F309560

General Info

Members Datasets Scaffolds Average Seq Length
202 164 404 388

Family's Representative Sequence

Representative Sequence 3300005535|Ga0070684_100317459|Ga0070684_1003174591
Length 396
Sequence MTLVFERLDALPQLSAEERQLLESVKALCRDEIAPRAGEYDRSGEFPWANIEAINALGLNAMFLPEAFGGAGLSYAAYLACVREISAACASTGIIWATNFHATKPLIDFGSEVQKERLLPRVAEGAIGALCITEPDAGSDATGMTTRFTPDGDDIVVSGGKTFISNGDVADLYLVFGKWSEIDASPTDKRGRGAISALYIEKGIPGLQVLRKEDKLGHRAASTAALAFENCRVPRGNLLGAPGKGLNLLLAALNKSRPSVAAHALGIARAAFEDAVAYINQRRQSGRRIVEFQGIQFLLADLATDLAMCEAWLWHVAALVDAGVADIGIEASMLKLRASDLAMRIATEAVQLHGGYGYIKEYRVERLLRDAKITQIWEGTNQIHRQLIGRSFIARD

Samples

Sample ID Description Type Environment
1 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
2 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
3 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
4 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
5 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
10 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
13 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
18 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
19 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
20 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
21 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
22 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
23 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
24 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
25 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
26 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
27 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
28 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
29 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
30 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
31 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
32 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
33 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
34 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
35 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
36 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
37 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
38 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
39 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
40 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
45 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
46 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
47 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
48 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
49 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
50 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
51 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
52 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
55 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
56 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
57 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
58 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
59 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
60 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
61 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
62 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
63 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
64 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300027364 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes) (version 2) Metagenome Rhizosphere
92 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
93 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
94 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
96 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
97 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
98 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
99 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
100 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
101 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
102 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
103 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
104 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
105 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
106 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
107 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
108 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
109 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
110 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
111 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
112 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
113 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
114 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
115 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
116 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
117 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
118 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
119 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
120 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
121 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
122 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
123 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
124 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
125 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
126 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
127 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
128 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
129 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
130 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
131 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
132 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
133 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
134 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
135 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
138 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
140 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
141 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
143 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
144 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
145 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
148 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
149 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
150 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
151 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
152 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
153 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
154 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
155 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
156 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
157 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
158 2643221603 Noviherbaspirillum sp. Root189 Isolate Unclassified
159 2738541277 Variovorax sp. GV051 Isolate Unclassified
160 2738543019 Variovorax sp. GV040 Isolate Unclassified
161 2887375801 Parapusillimonas sp. SGNA-6 Isolate Rhizosphere
162 2897803580 Azospirillum doebereinerae GSF71 Isolate Unclassified
163 2900634093 Paraburkholderia dipogonis ICMP 19430 Isolate Unclassified
164 2939631187 Ottowia thiooxydans 2709 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.54
Metatranscriptomes 0.5
Isolates 3.96

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.96
Nodule 0
Rhizoplane 3.47
Rhizosphere 85.15
Stem 0
Stem Tuber 0
Unclassified 0.99

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070684_100317459 3300005535 Bacteria 1431
2 JGI25151J46595_10013370 3300003187 Bacteria 3695
3 Ga0055526_1001091 3300003771 Bacteria 19781
4 Ga0055534_1000434 3300003784 Bacteria 24859
5 Ga0070676_10037581 3300005328 Bacteria 2792
6 Ga0070683_100010694 3300005329 Bacteria 7890
7 Ga0070670_100005071 3300005331 Bacteria 11079
8 Ga0070670_100007175 3300005331 Bacteria 9437
9 Ga0068869_100067814 3300005334 Bacteria 2633
10 Ga0070666_10103784 3300005335 Bacteria 1962
11 Ga0070682_100046694 3300005337 Bacteria 2688
12 Ga0068868_100147621 3300005338 Bacteria 1935
13 Ga0070660_100061509 3300005339 Bacteria 2916
14 Ga0070661_100080143 3300005344 Bacteria 2409
15 Ga0070671_100032341 3300005355 Bacteria 4325
16 Ga0070671_100177375 3300005355 Bacteria 1803
17 Ga0070673_100016395 3300005364 Bacteria 5237
18 Ga0070673_100285876 3300005364 Bacteria 1448
19 Ga0070659_100004888 3300005366 Bacteria 9578
20 Ga0070714_100187922 3300005435 Bacteria 1883
21 Ga0070713_100030449 3300005436 Bacteria 4286
22 Ga0070701_10011450 3300005438 Bacteria 3967
23 Ga0070708_100267400 3300005445 Bacteria 1608
24 Ga0070663_100233377 3300005455 Bacteria 1450
25 Ga0070681_10040072 3300005458 Bacteria 4697
26 Ga0070681_10041636 3300005458 Bacteria 4604
27 Ga0070706_100066248 3300005467 Bacteria 3341
28 Ga0070707_100010216 3300005468 Bacteria 8741
29 Ga0070679_100018673 3300005530 Bacteria 6731
30 Ga0070679_100242179 3300005530 Bacteria 1761
31 Ga0070697_100024363 3300005536 Bacteria 4818
32 Ga0070665_100082007 3300005548 Bacteria 3230
33 Ga0068855_100195522 3300005563 Bacteria 2279
34 Ga0070664_100049950 3300005564 Bacteria 3538
35 Ga0068857_100258096 3300005577 Bacteria 1599
36 Ga0068856_100003156 3300005614 Bacteria 16801
37 Ga0068852_100279659 3300005616 Bacteria 1608
38 Ga0068863_100221984 3300005841 Bacteria 1821
39 Ga0068858_100079248 3300005842 Bacteria 3052
40 Ga0081455_10000076 3300005937 Bacteria 105979
41 Ga0081540_1000008 3300005983 Bacteria 203702
42 Ga0075428_100112690 3300006844 Bacteria 2963
43 Ga0075430_100012694 3300006846 Bacteria 7177
44 Ga0075430_100085610 3300006846 Bacteria 2639
45 Ga0075431_100000057 3300006847 Bacteria 62693
46 Ga0075431_100009236 3300006847 Bacteria 9896
47 Ga0075429_100000754 3300006880 Bacteria 25411
48 Ga0075429_100035908 3300006880 Bacteria 4311
49 Ga0111539_10002564 3300009094 Bacteria 24056
50 Ga0111539_10057362 3300009094 Bacteria 4625
51 Ga0111539_10415330 3300009094 Bacteria 1567
52 Ga0105245_10174305 3300009098 Bacteria 2050
53 Ga0114129_10001100 3300009147 Bacteria 35529
54 Ga0105243_10028379 3300009148 Bacteria 4296
55 Ga0105242_10033880 3300009176 Bacteria 4093
56 Ga0105248_10081546 3300009177 Bacteria 3636
57 Ga0105237_10008531 3300009545 Bacteria 11080
58 Ga0105238_10044181 3300009551 Bacteria 4505
59 Ga0099796_10007291 3300010159 Bacteria 2883
60 Ga0157370_10036004 3300013104 Bacteria 4806
61 Ga0157369_10078710 3300013105 Bacteria 3531
62 Ga0157378_10221792 3300013297 Bacteria 1798
63 Ga0163162_10008575 3300013306 Bacteria 9963
64 Ga0157375_10232448 3300013308 Bacteria 2003
65 Ga0182008_10065964 3300014497 Bacteria 1780
66 Ga0157379_10180024 3300014968 Bacteria 1909
67 Ga0163161_10164096 3300017792 Bacteria 1695
68 Ga0206353_11783164 3300020082 Bacteria 2276
69 Ga0213875_10000556 3300021388 Bacteria 30532
70 Ga0213875_10001219 3300021388 Bacteria 17414
71 Ga0213875_10002791 3300021388 Bacteria 10275
72 Ga0209759_1001559 3300025256 Bacteria 12527
73 Ga0209675_1000090 3300025291 Bacteria 146665
74 Ga0209025_1001275 3300025294 Bacteria 34648
75 Ga0209564_1000985 3300025295 Bacteria 35696
76 Ga0207697_10033705 3300025315 Bacteria 2095
77 Ga0207656_10041320 3300025321 Bacteria 1959
78 Ga0207682_10003988 3300025893 Bacteria 6285
79 Ga0207688_10069247 3300025901 Bacteria 1999
80 Ga0207645_10015403 3300025907 Bacteria 5080
81 Ga0207643_10019858 3300025908 Bacteria 3684
82 Ga0207707_10011400 3300025912 Bacteria 7741
83 Ga0207707_10114852 3300025912 Bacteria 2353
84 Ga0207695_10077741 3300025913 Bacteria 3369
85 Ga0207649_10126019 3300025920 Bacteria 1733
86 Ga0207646_10014589 3300025922 Bacteria 7452
87 Ga0207650_10003147 3300025925 Bacteria 11368
88 Ga0207650_10104491 3300025925 Bacteria 2185
89 Ga0207700_10017472 3300025928 Bacteria 4792
90 Ga0207664_10047247 3300025929 Bacteria 3380
91 Ga0207664_10174211 3300025929 Bacteria 1843
92 Ga0207690_10006207 3300025932 Bacteria 7077
93 Ga0207706_10019061 3300025933 Bacteria 6172
94 Ga0207704_10204992 3300025938 Bacteria 1446
95 Ga0207691_10009265 3300025940 Bacteria 9446
96 Ga0207689_10013309 3300025942 Bacteria 7018
97 Ga0207679_10040574 3300025945 Bacteria 3333
98 Ga0207712_10085059 3300025961 Bacteria 2313
99 Ga0207668_10033386 3300025972 Bacteria 3409
100 Ga0207677_10062278 3300026023 Bacteria 2587
101 Ga0207708_10127740 3300026075 Bacteria 1985
102 Ga0207641_10205152 3300026088 Bacteria 1820
103 Ga0207641_10362987 3300026088 Bacteria 1383
104 Ga0207648_10054188 3300026089 Bacteria 3503
105 Ga0207674_10234493 3300026116 Bacteria 1783
106 Ga0207683_10004517 3300026121 Bacteria 12005
107 Ga0207683_10099743 3300026121 Bacteria 2592
108 Ga0209967_1002197 3300027364 Bacteria 2527
109 Ga0209974_10004620 3300027876 Bacteria 4900
110 Ga0207428_10005221 3300027907 Bacteria 12138
111 Ga0268266_10198813 3300028379 Bacteria 1834
112 Ga0265318_10002631 3300028577 Bacteria 9473
113 Ga0265338_10014578 3300028800 Bacteria 8730
114 Ga0265330_10009111 3300031235 Bacteria 4731
115 Ga0265328_10018396 3300031239 Bacteria 2695
116 Ga0265314_10021718 3300031711 Bacteria 4928
117 Ga0265314_10030292 3300031711 Bacteria 4006
118 Ga0265342_10020689 3300031712 Bacteria 4214
119 Ga0307411_10217985 3300032005 Bacteria 1478
120 Ga0373934_0011346 3300035086 Bacteria 3354
121 Ga0373953_0011030 3300035117 Bacteria 3159
122 Ga0373956_0005342 3300035119 Bacteria 5141
123 Ga0373937_0040238 3300036401 Bacteria 4261
124 Ga0373937_0232441 3300036401 Bacteria 1736
125 Ga0395900_0094582 3300037418 Bacteria 3070
126 Ga0395905_0085866 3300037471 Bacteria 2949
127 Ga0436364_0508608 3300037853 Bacteria 35332
128 Ga0436364_0717863 3300037853 Bacteria 145182
129 Ga0436364_0764620 3300037853 Bacteria 2797
130 Ga0436364_0934865 3300037853 Bacteria 1560
131 Ga0395901_0017014 3300038443 Bacteria 7411
132 Ga0466965_0002246 3300044683 Bacteria 8140
133 Ga0466966_0018709 3300044684 Bacteria 4563
134 Ga0466959_0010594 3300045049 Bacteria 6600
135 Ga0451576_0044438 3300045051 Bacteria 4683
136 Ga0495638_0141199 3300046460 Bacteria 1405
137 Ga0495580_0013065 3300046472 Bacteria 6356
138 Ga0495580_0027163 3300046472 Bacteria 4166
139 Ga0495594_0049794 3300046499 Bacteria 2303
140 Ga0495583_0000255 3300046506 Bacteria 88289
141 Ga0495630_0000342 3300046517 Bacteria 36980
142 Ga0495666_0001023 3300046526 Bacteria 13252
143 Ga0495666_0006515 3300046526 Bacteria 5877
144 Ga0495666_0074413 3300046526 Bacteria 1611
145 Ga0495665_0006665 3300046531 Bacteria 6231
146 Ga0495665_0011019 3300046531 Bacteria 4891
147 Ga0495599_0006749 3300046678 Bacteria 6932
148 Ga0495604_0001617 3300047317 Bacteria 18571
149 Ga0495604_0090482 3300047317 Bacteria 2272
150 Ga0495687_030509 3300047443 Bacteria 2482
151 Ga0495675_0022690 3300047444 Unclassified 4002
152 Ga0495681_0001812 3300047470 Bacteria 15710
153 Ga0495602_0176612 3300048088 Bacteria 1652
154 Ga0496101_0023499 3300048904 Bacteria 4260
155 Ga0496101_0256834 3300048904 Bacteria 1362
156 Ga0496102_0318476 3300048905 Bacteria 1465
157 Ga0496106_0072113 3300048909 Bacteria 2641
158 Ga0496108_0282945 3300048911 Bacteria 1444
159 Ga0496110_0174105 3300048913 Bacteria 1953
160 Ga0496111_0151995 3300048914 Bacteria 1717
161 Ga0496121_0162534 3300048924 Unclassified 1631
162 Ga0495682_0000459 3300049460 Bacteria 28107
163 Ga0501031_0019553 3300049568 Bacteria 4411
164 Ga0501032_0000013 3300049569 Bacteria 185070
165 Ga0501033_0000427 3300049570 Bacteria 40245
166 Ga0501034_0000054 3300049571 Bacteria 206373
167 Ga0501036_0000031 3300049572 Bacteria 92249
168 Ga0501037_0000096 3300049573 Bacteria 81773
169 Ga0501038_0000018 3300049574 Bacteria 155191
170 Ga0501038_0175214 3300049574 Bacteria 1733
171 Ga0501039_0000018 3300049575 Bacteria 176187
172 Ga0501043_0000014 3300049579 Bacteria 184687
173 Ga0501073_0137742 3300049589 Bacteria 1691
174 Ga0501035_0000019 3300049822 Bacteria 241152
175 Ga0501044_0003562 3300049823 Bacteria 17529
176 Ga0501044_0112701 3300049823 Bacteria 2727
177 Ga0501044_0138519 3300049823 Bacteria 2423
178 Ga0501044_0187670 3300049823 Bacteria 2031
179 Ga0501045_0126711 3300049824 Bacteria 1897
180 nmdc:mga05p37_228_c1 3300050507 Bacteria 56943
181 nmdc:mga09592_1367_c1 3300050508 Bacteria 17860
182 nmdc:mga09592_32505_c1 3300050508 Bacteria 4350
183 nmdc:mga0qj67_27873_c1 3300050509 Bacteria 4380
184 nmdc:mga0qj67_80744_c1 3300050509 Bacteria 2606
185 nmdc:mga06r32_145_c1 3300050510 Bacteria 53373
186 nmdc:mga06r32_21726_c1 3300050510 Bacteria 5926
187 nmdc:mga08y16_1363_c1 3300050511 Bacteria 24406
188 nmdc:mga08y16_69813_c1 3300050511 Bacteria 3662
189 Ga0495601_0015948 3300053077 Bacteria 4546
190 Ga0495601_0032418 3300053077 Bacteria 3253
191 Ga0495619_0017350 3300053085 Bacteria 4558
192 Ga0500643_000033 3300053087 Bacteria 189987
193 Ga0500568_0006208 3300053139 Bacteria 6034
194 Ga0501082_0315046 3300060353 Bacteria 1363
195 2644029536 2643221603 Bacteria 6147767
196 2644030877 2643221603 Bacteria 6147767
197 2738723568 2738541277 Bacteria 7458140
198 2739284299 2738543019 Bacteria 7459457
199 2887377483 2887375801 Bacteria 5334027
200 2897808531 2897803580 Bacteria 7000062
201 2900641492 2900634093 Bacteria 10263517
202 2939636777 2939631187 Bacteria 6118131
203 Ga0070684_100317459
204 JGI25151J46595_10013370
205 Ga0055526_1001091
206 Ga0055534_1000434
207 Ga0070676_10037581
208 Ga0070683_100010694
209 Ga0070670_100005071
210 Ga0070670_100007175
211 Ga0068869_100067814
212 Ga0070666_10103784
213 Ga0070682_100046694
214 Ga0068868_100147621
215 Ga0070660_100061509
216 Ga0070661_100080143
217 Ga0070671_100032341
218 Ga0070671_100177375
219 Ga0070673_100016395
220 Ga0070673_100285876
221 Ga0070659_100004888
222 Ga0070714_100187922
223 Ga0070713_100030449
224 Ga0070701_10011450
225 Ga0070708_100267400
226 Ga0070663_100233377
227 Ga0070681_10040072
228 Ga0070681_10041636
229 Ga0070706_100066248
230 Ga0070707_100010216
231 Ga0070679_100018673
232 Ga0070679_100242179
233 Ga0070697_100024363
234 Ga0070665_100082007
235 Ga0068855_100195522
236 Ga0070664_100049950
237 Ga0068857_100258096
238 Ga0068856_100003156
239 Ga0068852_100279659
240 Ga0068863_100221984
241 Ga0068858_100079248
242 Ga0081455_10000076
243 Ga0081540_1000008
244 Ga0075428_100112690
245 Ga0075430_100012694
246 Ga0075430_100085610
247 Ga0075431_100000057
248 Ga0075431_100009236
249 Ga0075429_100000754
250 Ga0075429_100035908
251 Ga0111539_10002564
252 Ga0111539_10057362
253 Ga0111539_10415330
254 Ga0105245_10174305
255 Ga0114129_10001100
256 Ga0105243_10028379
257 Ga0105242_10033880
258 Ga0105248_10081546
259 Ga0105237_10008531
260 Ga0105238_10044181
261 Ga0099796_10007291
262 Ga0157370_10036004
263 Ga0157369_10078710
264 Ga0157378_10221792
265 Ga0163162_10008575
266 Ga0157375_10232448
267 Ga0182008_10065964
268 Ga0157379_10180024
269 Ga0163161_10164096
270 Ga0206353_11783164
271 Ga0213875_10000556
272 Ga0213875_10001219
273 Ga0213875_10002791
274 Ga0209759_1001559
275 Ga0209675_1000090
276 Ga0209025_1001275
277 Ga0209564_1000985
278 Ga0207697_10033705
279 Ga0207656_10041320
280 Ga0207682_10003988
281 Ga0207688_10069247
282 Ga0207645_10015403
283 Ga0207643_10019858
284 Ga0207707_10011400
285 Ga0207707_10114852
286 Ga0207695_10077741
287 Ga0207649_10126019
288 Ga0207646_10014589
289 Ga0207650_10003147
290 Ga0207650_10104491
291 Ga0207700_10017472
292 Ga0207664_10047247
293 Ga0207664_10174211
294 Ga0207690_10006207
295 Ga0207706_10019061
296 Ga0207704_10204992
297 Ga0207691_10009265
298 Ga0207689_10013309
299 Ga0207679_10040574
300 Ga0207712_10085059
301 Ga0207668_10033386
302 Ga0207677_10062278
303 Ga0207708_10127740
304 Ga0207641_10205152
305 Ga0207641_10362987
306 Ga0207648_10054188
307 Ga0207674_10234493
308 Ga0207683_10004517
309 Ga0207683_10099743
310 Ga0209967_1002197
311 Ga0209974_10004620
312 Ga0207428_10005221
313 Ga0268266_10198813
314 Ga0265318_10002631
315 Ga0265338_10014578
316 Ga0265330_10009111
317 Ga0265328_10018396
318 Ga0265314_10021718
319 Ga0265314_10030292
320 Ga0265342_10020689
321 Ga0307411_10217985
322 Ga0373934_0011346
323 Ga0373953_0011030
324 Ga0373956_0005342
325 Ga0373937_0040238
326 Ga0373937_0232441
327 Ga0395900_0094582
328 Ga0395905_0085866
329 Ga0436364_0508608
330 Ga0436364_0717863
331 Ga0436364_0764620
332 Ga0436364_0934865
333 Ga0395901_0017014
334 Ga0466965_0002246
335 Ga0466966_0018709
336 Ga0466959_0010594
337 Ga0451576_0044438
338 Ga0495638_0141199
339 Ga0495580_0013065
340 Ga0495580_0027163
341 Ga0495594_0049794
342 Ga0495583_0000255
343 Ga0495630_0000342
344 Ga0495666_0001023
345 Ga0495666_0006515
346 Ga0495666_0074413
347 Ga0495665_0006665
348 Ga0495665_0011019
349 Ga0495599_0006749
350 Ga0495604_0001617
351 Ga0495604_0090482
352 Ga0495687_030509
353 Ga0495675_0022690
354 Ga0495681_0001812
355 Ga0495602_0176612
356 Ga0496101_0023499
357 Ga0496101_0256834
358 Ga0496102_0318476
359 Ga0496106_0072113
360 Ga0496108_0282945
361 Ga0496110_0174105
362 Ga0496111_0151995
363 Ga0496121_0162534
364 Ga0495682_0000459
365 Ga0501031_0019553
366 Ga0501032_0000013
367 Ga0501033_0000427
368 Ga0501034_0000054
369 Ga0501036_0000031
370 Ga0501037_0000096
371 Ga0501038_0000018
372 Ga0501038_0175214
373 Ga0501039_0000018
374 Ga0501043_0000014
375 Ga0501073_0137742
376 Ga0501035_0000019
377 Ga0501044_0003562
378 Ga0501044_0112701
379 Ga0501044_0138519
380 Ga0501044_0187670
381 Ga0501045_0126711
382 nmdc:mga05p37_228_c1
383 nmdc:mga09592_1367_c1
384 nmdc:mga09592_32505_c1
385 nmdc:mga0qj67_27873_c1
386 nmdc:mga0qj67_80744_c1
387 nmdc:mga06r32_145_c1
388 nmdc:mga06r32_21726_c1
389 nmdc:mga08y16_1363_c1
390 nmdc:mga08y16_69813_c1
391 Ga0495601_0015948
392 Ga0495601_0032418
393 Ga0495619_0017350
394 Ga0500643_000033
395 Ga0500568_0006208
396 Ga0501082_0315046
397 2644029536
398 2644030877
399 2738723568
400 2739284299
401 2887377483
402 2897808531
403 2900641492
404 2939636777

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00441

Acyl-CoA_dh_1

Acyl-CoA dehydrogenase, C-terminal domain

243

393

0.99

PF08028

Acyl-CoA_dh_2

Acyl-CoA dehydrogenase, C-terminal domain

259

382

0.96

PF02771

Acyl-CoA_dh_N

Acyl-CoA dehydrogenase, N-terminal domain

15

126

0.95

PF02770

Acyl-CoA_dh_M

Acyl-CoA dehydrogenase, middle domain

129

231

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
2a1t-assembly1.cif.gz_D structure of the human mcad:etf e165betaa complex 0.9551 14 384
2vig-assembly2.cif.gz_F crystal structure of human short-chain acyl coa dehydrogenase 0.9548 13 384
2jif-assembly1.cif.gz_D structure of human short-branched chain acyl-coa dehydrogenase (acadsb) 0.9545 14 384
2d29-assembly1.cif.gz_A structural study on project id tt0172 from thermus thermophilus hb8 0.9544 14 384
3pfd-assembly5.cif.gz_D crystal structure of an acyl-coa dehydrogenase from mycobacterium thermoresistibile bound to reduced flavin adenine dinucleotide solved by combined iodide ion sad mr 0.9538 17 387
ID Description Score Start End Superfamily
af_Q9D7B6_155_263_2.40.110.10 Mainly Beta;Beta Barrel;Butyryl-CoA Dehydrogenase, subunit A; domain 2;Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.9657 129 238 2.40.110.10
af_Q6NWF0_171_282_2.40.110.10 Mainly Beta;Beta Barrel;Butyryl-CoA Dehydrogenase, subunit A; domain 2;Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.9587 129 238 2.40.110.10
af_A0A0K3AQR2_269_362_1.20.140.10 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.958 246 331 1.20.140.10
af_A4HSY0_160_267_2.40.110.10 Mainly Beta;Beta Barrel;Butyryl-CoA Dehydrogenase, subunit A; domain 2;Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.9575 128 240 2.40.110.10
6fahC02 Mainly Beta;Beta Barrel;Butyryl-CoA Dehydrogenase, subunit A; domain 2;Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.9557 128 240 2.40.110.10
ID Description Score Start End GO Terms
AF-X1PRZ4-F1-model_v4 Acyl-CoA dehydrogenase 0.9683 82 344 GO:0003995
GO:0050660
AF-A0A6N8W020-F1-model_v4 Acyl-CoA dehydrogenase 0.9656 14 301 GO:0003995
GO:0050660
AF-A0A399XYP2-F1-model_v4 deleted 0.9654 13 314
AF-A0A1V4RYH5-F1-model_v4 Acyl-CoA dehydrogenase 0.965 13 327 GO:0003995
GO:0050660
AF-A0A2N0QJJ7-F1-model_v4 Acyl-CoA dehydrogenase NM domain-like protein 0.9643 72 316 GO:0003995
GO:0050660

Map