F312318

General Info

Members Datasets Scaffolds Average Seq Length
204 124 406 313

Family's Representative Sequence

Representative Sequence 3300006028|Ga0070717_10088403|Ga0070717_100884032
Length 363
Sequence MEPERSAIPPSPKPVGVIEQRMQEHYEASSPPVALRSASSRDVQEASQPGLLQPKHPKRRRGSIWKQNSTLLIMTIPGLLLLFVFAYLPMFGIIIAFKDYRASQGILGSAWVGFQNFFYLFQTDDARRIVFNTLFMNALFIMTVLVASLGIALLLHEARQSNKWLARFYQSTLFFPYLFSYVIINYFVFALLNTSNGLVNHLLMGLGMPAINWYASPQDWPVILTLVNLWKNAGFWSIVYLAGIIAINPEYYEAASLDGATTWQKIWYITLPMLKPLIIINVLLSIGKIFYADFGLFYQVPRNLPQLYPTTDVIDTYVYRTLTALGDVGMASAAGAFQAIVGFVLVLGSNWLVRRTDPERALF

Samples

Sample ID Description Type Environment
1 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
5 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
6 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
7 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
11 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
12 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
13 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
14 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
15 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
16 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
17 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
18 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
19 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
20 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
21 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
22 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
23 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
24 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
33 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
34 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
35 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
36 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
37 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
38 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
39 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
40 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
41 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
42 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
43 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
44 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
45 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
46 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
47 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
48 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
49 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
50 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
51 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
52 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
53 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
54 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
55 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
56 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
57 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
58 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
59 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
60 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
61 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
62 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
63 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
64 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
65 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
67 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
79 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
80 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
81 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
82 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
83 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
84 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
85 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
86 2571042143 Paenibacillus graminis RSA19 Isolate Unclassified
87 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
88 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
89 2600255286 Paenibacillus sp. NFR01 Isolate Rhizoplane
90 2643221629 Devosia sp. Root105 Isolate Unclassified
91 2643221662 Devosia sp. Root413D1 Isolate Unclassified
92 2643221676 Paenibacillus sp. Root444D2 Isolate Unclassified
93 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
94 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
95 2738543027 Promicromonospora sp. CF082 Isolate Unclassified
96 2791355222 Paenibacillus oryzae 1DrF-4 Isolate Unclassified
97 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
98 2857453340 Paenibacillus sp. R-74130 Isolate Unclassified
99 2857472729 Cohnella sp. R-74144 Isolate Unclassified
100 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
101 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
102 2887443736 Ruania rhizosphaerae LNNU 22110 Isolate Rhizosphere
103 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
104 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
105 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
106 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
107 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
108 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
109 2945941187 Arthrobacter pascens W1I14 Isolate Rhizosphere
110 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
111 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
112 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
113 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
114 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
115 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
116 3006988479 Bacillus sp. FJAT-49711 Isolate Rhizosphere
117 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
118 8007371054 Clostridium sp. YIM B02515 Isolate Unclassified
119 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere
120 8054107350 Arthrobacter rhizosphaerae CCNWLXL 1-35 Isolate Rhizosphere
121 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
122 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
123 8056533031 Paenibacillus qinlingensis TEGT-2 Isolate Unclassified
124 8057977335 Paenibacillus oenotherae DT7-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 60.78
Metatranscriptomes 0
Isolates 39.22

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.33
Nodule 0.49
Rhizoplane 1.47
Rhizosphere 46.57
Stem 0
Stem Tuber 0
Unclassified 1.47

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070717_10088403 3300006028 Bacteria 2611
2 JGI24740J21852_10003953 3300001979 Bacteria 6433
3 JGI24739J22299_10016566 3300001989 Bacteria 2667
4 JGI24737J22298_10006883 3300001990 Bacteria 3859
5 JGI24737J22298_10007252 3300001990 Bacteria 3750
6 JGI24735J21928_10018874 3300002067 Bacteria 2124
7 Ga0055538_1000429 3300003751 Bacteria 16249
8 Ga0055538_1001004 3300003751 Bacteria 6500
9 Ga0055541_1004180 3300003841 Bacteria 2648
10 Ga0070668_100188072 3300005347 Bacteria 1690
11 Ga0070667_100099682 3300005367 Bacteria 2508
12 Ga0068857_100126702 3300005577 Bacteria 2301
13 Ga0068856_100131154 3300005614 Bacteria 2511
14 Ga0070712_100036719 3300006175 Unclassified 3335
15 Ga0105237_10000122 3300009545 Bacteria 108419
16 Ga0105239_10000441 3300010375 Bacteria 60579
17 Ga0105246_10031586 3300011119 Bacteria 3506
18 Ga0157369_10309620 3300013105 Bacteria 1642
19 Ga0157374_10141700 3300013296 Bacteria 2334
20 Ga0157376_10198290 3300014969 Bacteria 1845
21 Ga0209784_100136 3300025224 Bacteria 69983
22 Ga0209784_100416 3300025224 Bacteria 18898
23 Ga0209566_100024 3300025225 Bacteria 396318
24 Ga0209566_100054 3300025225 Bacteria 221422
25 Ga0209566_100108 3300025225 Bacteria 119382
26 Ga0209566_102401 3300025225 Bacteria 3508
27 Ga0209147_106241 3300025229 Bacteria 1675
28 Ga0209677_100764 3300025253 Bacteria 16304
29 Ga0209025_1003797 3300025294 Bacteria 13814
30 Ga0209025_1003921 3300025294 Bacteria 13393
31 Ga0209025_1007640 3300025294 Bacteria 7998
32 Ga0207655_1056867 3300025728 Bacteria 1540
33 Ga0207647_10042911 3300025904 Bacteria 2833
34 Ga0207684_10039744 3300025910 Unclassified 3988
35 Ga0207671_10000249 3300025914 Bacteria 80726
36 Ga0207671_10138274 3300025914 Bacteria 1875
37 Ga0207646_10000117 3300025922 Bacteria 110288
38 Ga0207658_10086538 3300025986 Bacteria 2417
39 Ga0207674_10180749 3300026116 Bacteria 2061
40 Ga0268266_10000326 3300028379 Bacteria 75003
41 Ga0265338_10083311 3300028800 Bacteria 2675
42 Ga0265320_10024578 3300031240 Bacteria 3185
43 Ga0265316_10047904 3300031344 Bacteria 3378
44 Ga0307408_100116145 3300031548 Bacteria 2065
45 Ga0307518_10111640 3300031838 Bacteria 1947
46 Ga0307412_10010347 3300031911 Bacteria 5371
47 Ga0307507_10099523 3300033179 Bacteria 2442
48 Ga0395899_0006946 3300037312 Bacteria 8768
49 Ga0395899_0085436 3300037312 Unclassified 2292
50 Ga0395900_0011806 3300037418 Bacteria 8934
51 Ga0395900_0123689 3300037418 Bacteria 2653
52 Ga0395901_0330109 3300038443 Bacteria 1577
53 Ga0400483_261194 3300039062 Bacteria 2620
54 Ga0439442_000005 3300042002 Bacteria 63657
55 Ga0439449_0006456 3300042007 Bacteria 4485
56 Ga0439462_0003675 3300042015 Bacteria 3700
57 Ga0466969_0059644 3300044656 Bacteria 1855
58 Ga0466963_0399822 3300044694 Bacteria 969
59 Ga0453684_0014284 3300044712 Bacteria 12734
60 Ga0453684_0087062 3300044712 Bacteria 3873
61 Ga0453684_0189279 3300044712 Bacteria 2408
62 Ga0453684_0434456 3300044712 Bacteria 1464
63 Ga0466968_0001568 3300044735 Bacteria 8241
64 Ga0466959_0001906 3300045049 Bacteria 13124
65 Ga0466959_0101492 3300045049 Bacteria 2059
66 Ga0495590_0033189 3300046457 Bacteria 1805
67 Ga0495591_039386 3300046458 Bacteria 1355
68 Ga0495660_0145443 3300046810 Bacteria 1175
69 Ga0496115_0002220 3300048918 Bacteria 13920
70 Ga0496116_0006528 3300048919 Bacteria 10568
71 Ga0496116_0013719 3300048919 Bacteria 6515
72 Ga0496116_0016426 3300048919 Bacteria 5791
73 Ga0496118_0017086 3300048921 Bacteria 6623
74 Ga0496119_0000033 3300048922 Bacteria 218976
75 Ga0496119_0004556 3300048922 Bacteria 13719
76 Ga0496120_0000171 3300048923 Bacteria 110335
77 Ga0496120_0005206 3300048923 Bacteria 10482
78 Ga0496120_0033249 3300048923 Plasmid 3100
79 Ga0496121_0226671 3300048924 Bacteria 1312
80 Ga0496122_0000006 3300048925 Bacteria 625811
81 Ga0496122_0000052 3300048925 Bacteria 260977
82 Ga0496122_0000061 3300048925 Bacteria 243819
83 Ga0496122_0006137 3300048925 Bacteria 13985
84 Ga0496122_0007309 3300048925 Bacteria 12335
85 Ga0496122_0015212 3300048925 Bacteria 7364
86 Ga0496122_0095151 3300048925 Bacteria 2014
87 Ga0496122_0133498 3300048925 Bacteria 1570
88 Ga0496122_0133626 3300048925 Bacteria 1569
89 Ga0496122_0276482 3300048925 Bacteria 921
90 Ga0496123_0000193 3300048926 Bacteria 123847
91 Ga0496123_0003541 3300048926 Bacteria 17371
92 Ga0496123_0008687 3300048926 Bacteria 9281
93 Ga0496123_0066605 3300048926 Bacteria 2280
94 Ga0496123_0122468 3300048926 Bacteria 1459
95 Ga0496124_0003819 3300048927 Bacteria 18064
96 Ga0496124_0084970 3300048927 Bacteria 2594
97 Ga0496125_0000043 3300048928 Bacteria 301512
98 Ga0496125_0022037 3300048928 Bacteria 5923
99 Ga0496125_0164360 3300048928 Bacteria 1502
100 Ga0496126_0000016 3300048929 Bacteria 625843
101 Ga0496126_0000145 3300048929 Bacteria 163853
102 Ga0496126_0004709 3300048929 Bacteria 16113
103 Ga0496126_0024156 3300048929 Bacteria 5872
104 Ga0496126_0084705 3300048929 Bacteria 2795
105 Ga0501031_0002857 3300049568 Bacteria 11028
106 Ga0501033_0000416 3300049570 Bacteria 40818
107 Ga0501034_0001485 3300049571 Bacteria 30934
108 Ga0501036_0001974 3300049572 Bacteria 15913
109 Ga0501037_0000528 3300049573 Bacteria 30599
110 Ga0501038_0001588 3300049574 Bacteria 21087
111 Ga0501039_0090982 3300049575 Bacteria 2378
112 Ga0501042_0006263 3300049578 Bacteria 7726
113 Ga0501043_0000771 3300049579 Bacteria 28438
114 Ga0501046_0003047 3300049580 Bacteria 15483
115 Ga0501047_0000361 3300049581 Bacteria 51611
116 Ga0501047_0151209 3300049581 Bacteria 2197
117 Ga0501048_0000686 3300049582 Bacteria 24575
118 Ga0501035_0000628 3300049822 Bacteria 38847
119 Ga0501044_0000929 3300049823 Bacteria 35197
120 Ga0495619_0209861 3300053085 Bacteria 1348
121 Ga0500600_0031299 3300053149 Bacteria 3127
122 Ga0500634_0000001 3300053161 Bacteria 258285
123 Ga0501084_0347362 3300054114 Bacteria 1253
124 2512731522 2512564039 Bacteria 8739048
125 2524191748 2524023129 Bacteria 6762600
126 2550899209 2548877040 Bacteria 7507281
127 2571527231 2571042143 Bacteria 6986194
128 2571529270 2571042143 Bacteria 6986194
129 2587739321 2585428059 Bacteria 8696589
130 2587739721 2585428059 Bacteria 8696589
131 2587744831 2585428059 Bacteria 8696589
132 2595315473 2593339198 Bacteria 7267884
133 2595317037 2593339198 Bacteria 7267884
134 2595317655 2593339198 Bacteria 7267884
135 2595318306 2593339198 Bacteria 7267884
136 2595318886 2593339198 Bacteria 7267884
137 2601639304 2600255286 Bacteria 5390125
138 2601641628 2600255286 Bacteria 5390125
139 2644168598 2643221629 Bacteria 5850260
140 2644169400 2643221629 Bacteria 5850260
141 2644350108 2643221662 Bacteria 5851492
142 2644350797 2643221662 Bacteria 5851492
143 2644426329 2643221676 Bacteria 8119172
144 2644427249 2643221676 Bacteria 8119172
145 2728531963 2728368933 Bacteria 7044283
146 2728532837 2728368933 Bacteria 7044283
147 2738694060 2738541272 Bacteria 6848551
148 2739327359 2738543027 Bacteria 6409078
149 2793184120 2791355222 Bacteria 5898266
150 2837273531 2837268691 Bacteria 7850704
151 2857453411 2857453340 Bacteria 8090534
152 2857453571 2857453340 Bacteria 8090534
153 2857454509 2857453340 Bacteria 8090534
154 2857456019 2857453340 Bacteria 8090534
155 2857456345 2857453340 Bacteria 8090534
156 2857476150 2857472729 Bacteria 6568124
157 2857478203 2857472729 Bacteria 6568124
158 2857478366 2857472729 Bacteria 6568124
159 2865006422 2865002811 Bacteria 6333767
160 2868095900 2868088558 Bacteria 7609351
161 2887444919 2887443736 Bacteria 4426037
162 2888580075 2888578766 Bacteria 6743310
163 2889053189 2889049205 Bacteria 7524325
164 2889054634 2889049205 Bacteria 7524325
165 2904118353 2904113452 Bacteria 7796941
166 2904757774 2904755435 Bacteria 7986759
167 2904757804 2904755435 Bacteria 7986759
168 2919426588 2919425241 Bacteria 8055701
169 2938651341 2938649242 Bacteria 7118381
170 2945943231 2945941187 Bacteria 4682474
171 2968561909 2968558590 Bacteria 6956864
172 2971405021 2971403814 Bacteria 7370929
173 2971407475 2971403814 Bacteria 7370929
174 2971410073 2971403814 Bacteria 7370929
175 2971411003 2971410472 Bacteria 8311090
176 2971413192 2971410472 Bacteria 8311090
177 2971415634 2971410472 Bacteria 8311090
178 2971416053 2971410472 Bacteria 8311090
179 2980182400 2980182181 Bacteria 9454109
180 2980182735 2980182181 Bacteria 9454109
181 2980186132 2980182181 Bacteria 9454109
182 2980188605 2980182181 Bacteria 9454109
183 2980188700 2980182181 Bacteria 9454109
184 2980189590 2980182181 Bacteria 9454109
185 2988225629 2988225383 Bacteria 7221625
186 2996634092 2996632988 Bacteria 6921523
187 3006991054 3006988479 Bacteria 4767936
188 8002318833 8002317523 Bacteria 8051857
189 8002319230 8002317523 Bacteria 8051857
190 8002321880 8002317523 Bacteria 8051857
191 8007371569 8007371054 Bacteria 4849201
192 8007372181 8007371054 Bacteria 4849201
193 8046994448 8046991243 Bacteria 8497463
194 8046996451 8046991243 Bacteria 8497463
195 8046996540 8046991243 Bacteria 8497463
196 8054112039 8054107350 Bacteria 5022511
197 8054472053 8054465665 Bacteria 7323556
198 8054802305 8054795415 Bacteria 9785225
199 8056534166 8056533031 Bacteria 8964429
200 8056537755 8056533031 Bacteria 8964429
201 8056540242 8056533031 Bacteria 8964429
202 8056540415 8056533031 Bacteria 8964429
203 8057977713 8057977335 Bacteria 5694872
204 Ga0070717_10088403
205 JGI24740J21852_10003953
206 JGI24739J22299_10016566
207 JGI24737J22298_10006883
208 JGI24737J22298_10007252
209 JGI24735J21928_10018874
210 Ga0055538_1000429
211 Ga0055538_1001004
212 Ga0055541_1004180
213 Ga0070668_100188072
214 Ga0070667_100099682
215 Ga0068857_100126702
216 Ga0068856_100131154
217 Ga0070712_100036719
218 Ga0105237_10000122
219 Ga0105239_10000441
220 Ga0105246_10031586
221 Ga0157369_10309620
222 Ga0157374_10141700
223 Ga0157376_10198290
224 Ga0209784_100136
225 Ga0209784_100416
226 Ga0209566_100024
227 Ga0209566_100054
228 Ga0209566_100108
229 Ga0209566_102401
230 Ga0209147_106241
231 Ga0209677_100764
232 Ga0209025_1003797
233 Ga0209025_1003921
234 Ga0209025_1007640
235 Ga0207655_1056867
236 Ga0207647_10042911
237 Ga0207684_10039744
238 Ga0207671_10000249
239 Ga0207671_10138274
240 Ga0207646_10000117
241 Ga0207658_10086538
242 Ga0207674_10180749
243 Ga0268266_10000326
244 Ga0265338_10083311
245 Ga0265320_10024578
246 Ga0265316_10047904
247 Ga0307408_100116145
248 Ga0307518_10111640
249 Ga0307412_10010347
250 Ga0307507_10099523
251 Ga0395899_0006946
252 Ga0395899_0085436
253 Ga0395900_0011806
254 Ga0395900_0123689
255 Ga0395901_0330109
256 Ga0400483_261194
257 Ga0439442_000005
258 Ga0439449_0006456
259 Ga0439462_0003675
260 Ga0466969_0059644
261 Ga0466963_0399822
262 Ga0453684_0014284
263 Ga0453684_0087062
264 Ga0453684_0189279
265 Ga0453684_0434456
266 Ga0466968_0001568
267 Ga0466959_0001906
268 Ga0466959_0101492
269 Ga0495590_0033189
270 Ga0495591_039386
271 Ga0495660_0145443
272 Ga0496115_0002220
273 Ga0496116_0006528
274 Ga0496116_0013719
275 Ga0496116_0016426
276 Ga0496118_0017086
277 Ga0496119_0000033
278 Ga0496119_0004556
279 Ga0496120_0000171
280 Ga0496120_0005206
281 Ga0496120_0033249
282 Ga0496121_0226671
283 Ga0496122_0000006
284 Ga0496122_0000052
285 Ga0496122_0000061
286 Ga0496122_0006137
287 Ga0496122_0007309
288 Ga0496122_0015212
289 Ga0496122_0095151
290 Ga0496122_0133498
291 Ga0496122_0133626
292 Ga0496122_0276482
293 Ga0496123_0000193
294 Ga0496123_0003541
295 Ga0496123_0008687
296 Ga0496123_0066605
297 Ga0496123_0122468
298 Ga0496124_0003819
299 Ga0496124_0084970
300 Ga0496125_0000043
301 Ga0496125_0022037
302 Ga0496125_0164360
303 Ga0496126_0000016
304 Ga0496126_0000145
305 Ga0496126_0004709
306 Ga0496126_0024156
307 Ga0496126_0084705
308 Ga0501031_0002857
309 Ga0501033_0000416
310 Ga0501034_0001485
311 Ga0501036_0001974
312 Ga0501037_0000528
313 Ga0501038_0001588
314 Ga0501039_0090982
315 Ga0501042_0006263
316 Ga0501043_0000771
317 Ga0501046_0003047
318 Ga0501047_0000361
319 Ga0501047_0151209
320 Ga0501048_0000686
321 Ga0501035_0000628
322 Ga0501044_0000929
323 Ga0495619_0209861
324 Ga0500600_0031299
325 Ga0500634_0000001
326 Ga0501084_0347362
327 2512731522
328 2524191748
329 2550899209
330 2571527231
331 2571529270
332 2587739321
333 2587739721
334 2587744831
335 2595315473
336 2595317037
337 2595317655
338 2595318306
339 2595318886
340 2601639304
341 2601641628
342 2644168598
343 2644169400
344 2644350108
345 2644350797
346 2644426329
347 2644427249
348 2728531963
349 2728532837
350 2738694060
351 2739327359
352 2793184120
353 2837273531
354 2857453411
355 2857453571
356 2857454509
357 2857456019
358 2857456345
359 2857476150
360 2857478203
361 2857478366
362 2865006422
363 2868095900
364 2887444919
365 2888580075
366 2889053189
367 2889054634
368 2904118353
369 2904757774
370 2904757804
371 2919426588
372 2938651341
373 2945943231
374 2968561909
375 2971405021
376 2971407475
377 2971410073
378 2971411003
379 2971413192
380 2971415634
381 2971416053
382 2980182400
383 2980182735
384 2980186132
385 2980188605
386 2980188700
387 2980189590
388 2988225629
389 2996634092
390 3006991054
391 8002318833
392 8002319230
393 8002321880
394 8007371569
395 8007372181
396 8046994448
397 8046996451
398 8046996540
399 8054112039
400 8054472053
401 8054802305
402 8056534166
403 8056537755
404 8056540242
405 8056540415
406 8057977713

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00528

BPD_transp_1

Binding-protein-dependent transport system inner membrane component

144

360

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
4xtc-assembly1.cif.gz_M crystal structure of bacterial alginate abc transporter in complex with alginate pentasaccharide-bound periplasmic protein 0.876 11 307
4tqu-assembly1.cif.gz_M crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.8617 8 306
4tqv-assembly4.cif.gz_M crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.8577 8 306
4tqu-assembly1.cif.gz_M crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.8533 8 306
4xtc-assembly1.cif.gz_M crystal structure of bacterial alginate abc transporter in complex with alginate pentasaccharide-bound periplasmic protein 0.8532 11 307
ID Description Score Start End Superfamily
4tquM01 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9187 59 306 1.10.3720.10
4tquM01 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9081 59 306 1.10.3720.10
af_O53484_49_294_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8953 62 308 1.10.3720.10
af_I6XFF3_60_302_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8918 61 304 1.10.3720.10
af_O53484_49_294_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8784 62 308 1.10.3720.10
ID Description Score Start End GO Terms
AF-A0A328UEB0-F1-model_v4 Sugar ABC transporter permease 0.9735 40 312 GO:0005886
GO:0055085
AF-A0A4Q9DEY8-F1-model_v4 Sugar ABC transporter permease 0.97 37 312 GO:0005886
GO:0055085
AF-A0A2R5F5M2-F1-model_v4 Sugar ABC transporter permease 0.9648 44 312 GO:0005886
GO:0055085
AF-A0A8A5ZJQ4-F1-model_v4 deleted 0.9635 39 312
AF-A0A4Q9DEY8-F1-model_v4 Sugar ABC transporter permease 0.9631 37 312 GO:0005886
GO:0055085

Map