F310786

General Info

Members Datasets Scaffolds Average Seq Length
203 138 406 592

Family's Representative Sequence

Representative Sequence 3300005330|Ga0070690_100002331|Ga0070690_1000023313
Length 610
Sequence MKILRILLPALGAGALLAACVTKPPVSSKRMSPDAMLNTLVEEWFDRQLELYPMDATAIGDSRFDDRLGDSTSPGFRERALGIERAFLDRARRIDTAHLSAESRITWEIFVSEREHVLAGQPFHEEYMPFTQMGGLPLDLALYGSGDGPQPFTAPVEYDRFLKRVREFPRWADGAIAMLRTGMSRGITLPRPAVAKMIPQLRDIVTATPEASIFWGPIKGLPEGFSAADRERLTAAYRAAIAQEVLPAYTRLADFLERDYLPASRTSVGWKDLPDGTAWYRWRIRGATTMDRSPDEIHELGLAEVARIRAEMTAVKAQVGFQGDLAAFFKFLQDDPQFYFGSEQELLDAYRDVKRRVDALLPRLFSVFPRADYEIRPVEEFRAASAAGGSYQAPSADGKRPGIFYINTHNLRAQPRFGLETLSLHEAAPGHHFQISIQQELTGMPRFRRFNGYVSYSEGWALYSESIGKELGMFTDPYQWYGRLSDEMLRAMRLVVDTGLHARGWSREQAIRYMLDNSSMAESDVTAEVERYIVWPGQALGYKLGQLHITALRARAQKELGDKFDVREFHREVLRDGAVPMDVLTAKIDRWIEGKGAAPVSQQKGSAHQD

Samples

Sample ID Description Type Environment
1 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
5 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
15 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
16 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
17 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
18 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
19 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
20 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
21 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
24 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
27 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
30 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
31 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
32 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
33 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
36 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
37 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
38 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
39 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
40 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
41 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
45 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
46 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
47 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
48 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
49 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
52 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
53 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
54 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
80 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
83 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
84 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
85 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
86 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
87 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
88 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
89 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
90 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
91 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
92 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
93 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
94 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
95 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
96 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
97 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
98 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
99 3300041458 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG Metagenome Rhizoplane
100 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
101 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
102 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
103 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
104 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
105 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
106 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
107 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
108 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
109 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
110 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
112 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
113 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
114 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
115 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
116 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
117 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
118 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
119 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
120 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
121 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
122 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
123 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
124 3300049759 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_A_4_drought Metagenome Rhizosphere
125 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
126 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
127 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
128 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
129 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
130 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
131 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
132 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
133 2643221544 Pelomonas sp. Root1444 Isolate Unclassified
134 2643221585 Pelomonas sp. Root662 Isolate Unclassified
135 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
136 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
137 2643221656 Pelomonas sp. Root405 Isolate Unclassified
138 2738541337 Pelomonas sp. BT06 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.04
Metatranscriptomes 0
Isolates 2.96

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.46
Nodule 0
Rhizoplane 3.45
Rhizosphere 86.21
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070690_100002331 3300005330 Bacteria 10207
2 rootH1_10007413 3300003316 Bacteria 12935
3 rootL2_10007058 3300003322 Bacteria 11576
4 Ga0055531_10000044 3300003794 Bacteria 133446
5 Ga0065715_10092507 3300005293 Bacteria 5084
6 Ga0070670_100047646 3300005331 Bacteria 3688
7 Ga0070677_10005646 3300005333 Bacteria 4129
8 Ga0068869_100001448 3300005334 Bacteria 14029
9 Ga0070682_100004071 3300005337 Bacteria 8122
10 Ga0070682_100043723 3300005337 Bacteria 2771
11 Ga0070689_100002072 3300005340 Bacteria 13018
12 Ga0070668_100020283 3300005347 Bacteria 5015
13 Ga0070675_100003820 3300005354 Bacteria 11433
14 Ga0070675_100012204 3300005354 Bacteria 6735
15 Ga0070674_100003383 3300005356 Bacteria 8941
16 Ga0070674_100033697 3300005356 Bacteria 3412
17 Ga0070673_100000485 3300005364 Bacteria 21135
18 Ga0070673_100080129 3300005364 Bacteria 2645
19 Ga0070688_100082507 3300005365 Bacteria 2084
20 Ga0070667_100069171 3300005367 Bacteria 3004
21 Ga0070705_100004191 3300005440 Bacteria 7043
22 Ga0070694_100028288 3300005444 Bacteria 3646
23 Ga0070663_100044286 3300005455 Bacteria 3136
24 Ga0070678_100022933 3300005456 Bacteria 4149
25 Ga0070678_100077141 3300005456 Bacteria 2513
26 Ga0070662_100003047 3300005457 Bacteria 10414
27 Ga0070679_100176064 3300005530 Bacteria 2112
28 Ga0070672_100007781 3300005543 Bacteria 7309
29 Ga0070686_100006807 3300005544 Bacteria 6365
30 Ga0070686_100048648 3300005544 Bacteria 2687
31 Ga0070665_100011769 3300005548 Bacteria 8835
32 Ga0070704_100014581 3300005549 Bacteria 4911
33 Ga0070664_100000115 3300005564 Bacteria 53033
34 Ga0068856_100076763 3300005614 Bacteria 3310
35 Ga0068859_100000621 3300005617 Bacteria 35451
36 Ga0068859_100008769 3300005617 Bacteria 10212
37 Ga0068864_100002656 3300005618 Bacteria 14764
38 Ga0068861_100001183 3300005719 Bacteria 16243
39 Ga0068861_100002431 3300005719 Bacteria 12144
40 Ga0068861_100019400 3300005719 Bacteria 4857
41 Ga0068870_10001410 3300005840 Bacteria 9699
42 Ga0068863_100006259 3300005841 Bacteria 11692
43 Ga0068860_100033542 3300005843 Bacteria 4926
44 Ga0068862_100001008 3300005844 Bacteria 27023
45 Ga0068862_100003604 3300005844 Bacteria 13258
46 Ga0068862_100013305 3300005844 Bacteria 6806
47 Ga0081455_10032738 3300005937 Bacteria 4681
48 Ga0075428_100000200 3300006844 Bacteria 57112
49 Ga0075428_100000513 3300006844 Bacteria 39370
50 Ga0075430_100000531 3300006846 Bacteria 28688
51 Ga0075431_100002120 3300006847 Bacteria 18954
52 Ga0075431_100006023 3300006847 Bacteria 12019
53 Ga0075431_100017302 3300006847 Bacteria 7327
54 Ga0075431_100156969 3300006847 Bacteria 2341
55 Ga0075429_100000094 3300006880 Bacteria 48066
56 Ga0075429_100001206 3300006880 Bacteria 20964
57 Ga0097620_100000621 3300006931 Bacteria 35451
58 Ga0097620_100008769 3300006931 Bacteria 10212
59 Ga0111539_10002511 3300009094 Bacteria 24312
60 Ga0111539_10007495 3300009094 Bacteria 13969
61 Ga0111539_10015254 3300009094 Bacteria 9570
62 Ga0111539_10016361 3300009094 Bacteria 9197
63 Ga0111539_10071179 3300009094 Bacteria 4104
64 Ga0114129_10000367 3300009147 Bacteria 52338
65 Ga0114129_10019254 3300009147 Bacteria 9723
66 Ga0105242_10032702 3300009176 Bacteria 4160
67 Ga0105248_10068316 3300009177 Bacteria 3990
68 Ga0105248_10095734 3300009177 Bacteria 3342
69 Ga0105249_10012908 3300009553 Bacteria 7370
70 Ga0157374_10093598 3300013296 Bacteria 2869
71 Ga0163162_10020260 3300013306 Bacteria 6531
72 Ga0163162_10078897 3300013306 Bacteria 3358
73 Ga0157375_10016556 3300013308 Bacteria 6628
74 Ga0157375_10026090 3300013308 Bacteria 5440
75 Ga0163163_10000485 3300014325 Bacteria 35984
76 Ga0163163_10137957 3300014325 Bacteria 2480
77 Ga0157380_10000154 3300014326 Bacteria 39510
78 Ga0157380_10015793 3300014326 Bacteria 5554
79 Ga0157377_10006651 3300014745 Bacteria 5526
80 Ga0163161_10036829 3300017792 Bacteria 3505
81 Ga0209050_1002348 3300025298 Bacteria 16547
82 Ga0209051_1005212 3300025303 Bacteria 7679
83 Ga0209257_1000094 3300025304 Bacteria 262243
84 Ga0207697_10019505 3300025315 Bacteria 2778
85 Ga0207682_10002698 3300025893 Bacteria 7891
86 Ga0207682_10007639 3300025893 Bacteria 4303
87 Ga0207645_10008339 3300025907 Bacteria 7236
88 Ga0207645_10010432 3300025907 Bacteria 6376
89 Ga0207643_10001457 3300025908 Bacteria 13565
90 Ga0207643_10019791 3300025908 Bacteria 3689
91 Ga0207660_10027865 3300025917 Bacteria 3860
92 Ga0207649_10026353 3300025920 Bacteria 3400
93 Ga0207652_10132976 3300025921 Bacteria 2220
94 Ga0207659_10004126 3300025926 Bacteria 8769
95 Ga0207706_10049219 3300025933 Bacteria 3725
96 Ga0207670_10008949 3300025936 Bacteria 5682
97 Ga0207704_10033730 3300025938 Bacteria 2914
98 Ga0207691_10000807 3300025940 Bacteria 31168
99 Ga0207691_10014408 3300025940 Bacteria 7540
100 Ga0207691_10015330 3300025940 Bacteria 7291
101 Ga0207691_10019933 3300025940 Bacteria 6344
102 Ga0207689_10002352 3300025942 Bacteria 17675
103 Ga0207679_10001126 3300025945 Bacteria 17023
104 Ga0207679_10090311 3300025945 Bacteria 2368
105 Ga0207651_10056619 3300025960 Bacteria 2699
106 Ga0207651_10078902 3300025960 Bacteria 2363
107 Ga0207712_10081710 3300025961 Bacteria 2354
108 Ga0207708_10012566 3300026075 Bacteria 6313
109 Ga0207708_10014749 3300026075 Bacteria 5849
110 Ga0207708_10044178 3300026075 Bacteria 3395
111 Ga0207648_10020487 3300026089 Bacteria 5954
112 Ga0207648_10022525 3300026089 Bacteria 5654
113 Ga0207676_10010260 3300026095 Bacteria 6667
114 Ga0207676_10028703 3300026095 Bacteria 4158
115 Ga0207674_10114488 3300026116 Bacteria 2669
116 Ga0207675_100000136 3300026118 Bacteria 62435
117 Ga0207675_100004528 3300026118 Bacteria 13417
118 Ga0207675_100006579 3300026118 Bacteria 10996
119 Ga0207675_100019090 3300026118 Bacteria 6399
120 Ga0207675_100036324 3300026118 Bacteria 4597
121 Ga0207675_100044280 3300026118 Bacteria 4158
122 Ga0207683_10047830 3300026121 Bacteria 3745
123 Ga0207683_10084396 3300026121 Bacteria 2823
124 Ga0207428_10001638 3300027907 Bacteria 23290
125 Ga0207428_10069862 3300027907 Bacteria 2761
126 Ga0268265_10003824 3300028380 Bacteria 10665
127 Ga0268265_10009705 3300028380 Bacteria 6497
128 Ga0268264_10105426 3300028381 Bacteria 2459
129 Ga0307515_10025462 3300028794 Bacteria 10236
130 Ga0307515_10031536 3300028794 Bacteria 8831
131 Ga0265327_10002431 3300031251 Bacteria 19678
132 Ga0307513_10004863 3300031456 Bacteria 17834
133 Ga0307513_10031548 3300031456 Bacteria 5998
134 Ga0307513_10039673 3300031456 Bacteria 5217
135 Ga0307513_10060398 3300031456 Bacteria 4019
136 Ga0307513_10131551 3300031456 Bacteria 2447
137 Ga0307509_10082616 3300031507 Bacteria 3314
138 Ga0307408_100000008 3300031548 Bacteria 456355
139 Ga0316576_10053479 3300031727 Bacteria 2942
140 Ga0307413_10009837 3300031824 Bacteria 4600
141 Ga0307413_10036622 3300031824 Bacteria 2826
142 Ga0307406_10014640 3300031901 Bacteria 4516
143 Ga0307407_10009280 3300031903 Bacteria 4572
144 Ga0307407_10027072 3300031903 Bacteria 3045
145 Ga0307412_10062549 3300031911 Bacteria 2507
146 Ga0307411_10000177 3300032005 Bacteria 20429
147 Ga0307411_10001689 3300032005 Bacteria 9254
148 Ga0307411_10003541 3300032005 Bacteria 7271
149 Ga0307415_100037223 3300032126 Bacteria 3196
150 Ga0373939_0000079 3300035114 Bacteria 30696
151 Ga0316582_0018106 3300036647 Bacteria 4092
152 Ga0395905_0000719 3300037471 Bacteria 43703
153 Ga0451791_0606583 3300041451 Bacteria 7749
154 Ga0451793_1440737 3300041452 Bacteria 2351
155 Ga0451798_0174430 3300041458 Bacteria 2236
156 Ga0451807_0565934 3300041486 Bacteria 1923
157 Ga0451807_0568474 3300041486 Bacteria 3164
158 Ga0451807_0961330 3300041486 Bacteria 4458
159 Ga0450890_001247 3300042127 Bacteria 3684
160 Ga0450896_003797 3300042133 Bacteria 2026
161 Ga0451577_0039647 3300042876 Bacteria 4232
162 Ga0453684_0163145 3300044712 Bacteria 2633
163 Ga0451576_0088209 3300045051 Bacteria 3227
164 Ga0495638_0052818 3300046460 Bacteria 2530
165 Ga0495625_0019086 3300046660 Bacteria 5334
166 Ga0495672_0003771 3300047320 Bacteria 12770
167 Ga0496114_0052785 3300048917 Bacteria 3387
168 Ga0501042_0117597 3300049578 Bacteria 1914
169 Ga0501068_0001133 3300049584 Bacteria 14117
170 Ga0501070_0124713 3300049586 Bacteria 2128
171 Ga0501071_0015620 3300049587 Bacteria 5213
172 Ga0501072_0040733 3300049588 Bacteria 3648
173 Ga0501073_0001730 3300049589 Bacteria 16225
174 Ga0501074_0004326 3300049590 Bacteria 10143
175 Ga0501076_0009292 3300049592 Bacteria 7254
176 Ga0501077_0007747 3300049593 Bacteria 6627
177 Ga0501235_001453 3300049669 Bacteria 5060
178 Ga0501249_006399 3300049679 Bacteria 2421
179 Ga0501079_0000176 3300049741 Bacteria 36131
180 Ga0501080_0028968 3300049742 Bacteria 5155
181 Ga0501083_0018536 3300049744 Bacteria 4850
182 Ga0501262_001260 3300049759 Bacteria 2846
183 Ga0501269_002153 3300049766 Bacteria 2461
184 nmdc:mga07m45_936_c1 3300050496 Bacteria 12765
185 nmdc:mga05p37_21981_c1 3300050507 Bacteria 7728
186 nmdc:mga09592_128_c1 3300050508 Bacteria 49025
187 nmdc:mga09592_382_c1 3300050508 Bacteria 30145
188 nmdc:mga06r32_11101_c1 3300050510 Bacteria 8106
189 nmdc:mga06r32_118080_c1 3300050510 Bacteria 2614
190 nmdc:mga06r32_1283_c1 3300050510 Bacteria 22612
191 nmdc:mga06r32_2703_c1 3300050510 Bacteria 15866
192 nmdc:mga06r32_345_c1 3300050510 Bacteria 38669
193 nmdc:mga08y16_110536_c1 3300050511 Bacteria 2862
194 nmdc:mga08y16_2119_c1 3300050511 Bacteria 20346
195 nmdc:mga08y16_217225_c1 3300050511 Bacteria 1980
196 Ga0501084_0024470 3300054114 Bacteria 5037
197 Ga0501082_0006979 3300060353 Bacteria 9752
198 2643746191 2643221544 Bacteria 5886209
199 2643936034 2643221585 Bacteria 5812563
200 2644217823 2643221639 Bacteria 6649903
201 2644258441 2643221646 Bacteria 6433402
202 2644316679 2643221656 Bacteria 5809961
203 2739055046 2738541337 Bacteria 6183410
204 Ga0070690_100002331
205 rootH1_10007413
206 rootL2_10007058
207 Ga0055531_10000044
208 Ga0065715_10092507
209 Ga0070670_100047646
210 Ga0070677_10005646
211 Ga0068869_100001448
212 Ga0070682_100004071
213 Ga0070682_100043723
214 Ga0070689_100002072
215 Ga0070668_100020283
216 Ga0070675_100003820
217 Ga0070675_100012204
218 Ga0070674_100003383
219 Ga0070674_100033697
220 Ga0070673_100000485
221 Ga0070673_100080129
222 Ga0070688_100082507
223 Ga0070667_100069171
224 Ga0070705_100004191
225 Ga0070694_100028288
226 Ga0070663_100044286
227 Ga0070678_100022933
228 Ga0070678_100077141
229 Ga0070662_100003047
230 Ga0070679_100176064
231 Ga0070672_100007781
232 Ga0070686_100006807
233 Ga0070686_100048648
234 Ga0070665_100011769
235 Ga0070704_100014581
236 Ga0070664_100000115
237 Ga0068856_100076763
238 Ga0068859_100000621
239 Ga0068859_100008769
240 Ga0068864_100002656
241 Ga0068861_100001183
242 Ga0068861_100002431
243 Ga0068861_100019400
244 Ga0068870_10001410
245 Ga0068863_100006259
246 Ga0068860_100033542
247 Ga0068862_100001008
248 Ga0068862_100003604
249 Ga0068862_100013305
250 Ga0081455_10032738
251 Ga0075428_100000200
252 Ga0075428_100000513
253 Ga0075430_100000531
254 Ga0075431_100002120
255 Ga0075431_100006023
256 Ga0075431_100017302
257 Ga0075431_100156969
258 Ga0075429_100000094
259 Ga0075429_100001206
260 Ga0097620_100000621
261 Ga0097620_100008769
262 Ga0111539_10002511
263 Ga0111539_10007495
264 Ga0111539_10015254
265 Ga0111539_10016361
266 Ga0111539_10071179
267 Ga0114129_10000367
268 Ga0114129_10019254
269 Ga0105242_10032702
270 Ga0105248_10068316
271 Ga0105248_10095734
272 Ga0105249_10012908
273 Ga0157374_10093598
274 Ga0163162_10020260
275 Ga0163162_10078897
276 Ga0157375_10016556
277 Ga0157375_10026090
278 Ga0163163_10000485
279 Ga0163163_10137957
280 Ga0157380_10000154
281 Ga0157380_10015793
282 Ga0157377_10006651
283 Ga0163161_10036829
284 Ga0209050_1002348
285 Ga0209051_1005212
286 Ga0209257_1000094
287 Ga0207697_10019505
288 Ga0207682_10002698
289 Ga0207682_10007639
290 Ga0207645_10008339
291 Ga0207645_10010432
292 Ga0207643_10001457
293 Ga0207643_10019791
294 Ga0207660_10027865
295 Ga0207649_10026353
296 Ga0207652_10132976
297 Ga0207659_10004126
298 Ga0207706_10049219
299 Ga0207670_10008949
300 Ga0207704_10033730
301 Ga0207691_10000807
302 Ga0207691_10014408
303 Ga0207691_10015330
304 Ga0207691_10019933
305 Ga0207689_10002352
306 Ga0207679_10001126
307 Ga0207679_10090311
308 Ga0207651_10056619
309 Ga0207651_10078902
310 Ga0207712_10081710
311 Ga0207708_10012566
312 Ga0207708_10014749
313 Ga0207708_10044178
314 Ga0207648_10020487
315 Ga0207648_10022525
316 Ga0207676_10010260
317 Ga0207676_10028703
318 Ga0207674_10114488
319 Ga0207675_100000136
320 Ga0207675_100004528
321 Ga0207675_100006579
322 Ga0207675_100019090
323 Ga0207675_100036324
324 Ga0207675_100044280
325 Ga0207683_10047830
326 Ga0207683_10084396
327 Ga0207428_10001638
328 Ga0207428_10069862
329 Ga0268265_10003824
330 Ga0268265_10009705
331 Ga0268264_10105426
332 Ga0307515_10025462
333 Ga0307515_10031536
334 Ga0265327_10002431
335 Ga0307513_10004863
336 Ga0307513_10031548
337 Ga0307513_10039673
338 Ga0307513_10060398
339 Ga0307513_10131551
340 Ga0307509_10082616
341 Ga0307408_100000008
342 Ga0316576_10053479
343 Ga0307413_10009837
344 Ga0307413_10036622
345 Ga0307406_10014640
346 Ga0307407_10009280
347 Ga0307407_10027072
348 Ga0307412_10062549
349 Ga0307411_10000177
350 Ga0307411_10001689
351 Ga0307411_10003541
352 Ga0307415_100037223
353 Ga0373939_0000079
354 Ga0316582_0018106
355 Ga0395905_0000719
356 Ga0451791_0606583
357 Ga0451793_1440737
358 Ga0451798_0174430
359 Ga0451807_0565934
360 Ga0451807_0568474
361 Ga0451807_0961330
362 Ga0450890_001247
363 Ga0450896_003797
364 Ga0451577_0039647
365 Ga0453684_0163145
366 Ga0451576_0088209
367 Ga0495638_0052818
368 Ga0495625_0019086
369 Ga0495672_0003771
370 Ga0496114_0052785
371 Ga0501042_0117597
372 Ga0501068_0001133
373 Ga0501070_0124713
374 Ga0501071_0015620
375 Ga0501072_0040733
376 Ga0501073_0001730
377 Ga0501074_0004326
378 Ga0501076_0009292
379 Ga0501077_0007747
380 Ga0501235_001453
381 Ga0501249_006399
382 Ga0501079_0000176
383 Ga0501080_0028968
384 Ga0501083_0018536
385 Ga0501262_001260
386 Ga0501269_002153
387 nmdc:mga07m45_936_c1
388 nmdc:mga05p37_21981_c1
389 nmdc:mga09592_128_c1
390 nmdc:mga09592_382_c1
391 nmdc:mga06r32_11101_c1
392 nmdc:mga06r32_118080_c1
393 nmdc:mga06r32_1283_c1
394 nmdc:mga06r32_2703_c1
395 nmdc:mga06r32_345_c1
396 nmdc:mga08y16_110536_c1
397 nmdc:mga08y16_2119_c1
398 nmdc:mga08y16_217225_c1
399 Ga0501084_0024470
400 Ga0501082_0006979
401 2643746191
402 2643936034
403 2644217823
404 2644258441
405 2644316679
406 2739055046

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05960

DUF885

Bacterial protein of unknown function (DUF885)

53

588

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3o0y-assembly2.cif.gz_B the crystal structure of the putative lipoprotein from colwellia psychrerythraea 0.8999 27 588
3o0y-assembly4.cif.gz_A the crystal structure of the putative lipoprotein from colwellia psychrerythraea 0.8858 23 588
3o0y-assembly2.cif.gz_B the crystal structure of the putative lipoprotein from colwellia psychrerythraea 0.8649 27 588
3iuk-assembly1.cif.gz_A crystal structure of putative bacterial protein of unknown function (duf885, pf05960.1, ) from arthrobacter aurescens tc1, reveals fold similar to that of m32 carboxypeptidases 0.8594 34 582
3o0y-assembly4.cif.gz_A the crystal structure of the putative lipoprotein from colwellia psychrerythraea 0.8574 23 588
ID Description Score Start End Superfamily
af_Q54Y95_120_681_1.10.1370.30 Mainly Alpha;Orthogonal Bundle;Neurolysin; domain 3; 0.892 53 581 1.10.1370.30
af_Q54Y95_120_681_1.10.1370.30 Mainly Alpha;Orthogonal Bundle;Neurolysin; domain 3; 0.8408 53 581 1.10.1370.30
af_Q01992_254_691_1.10.1370.40 Mainly Alpha;Orthogonal Bundle;Neurolysin; domain 3; 0.4617 271 583 1.10.1370.40
af_Q01992_254_691_1.10.1370.40 Mainly Alpha;Orthogonal Bundle;Neurolysin; domain 3; 0.3529 271 583 1.10.1370.40
1wgzA00 Mainly Alpha;Orthogonal Bundle;Neurolysin; domain 3; 0.3087 182 592 1.10.1370.30
ID Description Score Start End GO Terms
AF-A0A7X5N3H8-F1-model_v4 DUF885 family protein 0.9927 438 588
AF-A0A382LXE7-F1-model_v4 DUF885 domain-containing protein 0.9919 418 591
AF-A0A2V6BWF5-F1-model_v4 DUF885 domain-containing protein 0.99 337 589
AF-M4RTT3-F1-model_v4 Lipoprotein 0.9892 437 590
AF-A0A520EL01-F1-model_v4 deleted 0.9891 423 588

Map