F310655

General Info

Members Datasets Scaffolds Average Seq Length
203 171 112 357

Family's Representative Sequence

Representative Sequence 3300003187|JGI25151J46595_10007359|JGI25151J46595_100073592
Length 379
Sequence MMKQLHDVHRDESNRHTYVLRYPLDLQLFSQEKTEKATPKKRQETRKKGQVAKSMDLSGAFILLAGFSCLFMLGGFMKDRIVELFQDVLQNRLTMDVTANNVLDYFSSIFLKLMVILAPLFISAIVIALVVNYMQVGFLFTGEPLKMKLEKIDPVKGFKNIFSMRSVVEFLKSIMKLTTIGVIVYTSLWGERDTIVMLSHVPLNDIMSFTGHLTLMLGMKIGVALCVLAALDYMYQRYEYEKSLRMSKQDIKDEFKKTEGDPLIKGKIRERQRRMALMRMMQEVPKADVVITNPTHFAIALKYDGGAMEAPEIVAKGQDYVALRIKQIAKEHGVITMENKPLARALYQRADIGDTVPADLFQAVAEVLAYVYKVKGKGN

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2162886011 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 2510917027 Brevibacillus sp. CF112 Isolate Rhizosphere
4 2512564013 Brevibacillus sp. BC25 Isolate Rhizosphere
5 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
6 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
7 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
8 2563366752 Paenibacillus pini JCM 16418 Isolate Rhizosphere
9 2571042143 Paenibacillus graminis RSA19 Isolate Unclassified
10 2571042588 Paenibacillus zanthoxyli JH29 Isolate Unclassified
11 2576861424 Paenibacillus sabinae T27 Isolate Rhizosphere
12 2579778775 Paenibacillus durus P3L-5 Isolate Unclassified
13 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
14 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
15 2600255286 Paenibacillus sp. NFR01 Isolate Rhizoplane
16 2619619294 Paenibacillus durus ATCC 35681 Isolate Unclassified
17 2643221543 Paenibacillus sp. Root52 Isolate Unclassified
18 2643221676 Paenibacillus sp. Root444D2 Isolate Unclassified
19 2671180694 Paenibacillus sp. A3 Isolate Unclassified
20 2721755693 Paenibacillus polymyxa YC0573 Isolate Rhizosphere
21 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
22 2728369359 Paenibacillus polymyxa YC0136 Isolate Rhizosphere
23 2738541295 Bacillus sp. OK085 Isolate Unclassified
24 2738541299 Paenisporosarcina sp. OV554 Isolate Unclassified
25 2744054657 Brevibacillus sp. SKDU10 Isolate Unclassified
26 2751185905 Paenibacillus kribbensis 6hRe76 Isolate Unclassified
27 2791355222 Paenibacillus oryzae 1DrF-4 Isolate Unclassified
28 2802428803 Paenibacillus peoriae NMA1017 Isolate Rhizosphere
29 2816332336 Brevibacillus laterosporus ZQ2 Isolate Unclassified
30 2818991459 Paenibacillus sp. 597 Isolate Unclassified
31 2821111986 Paenibacillus illinoisensis 582 Isolate Unclassified
32 2857453340 Paenibacillus sp. R-74130 Isolate Unclassified
33 2857460504 Brevibacillus sp. R-74223 Isolate Unclassified
34 2857465823 Brevibacillus sp. R-74266 Isolate Unclassified
35 2857472729 Cohnella sp. R-74144 Isolate Unclassified
36 2857591370 Brevibacillus sp. R-71934 Isolate Unclassified
37 2864733723 Paenibacillus sp. JGP012 Isolate Rhizosphere
38 2864997549 Paenibacillus sp. R-72005 Isolate Unclassified
39 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
40 2881636855 Paenibacillus sp. 7197 Isolate Rhizosphere
41 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
42 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
43 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
44 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
45 2889276214 Paenibacillus sp. PvR133 Isolate Rhizosphere
46 2889295896 Paenibacillus sp. PvR098 Isolate Rhizosphere
47 2898907183 Brevibacillus sp. SYP-B805 Isolate Rhizosphere
48 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
49 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
50 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
51 2904595352 Paenibacillus sp. 1182 Isolate Unclassified
52 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
53 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
54 2915597211 Brevibacillus brevis Ag35 Isolate Nodule
55 2915606848 Brevibacillus sp. HD1.4A Isolate Rhizosphere
56 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
57 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
58 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
59 2929183550 Brevibacillus sp. R-71971 Hybrid assembly Isolate Unclassified
60 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
61 2929297113 Heliophilum fasciatum MTM Isolate Rhizosphere
62 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
63 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
64 2939679117 Paenibacillus sp. 4624 Isolate Rhizosphere
65 2939702853 Paenibacillus sp. PvR008 Isolate Rhizosphere
66 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
67 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
68 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
69 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
70 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
71 2971511577 Paenibacillus apii 7124 Isolate Rhizosphere
72 2980125574 Paenibacillus sp. tmac-D7 Isolate Unclassified
73 2980176882 Paenibacillus apii 7028 Isolate Rhizosphere
74 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
75 2981284811 Paenibacillus sp. PvR052 Isolate Rhizosphere
76 2981289755 Paenibacillus sp. PvR148 Isolate Rhizosphere
77 2981980479 Paenibacillus sp. PvR018 Isolate Rhizosphere
78 2981985349 Paenibacillus sp. PvR053 Isolate Rhizosphere
79 2984527788 Paenibacillus sp. SORGH_AS306 Isolate Aerial Root
80 2984532647 Paenibacillus sp. SORGH_AS338 Isolate Aerial Root
81 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
82 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
83 2996706504 Paenibacillus sp. OT2-17 Isolate Rhizosphere
84 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
85 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
86 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
87 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
88 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
89 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
90 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
91 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
92 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
93 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
94 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
95 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
96 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
97 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
98 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
99 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
100 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
101 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
102 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
103 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
104 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
105 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
106 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
107 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
108 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
109 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
110 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
111 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
112 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
113 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
114 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
115 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
116 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
117 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
118 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
119 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
120 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
121 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
122 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
123 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
124 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
125 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
126 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
127 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
128 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
129 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
130 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
131 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
132 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
133 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
134 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
135 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
136 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
137 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
138 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
139 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
140 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
141 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
142 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
143 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
144 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
145 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
146 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
147 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
148 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
149 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
150 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
151 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
152 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
153 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
154 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
155 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
156 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
157 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
158 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
159 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
160 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
161 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
162 648028048 Paenibacillus polymyxa E681 Isolate Rhizosphere
163 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
164 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere
165 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
166 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
167 8055632911 Paenibacillus radicibacter N1-5-1-14 Isolate Unclassified
168 8056533031 Paenibacillus qinlingensis TEGT-2 Isolate Unclassified
169 8057473075 Paenibacillus endoradicis T3-5-0-4 Isolate Unclassified
170 8057733483 Paenibacillus apiarius MW-14 Isolate Rhizosphere
171 8057977335 Paenibacillus oenotherae DT7-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 55.17
Metatranscriptomes 0
Isolates 44.83

Biome Distribution

Category Percentage (%)
Aerial Root 0.99
Bulb 0
Endosphere 8.87
Nodule 0.99
Rhizoplane 0.99
Rhizosphere 53.2
Stem 0
Stem Tuber 0
Unclassified 34.98

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_3887973 2162886007 Bacteria 29324
2 MRS1b_contig_7878794 2162886011 Bacteria 1450
3 JGI25162J39368_1004698 3300002737 Bacteria 3045
4 JGI25151J46595_10007359 3300003187 Bacteria 5406
5 Ga0055538_1000061 3300003751 Bacteria 108045
6 Ga0055532_1002426 3300003758 Bacteria 3895
7 Ga0055535_1001044 3300003761 Bacteria 17405
8 Ga0055541_1000159 3300003841 Bacteria 33167
9 Ga0065704_10070582 3300005289 Bacteria 19821
10 Ga0065707_10082176 3300005295 Bacteria 20224
11 Ga0065707_10095737 3300005295 Bacteria 3343
12 Ga0070690_100018306 3300005330 Bacteria 4229
13 Ga0070689_100070348 3300005340 Bacteria 2732
14 Ga0068853_100161982 3300005539 Bacteria 2019
15 Ga0070686_100282697 3300005544 Bacteria 1224
16 Ga0068856_100535692 3300005614 Bacteria 1192
17 Ga0068852_100389180 3300005616 Bacteria 1369
18 Ga0068859_100129622 3300005617 Bacteria 2593
19 Ga0068858_100022974 3300005842 Bacteria 5815
20 Ga0081455_10086507 3300005937 Bacteria 2553
21 Ga0075431_100025334 3300006847 Bacteria 6081
22 Ga0075433_10067883 3300006852 Bacteria 3129
23 Ga0075434_100002175 3300006871 Bacteria 17085
24 Ga0075436_100000689 3300006914 Bacteria 22260
25 Ga0097620_100129627 3300006931 Bacteria 2593
26 Ga0105244_10046412 3300009036 Bacteria 2232
27 Ga0105240_10010999 3300009093 Bacteria 12671
28 Ga0105240_10014513 3300009093 Bacteria 10754
29 Ga0111539_10145637 3300009094 Bacteria 2773
30 Ga0105237_10000404 3300009545 Bacteria 61362
31 Ga0105238_10002108 3300009551 Bacteria 20093
32 Ga0105239_10000316 3300010375 Bacteria 71183
33 Ga0209784_100037 3300025224 Bacteria 259956
34 Ga0209784_101403 3300025224 Bacteria 3267
35 Ga0209566_100076 3300025225 Bacteria 161921
36 Ga0209566_100118 3300025225 Bacteria 105475
37 Ga0209566_100253 3300025225 Bacteria 51127
38 Ga0209147_100053 3300025229 Bacteria 267615
39 Ga0209437_100542 3300025233 Bacteria 25920
40 Ga0209258_100613 3300025242 Bacteria 28752
41 Ga0209025_1003338 3300025294 Bacteria 15397
42 Ga0209025_1038642 3300025294 Bacteria 2095
43 Ga0207655_1022472 3300025728 Bacteria 3160
44 Ga0207671_10011304 3300025914 Bacteria 7274
45 Ga0207670_10058452 3300025936 Bacteria 2619
46 Ga0207689_10243907 3300025942 Bacteria 1485
47 Ga0207703_10027180 3300026035 Bacteria 4506
48 Ga0207639_10079596 3300026041 Bacteria 2590
49 Ga0207702_10037331 3300026078 Bacteria 4066
50 Ga0207698_10377214 3300026142 Bacteria 1348
51 Ga0207428_10056985 3300027907 Bacteria 3103
52 Ga0307509_10000178 3300031507 Bacteria 100228
53 Ga0307413_10249405 3300031824 Bacteria 1316
54 Ga0373924_0007984 3300035410 Bacteria 3831
55 Ga0395899_0163645 3300037312 Bacteria 1570
56 Ga0439436_0021811 3300041404 Bacteria 1900
57 Ga0439439_0001748 3300041406 Bacteria 4435
58 Ga0439449_0000070 3300042007 Bacteria 32061
59 Ga0451577_0001985 3300042876 Bacteria 25597
60 Ga0466966_0111644 3300044684 Bacteria 1685
61 Ga0466961_0040808 3300044693 Bacteria 2975
62 Ga0453684_0000873 3300044712 Bacteria 101078
63 Ga0453684_0001621 3300044712 Bacteria 61550
64 Ga0453684_0017282 3300044712 Bacteria 11187
65 Ga0453684_0231252 3300044712 Bacteria 2134
66 Ga0453684_0517470 3300044712 Bacteria 1319
67 Ga0466968_0003585 3300044735 Bacteria 5744
68 Ga0466959_0004592 3300045049 Bacteria 9269
69 Ga0451576_0000574 3300045051 Bacteria 78393
70 Ga0451576_0426245 3300045051 Bacteria 1392
71 Ga0466967_0097153 3300045976 Bacteria 2688
72 Ga0495630_0309645 3300046517 Unclassified 1207
73 Ga0495661_0032291 3300046665 Bacteria 3311
74 Ga0495649_0015946 3300046694 Bacteria 4266
75 Ga0496112_0064960 3300048915 Bacteria 3602
76 Ga0496116_0001367 3300048919 Bacteria 27600
77 Ga0496116_0002535 3300048919 Bacteria 19132
78 Ga0496116_0005512 3300048919 Bacteria 11696
79 Ga0496116_0070946 3300048919 Bacteria 2208
80 Ga0496117_0004998 3300048920 Bacteria 14225
81 Ga0496119_0000072 3300048922 Bacteria 153582
82 Ga0496119_0026912 3300048922 Bacteria 3972
83 Ga0496120_0000094 3300048923 Bacteria 146405
84 Ga0496120_0009345 3300048923 Bacteria 6970
85 Ga0496121_0065741 3300048924 Bacteria 2948
86 Ga0496122_0000429 3300048925 Bacteria 88472
87 Ga0496122_0011716 3300048925 Bacteria 8837
88 Ga0496122_0013119 3300048925 Bacteria 8151
89 Ga0496122_0019520 3300048925 Bacteria 6186
90 Ga0496122_0072638 3300048925 Bacteria 2445
91 Ga0496122_0074674 3300048925 Bacteria 2397
92 Ga0496123_0002669 3300048926 Bacteria 21505
93 Ga0496123_0009064 3300048926 Bacteria 9012
94 Ga0496123_0071857 3300048926 Bacteria 2156
95 Ga0496123_0080330 3300048926 Bacteria 1988
96 Ga0496123_0103832 3300048926 Bacteria 1645
97 Ga0496124_0000340 3300048927 Bacteria 85365
98 Ga0496124_0014543 3300048927 Bacteria 7602
99 Ga0496124_0043974 3300048927 Bacteria 3836
100 Ga0496124_0057734 3300048927 Bacteria 3269
101 Ga0496125_0001554 3300048928 Bacteria 32767
102 Ga0496125_0006231 3300048928 Bacteria 12974
103 Ga0496126_0000593 3300048929 Bacteria 68570
104 Ga0496126_0003637 3300048929 Bacteria 19261
105 Ga0496126_0016123 3300048929 Bacteria 7487
106 Ga0501032_0178661 3300049569 Bacteria 1390
107 nmdc:mga08y16_11615_c1 3300050511 Bacteria 9251
108 nmdc:mga08y16_154555_c1 3300050511 Bacteria 2384
109 nmdc:mga0rr50_8304_c1 3300050513 Bacteria 6459
110 nmdc:mga0a205_457_c1 3300050515 Bacteria 31670
111 Ga0500556_0000310 3300053104 Bacteria 37052
112 Ga0500622_0007141 3300053156 Bacteria 6373

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048929 Ga0496126_0016123 Ga0496126_0016123_6541_7470 308
2 3300005330 Ga0070690_100018306 Ga0070690_1000183062 315
3 3300005340 Ga0070689_100070348 Ga0070689_1000703482 315
4 3300005544 Ga0070686_100282697 Ga0070686_1002826971 315
5 3300005614 Ga0068856_100535692 Ga0068856_1005356921 315
6 3300005617 Ga0068859_100129622 Ga0068859_1001296222 315
7 3300005842 Ga0068858_100022974 Ga0068858_1000229742 315
8 3300006852 Ga0075433_10067883 Ga0075433_100678833 315
9 3300006871 Ga0075434_100002175 Ga0075434_10000217516 315
10 3300006914 Ga0075436_100000689 Ga0075436_1000006893 315
11 3300006931 Ga0097620_100129627 Ga0097620_1001296272 315
12 3300009094 Ga0111539_10145637 Ga0111539_101456372 315
13 3300025936 Ga0207670_10058452 Ga0207670_100584522 315
14 3300026035 Ga0207703_10027180 Ga0207703_100271804 315
15 3300026078 Ga0207702_10037331 Ga0207702_100373315 315
16 3300027907 Ga0207428_10056985 Ga0207428_100569853 315
17 3300050511 nmdc:mga08y16_11615_c1 nmdc:mga08y16_11615_c1_7548_8636 315
18 3300050513 nmdc:mga0rr50_8304_c1 nmdc:mga0rr50_8304_c1_2559_3647 315
19 3300050515 nmdc:mga0a205_457_c1 nmdc:mga0a205_457_c1_18336_19424 315
20 3300031824 Ga0307413_10249405 Ga0307413_102494052 327
21 3300025224 Ga0209784_101403 Ga0209784_1014033 328
22 3300044684 Ga0466966_0111644 Ga0466966_0111644_116_1189 328
23 3300044693 Ga0466961_0040808 Ga0466961_0040808_1582_2655 328
24 3300044735 Ga0466968_0003585 Ga0466968_0003585_841_1950 328
25 3300045049 Ga0466959_0004592 Ga0466959_0004592_3777_4886 328
26 3300048919 Ga0496116_0070946 Ga0496116_0070946_968_2050 329
27 3300048926 Ga0496123_0071857 Ga0496123_0071857_947_2029 329
28 3300009036 Ga0105244_10046412 Ga0105244_100464123 330
29 3300025728 Ga0207655_1022472 Ga0207655_10224722 330
30 3300048919 Ga0496116_0005512 Ga0496116_0005512_2156_3265 330
31 3300048925 Ga0496122_0072638 Ga0496122_0072638_1009_2118 330
32 3300048927 Ga0496124_0043974 Ga0496124_0043974_1914_3023 330
33 3300025225 Ga0209566_100118 Ga0209566_10011867 333
34 3300002737 JGI25162J39368_1004698 JGI25162J39368_10046982 334
35 3300025233 Ga0209437_100542 Ga0209437_10054211 334
36 3300046694 Ga0495649_0015946 Ga0495649_0015946_2593_3648 338
37 3300045051 Ga0451576_0000574 Ga0451576_0000574_70170_71252 342
38 3300048919 Ga0496116_0001367 Ga0496116_0001367_8976_10061 342
39 3300048922 Ga0496119_0000072 Ga0496119_0000072_25457_26542 342
40 3300048923 Ga0496120_0000094 Ga0496120_0000094_55596_56681 342
41 3300048925 Ga0496122_0013119 Ga0496122_0013119_1452_2537 342
42 3300048926 Ga0496123_0103832 Ga0496123_0103832_57_1142 342
43 3300048927 Ga0496124_0000340 Ga0496124_0000340_34038_35123 342
44 3300048929 Ga0496126_0000593 Ga0496126_0000593_14094_15179 342
45 3300025942 Ga0207689_10243907 Ga0207689_102439071 345
46 3300045976 Ga0466967_0097153 Ga0466967_0097153_1204_2253 347
47 3300048919 Ga0496116_0002535 Ga0496116_0002535_15873_16940 348
48 3300048925 Ga0496122_0011716 Ga0496122_0011716_5631_6713 348
49 3300048925 Ga0496122_0074674 Ga0496122_0074674_1116_2183 348
50 3300048926 Ga0496123_0080330 Ga0496123_0080330_798_1880 348
51 3300048929 Ga0496126_0003637 Ga0496126_0003637_14105_15187 348
52 iso_pu_bacteria 2857472729 2857472887 348
53 3300003187 JGI25151J46595_10007359 JGI25151J46595_100073592 349
54 3300003751 Ga0055538_1000061 Ga0055538_100006166 349
55 3300003758 Ga0055532_1002426 Ga0055532_10024263 349
56 3300003761 Ga0055535_1001044 Ga0055535_100104414 349
57 3300003841 Ga0055541_1000159 Ga0055541_10001595 349
58 3300025224 Ga0209784_100037 Ga0209784_100037211 349
59 3300025225 Ga0209566_100076 Ga0209566_100076126 349
60 3300025225 Ga0209566_100253 Ga0209566_10025323 349
61 3300025229 Ga0209147_100053 Ga0209147_10005384 349
62 3300025242 Ga0209258_100613 Ga0209258_1006137 349
63 3300025294 Ga0209025_1038642 Ga0209025_10386421 349
64 3300044712 Ga0453684_0001621 Ga0453684_0001621_26653_27717 349
65 3300048915 Ga0496112_0064960 Ga0496112_0064960_1998_3080 349
66 3300048920 Ga0496117_0004998 Ga0496117_0004998_2378_3490 349
67 3300048922 Ga0496119_0026912 Ga0496119_0026912_603_1715 349
68 3300048923 Ga0496120_0009345 Ga0496120_0009345_404_1516 349
69 3300048924 Ga0496121_0065741 Ga0496121_0065741_1804_2916 349
70 3300048925 Ga0496122_0000429 Ga0496122_0000429_37707_38843 349
71 3300048925 Ga0496122_0019520 Ga0496122_0019520_2295_3386 349
72 3300048926 Ga0496123_0002669 Ga0496123_0002669_14080_15171 349
73 3300048926 Ga0496123_0009064 Ga0496123_0009064_3347_4459 349
74 3300048927 Ga0496124_0014543 Ga0496124_0014543_4865_5956 349
75 3300048927 Ga0496124_0057734 Ga0496124_0057734_1788_2900 349
76 3300048928 Ga0496125_0001554 Ga0496125_0001554_28284_29396 349
77 3300048928 Ga0496125_0006231 Ga0496125_0006231_2222_3313 349
78 iso_pu_bacteria 2510917027 2511176697 349
79 iso_pu_bacteria 2512564013 2512636959 349
80 iso_pu_bacteria 2512564039 2512734601 349
81 iso_pu_bacteria 2524023129 2524186347 349
82 iso_pu_bacteria 2548877040 2550902154 349
83 iso_pu_bacteria 2563366752 2563929641 349
84 iso_pu_bacteria 2571042143 2571531485 349
85 iso_pu_bacteria 2571042588 2573039009 349
86 iso_pu_bacteria 2576861424 2578337475 349
87 iso_pu_bacteria 2579778775 2580932809 349
88 iso_pu_bacteria 2585428059 2587738104 349
89 iso_pu_bacteria 2593339198 2595316674 349
90 iso_pu_bacteria 2600255286 2601638515 349
91 iso_pu_bacteria 2619619294 2621275804 349
92 iso_pu_bacteria 2643221543 2643739992 349
93 iso_pu_bacteria 2643221676 2644421423 349
94 iso_pu_bacteria 2671180694 2673817522 349
95 iso_pu_bacteria 2721755693 2723603519 349
96 iso_pu_bacteria 2728368933 2728531557 349
97 iso_pu_bacteria 2728369359 2730139514 349
98 iso_pu_bacteria 2738541295 2738816364 349
99 iso_pu_bacteria 2738541299 2738838629 349
100 iso_pu_bacteria 2751185905 2753808171 349
101 iso_pu_bacteria 2791355222 2793182981 349
102 iso_pu_bacteria 2802428803 2802435963 349
103 iso_pu_bacteria 2818991459 2819670168 349
104 iso_pu_bacteria 2821111986 2821113563 349
105 iso_pu_bacteria 2857453340 2857456920 349
106 iso_pu_bacteria 2857460504 2857461494 349
107 iso_pu_bacteria 2857465823 2857466804 349
108 iso_pu_bacteria 2857591370 2857592803 349
109 iso_pu_bacteria 2864733723 2864734150 349
110 iso_pu_bacteria 2864997549 2864997618 349
111 iso_pu_bacteria 2865002811 2865005949 349
112 iso_pu_bacteria 2881636855 2881637181 349
113 iso_pu_bacteria 2885526491 2885526932 349
114 iso_pu_bacteria 2888578766 2888581373 349
115 iso_pu_bacteria 2889042446 2889044814 349
116 iso_pu_bacteria 2889049205 2889050002 349
117 iso_pu_bacteria 2889276214 2889279444 349
118 iso_pu_bacteria 2889295896 2889296431 349
119 iso_pu_bacteria 2898907183 2898907681 349
120 iso_pu_bacteria 2904162308 2904165457 349
121 iso_pu_bacteria 2904490793 2904491700 349
122 iso_pu_bacteria 2904595352 2904596773 349
123 iso_pu_bacteria 2904755435 2904756941 349
124 iso_pu_bacteria 2907202186 2907203797 349
125 iso_pu_bacteria 2915597211 2915602144 349
126 iso_pu_bacteria 2915606848 2915610978 349
127 iso_pu_bacteria 2919160200 2919160957 349
128 iso_pu_bacteria 2919425241 2919430970 349
129 iso_pu_bacteria 2929183550 2929187241 349
130 iso_pu_bacteria 2929297113 2929298487 349
131 iso_pu_bacteria 2931384279 2931388250 349
132 iso_pu_bacteria 2938649242 2938652122 349
133 iso_pu_bacteria 2939679117 2939681381 349
134 iso_pu_bacteria 2939702853 2939703502 349
135 iso_pu_bacteria 2945991243 2945993143 349
136 iso_pu_bacteria 2946053406 2946055897 349
137 iso_pu_bacteria 2968558590 2968561458 349
138 iso_pu_bacteria 2971403814 2971409302 349
139 iso_pu_bacteria 2971410472 2971411721 349
140 iso_pu_bacteria 2971511577 2971511942 349
141 iso_pu_bacteria 2980125574 2980128200 349
142 iso_pu_bacteria 2980176882 2980177082 349
143 iso_pu_bacteria 2981284811 2981284896 349
144 iso_pu_bacteria 2981289755 2981289840 349
145 iso_pu_bacteria 2981980479 2981981522 349
146 iso_pu_bacteria 2981985349 2981986418 349
147 iso_pu_bacteria 2984527788 2984528994 349
148 iso_pu_bacteria 2984532647 2984535096 349
149 iso_pu_bacteria 2988225383 2988226528 349
150 iso_pu_bacteria 2996632988 2996638555 349
151 iso_pu_bacteria 2996706504 2996710323 349
152 iso_pu_bacteria 648028048 648169828 349
153 iso_pu_bacteria 8054465665 8054469083 349
154 iso_pu_bacteria 8054795415 8054795949 349
155 iso_pu_bacteria 8056533031 8056539694 349
156 iso_pu_bacteria 8057733483 8057737881 349
157 iso_pu_bacteria 8057977335 8057978722 349
158 3300053156 Ga0500622_0007141 Ga0500622_0007141_1095_2177 350
159 iso_pu_bacteria 2744054657 2745166669 350
160 iso_pu_bacteria 2816332336 2817619480 350
161 iso_pu_bacteria 8002317523 8002321782 350
162 iso_pu_bacteria 8046991243 8046997916 350
163 3300005937 Ga0081455_10086507 Ga0081455_100865074 351
164 3300006847 Ga0075431_100025334 Ga0075431_1000253346 351
165 3300025294 Ga0209025_1003338 Ga0209025_10033389 351
166 3300031507 Ga0307509_10000178 Ga0307509_1000017822 351
167 3300035410 Ga0373924_0007984 Ga0373924_0007984_1614_2693 351
168 3300041404 Ga0439436_0021811 Ga0439436_0021811_637_1734 351
169 3300041406 Ga0439439_0001748 Ga0439439_0001748_1220_2317 351
170 3300042007 Ga0439449_0000070 Ga0439449_0000070_7471_8568 351
171 3300046517 Ga0495630_0309645 Ga0495630_0309645_67_1155 351
172 3300046665 Ga0495661_0032291 Ga0495661_0032291_203_1342 351
173 3300049569 Ga0501032_0178661 Ga0501032_0178661_162_1226 351
174 3300050511 nmdc:mga08y16_154555_c1 nmdc:mga08y16_154555_c1_515_1579 351
175 3300053104 Ga0500556_0000310 Ga0500556_0000310_13129_14211 351
176 iso_pu_bacteria 2904113452 2904115051 351
177 iso_pu_bacteria 2925326138 2925329944 351
178 iso_pu_bacteria 2929206907 2929210343 351
179 iso_pu_bacteria 2980182181 2980184612 351
180 iso_pu_bacteria 8055632911 8055635499 351
181 iso_pu_bacteria 8057473075 8057474044 351
182 3300037312 Ga0395899_0163645 Ga0395899_0163645_13_1137 352
183 3300044712 Ga0453684_0000873 Ga0453684_0000873_53992_55059 352
184 3300005539 Ga0068853_100161982 Ga0068853_1001619822 353
185 3300009545 Ga0105237_10000404 Ga0105237_1000040415 353
186 3300025914 Ga0207671_10011304 Ga0207671_100113043 353
187 3300026041 Ga0207639_10079596 Ga0207639_100795962 353
188 3300005616 Ga0068852_100389180 Ga0068852_1003891802 354
189 3300009093 Ga0105240_10010999 Ga0105240_100109996 354
190 3300009551 Ga0105238_10002108 Ga0105238_1000210822 354
191 3300010375 Ga0105239_10000316 Ga0105239_1000031630 354
192 3300026142 Ga0207698_10377214 Ga0207698_103772142 354
193 3300044712 Ga0453684_0231252 Ga0453684_0231252_909_1973 354
194 3300044712 Ga0453684_0517470 Ga0453684_0517470_141_1229 355
195 2162886007 SwRhRL2b_contig_3887973 SwRhRL2b_0841.00009610 357
196 2162886011 MRS1b_contig_7878794 MRS1b_0237.00001790 357
197 3300005289 Ga0065704_10070582 Ga0065704_1007058211 357
198 3300005295 Ga0065707_10082176 Ga0065707_1008217611 357
199 3300005295 Ga0065707_10095737 Ga0065707_100957372 357
200 3300009093 Ga0105240_10014513 Ga0105240_100145135 357
201 3300042876 Ga0451577_0001985 Ga0451577_0001985_8019_9092 357
202 3300044712 Ga0453684_0017282 Ga0453684_0017282_5666_6739 357
203 3300045051 Ga0451576_0426245 Ga0451576_0426245_183_1286 357

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01312

Bac_export_2

FlhB HrpN YscU SpaS Family

31

371

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
3bzx-assembly1.cif.gz_B crystal structure of the mutated h265a escu c-terminal domain 0.9637 268 340
5cul-assembly1.cif.gz_B crystal structure of the pscu c-terminal domain 0.9606 265 341
3b1s-assembly3.cif.gz_F crystal structure of the cytoplasmic domain of flhb from aquifex aeolicus 0.957 265 342
3bzz-assembly1.cif.gz_B crystal structural of the mutated r313t escu/spas c-terminal domain 0.9518 265 343
3t7y-assembly1.cif.gz_A structure of an autocleavage-inactive mutant of the cytoplasmic domain of ct091, the yscu homologue of chlamydia trachomatis 0.9516 252 342
ID Description Score Start End Superfamily
af_P76299_269_352_3.40.1690.10 Alpha Beta;3-Layer(aba) Sandwich;name from scop;secretion proteins EscU 0.9883 265 345 3.40.1690.10
3c03C00 Alpha Beta;3-Layer(aba) Sandwich;name from scop;secretion proteins EscU 0.9703 268 343 3.40.1690.10
5culB00 Alpha Beta;3-Layer(aba) Sandwich;name from scop;secretion proteins EscU 0.9606 265 341 3.40.1690.10
3b1sF00 Alpha Beta;3-Layer(aba) Sandwich;name from scop;secretion proteins EscU 0.957 265 342 3.40.1690.10
3t7yB00 Alpha Beta;3-Layer(aba) Sandwich;name from scop;secretion proteins EscU 0.9519 252 342 3.40.1690.10
ID Description Score Start End GO Terms
AF-A0A3C0YTU4-F1-model_v4 Flagellar biosynthesis protein FlhB 0.9785 258 351 GO:0005886
GO:0009306
AF-X0VW80-F1-model_v4 Flagellar biosynthesis protein FlhB 0.9742 239 347 GO:0005886
GO:0009306
AF-A0A3C0YTU4-F1-model_v4 Flagellar biosynthesis protein FlhB 0.9584 258 351 GO:0005886
GO:0009306
AF-A0A7T9C6G8-F1-model_v4 deleted 0.9577 231 347
AF-A0A849ESY8-F1-model_v4 Flagellar biosynthesis protein FlhB 0.9464 252 351 GO:0005886
GO:0009306

Feature Viewer

pLDDT pTM Quality
84.9 0.56 Medium
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Predicted Structure (AlphaFold2)

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