F311516

General Info

Members Datasets Scaffolds Average Seq Length
203 150 406 254

Family's Representative Sequence

Representative Sequence 3300041511|Ga0451855_0584181|Ga0451855_0584181_220_993
Length 257
Sequence MDLHFNQSLASGYHSGSQISRVLTEDWMESNMFCPVCGAPVLGHYEANKPVADFFCDDCKSDFELKSKESKTAVIGHKIADGAYGTMIERITSLRNPHLFVMTYTNWTVNNLLIIPKFFFVPDIIEKRKPLADTARRAGWTGCNIEIGSIPDSGKIFIIKNSQQEDKSRVVDQYQRTLSLQTSKSESRGWLMDVLKCVERIPQDDFCLDEVYAFVEELQLKHPDNNHVHDKIRQQLQFLRDKGFIQFFGGGRYRRIR

Samples

Sample ID Description Type Environment
1 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
15 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
23 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
24 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
25 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
26 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
27 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
28 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
29 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
30 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
31 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
32 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
36 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
37 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
40 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
43 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
44 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
68 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
69 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
70 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
71 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
72 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
73 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
74 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
75 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
76 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
77 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
78 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
79 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
80 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
81 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
82 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
83 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
84 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
85 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
86 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
87 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
88 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
89 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
90 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
91 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
92 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
93 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
94 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
95 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
96 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
97 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
98 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
99 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
100 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
101 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
102 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
103 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
104 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
105 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
106 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
107 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
108 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
109 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
110 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
111 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
112 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
113 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
114 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
115 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
116 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
117 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
118 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
119 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
120 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
121 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
122 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
123 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
124 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
125 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
126 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
127 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
128 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
130 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
132 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
133 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
134 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
135 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
136 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
137 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
138 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
139 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
140 3300053736 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 endosphere Metagenome Endosphere
141 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
142 2513237101 Bradyrhizobium murdochi WSM1741 Isolate Nodule
143 2744054633 Bradyrhizobium neotropicale BR 10247 Isolate Unclassified
144 2874604998 Bradyrhizobium sp. LMTR 3 Isolate Nodule
145 2903748898 Bradyrhizobium uaiense UFLA 03-164 Isolate Nodule
146 2904690495 Bradyrhizobium ivorense CI-1B Isolate Nodule
147 2906602504 Bradyrhizobium guangzhouense CCBAU 53426 Isolate Unclassified
148 2922425934
149 8006933436 Bradyrhizobium septentrionale 7(2017) Isolate Unclassified
150 8006973647 Bradyrhizobium septentrionale 162S2 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 96.04
Metatranscriptomes 0
Isolates 3.96

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.43
Nodule 2.46
Rhizoplane 1.48
Rhizosphere 82.27
Stem 0
Stem Tuber 0
Unclassified 3.45

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451855_0584181 3300041511 Bacteria 1176
2 rootH2_10041443 3300003320 Bacteria 1332
3 rootH1_10141151 3300003323 Bacteria 1926
4 JGI25404J52841_10015903 3300003659 Bacteria 1632
5 Ga0070683_100065854 3300005329 Bacteria 3374
6 Ga0070668_100280055 3300005347 Bacteria 1392
7 Ga0070713_100004828 3300005436 Bacteria 9130
8 Ga0070681_10071639 3300005458 Bacteria 3430
9 Ga0070681_10467184 3300005458 Bacteria 1174
10 Ga0070706_100049919 3300005467 Bacteria 3860
11 Ga0070706_100263372 3300005467 Bacteria 1609
12 Ga0070698_100029412 3300005471 Bacteria 5704
13 Ga0070698_100153583 3300005471 Unclassified 2248
14 Ga0070698_100343417 3300005471 Bacteria 1424
15 Ga0070699_100045591 3300005518 Bacteria 3794
16 Ga0070679_100281685 3300005530 Bacteria 1615
17 Ga0070684_100040991 3300005535 Bacteria 3989
18 Ga0070684_100045360 3300005535 Bacteria 3807
19 Ga0068853_100028684 3300005539 Bacteria 4683
20 Ga0070693_100074208 3300005547 Bacteria 2011
21 Ga0070665_100372898 3300005548 Bacteria 1434
22 Ga0068855_100071117 3300005563 Bacteria 4046
23 Ga0068855_100599415 3300005563 Bacteria 1188
24 Ga0068857_100052824 3300005577 Bacteria 3604
25 Ga0068854_100009075 3300005578 Bacteria 6409
26 Ga0068856_100075737 3300005614 Bacteria 3333
27 Ga0068856_100136223 3300005614 Bacteria 2461
28 Ga0068856_100175570 3300005614 Bacteria 2154
29 Ga0068852_100106172 3300005616 Bacteria 2545
30 Ga0068852_100319023 3300005616 Bacteria 1508
31 Ga0068860_100326758 3300005843 Bacteria 1506
32 Ga0068862_100081100 3300005844 Bacteria 2814
33 Ga0068862_100312069 3300005844 Bacteria 1449
34 Ga0081455_10077477 3300005937 Bacteria 2735
35 Ga0081455_10362525 3300005937 Bacteria 1018
36 Ga0081540_1003467 3300005983 Bacteria 12452
37 Ga0081540_1025924 3300005983 Bacteria 3360
38 Ga0081540_1044527 3300005983 Bacteria 2264
39 Ga0081539_10029401 3300005985 Unclassified 3433
40 Ga0075365_10076047 3300006038 Bacteria 2267
41 Ga0070712_100388642 3300006175 Bacteria 1150
42 Ga0075369_10017635 3300006186 Bacteria 2897
43 Ga0075366_10102418 3300006195 Bacteria 1719
44 Ga0075428_100079888 3300006844 Bacteria 3569
45 Ga0075428_100313673 3300006844 Bacteria 1685
46 Ga0075429_100223432 3300006880 Bacteria 1649
47 Ga0105240_10061189 3300009093 Bacteria 4692
48 Ga0105240_10217635 3300009093 Bacteria 2227
49 Ga0105240_10411024 3300009093 Bacteria 1522
50 Ga0114129_10092316 3300009147 Bacteria 4194
51 Ga0114129_10312609 3300009147 Bacteria 2091
52 Ga0105237_10407851 3300009545 Bacteria 1364
53 Ga0105237_10450167 3300009545 Bacteria 1293
54 Ga0105238_10129123 3300009551 Bacteria 2506
55 Ga0105238_10300154 3300009551 Bacteria 1590
56 Ga0105249_10214420 3300009553 Bacteria 1891
57 Ga0105249_10918386 3300009553 Bacteria 943
58 Ga0105239_10051976 3300010375 Bacteria 4492
59 Ga0105239_10641865 3300010375 Bacteria 1212
60 Ga0105239_10669148 3300010375 Bacteria 1186
61 Ga0157369_10148383 3300013105 Bacteria 2479
62 Ga0163162_10270481 3300013306 Bacteria 1831
63 Ga0157372_10205572 3300013307 Bacteria 2282
64 Ga0209233_1011782 3300025261 Bacteria 2566
65 Ga0209758_1000088 3300025297 Bacteria 251547
66 Ga0209758_1029231 3300025297 Bacteria 2309
67 Ga0207647_10001818 3300025904 Bacteria 16371
68 Ga0207699_10016659 3300025906 Bacteria 3850
69 Ga0207699_10242548 3300025906 Bacteria 1239
70 Ga0207684_10685782 3300025910 Bacteria 871
71 Ga0207707_10051716 3300025912 Bacteria 3578
72 Ga0207707_10131761 3300025912 Bacteria 2186
73 Ga0207707_10682078 3300025912 Bacteria 864
74 Ga0207695_10216755 3300025913 Bacteria 1822
75 Ga0207695_10322959 3300025913 Bacteria 1433
76 Ga0207693_10208580 3300025915 Bacteria 1536
77 Ga0207663_10057529 3300025916 Bacteria 2450
78 Ga0207663_10301223 3300025916 Bacteria 1198
79 Ga0207652_10186597 3300025921 Bacteria 1865
80 Ga0207694_10106683 3300025924 Bacteria 2225
81 Ga0207694_10148770 3300025924 Bacteria 1886
82 Ga0207700_10423444 3300025928 Bacteria 1170
83 Ga0207706_10343422 3300025933 Bacteria 1298
84 Ga0207665_10271865 3300025939 Bacteria 1259
85 Ga0207661_10022493 3300025944 Bacteria 4750
86 Ga0207661_10022863 3300025944 Bacteria 4715
87 Ga0207667_10040739 3300025949 Bacteria 4945
88 Ga0207667_10363802 3300025949 Bacteria 1475
89 Ga0207712_10238603 3300025961 Bacteria 1463
90 Ga0207668_10166110 3300025972 Bacteria 1725
91 Ga0207640_10063353 3300025981 Bacteria 2457
92 Ga0207640_10084204 3300025981 Bacteria 2183
93 Ga0207639_10072065 3300026041 Bacteria 2704
94 Ga0207702_10075556 3300026078 Bacteria 2911
95 Ga0207702_10393829 3300026078 Unclassified 1334
96 Ga0207674_10052334 3300026116 Bacteria 4165
97 Ga0207698_10349658 3300026142 Bacteria 1396
98 Ga0268266_10279426 3300028379 Bacteria 1552
99 Ga0268265_10123427 3300028380 Bacteria 2138
100 Ga0268265_10243632 3300028380 Bacteria 1588
101 Ga0265322_10065999 3300028654 Bacteria 1026
102 Ga0307517_10000859 3300028786 Bacteria 51881
103 Ga0265339_10004656 3300031249 Bacteria 9321
104 Ga0265316_10080676 3300031344 Bacteria 2495
105 Ga0307513_10188656 3300031456 Bacteria 1916
106 Ga0307516_10290125 3300031730 Bacteria 1315
107 Ga0373923_0043716 3300035111 Bacteria 1855
108 Ga0373954_0072471 3300035118 Bacteria 1638
109 Ga0373946_0040477 3300035171 Bacteria 1907
110 Ga0373924_0100026 3300035410 Bacteria 1247
111 Ga0373927_0037707 3300035695 Bacteria 3140
112 Ga0373927_0070801 3300035695 Bacteria 2257
113 Ga0373927_0141321 3300035695 Bacteria 1575
114 Ga0373933_0060911 3300035724 Bacteria 2276
115 Ga0373947_0032216 3300035725 Bacteria 3088
116 Ga0373937_0122091 3300036401 Bacteria 2428
117 Ga0373937_0165846 3300036401 Bacteria 2071
118 Ga0373925_0187931 3300037068 Bacteria 1638
119 Ga0395900_0015831 3300037418 Bacteria 7686
120 Ga0395898_0013045 3300037466 Bacteria 8562
121 Ga0395898_0298119 3300037466 Bacteria 1538
122 Ga0436365_0070940 3300039437 Bacteria 2502
123 Ga0436365_0081922 3300039437 Bacteria 2282
124 Ga0436365_1210048 3300039437 Bacteria 1349
125 Ga0451577_0012129 3300042876 Bacteria 8106
126 Ga0451577_0111602 3300042876 Bacteria 2446
127 Ga0466969_0165051 3300044656 Bacteria 1017
128 Ga0453684_0005267 3300044712 Bacteria 25858
129 Ga0453684_0043331 3300044712 Bacteria 6050
130 Ga0453684_0046095 3300044712 Bacteria 5804
131 Ga0453684_0049978 3300044712 Bacteria 5505
132 Ga0453684_0066916 3300044712 Bacteria 4572
133 Ga0453684_0359464 3300044712 Bacteria 1640
134 Ga0453684_0934984 3300044712 Bacteria 926
135 Ga0451576_0093342 3300045051 Bacteria 3129
136 Ga0451576_0634560 3300045051 Bacteria 1122
137 Ga0466967_0539022 3300045976 Bacteria 1148
138 Ga0495603_0053180 3300046455 Bacteria 2403
139 Ga0495651_0011561 3300046462 Bacteria 6780
140 Ga0495653_0134139 3300046463 Bacteria 1748
141 Ga0495580_0072439 3300046472 Bacteria 2406
142 Ga0495582_0171734 3300046473 Bacteria 1234
143 Ga0495594_0052670 3300046499 Bacteria 2241
144 Ga0495594_0283511 3300046499 Bacteria 944
145 Ga0495606_0001650 3300046507 Bacteria 29051
146 Ga0495608_0058896 3300046511 Bacteria 2531
147 Ga0495652_0190135 3300046529 Bacteria 1567
148 Ga0495640_0164479 3300046533 Bacteria 1420
149 Ga0495587_0062782 3300046536 Bacteria 2175
150 Ga0495622_0025723 3300046557 Bacteria 2749
151 Ga0495667_0053229 3300046559 Bacteria 2666
152 Ga0495634_0070452 3300046642 Bacteria 2305
153 Ga0495635_0119861 3300046663 Bacteria 1795
154 Ga0495588_0020183 3300046674 Bacteria 3272
155 Ga0495657_0119498 3300046675 Bacteria 1661
156 Ga0495599_0153268 3300046678 Bacteria 1426
157 Ga0495623_0005050 3300046679 Bacteria 8659
158 Ga0495647_0062551 3300046681 Bacteria 1472
159 Ga0495624_0090160 3300046690 Bacteria 1892
160 Ga0495600_0134431 3300046809 Bacteria 1606
161 Ga0495604_0054342 3300047317 Bacteria 3090
162 Ga0495674_0053483 3300047319 Bacteria 3549
163 Ga0495676_0203304 3300047321 Bacteria 1375
164 Ga0495680_0158600 3300047322 Bacteria 1644
165 Ga0495675_0052606 3300047444 Bacteria 2585
166 Ga0495684_0301688 3300047471 Bacteria 1150
167 Ga0495593_0057819 3300047673 Bacteria 2035
168 Ga0495602_0120084 3300048088 Bacteria 2116
169 Ga0496102_0237362 3300048905 Bacteria 1719
170 Ga0496106_0201308 3300048909 Bacteria 1585
171 Ga0496112_0000023 3300048915 Bacteria 156144
172 Ga0496121_0016155 3300048924 Bacteria 7731
173 Ga0496121_0052838 3300048924 Bacteria 3408
174 Ga0496125_0000158 3300048928 Bacteria 151273
175 Ga0496126_0006232 3300048929 Bacteria 13329
176 Ga0496126_0093811 3300048929 Bacteria 2635
177 Ga0496126_0101036 3300048929 Bacteria 2523
178 Ga0501031_0200350 3300049568 Bacteria 1303
179 Ga0501033_0051858 3300049570 Bacteria 3041
180 Ga0501034_0199342 3300049571 Bacteria 1960
181 Ga0501036_0455855 3300049572 Bacteria 1065
182 Ga0501038_0296108 3300049574 Bacteria 1270
183 Ga0501039_0187759 3300049575 Bacteria 1625
184 Ga0501043_0232836 3300049579 Unclassified 1422
185 Ga0501047_0324691 3300049581 Unclassified 1378
186 Ga0501035_0169372 3300049822 Bacteria 1887
187 Ga0501044_0339890 3300049823 Unclassified 1422
188 nmdc:mga0yw44_379237_c1 3300050492 Bacteria 955
189 nmdc:mga05p37_153300_c1 3300050507 Unclassified 2817
190 nmdc:mga05p37_243489_c1 3300050507 Bacteria 2161
191 Ga0495619_0121376 3300053085 Bacteria 1792
192 Ga0500645_014336 3300053730 Bacteria 2527
193 Ga0500599_001148 3300053736 Bacteria 3000
194 Ga0466962_0122337 3300061719 Bacteria 1256
195 2513697925 2513237101 Bacteria 7952346
196 2745078510 2744054633 Bacteria 8678936
197 2874606542 2874604998 Bacteria 7834745
198 2903753548 2903748898 Bacteria 9972761
199 2904699144 2904690495 Bacteria 9412302
200 2906607733 2906602504 Bacteria 8295279
201 2922432471
202 8006934920 8006933436 Bacteria 10410654
203 8006974888 8006973647 Bacteria 10679141
204 Ga0451855_0584181
205 rootH2_10041443
206 rootH1_10141151
207 JGI25404J52841_10015903
208 Ga0070683_100065854
209 Ga0070668_100280055
210 Ga0070713_100004828
211 Ga0070681_10071639
212 Ga0070681_10467184
213 Ga0070706_100049919
214 Ga0070706_100263372
215 Ga0070698_100029412
216 Ga0070698_100153583
217 Ga0070698_100343417
218 Ga0070699_100045591
219 Ga0070679_100281685
220 Ga0070684_100040991
221 Ga0070684_100045360
222 Ga0068853_100028684
223 Ga0070693_100074208
224 Ga0070665_100372898
225 Ga0068855_100071117
226 Ga0068855_100599415
227 Ga0068857_100052824
228 Ga0068854_100009075
229 Ga0068856_100075737
230 Ga0068856_100136223
231 Ga0068856_100175570
232 Ga0068852_100106172
233 Ga0068852_100319023
234 Ga0068860_100326758
235 Ga0068862_100081100
236 Ga0068862_100312069
237 Ga0081455_10077477
238 Ga0081455_10362525
239 Ga0081540_1003467
240 Ga0081540_1025924
241 Ga0081540_1044527
242 Ga0081539_10029401
243 Ga0075365_10076047
244 Ga0070712_100388642
245 Ga0075369_10017635
246 Ga0075366_10102418
247 Ga0075428_100079888
248 Ga0075428_100313673
249 Ga0075429_100223432
250 Ga0105240_10061189
251 Ga0105240_10217635
252 Ga0105240_10411024
253 Ga0114129_10092316
254 Ga0114129_10312609
255 Ga0105237_10407851
256 Ga0105237_10450167
257 Ga0105238_10129123
258 Ga0105238_10300154
259 Ga0105249_10214420
260 Ga0105249_10918386
261 Ga0105239_10051976
262 Ga0105239_10641865
263 Ga0105239_10669148
264 Ga0157369_10148383
265 Ga0163162_10270481
266 Ga0157372_10205572
267 Ga0209233_1011782
268 Ga0209758_1000088
269 Ga0209758_1029231
270 Ga0207647_10001818
271 Ga0207699_10016659
272 Ga0207699_10242548
273 Ga0207684_10685782
274 Ga0207707_10051716
275 Ga0207707_10131761
276 Ga0207707_10682078
277 Ga0207695_10216755
278 Ga0207695_10322959
279 Ga0207693_10208580
280 Ga0207663_10057529
281 Ga0207663_10301223
282 Ga0207652_10186597
283 Ga0207694_10106683
284 Ga0207694_10148770
285 Ga0207700_10423444
286 Ga0207706_10343422
287 Ga0207665_10271865
288 Ga0207661_10022493
289 Ga0207661_10022863
290 Ga0207667_10040739
291 Ga0207667_10363802
292 Ga0207712_10238603
293 Ga0207668_10166110
294 Ga0207640_10063353
295 Ga0207640_10084204
296 Ga0207639_10072065
297 Ga0207702_10075556
298 Ga0207702_10393829
299 Ga0207674_10052334
300 Ga0207698_10349658
301 Ga0268266_10279426
302 Ga0268265_10123427
303 Ga0268265_10243632
304 Ga0265322_10065999
305 Ga0307517_10000859
306 Ga0265339_10004656
307 Ga0265316_10080676
308 Ga0307513_10188656
309 Ga0307516_10290125
310 Ga0373923_0043716
311 Ga0373954_0072471
312 Ga0373946_0040477
313 Ga0373924_0100026
314 Ga0373927_0037707
315 Ga0373927_0070801
316 Ga0373927_0141321
317 Ga0373933_0060911
318 Ga0373947_0032216
319 Ga0373937_0122091
320 Ga0373937_0165846
321 Ga0373925_0187931
322 Ga0395900_0015831
323 Ga0395898_0013045
324 Ga0395898_0298119
325 Ga0436365_0070940
326 Ga0436365_0081922
327 Ga0436365_1210048
328 Ga0451577_0012129
329 Ga0451577_0111602
330 Ga0466969_0165051
331 Ga0453684_0005267
332 Ga0453684_0043331
333 Ga0453684_0046095
334 Ga0453684_0049978
335 Ga0453684_0066916
336 Ga0453684_0359464
337 Ga0453684_0934984
338 Ga0451576_0093342
339 Ga0451576_0634560
340 Ga0466967_0539022
341 Ga0495603_0053180
342 Ga0495651_0011561
343 Ga0495653_0134139
344 Ga0495580_0072439
345 Ga0495582_0171734
346 Ga0495594_0052670
347 Ga0495594_0283511
348 Ga0495606_0001650
349 Ga0495608_0058896
350 Ga0495652_0190135
351 Ga0495640_0164479
352 Ga0495587_0062782
353 Ga0495622_0025723
354 Ga0495667_0053229
355 Ga0495634_0070452
356 Ga0495635_0119861
357 Ga0495588_0020183
358 Ga0495657_0119498
359 Ga0495599_0153268
360 Ga0495623_0005050
361 Ga0495647_0062551
362 Ga0495624_0090160
363 Ga0495600_0134431
364 Ga0495604_0054342
365 Ga0495674_0053483
366 Ga0495676_0203304
367 Ga0495680_0158600
368 Ga0495675_0052606
369 Ga0495684_0301688
370 Ga0495593_0057819
371 Ga0495602_0120084
372 Ga0496102_0237362
373 Ga0496106_0201308
374 Ga0496112_0000023
375 Ga0496121_0016155
376 Ga0496121_0052838
377 Ga0496125_0000158
378 Ga0496126_0006232
379 Ga0496126_0093811
380 Ga0496126_0101036
381 Ga0501031_0200350
382 Ga0501033_0051858
383 Ga0501034_0199342
384 Ga0501036_0455855
385 Ga0501038_0296108
386 Ga0501039_0187759
387 Ga0501043_0232836
388 Ga0501047_0324691
389 Ga0501035_0169372
390 Ga0501044_0339890
391 nmdc:mga0yw44_379237_c1
392 nmdc:mga05p37_153300_c1
393 nmdc:mga05p37_243489_c1
394 Ga0495619_0121376
395 Ga0500645_014336
396 Ga0500599_001148
397 Ga0466962_0122337
398 2513697925
399 2745078510
400 2874606542
401 2903753548
402 2904699144
403 2906607733
404 2922432471
405 8006934920
406 8006974888

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06044

DpnI

Dam-replacing family

1

183

0.98

PF17726

DpnI_C

Dam-replacing HTH domain

186

255

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
4esj-assembly2.cif.gz_B restriction endonuclease dpni in complex with target dna 0.9613 23 245
4esj-assembly1.cif.gz_A restriction endonuclease dpni in complex with target dna 0.956 23 245
4esj-assembly2.cif.gz_B restriction endonuclease dpni in complex with target dna 0.8332 23 245
4o5v-assembly1.cif.gz_A crystal structure of t. acidophilum ider 0.7736 194 245
1uhm-assembly1.cif.gz_A solution structure of the globular domain of linker histone homolog hho1p from s. cerevisiae 0.7648 179 244
ID Description Score Start End Superfamily
4esjB01 Alpha Beta;3-Layer(aba) Sandwich;PvuII Endonuclease; Chain A;Dam replacing family, catalytic PD-(D/E)XK domain 0.9461 23 155 3.40.210.30
af_Q59048_168_225_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8366 194 245 1.10.10.10
4kywA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8204 157 245 1.10.10.10
af_Q4CRF9_288_429_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8065 192 245 1.10.10.10
4kywA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8036 157 245 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A2S9IXG9-F1-model_v4 Dam-replacing domain protein 1.001 179 245
AF-A0A522CCN8-F1-model_v4 Dam-replacing domain protein 0.9957 175 244
AF-A0A2V9BQX0-F1-model_v4 Dam-replacing domain protein 0.9947 174 245
AF-A0A1L7LL82-F1-model_v4 Type II site-specific deoxyribonuclease 0.9938 175 246
AF-A0A0G0MQ97-F1-model_v4 Dam-replacing family protein 0.9919 179 246 GO:0016020

Map