacteria 3138
25 Ga0068859_100066018 3300005617 Bacteria 3653
26 Ga0068864_100030183 3300005618 Bacteria 4594
27 Ga0068863_100008142 3300005841 Bacteria 10234
28 Ga0068863_100133459 3300005841 Bacteria 2371
29 Ga0081539_10000139 3300005985 Bacteria 170623
30 Ga0097621_100003031 3300006237 Bacteria 11534
31 Ga0075428_100003743 3300006844 Bacteria 16685
32 Ga0075429_100022271 3300006880 Bacteria 5497
33 Ga0097620_100066019 3300006931 Bacteria 3653
34 Ga0105240_10006225 3300009093 Bacteria 17552
35 Ga0105240_10075790 3300009093 Bacteria 4148
36 Ga0105240_10116917 3300009093 Bacteria 3216
37 Ga0111539_10004958 3300009094 Bacteria 17316
38 Ga0111539_10040054 3300009094 Bacteria 5643
39 Ga0105238_10002482 3300009551 Bacteria 18465
40 Ga0105238_10115437 3300009551 Bacteria 2664
41 Ga0105249_10161524 3300009553 Bacteria 2166
42 Ga0157370_10029762 3300013104 Bacteria 5355
43 Ga0157370_10064270 3300013104 Bacteria 3474
44 Ga0157374_10049504 3300013296 Bacteria 3903
45 Ga0157374_10051031 3300013296 Bacteria 3848
46 Ga0157378_10021672 3300013297 Bacteria 5650
47 Ga0163162_10033298 3300013306 Bacteria 5120
48 Ga0157375_10000111 3300013308 Bacteria 79589
49 Ga0157375_10145852 3300013308 Bacteria 2498
50 Ga0163163_10000119 3300014325 Bacteria 84222
51 Ga0163163_10082857 3300014325 Bacteria 3212
52 Ga0157376_10022776 3300014969 Bacteria 4890
53 Ga0207666_1000826 3300025271 Unclassified 3714
54 Ga0207697_10019091 3300025315 Bacteria 2808
55 Ga0207697_10020503 3300025315 Bacteria 2706
56 Ga0207680_10044257 3300025903 Unclassified 2617
57 Ga0207684_10035775 3300025910 Bacteria 4216
58 Ga0207695_10058356 3300025913 Bacteria 4006
59 Ga0207695_10079850 3300025913 Bacteria 3314
60 Ga0207646_10027231 3300025922 Bacteria 5212
61 Ga0207646_10087061 3300025922 Bacteria 2795
62 Ga0207694_10004337 3300025924 Bacteria 11076
63 Ga0207694_10007050 3300025924 Bacteria 8531
64 Ga0207694_10043219 3300025924 Bacteria 3478
65 Ga0207659_10013849 3300025926 Bacteria 5183
66 Ga0207664_10005074 3300025929 Bacteria 8968
67 Ga0207644_10073573 3300025931 Bacteria 2506
68 Ga0207670_10001537 3300025936 Bacteria 12124
69 Ga0207670_10001886 3300025936 Bacteria 10946
70 Ga0207670_10048654 3300025936 Unclassified 2831
71 Ga0207691_10088687 3300025940 Bacteria 2774
72 Ga0207667_10023805 3300025949 Bacteria 6740
73 Ga0207667_10050411 3300025949 Bacteria 4392
74 Ga0207667_10061727 3300025949 Bacteria 3921
75 Ga0207651_10118813 3300025960 Bacteria 2000
76 Ga0207702_10003341 3300026078 Bacteria 14713
77 Ga0207648_10109535 3300026089 Bacteria 2424
78 Ga0207674_10028888 3300026116 Bacteria 5845
79 Ga0268266_10068241 3300028379 Bacteria 3078
80 Ga0265337_1000067 3300028556 Bacteria 48544
81 Ga0265337_1000102 3300028556 Bacteria 42139
82 Ga0265337_1002654 3300028556 Bacteria 8050
83 Ga0265326_10006343 3300028558 Bacteria 3685
84 Ga0265319_1000001 3300028563 Bacteria 549513
85 Ga0265323_10000212 3300028653 Bacteria 34562
86 Ga0265323_10005405 3300028653 Bacteria 5430
87 Ga0265322_10007217 3300028654 Bacteria 3252
88 Ga0265336_10003135 3300028666 Bacteria 6578
89 Ga0265338_10000242 3300028800 Bacteria 101378
90 Ga0265338_10000279 3300028800 Bacteria 92884
91 Ga0265338_10000483 3300028800 Bacteria 71199
92 Ga0265338_10000848 3300028800 Bacteria 51617
93 Ga0265338_10001348 3300028800 Bacteria 39992
94 Ga0265338_10002676 3300028800 Bacteria 26200
95 Ga0265338_10004798 3300028800 Bacteria 18070
96 Ga0265338_10005361 3300028800 Bacteria 16769
97 Ga0265338_10005775 3300028800 Bacteria 15998
98 Ga0265338_10007736 3300028800 Bacteria 13228
99 Ga0265338_10008485 3300028800 Bacteria 12466
100 Ga0265338_10014274 3300028800 Bacteria 8854
101 Ga0265338_10030339 3300028800 Bacteria 5329
102 Ga0265338_10035240 3300028800 Bacteria 4816
103 Ga0265338_10043944 3300028800 Bacteria 4133
104 Ga0265338_10046283 3300028800 Bacteria 3988
105 Ga0265338_10100551 3300028800 Bacteria 2358
106 Ga0265324_10000768 3300029957 Bacteria 21141
107 Ga0265324_10001547 3300029957 Bacteria 12883
108 Ga0265324_10009113 3300029957 Bacteria 3893
109 Ga0265324_10009326 3300029957 Bacteria 3838
110 Ga0265324_10019197 3300029957 Bacteria 2464
111 Ga0265332_10029359 3300031238 Bacteria 2405
112 Ga0265328_10001693 3300031239 Bacteria 10090
113 Ga0265320_10000711 3300031240 Bacteria 25479
114 Ga0265320_10000870 3300031240 Bacteria 22823
115 Ga0265320_10003259 3300031240 Bacteria 10970
116 Ga0265320_10011674 3300031240 Bacteria 5158
117 Ga0265320_10014616 3300031240 Bacteria 4461
118 Ga0265329_10000388 3300031242 Bacteria 23245
119 Ga0265340_10006942 3300031247 Bacteria 6182
120 Ga0265340_10007071 3300031247 Bacteria 6118
121 Ga0265327_10000767 3300031251 Bacteria 49654
122 Ga0265327_10005913 3300031251 Bacteria 9991
123 Ga0265316_10004114 3300031344 Bacteria 14563
124 Ga0265316_10008300 3300031344 Bacteria 9649
125 Ga0265316_10019865 3300031344 Bacteria 5736
126 Ga0265316_10037724 3300031344 Unclassified 3898
127 Ga0265316_10063834 3300031344 Bacteria 2854
128 Ga0265316_10080569 3300031344 Bacteria 2497
129 Ga0265313_10003853 3300031595 Bacteria 11837
130 Ga0265313_10018296 3300031595 Bacteria 3939
131 Ga0265314_10000020 3300031711 Bacteria 307052
132 Ga0265314_10055145 3300031711 Bacteria 2746
133 Ga0265314_10062789 3300031711 Bacteria 2523
134 Ga0265342_10009059 3300031712 Bacteria 7062
135 Ga0265342_10018821 3300031712 Bacteria 4465
136 Ga0373928_0000011 3300035084 Bacteria 31163
137 Ga0373929_0000882 3300035085 Bacteria 5851
138 Ga0373944_0000019 3300035089 Bacteria 29600
139 Ga0373949_0002304 3300035090 Bacteria 4964
140 Ga0373932_0000001 3300035112 Bacteria 1459067
141 Ga0373954_0014848 3300035118 Bacteria 3475
142 Ga0373954_0029458 3300035118 Bacteria 2527
143 Ga0373962_0000055 3300035242 Bacteria 25343
144 Ga0373931_0000004 3300035691 Bacteria 535140
145 Ga0373927_0014667 3300035695 Bacteria 5182
146 Ga0373947_0011606 3300035725 Bacteria 5055
147 Ga0373947_0012154 3300035725 Bacteria 4929
148 Ga0373937_0057216 3300036401 Bacteria 3582
149 Ga0373937_0123281 3300036401 Bacteria 2416
150 Ga0373925_0000046 3300037068 Bacteria 131256
151 Ga0373925_0027490 3300037068 Bacteria 4163
152 Ga0395905_0068840 3300037471 Unclassified 3315
153 Ga0451577_0000910 3300042876 Bacteria 43577
154 Ga0451577_0021200 3300042876 Bacteria 5949
155 Ga0451577_0150628 3300042876 Bacteria 2093
156 Ga0453684_0000389 3300044712 Bacteria 180487
157 Ga0453684_0010015 3300044712 Bacteria 16319
158 Ga0453684_0034060 3300044712 Bacteria 7081
159 Ga0453684_0086709 3300044712 Bacteria 3884
160 Ga0453684_0124628 3300044712 Bacteria 3103
161 Ga0451576_0013218 3300045051 Bacteria 9238
162 Ga0451576_0075174 3300045051 Bacteria 3515
163 Ga0451576_0143023 3300045051 Bacteria 2494
164 Ga0451576_0160969 3300045051 Bacteria 2343
165 Ga0451576_0161514 3300045051 Bacteria 2339
166 Ga0451576_0353512 3300045051 Bacteria 1538
167 Ga0495592_0000034 3300046454 Bacteria 125977
168 Ga0495662_0040864 3300046476 Bacteria 2239
169 Ga0495618_0008599 3300046514 Bacteria 6167
170 Ga0495628_0002699 3300046516 Bacteria 15877
171 Ga0495630_0000318 3300046517 Bacteria 38584
172 Ga0495630_0002324 3300046517 Bacteria 13224
173 Ga0495630_0015015 3300046517 Bacteria 5652
174 Ga0495630_0032219 3300046517 Unclassified 3904
175 Ga0495630_0056138 3300046517 Unclassified 2951
176 Ga0495666_0020774 3300046526 Bacteria 3251
177 Ga0495640_0006707 3300046533 Bacteria 9085
178 Ga0495586_0000205 3300046535 Bacteria 39531
179 Ga0495586_0001357 3300046535 Bacteria 13600
180 Ga0495586_0002739 3300046535 Bacteria 9535
181 Ga0495586_0010434 3300046535 Unclassified 4938
182 Ga0495645_0001374 3300046543 Bacteria 16428
183 Ga0495634_0007562 3300046642 Bacteria 8145
184 Ga0495646_0098037 3300046680 Bacteria 1684
185 Ga0495658_0018530 3300046683 Bacteria 3621
186 Ga0495624_0077008 3300046690 Unclassified 2069
187 Ga0495674_0008889 3300047319 Bacteria 9554
188 Ga0495674_0020048 3300047319 Bacteria 6198
189 Ga0495676_0042505 3300047321 Bacteria 3730
190 Ga0495680_0027235 3300047322 Bacteria 4698
191 Ga0496106_0029656 3300048909 Bacteria 4079
192 Ga0496108_0236110 3300048911 Unclassified 1590
193 Ga0501032_0038293 3300049569 Bacteria 3267
194 Ga0501033_0010461 3300049570 Bacteria 7116
195 Ga0501033_0021433 3300049570 Bacteria 4875
196 Ga0501034_0155742 3300049571 Bacteria 2259
197 Ga0501047_0055741 3300049581 Bacteria 3822
198 Ga0501035_0022297 3300049822 Bacteria 5815
199 Ga0501035_0065424 3300049822 Bacteria 3229
200 Ga0501044_0000158 3300049823 Bacteria 83865
201 Ga0501044_0020991 3300049823 Bacteria 6974
202 nmdc:mga09592_24608_c1 3300050508 Bacteria 4980
203 nmdc:mga06r32_30354_c1 3300050510 Bacteria 5071
204 Ga0500636_0065271 3300053177 Unclassified 2119
205 Ga0111539_10095469
206 JGI25406J46586_10000011
207 rootH2_10220322
208 rootH1_10062183
209 Ga0065715_10001267
210 Ga0070690_100000421
211 Ga0070689_100002025
212 Ga0070689_100004993
213 Ga0070675_100032223
214 Ga0070673_100014097
215 Ga0070688_100073992
216 Ga0070714_100012606
217 Ga0070708_100015123
218 Ga0070707_100006531
219 Ga0070686_100024603
220 Ga0070686_100028273
221 Ga0070686_100110987
222 Ga0070665_100045705
223 Ga0068855_100034807
224 Ga0068855_100053470
225 Ga0068857_100001181
226 Ga0068856_100000079
227 Ga0068856_100063738
228 Ga0068856_100085252
229 Ga0068859_100066018
230 Ga0068864_100030183
231 Ga0068863_100008142
232 Ga0068863_100133459
233 Ga0081539_10000139
234 Ga0097621_100003031
235 Ga0075428_100003743
236 Ga0075429_100022271
237 Ga0097620_100066019
238 Ga0105240_10006225
239 Ga0105240_10075790
240 Ga0105240_10116917
241 Ga0111539_10004958
242 Ga0111539_10040054
243 Ga0105238_10002482
244 Ga0105238_10115437
245 Ga0105249_10161524
246 Ga0157370_10029762
247 Ga0157370_10064270
248 Ga0157374_10049504
249 Ga0157374_10051031
250 Ga0157378_10021672
251 Ga0163162_10033298
252 Ga0157375_10000111
253 Ga0157375_10145852
254 Ga0163163_10000119
255 Ga0163163_10082857
256 Ga0157376_10022776
257 Ga0207666_1000826
258 Ga0207697_10019091
259 Ga0207697_10020503
260 Ga0207680_10044257
261 Ga0207684_10035775
262 Ga0207695_10058356
263 Ga0207695_10079850
264 Ga0207646_10027231
265 Ga0207646_10087061
266 Ga0207694_10004337
267 Ga0207694_10007050
268 Ga0207694_10043219
269 Ga0207659_10013849
270 Ga0207664_10005074
271 Ga0207644_10073573
272 Ga0207670_10001537
273 Ga0207670_10001886
274 Ga0207670_10048654
275 Ga0207691_10088687
276 Ga0207667_10023805
277 Ga0207667_10050411
278 Ga0207667_10061727
279 Ga0207651_10118813
280 Ga0207702_10003341
281 Ga0207648_10109535
282 Ga0207674_10028888
283 Ga0268266_10068241
284 Ga0265337_1000067
285 Ga0265337_1000102
286 Ga0265337_1002654
287 Ga0265326_10006343
288 Ga0265319_1000001
289 Ga0265323_10000212
290 Ga0265323_10005405
291 Ga0265322_10007217
292 Ga0265336_10003135
293 Ga0265338_10000242
294 Ga0265338_10000279
295 Ga0265338_10000483
296 Ga0265338_10000848
297 Ga0265338_10001348
298 Ga0265338_10002676
299 Ga0265338_10004798
300 Ga0265338_10005361
301 Ga0265338_10005775
302 Ga0265338_10007736
303 Ga0265338_10008485
304 Ga0265338_10014274
305 Ga0265338_10030339
306 Ga0265338_10035240
307 Ga0265338_10043944
308 Ga0265338_10046283
309 Ga0265338_10100551
310 Ga0265324_10000768
311 Ga0265324_10001547
312 Ga0265324_10009113
313 Ga0265324_10009326
314 Ga0265324_10019197
315 Ga0265332_10029359
316 Ga0265328_10001693
317 Ga0265320_10000711
318 Ga0265320_10000870
319 Ga0265320_10003259
320 Ga0265320_10011674
321 Ga0265320_10014616
322 Ga0265329_10000388
323 Ga0265340_10006942
324 Ga0265340_10007071
325 Ga0265327_10000767
326 Ga0265327_10005913
327 Ga0265316_10004114
328 Ga0265316_10008300
329 Ga0265316_10019865
330 Ga0265316_10037724
331 Ga0265316_10063834
332 Ga0265316_10080569
333 Ga0265313_10003853
334 Ga0265313_10018296
335 Ga0265314_10000020
336 Ga0265314_10055145
337 Ga0265314_10062789
338 Ga0265342_10009059
339 Ga0265342_10018821
340 Ga0373928_0000011
341 Ga0373929_0000882
342 Ga0373944_0000019
343 Ga0373949_0002304
344 Ga0373932_0000001
345 Ga0373954_0014848
346 Ga0373954_0029458
347 Ga0373962_0000055
348 Ga0373931_0000004
349 Ga0373927_0014667
350 Ga0373947_0011606
351 Ga0373947_0012154
352 Ga0373937_0057216
353 Ga0373937_0123281
354 Ga0373925_0000046
355 Ga0373925_0027490
356 Ga0395905_0068840
357 Ga0451577_0000910
358 Ga0451577_0021200
359 Ga0451577_0150628
360 Ga0453684_0000389
361 Ga0453684_0010015
362 Ga0453684_0034060
363 Ga0453684_0086709
364 Ga0453684_0124628
365 Ga0451576_0013218
366 Ga0451576_0075174
367 Ga0451576_0143023
368 Ga0451576_0160969
369 Ga0451576_0161514
370 Ga0451576_0353512
371 Ga0495592_0000034
372 Ga0495662_0040864
373 Ga0495618_0008599
374 Ga0495628_0002699
375 Ga0495630_0000318
376 Ga0495630_0002324
377 Ga0495630_0015015
378 Ga0495630_0032219
379 Ga0495630_0056138
380 Ga0495666_0020774
381 Ga0495640_0006707
382 Ga0495586_0000205
383 Ga0495586_0001357
384 Ga0495586_0002739
385 Ga0495586_0010434
386 Ga0495645_0001374
387 Ga0495634_0007562
388 Ga0495646_0098037
389 Ga0495658_0018530
390 Ga0495624_0077008
391 Ga0495674_0008889
392 Ga0495674_0020048
393 Ga0495676_0042505
394 Ga0495680_0027235
395 Ga0496106_0029656
396 Ga0496108_0236110
397 Ga0501032_0038293
398 Ga0501033_0010461
399 Ga0501033_0021433
400 Ga0501034_0155742
401 Ga0501047_0055741
402 Ga0501035_0022297
403 Ga0501035_0065424
404 Ga0501044_0000158
405 Ga0501044_0020991
406 nmdc:mga09592_24608_c1
407 nmdc:mga06r32_30354_c1
408 Ga0500636_0065271

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00919

UPF0004

Uncharacterized protein family UPF0004

12

112

0.95

PF18693

TRAM_2

TRAM domain

563

614

0.92

PF04055

Radical_SAM

Radical SAM superfamily

275

469

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
2qgq-assembly4.cif.gz_D crystal structure of tm_1862 from thermotoga maritima. northeast structural genomics consortium target vr77 0.9038 204 501
2qgq-assembly1.cif.gz_A crystal structure of tm_1862 from thermotoga maritima. northeast structural genomics consortium target vr77 0.9008 205 501
2qgq-assembly4.cif.gz_D crystal structure of tm_1862 from thermotoga maritima. northeast structural genomics consortium target vr77 0.8814 204 501
4jc0-assembly2.cif.gz_B crystal structure of thermotoga maritima holo rimo in complex with pentasulfide, northeast structural genomics consortium target vr77 0.8795 30 501
2qgq-assembly1.cif.gz_A crystal structure of tm_1862 from thermotoga maritima. northeast structural genomics consortium target vr77 0.8725 205 501
ID Description Score Start End Superfamily
4jc0B03 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA; 0.9542 329 443 3.30.750.200
af_F1LV76_14_128_3.30.750.200 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA; 0.9403 330 439 3.30.750.200
af_Q2FZ02_212_444_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.9239 205 441 3.80.30.20
af_Q2FXZ6_140_373_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.9191 201 441 3.80.30.20
2qgqC01 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.9092 201 443 3.80.30.20
ID Description Score Start End GO Terms
AF-A0A6L6BR70-F1-model_v4 30S ribosomal protein S12 methylthiotransferase RimO 0.9772 27 126 GO:0005829
GO:0005840
GO:0035599
GO:0046872
GO:0051539
AF-A0A836RG07-F1-model_v4 TRAM domain-containing protein 0.9762 358 501 GO:0005829
GO:0035599
GO:0046872
GO:0051539
AF-A0A3D2NQ02-F1-model_v4 30S ribosomal protein S12 methylthiotransferase RimO 0.9694 370 501 GO:0005829
GO:0005840
GO:0035599
GO:0046872
GO:0051539
AF-A0A349Z8I5-F1-model_v4 30S ribosomal protein S12 methylthiotransferase RimO 0.9652 376 501 GO:0005829
GO:0005840
GO:0035599
GO:0046872
GO:0051539
AF-A0A3B8SL93-F1-model_v4 30S ribosomal protein S12 methylthiotransferase RimO 0.965 301 477 GO:0005829
GO:0005840
GO:0035599
GO:0051539

Map