F310378

General Info

Members Datasets Scaffolds Average Seq Length
202 162 93 208

Family's Representative Sequence

Representative Sequence 3300048920|Ga0496117_0021514|Ga0496117_0021514_3544_4263
Length 239
Sequence VATRPLVFRKDAVCLQVRRGETHAERTSMQNYFESPFRGITLDKQITNPNIVVGRYSYYSGYYHGHSFDDCARYLLPDEGADRLIIGSFCSIGSGASFIMAGNQGHRNDWISTFPFYWMSEVPAFAGAQNGYKPAGDTVIGNDVWIGSEAVIMPGVKVGDGAVIGTRALVTRDVEPYAIVGGNPARNIRLRFDERLIAMLMEMQWWNWPDEQLHQVMPLLTSGDIETLYEHWQAGINVV

Samples

Sample ID Description Type Environment
1 2508501114 Microvirga lotononidis WSM3557 Isolate Nodule
2 2512047030 Paraburkholderia tuberum STM678 Isolate Nodule
3 2513237146 Rhizobium mongolense USDA 1844 (Illumina) Isolate Nodule
4 2523231067 Pleomorphomonas oryzae DSM 16300 Isolate Unclassified
5 2524023250 Niveispirillum irakense DSM 11586 Isolate Unclassified
6 2537561587 Agrobacterium tumefaciens Cherry 2E-2-2 Isolate Rhizosphere
7 2554235341 Pseudomonas protegens CHA0 Isolate Rhizosphere
8 2565956521 Vibrio rhizosphaerae DSM 18581 Isolate Rhizosphere
9 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
10 2599185160 Pseudomonas sp. NFPP25 Isolate Rhizoplane
11 2599185161 Pseudomonas sp. NFPP09 Isolate Rhizoplane
12 2599185162 Pseudomonas sp. NFPP10 Isolate Rhizoplane
13 2599185163 Pseudomonas sp. NFPP12 Isolate Rhizoplane
14 2599185164 Pseudomonas sp. NFPP13 Isolate Rhizoplane
15 2599185165 Pseudomonas sp. NFPP18 Isolate Rhizoplane
16 2599185166 Pseudomonas sp. NFPP08 Isolate Rhizoplane
17 2599185168 Pseudomonas sp. NFPP05 Isolate Rhizoplane
18 2599185170 Rhizobium mongolense USDA 1844 (PacBio) Isolate Nodule
19 2599185181 Pseudomonas sp. NFPP17 Isolate Rhizoplane
20 2599185182 Pseudomonas sp. NFPP19 Isolate Rhizoplane
21 2599185186 Pseudomonas sp. NFPP15 Isolate Rhizoplane
22 2599185210 Rhizobium sp. NFACC06-2 Isolate Rhizoplane
23 2599185356 Pseudomonas sp. NFPP14 Isolate Rhizoplane
24 2600255279 Rhizobium sp. NFIX01 Isolate Rhizoplane
25 2600255308 Rhizobium sp. NFIX02 Isolate Rhizoplane
26 2600255313 Pseudomonas sp. NFPP16 Isolate Rhizoplane
27 2606217733 Pseudomonas aeruginosa NFHH01 Isolate Rhizoplane
28 2643221580 Devosia sp. Root635 Isolate Unclassified
29 2643221582 Rhizobium sp. Root651 Isolate Unclassified
30 2643221591 Devosia sp. Root685 Isolate Unclassified
31 2643221629 Devosia sp. Root105 Isolate Unclassified
32 2643221662 Devosia sp. Root413D1 Isolate Unclassified
33 2643221733 Bosea sp. Root381 Isolate Unclassified
34 2648501241 Vibrio splendidus UCD-SED7 Isolate Rhizosphere
35 2651869818 Vibrio splendidus UCD-SED10 Isolate Rhizosphere
36 2667528171 Pseudomonas sp. NFPP22 Isolate Rhizoplane
37 2738541273 Elizabethkingia sp. YR214 Isolate Unclassified
38 2738543014 Elizabethkingia sp. YR191 Isolate Unclassified
39 2738543017 Bacillus sp. OV186 Isolate Unclassified
40 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
41 2747842428 Stenotrophomonas sp. WCS2014-113 Isolate Unclassified
42 2751185800 Brucella pituitosa AA2 Isolate Unclassified
43 2751185877 Chryseobacterium artocarpi UTM-3 Isolate Rhizosphere
44 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
45 2775506901 Microvirga ossetica V5/3m Isolate Unclassified
46 2818991439 Agrobacterium tumefaciens 1187 Isolate Unclassified
47 2818991464 Pseudomonas protegens 3295 Isolate Rhizosphere
48 2838035591 Rhizobium mongolense SEMIA 4087 Isolate Nodule
49 2838661181 Rhizobium mongolense SEMIA 402 Isolate Nodule
50 2838675328 Agrobacterium radiobacter SEMIA 410 Isolate Nodule
51 2838714209 Agrobacterium radiobacter SEMIA 435 Isolate Nodule
52 2838719591 Agrobacterium radiobacter SEMIA 436 Isolate Nodule
53 2838724970 Agrobacterium radiobacter SEMIA 437 Isolate Nodule
54 2841760612 Bosea sp. Tri-49 Isolate Nodule
55 2841846520 Agrobacterium radiobacter SEMIA 440 Isolate Nodule
56 2841859092 Agrobacterium radiobacter SEMIA 4026 Isolate Nodule
57 2842124991 Agrobacterium radiobacter SEMIA 434 Isolate Nodule
58 2842130223 Agrobacterium radiobacter SEMIA 441 Isolate Nodule
59 2842152218 Agrobacterium radiobacter SEMIA 457 Isolate Nodule
60 2842170452 Agrobacterium radiobacter SEMIA 461 Isolate Nodule
61 2842175837 Agrobacterium radiobacter SEMIA 462 Isolate Nodule
62 2842187318 Agrobacterium radiobacter SEMIA 464 Isolate Nodule
63 2842211629 Agrobacterium radiobacter SEMIA 472 Isolate Nodule
64 2842224351 Agrobacterium radiobacter SEMIA 480 Isolate Nodule
65 2842482326 Rhizobium lusitanum SEMIA 4060 Isolate Nodule
66 2842515876 Agrobacterium radiobacter SEMIA 4072 Isolate Nodule
67 2844104063 Bosea sp. Tri-39 Isolate Nodule
68 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
69 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
70 2851246043 Bosea sp. Tri-54 Isolate Nodule
71 2852680915 Sphingopyxis sp. JAI128 Isolate Rhizosphere
72 2854681122 Luteovulum sphaeroides SCJ Isolate Unclassified
73 2882806704 Pelagerythrobacter rhizovicinus AY-3R Isolate Rhizosphere
74 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
75 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
76 2891373044 Shinella sp. AETb1-6 Isolate Rhizosphere
77 2899792073 Agrobacterium deltaense CNPSo 3391 Isolate Nodule
78 2917070673 Pseudomonas protegens CHA0 Isolate Rhizosphere
79 2919114240 Agrobacterium tumefaciens 1457 Isolate Rhizosphere
80 2919493220 Aeromonas salmonicida salmonicida 3466 Isolate Unclassified
81 2919692658 Algoriphagus sp. 4150 Isolate Rhizosphere
82 2921643360 Paraburkholderia steynii HC1.1ba Isolate Nodule
83 2923556063 Rhizobium tibeticum 3740 Isolate Unclassified
84 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
85 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
86 2932401849 Devosia sp. 2618 Isolate Rhizosphere
87 2933006813 Rhizobium sp. SEMIA 439 Isolate Unclassified
88 2933011516 Rhizobium sp. SEMIA 4032 Isolate Unclassified
89 2933594066 Agrobacterium fabrum 35/80 Isolate Nodule
90 2935353572 Pseudomonas protegens TECH19 Isolate Unclassified
91 2939669807 Kaistia defluvii 3207 Isolate Rhizosphere
92 2941485952 Brevundimonas faecalis 2814 Isolate Rhizosphere
93 2979100975 Agrobacterium pusense SORGH_AS 755 Isolate Unclassified
94 2984509177 Agrobacterium pusense SORGH_AS260 Isolate Aerial Root
95 2984518228 Agrobacterium pusense SORGH_AS285 Isolate Aerial Root
96 2984537506 Agrobacterium sp. SORGH_AS440 Isolate Aerial Root
97 2984601300 Rhizobium pusense SORGH_AS1083 Isolate Aerial Root
98 2995392953 Martelella limonii NBRC 109441 Isolate Unclassified
99 2996336353 Mesorhizobium sp. YM1C-6-2 Isolate Unclassified
100 3000017691 Rhodobacteraceae bacterium GH2-2 Isolate Rhizosphere
101 3000865235 Altericroceibacterium indicum DSM 18604 Isolate Rhizosphere
102 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
103 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
104 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
105 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
106 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
107 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
108 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
109 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
110 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
111 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
112 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
113 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
114 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
115 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
116 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
117 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
118 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
119 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
120 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
121 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
122 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
123 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
124 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
125 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
126 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
127 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
128 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
129 3300042533 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0826F_E14_072516_1472 Metagenome Rhizosphere
130 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
131 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
132 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
133 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
134 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
135 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
136 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
137 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
138 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
139 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
140 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
141 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
142 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
143 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
144 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
145 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
146 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
147 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
148 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
149 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
150 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
151 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
152 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
153 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
154 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
155 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
156 637000220 Pseudomonas protegens Pf-5 Isolate Rhizoplane
157 8003570095 Agrobacterium rhizogenes GBBC3284 Isolate Unclassified
158 8005542996 Rhizobium grahamii CCGM3 Isolate Unclassified
159 8019769354 Pseudomonas sp. MSSRFD41 Isolate Rhizosphere
160 8054563764 Acuticoccus kalidii M5D2P5 Isolate Unclassified
161 8057101203 Sphingomonas lycopersici MMSM20 Isolate Rhizosphere
162 8057798959 Pseudomonas piscis BW16M1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 46.04
Metatranscriptomes 0
Isolates 53.96

Biome Distribution

Category Percentage (%)
Aerial Root 1.98
Bulb 0
Endosphere 8.42
Nodule 15.84
Rhizoplane 10.89
Rhizosphere 27.72
Stem 0
Stem Tuber 0
Unclassified 35.15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10025640 3300003187 Bacteria 2395
2 rootH2_10042593 3300003320 Bacteria 1507
3 Ga0055531_10014938 3300003794 Bacteria 3462
4 Ga0058692_1000161 3300003856 Bacteria 41809
5 Ga0070668_100119115 3300005347 Bacteria 2108
6 Ga0070668_100556113 3300005347 Bacteria 999
7 Ga0075364_10058663 3300006051 Bacteria 2523
8 Ga0075364_10158703 3300006051 Bacteria 1526
9 Ga0075369_10069191 3300006186 Bacteria 1552
10 Ga0075369_10098590 3300006186 Bacteria 1309
11 Ga0099826_10000034 3300006948 Bacteria 112568
12 Ga0099826_10006328 3300006948 Bacteria 8614
13 Ga0105243_10109007 3300009148 Bacteria 2312
14 Ga0105249_10025968 3300009553 Bacteria 5275
15 Ga0105249_10107198 3300009553 Bacteria 2637
16 Ga0157373_10076745 3300013100 Bacteria 2358
17 Ga0157371_10002004 3300013102 Bacteria 20138
18 Ga0182008_10017720 3300014497 Bacteria 3691
19 Ga0209025_1000131 3300025294 Bacteria 198190
20 Ga0209025_1001057 3300025294 Bacteria 40170
21 Ga0209025_1007335 3300025294 Bacteria 8254
22 Ga0209025_1057232 3300025294 Bacteria 1492
23 Ga0209257_1005361 3300025304 Bacteria 9059
24 Ga0207709_10022593 3300025935 Bacteria 3569
25 Ga0207712_10192405 3300025961 Bacteria 1611
26 Ga0207668_10088950 3300025972 Bacteria 2263
27 Ga0207668_10351876 3300025972 Bacteria 1232
28 Ga0209371_1000366 3300027312 Bacteria 48730
29 Ga0209371_1021238 3300027312 Bacteria 1579
30 Ga0209282_1000097 3300027666 Bacteria 59941
31 Ga0209282_1014469 3300027666 Bacteria 5022
32 Ga0268256_1000331 3300030500 Bacteria 46221
33 Ga0268256_1023871 3300030500 Bacteria 1579
34 Ga0316181_1016860 3300030744 Bacteria 1840
35 Ga0307405_10017094 3300031731 Bacteria 3972
36 Ga0307414_10779522 3300032004 Bacteria 871
37 Ga0395900_0129494 3300037418 Bacteria 2587
38 Ga0395901_0261000 3300038443 Bacteria 1803
39 Ga0450901_010459 3300042533 Bacteria 960
40 Ga0451576_0157145 3300045051 Bacteria 2372
41 Ga0495627_003248 3300046453 Bacteria 7292
42 Ga0495633_0026985 3300046558 Bacteria 2811
43 Ga0496110_0009096 3300048913 Bacteria 8017
44 Ga0496111_0171545 3300048914 Bacteria 1612
45 Ga0496114_0229767 3300048917 Bacteria 1630
46 Ga0496116_0154342 3300048919 Bacteria 1270
47 Ga0496116_0220027 3300048919 Bacteria 974
48 Ga0496117_0002129 3300048920 Bacteria 25902
49 Ga0496117_0021514 3300048920 Bacteria 5213
50 Ga0496117_0021653 3300048920 Bacteria 5190
51 Ga0496117_0065995 3300048920 Bacteria 2457
52 Ga0496118_0277339 3300048921 Bacteria 935
53 Ga0496119_0002118 3300048922 Bacteria 22340
54 Ga0496119_0023769 3300048922 Bacteria 4334
55 Ga0496120_0014154 3300048923 Bacteria 5325
56 Ga0496120_0055524 3300048923 Bacteria 2239
57 Ga0496120_0108565 3300048923 Bacteria 1453
58 Ga0496121_0000003 3300048924 Bacteria 1191431
59 Ga0496121_0002793 3300048924 Bacteria 25870
60 Ga0496122_0000739 3300048925 Bacteria 63769
61 Ga0496122_0001278 3300048925 Bacteria 41879
62 Ga0496123_0000623 3300048926 Bacteria 59388
63 Ga0496123_0001041 3300048926 Bacteria 41987
64 Ga0496123_0118208 3300048926 Bacteria 1497
65 Ga0496124_0000005 3300048927 Bacteria 922323
66 Ga0496124_0005064 3300048927 Bacteria 15037
67 Ga0496124_0588690 3300048927 Bacteria 726
68 Ga0496125_0000039 3300048928 Bacteria 318665
69 Ga0496125_0000441 3300048928 Bacteria 75923
70 Ga0496125_0001018 3300048928 Bacteria 43593
71 Ga0496125_0003581 3300048928 Bacteria 18696
72 Ga0496125_0016705 3300048928 Bacteria 7037
73 Ga0496125_0077383 3300048928 Bacteria 2564
74 Ga0496125_0234241 3300048928 Bacteria 1171
75 Ga0496125_0237052 3300048928 Bacteria 1161
76 Ga0496125_0392717 3300048928 Bacteria 814
77 Ga0496125_0479424 3300048928 Bacteria 705
78 Ga0496126_0000926 3300048929 Bacteria 50760
79 Ga0496126_0009354 3300048929 Bacteria 10421
80 Ga0496126_0027318 3300048929 Bacteria 5453
81 Ga0496126_0296490 3300048929 Bacteria 1335
82 Ga0501034_0196556 3300049571 Bacteria 1976
83 Ga0501036_0279435 3300049572 Bacteria 1397
84 Ga0501047_0161048 3300049581 Bacteria 2116
85 Ga0501035_0098609 3300049822 Bacteria 2565
86 Ga0501035_0222896 3300049822 Bacteria 1609
87 Ga0501044_0310431 3300049823 Bacteria 1504
88 nmdc:mga00v17_265_c1 3300050491 Bacteria 30890
89 nmdc:mga00v17_55035_c1 3300050491 Bacteria 2429
90 Ga0500568_0000977 3300053139 Bacteria 19696
91 Ga0500568_0070200 3300053139 Bacteria 1342
92 Ga0500624_000015 3300053157 Bacteria 161928
93 Ga0500634_0000063 3300053161 Bacteria 45177

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048919 Ga0496116_0220027 Ga0496116_0220027_85_708 188
2 3300048929 Ga0496126_0027318 Ga0496126_0027318_974_1612 190
3 3300006948 Ga0099826_10006328 Ga0099826_100063284 194
4 3300027666 Ga0209282_1014469 Ga0209282_10144694 194
5 3300048925 Ga0496122_0000739 Ga0496122_0000739_5982_6638 194
6 3300048926 Ga0496123_0000623 Ga0496123_0000623_52751_53407 194
7 3300048927 Ga0496124_0005064 Ga0496124_0005064_5910_6566 194
8 3300048928 Ga0496125_0003581 Ga0496125_0003581_14606_15262 194
9 3300048929 Ga0496126_0000926 Ga0496126_0000926_1390_2046 194
10 3300003320 rootH2_10042593 rootH2_100425931 195
11 3300013100 Ga0157373_10076745 Ga0157373_100767452 195
12 3300027312 Ga0209371_1021238 Ga0209371_10212382 195
13 3300030500 Ga0268256_1023871 Ga0268256_10238713 195
14 3300046558 Ga0495633_0026985 Ga0495633_0026985_340_1020 195
15 3300048920 Ga0496117_0065995 Ga0496117_0065995_1258_1887 196
16 3300048923 Ga0496120_0108565 Ga0496120_0108565_658_1287 196
17 3300048927 Ga0496124_0588690 Ga0496124_0588690_62_691 196
18 3300048929 Ga0496126_0296490 Ga0496126_0296490_170_808 196
19 3300053139 Ga0500568_0070200 Ga0500568_0070200_691_1329 196
20 3300053161 Ga0500634_0000063 Ga0500634_0000063_25206_25847 196
21 3300009553 Ga0105249_10025968 Ga0105249_100259686 198
22 3300045051 Ga0451576_0157145 Ga0451576_0157145_1080_1709 198
23 3300048928 Ga0496125_0479424 Ga0496125_0479424_37_666 198
24 3300049571 Ga0501034_0196556 Ga0501034_0196556_425_1045 199
25 3300006051 Ga0075364_10158703 Ga0075364_101587032 200
26 3300025294 Ga0209025_1007335 Ga0209025_10073359 200
27 3300048928 Ga0496125_0001018 Ga0496125_0001018_28113_28739 200
28 3300049572 Ga0501036_0279435 Ga0501036_0279435_561_1193 200
29 3300049581 Ga0501047_0161048 Ga0501047_0161048_916_1545 200
30 3300049822 Ga0501035_0098609 Ga0501035_0098609_1267_1896 200
31 3300049822 Ga0501035_0222896 Ga0501035_0222896_337_969 200
32 3300031731 Ga0307405_10017094 Ga0307405_100170942 201
33 iso_pu_bacteria 2651869818 2652973410 201
34 iso_pu_bacteria 2919493220 2919495796 201
35 3300003856 Ga0058692_1000161 Ga0058692_100016110 202
36 3300006051 Ga0075364_10058663 Ga0075364_100586632 202
37 3300006186 Ga0075369_10098590 Ga0075369_100985902 202
38 3300027312 Ga0209371_1000366 Ga0209371_100036630 202
39 3300030500 Ga0268256_1000331 Ga0268256_100033129 202
40 3300030744 Ga0316181_1016860 Ga0316181_10168602 202
41 iso_pu_bacteria 2508501114 2509075161 202
42 iso_pu_bacteria 2643221580 2643912969 202
43 iso_pu_bacteria 2643221591 2643962782 203
44 iso_pu_bacteria 2648501241 2649119648 203
45 iso_pu_bacteria 2738541273 2738698501 203
46 iso_pu_bacteria 2738543014 2739252827 203
47 iso_pu_bacteria 2738543017 2739269637 203
48 iso_pu_bacteria 2932401849 2932402437 203
49 iso_pu_bacteria 2939669807 2939674528 203
50 iso_pu_bacteria 2512047030 2512345012 204
51 iso_pu_bacteria 2513237146 2513926501 204
52 iso_pu_bacteria 2523231067 2523468900 204
53 iso_pu_bacteria 2524023250 2524612322 204
54 iso_pu_bacteria 2537561587 2537874920 204
55 iso_pu_bacteria 2565956521 2566036914 204
56 iso_pu_bacteria 2597490356 2599102731 204
57 iso_pu_bacteria 2599185160 2599358033 204
58 iso_pu_bacteria 2599185161 2599361791 204
59 iso_pu_bacteria 2599185162 2599368112 204
60 iso_pu_bacteria 2599185163 2599374901 204
61 iso_pu_bacteria 2599185164 2599383197 204
62 iso_pu_bacteria 2599185165 2599389419 204
63 iso_pu_bacteria 2599185166 2599393759 204
64 iso_pu_bacteria 2599185168 2599405526 204
65 iso_pu_bacteria 2599185170 2599418068 204
66 iso_pu_bacteria 2599185181 2599464848 204
67 iso_pu_bacteria 2599185182 2599468400 204
68 iso_pu_bacteria 2599185186 2599493872 204
69 iso_pu_bacteria 2599185210 2599603936 204
70 iso_pu_bacteria 2599185356 2600217579 204
71 iso_pu_bacteria 2600255279 2601612208 204
72 iso_pu_bacteria 2600255308 2601748379 204
73 iso_pu_bacteria 2600255313 2601777747 204
74 iso_pu_bacteria 2606217733 2608379611 204
75 iso_pu_bacteria 2643221582 2643917915 204
76 iso_pu_bacteria 2643221629 2644167061 204
77 iso_pu_bacteria 2643221662 2644349572 204
78 iso_pu_bacteria 2643221733 2644731655 204
79 iso_pu_bacteria 2667528171 2671098430 204
80 iso_pu_bacteria 2738543031 2739351828 204
81 iso_pu_bacteria 2747842428 2747951306 204
82 iso_pu_bacteria 2751185800 2753358674 204
83 iso_pu_bacteria 2751185877 2753673488 204
84 iso_pu_bacteria 2775506901 2776257229 204
85 iso_pu_bacteria 2818991439 2819557871 204
86 iso_pu_bacteria 2818991464 2819703510 204
87 iso_pu_bacteria 2838035591 2838041005 204
88 iso_pu_bacteria 2838661181 2838666150 204
89 iso_pu_bacteria 2838675328 2838679272 204
90 iso_pu_bacteria 2838714209 2838719118 204
91 iso_pu_bacteria 2838719591 2838724117 204
92 iso_pu_bacteria 2838724970 2838728950 204
93 iso_pu_bacteria 2841760612 2841763449 204
94 iso_pu_bacteria 2841846520 2841850241 204
95 iso_pu_bacteria 2841859092 2841860977 204
96 iso_pu_bacteria 2842124991 2842128713 204
97 iso_pu_bacteria 2842130223 2842134174 204
98 iso_pu_bacteria 2842152218 2842156170 204
99 iso_pu_bacteria 2842170452 2842175364 204
100 iso_pu_bacteria 2842175837 2842179736 204
101 iso_pu_bacteria 2842187318 2842191749 204
102 iso_pu_bacteria 2842211629 2842216066 204
103 iso_pu_bacteria 2842224351 2842228882 204
104 iso_pu_bacteria 2842482326 2842483785 204
105 iso_pu_bacteria 2842515876 2842518756 204
106 iso_pu_bacteria 2844104063 2844109647 204
107 iso_pu_bacteria 2846952575 2846952605 204
108 iso_pu_bacteria 2848858292 2848861095 204
109 iso_pu_bacteria 2851246043 2851251754 204
110 iso_pu_bacteria 2852680915 2852683562 204
111 iso_pu_bacteria 2854681122 2854683215 204
112 iso_pu_bacteria 2882806704 2882808773 204
113 iso_pu_bacteria 2884791551 2884793570 204
114 iso_pu_bacteria 2890737413 2890740142 204
115 iso_pu_bacteria 2891373044 2891373449 204
116 iso_pu_bacteria 2899792073 2899793404 204
117 iso_pu_bacteria 2917070673 2917072873 204
118 iso_pu_bacteria 2919114240 2919117731 204
119 iso_pu_bacteria 2919692658 2919694254 204
120 iso_pu_bacteria 2921643360 2921656302 204
121 iso_pu_bacteria 2923556063 2923562841 204
122 iso_pu_bacteria 2926754445 2926757545 204
123 iso_pu_bacteria 2929138655 2929140889 204
124 iso_pu_bacteria 2933006813 2933010136 204
125 iso_pu_bacteria 2933011516 2933014382 204
126 iso_pu_bacteria 2933594066 2933597027 204
127 iso_pu_bacteria 2935353572 2935359301 204
128 iso_pu_bacteria 2941485952 2941488776 204
129 iso_pu_bacteria 2979100975 2979102912 204
130 iso_pu_bacteria 2984509177 2984509199 204
131 iso_pu_bacteria 2984518228 2984520104 204
132 iso_pu_bacteria 2984537506 2984537528 204
133 iso_pu_bacteria 2984601300 2984604275 204
134 iso_pu_bacteria 2995392953 2995393675 204
135 iso_pu_bacteria 2996336353 2996339829 204
136 iso_pu_bacteria 3000017691 3000018561 204
137 iso_pu_bacteria 3000865235 3000866005 204
138 iso_pu_bacteria 3003233435 3003234757 204
139 iso_pu_bacteria 637000220 637319424 204
140 iso_pu_bacteria 8003570095 8003573561 204
141 iso_pu_bacteria 8005542996 8005543846 204
142 iso_pu_bacteria 8054563764 8054567887 204
143 iso_pu_bacteria 8057101203 8057104924 204
144 3300005347 Ga0070668_100119115 Ga0070668_1001191151 207
145 3300025972 Ga0207668_10088950 Ga0207668_100889501 207
146 3300032004 Ga0307414_10779522 Ga0307414_107795221 207
147 3300046453 Ga0495627_003248 Ga0495627_003248_2840_3466 207
148 3300048913 Ga0496110_0009096 Ga0496110_0009096_5015_5668 207
149 3300048914 Ga0496111_0171545 Ga0496111_0171545_341_964 207
150 3300048919 Ga0496116_0154342 Ga0496116_0154342_570_1193 207
151 3300048927 Ga0496124_0000005 Ga0496124_0000005_379112_379765 207
152 3300048928 Ga0496125_0000441 Ga0496125_0000441_5454_6077 207
153 3300048928 Ga0496125_0392717 Ga0496125_0392717_125_775 207
154 3300048929 Ga0496126_0009354 Ga0496126_0009354_8045_8695 207
155 3300003187 JGI25151J46595_10025640 JGI25151J46595_100256403 208
156 3300003794 Ga0055531_10014938 Ga0055531_100149383 208
157 3300005347 Ga0070668_100556113 Ga0070668_1005561132 208
158 3300006186 Ga0075369_10069191 Ga0075369_100691912 208
159 3300006948 Ga0099826_10000034 Ga0099826_100000346 208
160 3300009148 Ga0105243_10109007 Ga0105243_101090072 208
161 3300009553 Ga0105249_10107198 Ga0105249_101071983 208
162 3300013102 Ga0157371_10002004 Ga0157371_1000200425 208
163 3300014497 Ga0182008_10017720 Ga0182008_100177202 208
164 3300025294 Ga0209025_1000131 Ga0209025_100013173 208
165 3300025294 Ga0209025_1001057 Ga0209025_100105728 208
166 3300025294 Ga0209025_1057232 Ga0209025_10572321 208
167 3300025304 Ga0209257_1005361 Ga0209257_10053615 208
168 3300025935 Ga0207709_10022593 Ga0207709_100225933 208
169 3300025961 Ga0207712_10192405 Ga0207712_101924052 208
170 3300025972 Ga0207668_10351876 Ga0207668_103518761 208
171 3300027666 Ga0209282_1000097 Ga0209282_100009738 208
172 3300037418 Ga0395900_0129494 Ga0395900_0129494_472_1119 208
173 3300038443 Ga0395901_0261000 Ga0395901_0261000_433_1080 208
174 3300042533 Ga0450901_010459 Ga0450901_010459_248_889 208
175 3300048917 Ga0496114_0229767 Ga0496114_0229767_491_1123 208
176 3300048920 Ga0496117_0002129 Ga0496117_0002129_6524_7150 208
177 3300048920 Ga0496117_0021514 Ga0496117_0021514_3544_4263 208
178 3300048920 Ga0496117_0021653 Ga0496117_0021653_2554_3189 208
179 3300048921 Ga0496118_0277339 Ga0496118_0277339_14_649 208
180 3300048922 Ga0496119_0002118 Ga0496119_0002118_15590_16225 208
181 3300048922 Ga0496119_0023769 Ga0496119_0023769_3452_4171 208
182 3300048923 Ga0496120_0014154 Ga0496120_0014154_1526_2245 208
183 3300048923 Ga0496120_0055524 Ga0496120_0055524_382_1017 208
184 3300048924 Ga0496121_0000003 Ga0496121_0000003_410616_411335 208
185 3300048924 Ga0496121_0002793 Ga0496121_0002793_5912_6547 208
186 3300048925 Ga0496122_0001278 Ga0496122_0001278_3501_4127 208
187 3300048926 Ga0496123_0001041 Ga0496123_0001041_3501_4127 208
188 3300048926 Ga0496123_0118208 Ga0496123_0118208_585_1304 208
189 3300048928 Ga0496125_0000039 Ga0496125_0000039_189253_189972 208
190 3300048928 Ga0496125_0016705 Ga0496125_0016705_5041_5670 208
191 3300048928 Ga0496125_0077383 Ga0496125_0077383_562_1197 208
192 3300048928 Ga0496125_0234241 Ga0496125_0234241_85_720 208
193 3300048928 Ga0496125_0237052 Ga0496125_0237052_516_1151 208
194 3300049823 Ga0501044_0310431 Ga0501044_0310431_425_1060 208
195 3300050491 nmdc:mga00v17_265_c1 nmdc:mga00v17_265_c1_13360_14127 208
196 3300050491 nmdc:mga00v17_55035_c1 nmdc:mga00v17_55035_c1_635_1354 208
197 3300053139 Ga0500568_0000977 Ga0500568_0000977_5050_5682 208
198 3300053157 Ga0500624_000015 Ga0500624_000015_86051_86698 208
199 iso_pu_bacteria 2554235341 2555669075 208
200 iso_pu_bacteria 2758568016 2758640913 208
201 iso_pu_bacteria 8019769354 8019772629 208
202 iso_pu_bacteria 8057798959 8057800977 208

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00132

Hexapep

Bacterial transferase hexapeptide (six repeats)

137

172

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
4mzu-assembly2.cif.gz_G crystal structure of fdtd, a bifunctional ketoisomerase/n-acetyltransferase from shewanella denitrificans 0.9825 56 162
6pua-assembly1.cif.gz_A the 2.0 a crystal structure of the type b chloramphenicol acetyltransferase from vibrio cholerae 0.9602 3 206
1xat-assembly1.cif.gz_A structure of the hexapeptide xenobiotic acetyltransferase from pseudomonas aeruginosa 0.9574 3 206
6mfk-assembly1.cif.gz_A crystal structure of chloramphenicol acetyltransferase from elizabethkingia anophelis 0.957 1 206
6mfk-assembly1.cif.gz_A crystal structure of chloramphenicol acetyltransferase from elizabethkingia anophelis 0.9436 1 206
ID Description Score Start End Superfamily
3eevB00 Mainly Beta;3 Solenoid;UDP N-Acetylglucosamine Acyltransferase; domain 1;Hexapeptide repeat proteins 0.9649 3 204 2.160.10.10
3eevB00 Mainly Beta;3 Solenoid;UDP N-Acetylglucosamine Acyltransferase; domain 1;Hexapeptide repeat proteins 0.9466 3 204 2.160.10.10
5ux9B00 Mainly Beta;3 Solenoid;UDP N-Acetylglucosamine Acyltransferase; domain 1;Hexapeptide repeat proteins 0.9014 5 206 2.160.10.10
1fxjB02 Mainly Beta;3 Solenoid;UDP N-Acetylglucosamine Acyltransferase; domain 1;Hexapeptide repeat proteins 0.8971 108 151 2.160.10.10
5ux9B00 Mainly Beta;3 Solenoid;UDP N-Acetylglucosamine Acyltransferase; domain 1;Hexapeptide repeat proteins 0.8722 5 206 2.160.10.10
ID Description Score Start End GO Terms
AF-A0A127T579-F1-model_v4 Chloramphenicol acetyltransferase (EC 2.3.1.28) 0.9807 101 207 GO:0016746
GO:0046677
AF-A0A840T3Q6-F1-model_v4 deleted 0.9692 3 206
AF-A0A2V3UHC6-F1-model_v4 Chloramphenicol acetyltransferase (EC 2.3.1.28) 0.9681 2 207 GO:0016746
GO:0046677
AF-A0A158A222-F1-model_v4 Chloramphenicol acetyltransferase (EC 2.3.1.28) 0.9651 1 204 GO:0016746
GO:0046677
AF-A0A077QE50-F1-model_v4 Chloramphenicol acetyltransferase (EC 2.3.1.28) 0.964 1 206 GO:0008811
GO:0046677

Feature Viewer

pLDDT pTM Quality
91.98 0.87 High
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Predicted Structure (AlphaFold2)

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