F311579

General Info

Members Datasets Scaffolds Average Seq Length
203 131 406 873

Family's Representative Sequence

Representative Sequence 3300045976|Ga0466967_0000108|Ga0466967_0000108_3090_6023
Length 949
Sequence MQLSARRPEPPARLLERVEAFAARLLPNPDDRRPRLRRRDAHRTSGIVFAITSVTICVRKMEPEIVGRDAELAAVRAFVERTDTVPAALVLEGEPGIGKSTLWLAAVEHAQTRGISVLSARPAEAEKGLAHVGLSDLLDNVFDDVVPELSQPRRRALETALLRKEAAEETIDHRALAVAVYDALQQLGKRSRLLVAIDDAQWLDASTSSVLAFALRRVQASSVRLLLARRTEPTELEQPLGGWRLECTSVGPLSVGALHRLLQDRLGRVFARQTLLRIHERSGGNPFFALELARALDADVGPFDPLPVPETLDELVRGRLAGLPGATHDALAIASALGAPSESLLRRLGISAGALEPAVEAHVIERDRDTIRFTHPLLSSVLYNDLGSRRTEVHVRIAAVVDDSVLRARHLALATDEPDVELAEGAWRLTPPSDASDRRLRAIAAARAHRAAGEWTRARRILSDLLEEPGIGAVRAEALFLLAELESLDRAIVLLEEASREASSRPALQSSIQCRLAWTARFTKGFDGSLEHARAALRLADEVGDDALRIDALDMLVFLGSAVGDPETEAHAKRAHVIALATGDEGLLRRARLLQLGGSEKKDRSAARALLEREYEESRERDELSAAEALHSLAWVELWAGKWDRAADYAERAYDLMTQYGLEVPWAHLPIAVVAAHRGRLELARVHSERSLQLGEEQFGQHTPVHLGTLGFVAAQSGDPQTALRWFGEAEAVTSRLGWRVASRRWWVADQIEALLELDRVDEALRVLEAWDGERKPDDDGVLADVTRCRGLIEAALGNVASAVALLEDAVAQHAAAGDSFGRARALLALGVVKRRAARDAIEAALAGFEELGAATWVERSRSELGRIGGRTREEGLTAAERRVATLVAEGRTNREVAAALFLGQRTVETHLSHVYAKLGIRSRAELAGAYKPDPVPAEQSSGDLTISS

Samples

Sample ID Description Type Environment
1 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
11 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
14 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
15 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
16 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
17 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
18 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
21 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
22 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
23 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
24 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
25 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
26 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
27 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
28 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
29 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
30 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
31 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
32 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
33 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
34 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
35 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
36 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
37 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
38 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
39 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
40 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
41 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
42 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
43 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
44 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
45 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
46 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
47 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
48 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
49 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
50 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
52 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
53 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
54 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
55 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
56 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
57 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
58 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
59 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
60 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
61 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
62 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
63 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
64 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
65 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
66 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
85 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
86 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
87 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
88 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
89 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
90 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
91 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
92 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
93 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
94 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
95 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
96 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
97 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
98 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
99 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
100 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
101 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
102 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
103 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
104 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
105 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
106 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
107 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
108 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
109 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
110 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
111 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
112 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
113 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
114 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
115 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
116 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
121 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
122 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
123 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
124 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
125 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
126 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
127 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
128 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
129 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
130 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
131 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.51
Metatranscriptomes 0.49
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 13.79
Rhizosphere 85.71
Stem 0
Stem Tuber 0
Unclassified 0.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466967_0000108 3300045976 Bacteria 30356
2 Ga0070658_10053268 3300005327 Bacteria 3283
3 Ga0070683_100005463 3300005329 Bacteria 10618
4 Ga0070683_100041959 3300005329 Bacteria 4211
5 Ga0070680_100042694 3300005336 Bacteria 3680
6 Ga0070682_100007934 3300005337 Bacteria 5972
7 Ga0068868_100018001 3300005338 Bacteria 5273
8 Ga0070661_100037166 3300005344 Bacteria 3542
9 Ga0070668_100013713 3300005347 Bacteria 6053
10 Ga0070671_100033008 3300005355 Bacteria 4279
11 Ga0070688_100003350 3300005365 Bacteria 8215
12 Ga0070703_10000002 3300005406 Bacteria 167332
13 Ga0070714_100009128 3300005435 Bacteria 7779
14 Ga0070714_100014206 3300005435 Bacteria 6394
15 Ga0070701_10002318 3300005438 Bacteria 7308
16 Ga0070711_100004585 3300005439 Bacteria 8177
17 Ga0070700_100000684 3300005441 Bacteria 16765
18 Ga0070708_100006609 3300005445 Bacteria 9229
19 Ga0070708_100023235 3300005445 Bacteria 5269
20 Ga0070678_100003222 3300005456 Bacteria 9060
21 Ga0070678_100011232 3300005456 Bacteria 5514
22 Ga0070662_100025079 3300005457 Bacteria 4115
23 Ga0070681_10005979 3300005458 Bacteria 11789
24 Ga0068867_100000986 3300005459 Bacteria 19422
25 Ga0070706_100000593 3300005467 Bacteria 41959
26 Ga0070706_100012288 3300005467 Bacteria 7934
27 Ga0070707_100003135 3300005468 Bacteria 15637
28 Ga0070707_100072611 3300005468 Bacteria 3317
29 Ga0070698_100004036 3300005471 Bacteria 16156
30 Ga0070699_100018597 3300005518 Bacteria 5969
31 Ga0070679_100030308 3300005530 Bacteria 5342
32 Ga0070679_100049783 3300005530 Bacteria 4173
33 Ga0070684_100017138 3300005535 Bacteria 5937
34 Ga0068853_100034461 3300005539 Bacteria 4297
35 Ga0070672_100021126 3300005543 Bacteria 4759
36 Ga0070686_100000523 3300005544 Bacteria 22983
37 Ga0070696_100001749 3300005546 Bacteria 14248
38 Ga0070693_100025267 3300005547 Bacteria 3195
39 Ga0070704_100012443 3300005549 Bacteria 5257
40 Ga0068856_100017429 3300005614 Bacteria 6959
41 Ga0068856_100028575 3300005614 Bacteria 5446
42 Ga0070702_100022793 3300005615 Bacteria 3317
43 Ga0068851_10013642 3300005834 Bacteria 3847
44 Ga0068870_10009099 3300005840 Bacteria 4499
45 Ga0068863_100068104 3300005841 Bacteria 3367
46 Ga0081455_10037225 3300005937 Bacteria 4324
47 Ga0081540_1000879 3300005983 Bacteria 27145
48 Ga0081540_1002725 3300005983 Bacteria 14372
49 Ga0070717_10000842 3300006028 Bacteria 20302
50 Ga0070712_100018552 3300006175 Bacteria 4522
51 Ga0097621_100018941 3300006237 Bacteria 5273
52 Ga0075428_100038428 3300006844 Bacteria 5267
53 Ga0075431_100024389 3300006847 Bacteria 6198
54 Ga0075433_10001444 3300006852 Bacteria 17538
55 Ga0075433_10008694 3300006852 Bacteria 8101
56 Ga0075433_10038174 3300006852 Bacteria 4147
57 Ga0075434_100005673 3300006871 Bacteria 11389
58 Ga0075434_100010286 3300006871 Bacteria 8767
59 Ga0068865_100000286 3300006881 Bacteria 27770
60 Ga0075436_100009231 3300006914 Bacteria 6749
61 Ga0075436_100010324 3300006914 Bacteria 6397
62 Ga0075436_100017623 3300006914 Bacteria 4889
63 Ga0075435_100000090 3300007076 Bacteria 48455
64 Ga0075435_100013911 3300007076 Bacteria 6002
65 Ga0111539_10059754 3300009094 Bacteria 4519
66 Ga0111539_10088528 3300009094 Bacteria 3638
67 Ga0111539_10095874 3300009094 Bacteria 3484
68 Ga0105245_10002363 3300009098 Bacteria 17055
69 Ga0105245_10012042 3300009098 Bacteria 7521
70 Ga0114129_10023828 3300009147 Bacteria 8676
71 Ga0114129_10043799 3300009147 Bacteria 6298
72 Ga0114129_10064668 3300009147 Bacteria 5105
73 Ga0114129_10079738 3300009147 Bacteria 4552
74 Ga0105243_10003355 3300009148 Bacteria 12986
75 Ga0105241_10014051 3300009174 Bacteria 5868
76 Ga0105242_10005827 3300009176 Bacteria 9491
77 Ga0105249_10004882 3300009553 Bacteria 11574
78 Ga0105239_10004320 3300010375 Bacteria 17037
79 Ga0105239_10076578 3300010375 Bacteria 3679
80 Ga0157371_10022331 3300013102 Bacteria 4639
81 Ga0157369_10019168 3300013105 Bacteria 7656
82 Ga0157374_10006706 3300013296 Bacteria 9784
83 Ga0157378_10004820 3300013297 Bacteria 11823
84 Ga0163162_10010276 3300013306 Bacteria 9096
85 Ga0157375_10010067 3300013308 Bacteria 8314
86 Ga0157380_10039843 3300014326 Bacteria 3656
87 Ga0206353_10314511 3300020082 Unclassified 3316
88 Ga0207653_10002148 3300025885 Bacteria 6282
89 Ga0207643_10000027 3300025908 Bacteria 99423
90 Ga0207643_10009918 3300025908 Bacteria 5118
91 Ga0207705_10030855 3300025909 Bacteria 3825
92 Ga0207684_10000078 3300025910 Bacteria 181899
93 Ga0207684_10019221 3300025910 Bacteria 5845
94 Ga0207693_10001432 3300025915 Bacteria 21142
95 Ga0207693_10037975 3300025915 Bacteria 3794
96 Ga0207646_10004246 3300025922 Bacteria 15659
97 Ga0207646_10007051 3300025922 Bacteria 11496
98 Ga0207646_10044015 3300025922 Bacteria 4007
99 Ga0207687_10020012 3300025927 Bacteria 4438
100 Ga0207664_10000776 3300025929 Bacteria 21568
101 Ga0207706_10017269 3300025933 Bacteria 6502
102 Ga0207706_10037817 3300025933 Bacteria 4283
103 Ga0207709_10001144 3300025935 Bacteria 19343
104 Ga0207691_10045781 3300025940 Bacteria 4021
105 Ga0207679_10005858 3300025945 Bacteria 7718
106 Ga0207712_10007418 3300025961 Bacteria 6926
107 Ga0207678_10030015 3300026067 Bacteria 4746
108 Ga0207708_10000370 3300026075 Bacteria 35189
109 Ga0207708_10048500 3300026075 Bacteria 3233
110 Ga0207702_10001273 3300026078 Bacteria 25311
111 Ga0207702_10024796 3300026078 Bacteria 4976
112 Ga0207702_10040004 3300026078 Bacteria 3930
113 Ga0207702_10047002 3300026078 Bacteria 3635
114 Ga0207648_10002247 3300026089 Bacteria 20900
115 Ga0207683_10001015 3300026121 Bacteria 25590
116 Ga0207683_10004028 3300026121 Bacteria 12708
117 Ga0207428_10014555 3300027907 Bacteria 6824
118 Ga0307410_10002019 3300031852 Bacteria 9569
119 Ga0307406_10001309 3300031901 Bacteria 13972
120 Ga0307407_10000497 3300031903 Bacteria 12112
121 Ga0307409_100000817 3300031995 Bacteria 14299
122 Ga0307416_100000719 3300032002 Bacteria 17231
123 Ga0307414_10032827 3300032004 Bacteria 3423
124 Ga0307415_100000804 3300032126 Bacteria 14264
125 Ga0373943_0005845 3300035170 Bacteria 5527
126 Ga0373947_0003213 3300035725 Bacteria 9702
127 Ga0395899_0012876 3300037312 Bacteria 6404
128 Ga0395899_0051934 3300037312 Bacteria 3041
129 Ga0395900_0003014 3300037418 Bacteria 18323
130 Ga0395900_0013135 3300037418 Bacteria 8463
131 Ga0395900_0031507 3300037418 Bacteria 5449
132 Ga0395900_0062274 3300037418 Bacteria 3835
133 Ga0395898_0002595 3300037466 Bacteria 21110
134 Ga0395898_0006006 3300037466 Bacteria 13037
135 Ga0395898_0015776 3300037466 Bacteria 7742
136 Ga0395898_0020726 3300037466 Bacteria 6675
137 Ga0395898_0028131 3300037466 Bacteria 5637
138 Ga0395898_0029728 3300037466 Bacteria 5469
139 Ga0395898_0043164 3300037466 Bacteria 4444
140 Ga0395898_0046097 3300037466 Bacteria 4282
141 Ga0395905_0005421 3300037471 Bacteria 13033
142 Ga0395905_0006841 3300037471 Bacteria 11400
143 Ga0395905_0019881 3300037471 Bacteria 6363
144 Ga0395905_0034723 3300037471 Bacteria 4736
145 Ga0395905_0034904 3300037471 Bacteria 4722
146 Ga0395905_0037392 3300037471 Bacteria 4558
147 Ga0395901_0002200 3300038443 Bacteria 19881
148 Ga0395901_0005297 3300038443 Bacteria 13039
149 Ga0395901_0011857 3300038443 Bacteria 8837
150 Ga0395901_0021995 3300038443 Bacteria 6536
151 Ga0395901_0043396 3300038443 Bacteria 4664
152 Ga0395901_0060996 3300038443 Bacteria 3925
153 Ga0395901_0067666 3300038443 Bacteria 3720
154 Ga0451853_0626475 3300041512 Bacteria 6890
155 Ga0439446_0001624 3300042156 Bacteria 5189
156 Ga0496100_0020706 3300048903 Bacteria 3948
157 Ga0496101_0002439 3300048904 Bacteria 11431
158 Ga0496101_0008696 3300048904 Bacteria 6640
159 Ga0496101_0069029 3300048904 Bacteria 2585
160 Ga0496102_0008123 3300048905 Bacteria 8980
161 Ga0496103_0020965 3300048906 Bacteria 3929
162 Ga0496104_0001048 3300048907 Bacteria 23633
163 Ga0496104_0012997 3300048907 Bacteria 7494
164 Ga0496104_0048229 3300048907 Bacteria 4016
165 Ga0496105_0000594 3300048908 Bacteria 24087
166 Ga0496105_0040316 3300048908 Bacteria 3850
167 Ga0496106_0020039 3300048909 Bacteria 4961
168 Ga0496106_0047265 3300048909 Bacteria 3238
169 Ga0496107_0000673 3300048910 Bacteria 19356
170 Ga0496108_0028311 3300048911 Bacteria 4636
171 Ga0496108_0072082 3300048911 Bacteria 2916
172 Ga0496109_0000463 3300048912 Bacteria 34599
173 Ga0496109_0013482 3300048912 Bacteria 7092
174 Ga0496109_0035244 3300048912 Bacteria 4512
175 Ga0496110_0000563 3300048913 Bacteria 25359
176 Ga0496110_0009225 3300048913 Bacteria 7973
177 Ga0496110_0012430 3300048913 Bacteria 7001
178 Ga0496111_0022674 3300048914 Bacteria 4398
179 Ga0496112_0011373 3300048915 Bacteria 8124
180 Ga0496114_0000690 3300048917 Bacteria 25130
181 Ga0496114_0002459 3300048917 Bacteria 14136
182 Ga0496114_0018264 3300048917 Bacteria 5668
183 Ga0496115_0000573 3300048918 Bacteria 28473
184 Ga0501037_0019311 3300049573 Bacteria 5026
185 Ga0501041_0006688 3300049577 Bacteria 6754
186 Ga0501042_0000277 3300049578 Bacteria 25113
187 Ga0501046_0036584 3300049580 Bacteria 3950
188 Ga0501070_0036666 3300049586 Bacteria 4095
189 Ga0501079_0009688 3300049741 Bacteria 7303
190 Ga0501045_0001211 3300049824 Bacteria 17175
191 nmdc:mga05p37_38865_c1 3300050507 Bacteria 5838
192 nmdc:mga05p37_50538_c1 3300050507 Bacteria 5113
193 nmdc:mga09592_21717_c1 3300050508 Bacteria 5292
194 nmdc:mga08y16_43304_c1 3300050511 Bacteria 4718
195 nmdc:mga0n895_18474_c1 3300050512 Bacteria 6453
196 nmdc:mga0n895_31033_c1 3300050512 Bacteria 5113
197 nmdc:mga0rr50_413_c1 3300050513 Bacteria 23133
198 nmdc:mga08x19_17502_c1 3300050514 Bacteria 4386
199 nmdc:mga08x19_4211_c1 3300050514 Bacteria 8527
200 nmdc:mga0a205_2570_c1 3300050515 Bacteria 16006
201 Ga0501084_0012222 3300054114 Bacteria 7106
202 Ga0501082_0001093 3300060353 Bacteria 24014
203 Ga0501082_0055516 3300060353 Bacteria 3412
204 Ga0466967_0000108
205 Ga0070658_10053268
206 Ga0070683_100005463
207 Ga0070683_100041959
208 Ga0070680_100042694
209 Ga0070682_100007934
210 Ga0068868_100018001
211 Ga0070661_100037166
212 Ga0070668_100013713
213 Ga0070671_100033008
214 Ga0070688_100003350
215 Ga0070703_10000002
216 Ga0070714_100009128
217 Ga0070714_100014206
218 Ga0070701_10002318
219 Ga0070711_100004585
220 Ga0070700_100000684
221 Ga0070708_100006609
222 Ga0070708_100023235
223 Ga0070678_100003222
224 Ga0070678_100011232
225 Ga0070662_100025079
226 Ga0070681_10005979
227 Ga0068867_100000986
228 Ga0070706_100000593
229 Ga0070706_100012288
230 Ga0070707_100003135
231 Ga0070707_100072611
232 Ga0070698_100004036
233 Ga0070699_100018597
234 Ga0070679_100030308
235 Ga0070679_100049783
236 Ga0070684_100017138
237 Ga0068853_100034461
238 Ga0070672_100021126
239 Ga0070686_100000523
240 Ga0070696_100001749
241 Ga0070693_100025267
242 Ga0070704_100012443
243 Ga0068856_100017429
244 Ga0068856_100028575
245 Ga0070702_100022793
246 Ga0068851_10013642
247 Ga0068870_10009099
248 Ga0068863_100068104
249 Ga0081455_10037225
250 Ga0081540_1000879
251 Ga0081540_1002725
252 Ga0070717_10000842
253 Ga0070712_100018552
254 Ga0097621_100018941
255 Ga0075428_100038428
256 Ga0075431_100024389
257 Ga0075433_10001444
258 Ga0075433_10008694
259 Ga0075433_10038174
260 Ga0075434_100005673
261 Ga0075434_100010286
262 Ga0068865_100000286
263 Ga0075436_100009231
264 Ga0075436_100010324
265 Ga0075436_100017623
266 Ga0075435_100000090
267 Ga0075435_100013911
268 Ga0111539_10059754
269 Ga0111539_10088528
270 Ga0111539_10095874
271 Ga0105245_10002363
272 Ga0105245_10012042
273 Ga0114129_10023828
274 Ga0114129_10043799
275 Ga0114129_10064668
276 Ga0114129_10079738
277 Ga0105243_10003355
278 Ga0105241_10014051
279 Ga0105242_10005827
280 Ga0105249_10004882
281 Ga0105239_10004320
282 Ga0105239_10076578
283 Ga0157371_10022331
284 Ga0157369_10019168
285 Ga0157374_10006706
286 Ga0157378_10004820
287 Ga0163162_10010276
288 Ga0157375_10010067
289 Ga0157380_10039843
290 Ga0206353_10314511
291 Ga0207653_10002148
292 Ga0207643_10000027
293 Ga0207643_10009918
294 Ga0207705_10030855
295 Ga0207684_10000078
296 Ga0207684_10019221
297 Ga0207693_10001432
298 Ga0207693_10037975
299 Ga0207646_10004246
300 Ga0207646_10007051
301 Ga0207646_10044015
302 Ga0207687_10020012
303 Ga0207664_10000776
304 Ga0207706_10017269
305 Ga0207706_10037817
306 Ga0207709_10001144
307 Ga0207691_10045781
308 Ga0207679_10005858
309 Ga0207712_10007418
310 Ga0207678_10030015
311 Ga0207708_10000370
312 Ga0207708_10048500
313 Ga0207702_10001273
314 Ga0207702_10024796
315 Ga0207702_10040004
316 Ga0207702_10047002
317 Ga0207648_10002247
318 Ga0207683_10001015
319 Ga0207683_10004028
320 Ga0207428_10014555
321 Ga0307410_10002019
322 Ga0307406_10001309
323 Ga0307407_10000497
324 Ga0307409_100000817
325 Ga0307416_100000719
326 Ga0307414_10032827
327 Ga0307415_100000804
328 Ga0373943_0005845
329 Ga0373947_0003213
330 Ga0395899_0012876
331 Ga0395899_0051934
332 Ga0395900_0003014
333 Ga0395900_0013135
334 Ga0395900_0031507
335 Ga0395900_0062274
336 Ga0395898_0002595
337 Ga0395898_0006006
338 Ga0395898_0015776
339 Ga0395898_0020726
340 Ga0395898_0028131
341 Ga0395898_0029728
342 Ga0395898_0043164
343 Ga0395898_0046097
344 Ga0395905_0005421
345 Ga0395905_0006841
346 Ga0395905_0019881
347 Ga0395905_0034723
348 Ga0395905_0034904
349 Ga0395905_0037392
350 Ga0395901_0002200
351 Ga0395901_0005297
352 Ga0395901_0011857
353 Ga0395901_0021995
354 Ga0395901_0043396
355 Ga0395901_0060996
356 Ga0395901_0067666
357 Ga0451853_0626475
358 Ga0439446_0001624
359 Ga0496100_0020706
360 Ga0496101_0002439
361 Ga0496101_0008696
362 Ga0496101_0069029
363 Ga0496102_0008123
364 Ga0496103_0020965
365 Ga0496104_0001048
366 Ga0496104_0012997
367 Ga0496104_0048229
368 Ga0496105_0000594
369 Ga0496105_0040316
370 Ga0496106_0020039
371 Ga0496106_0047265
372 Ga0496107_0000673
373 Ga0496108_0028311
374 Ga0496108_0072082
375 Ga0496109_0000463
376 Ga0496109_0013482
377 Ga0496109_0035244
378 Ga0496110_0000563
379 Ga0496110_0009225
380 Ga0496110_0012430
381 Ga0496111_0022674
382 Ga0496112_0011373
383 Ga0496114_0000690
384 Ga0496114_0002459
385 Ga0496114_0018264
386 Ga0496115_0000573
387 Ga0501037_0019311
388 Ga0501041_0006688
389 Ga0501042_0000277
390 Ga0501046_0036584
391 Ga0501070_0036666
392 Ga0501079_0009688
393 Ga0501045_0001211
394 nmdc:mga05p37_38865_c1
395 nmdc:mga05p37_50538_c1
396 nmdc:mga09592_21717_c1
397 nmdc:mga08y16_43304_c1
398 nmdc:mga0n895_18474_c1
399 nmdc:mga0n895_31033_c1
400 nmdc:mga0rr50_413_c1
401 nmdc:mga08x19_17502_c1
402 nmdc:mga08x19_4211_c1
403 nmdc:mga0a205_2570_c1
404 Ga0501084_0012222
405 Ga0501082_0001093
406 Ga0501082_0055516

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00196

GerE

Bacterial regulatory proteins, luxR family

875

930

0.97

PF13424

TPR_12

Tetratricopeptide repeat

663

735

0.92

PF13191

AAA_16

AAA ATPase domain

64

227

0.82

PF13401

AAA_22

AAA domain

83

236

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
4wsz-assembly1.cif.gz_B crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9753 779 831
4wul-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 26bp dna 0.9742 779 831
7ve5-assembly1.cif.gz_B c-terminal domain of vrar 0.972 779 831
4wul-assembly1.cif.gz_B crystal structure of e. faecalis dna binding domain liard191n complexed with 26bp dna 0.9694 779 831
3qp6-assembly1.cif.gz_A-2 crystal structure of cvir (chromobacterium violaceum 12472) bound to c6-hsl 0.9484 779 831
ID Description Score Start End Superfamily
af_O53213_1064_1134_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9903 779 831 1.10.10.10
3qp6A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9484 779 831 1.10.10.10
af_P06993_830_894_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9425 775 831 1.10.10.10
1rnlA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9155 779 833 1.10.10.10
af_P52106_149_214_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9148 774 831 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A7Y5XVP2-F1-model_v4 ATP-binding protein 0.9595 5 173 GO:0004016
GO:0005524
GO:0005737
AF-A0A1Q7BI86-F1-model_v4 Orc1-like AAA ATPase domain-containing protein 0.9166 5 208 GO:0000166
GO:0004016
GO:0005737
AF-A0A4Q5MVS8-F1-model_v4 Helix-turn-helix transcriptional regulator 0.883 5 391 GO:0000166
GO:0004016
GO:0005737
AF-A0A7Y5XVP2-F1-model_v4 ATP-binding protein 0.8826 5 173 GO:0004016
GO:0005524
GO:0005737
AF-A0A5B0BN48-F1-model_v4 ATP-binding protein 0.8738 5 231 GO:0004016
GO:0005524
GO:0005737
GO:0016887

Map