F309082

General Info

Members Datasets Scaffolds Average Seq Length
201 144 145 482

Family's Representative Sequence

Representative Sequence 3300049744|Ga0501083_0001118|Ga0501083_0001118_14028_15743
Length 571
Sequence VNDRRDPALALLIFWQSFTARSDLSAAFGRARADEIVGAGRHRHGLVSAGVSPWRCSAMSKTSLTRNYLRAQKQLAPSLERGPSDMFPERVVQFGEGNFLRGFTGWMIDELNAKNLFRSHVLVAQPIRQGMAAALNEQDGIYTLLMRGVQNGRVVEARRIITASRRAVNPYDQWSELVAAFRGPDVRFVVSNTTEAGIAYVPEPCAHGVCPETFPAKITSLLHERFLAVRGATDKGLIFLPCELIDRNGDNLRRTVLQHAQAWALPPAFAAWVKNANYFLNTLVDRIVPGYPRAEAEKLAAELGYDDKLMVAAEYFHLWVIEGPRHLAHELPFTQAGLNVVWTDDMTPYRTRKVRVLNGAHTASVLAAHAAGLDTVRDMVEDAVFGRFLRQAVFDEILPCVNLPDEEKRAYAESVLERFRNPFVRHELLSIALNSVSKWKVRVLPSVLDYHAAHGALPPALVFSLAGLIWFYNGETVTANELRGWRGTQAYAIRDDAPVLAFFAEAWNTARRADCWHDLATATLARVDFWGRNLNEIPGFADAVAASLGGIAAHGVRAAVAGVLLKKPAQP

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
3 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
4 2523533629 Kaistella palustris DSM 21579 Isolate Rhizosphere
5 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
6 2565956521 Vibrio rhizosphaerae DSM 18581 Isolate Rhizosphere
7 2585427591 Rahnella aquatilis OV744 Isolate Rhizosphere
8 2585427592 Rahnella aquatilis OV588 Isolate Rhizosphere
9 2600255286 Paenibacillus sp. NFR01 Isolate Rhizoplane
10 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
11 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
12 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
13 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
14 2667528173 Rahnella sp. NFIX50 Isolate Rhizoplane
15 2706794495 Dickeya zeae ZJU1202 Isolate Unclassified
16 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
17 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
18 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
19 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
20 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
21 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
22 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
23 2808606414 Pantoea sp. SJZ147 Isolate Rhizosphere
24 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
25 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
26 2852103415 Edaphovirga cremea DSM 105170 Isolate Rhizosphere
27 2854601825 Dickeya dianthicola SS70 Isolate Stem Tuber
28 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
29 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
30 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
31 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
32 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
33 2904474040 Rahnella aquatilis 4485 Isolate Rhizosphere
34 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
35 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
36 2919150387 Rahnella aceris 1817 Isolate Unclassified
37 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
38 2919509842 Flavobacterium arsenatis 3773 Isolate Unclassified
39 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
40 2923525760 Aeromonas caviae SLBN-129 Isolate Rhizosphere
41 2927143783 Rahnella sp. 2050 Isolate Unclassified
42 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
43 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
44 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
45 2964375228 Anaerobacillus alkaliphilus B16-10 Isolate Rhizosphere
46 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
47 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
48 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
49 2978975091 Pantoea anthophila SORGH_AS 797 Isolate Unclassified
50 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
51 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
52 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
53 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
54 3300002771 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB Metagenome Endosphere
55 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
56 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
57 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
58 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
59 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
60 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
61 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
62 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
63 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
64 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
65 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
66 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
67 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
68 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
69 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
70 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
71 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
72 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
73 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
74 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
75 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
76 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
77 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
78 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
79 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
80 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
81 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
82 3300025207 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
83 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
84 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
85 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
86 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
87 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
88 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
89 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
90 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
91 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
92 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
96 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
97 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
98 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
99 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
100 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
101 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
102 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
103 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
104 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
105 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
106 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
107 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
108 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
109 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
110 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
111 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
112 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
113 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
114 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
115 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
116 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
117 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
118 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
119 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
120 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
121 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
122 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
123 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
124 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
125 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
126 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
127 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
128 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
129 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
130 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
131 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
132 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
133 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
134 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
135 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
136 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
137 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
138 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
139 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
140 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
141 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
142 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
143 8055693939 Hafnia alvei A23BA Isolate Rhizosphere
144 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 71.64
Metatranscriptomes 0.5
Isolates 27.86

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.44
Nodule 2.49
Rhizoplane 1.49
Rhizosphere 55.72
Stem 0
Stem Tuber 0.5
Unclassified 28.36

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_294876 2162886007 Bacteria 9889
2 JGI24739J22299_10000543 3300001989 Bacteria 13459
3 JGI25162J39368_1000031 3300002737 Bacteria 210480
4 JGI25163J39215_1000071 3300002771 Bacteria 45957
5 JGI25164J39214_1000001 3300002772 Bacteria 477015
6 JGI25151J46595_10003897 3300003187 Bacteria 8051
7 Ga0006562J51391_1013616 3300003578 Bacteria 3243
8 Ga0055538_1000004 3300003751 Bacteria 615646
9 Ga0055539_1000004 3300003752 Bacteria 615646
10 Ga0055533_1000007 3300003756 Bacteria 615646
11 Ga0055525_1000007 3300003759 Bacteria 615646
12 Ga0055541_1000004 3300003841 Bacteria 615646
13 Ga0058692_1000363 3300003856 Bacteria 21895
14 Ga0065714_10071302 3300005288 Bacteria 3611
15 Ga0065704_10000063 3300005289 Bacteria 83161
16 Ga0070682_100012309 3300005337 Bacteria 4902
17 Ga0070668_100009448 3300005347 Bacteria 7234
18 Ga0099824_1005584 3300006942 Bacteria 17643
19 Ga0079104_1000119 3300006946 Bacteria 112250
20 Ga0099826_10058833 3300006948 Bacteria 2517
21 Ga0105251_10001197 3300009011 Bacteria 22454
22 Ga0105251_10058018 3300009011 Bacteria 1829
23 Ga0105244_10000022 3300009036 Bacteria 234186
24 Ga0105244_10001164 3300009036 Bacteria 21780
25 Ga0105244_10002281 3300009036 Bacteria 14564
26 Ga0105244_10003229 3300009036 Bacteria 11800
27 Ga0105250_10001495 3300009092 Bacteria 12607
28 Ga0157373_10000008 3300013100 Bacteria 216306
29 Ga0157373_10035200 3300013100 Bacteria 3596
30 Ga0157371_10000159 3300013102 Bacteria 98984
31 Ga0157371_10001807 3300013102 Bacteria 21623
32 Ga0157371_10001855 3300013102 Bacteria 21223
33 Ga0157370_10000341 3300013104 Bacteria 58841
34 Ga0157370_10006277 3300013104 Bacteria 13150
35 Ga0157370_10020779 3300013104 Bacteria 6551
36 Ga0157369_10003319 3300013105 Bacteria 19125
37 Ga0157369_10008135 3300013105 Bacteria 12026
38 Ga0163162_10012328 3300013306 Bacteria 8347
39 Ga0157375_10149229 3300013308 Bacteria 2472
40 Ga0182006_1026520 3300015261 Bacteria 2370
41 Ga0182006_1033548 3300015261 Bacteria 2057
42 Ga0163161_10000056 3300017792 Bacteria 114387
43 Ga0209760_100006 3300025207 Bacteria 224535
44 Ga0209784_100001 3300025224 Bacteria 3600592
45 Ga0209566_100001 3300025225 Bacteria 3600765
46 Ga0209674_100002 3300025226 Bacteria 3600592
47 Ga0209563_100008 3300025230 Bacteria 1554545
48 Ga0207427_100002 3300025231 Bacteria 1355321
49 Ga0209437_100114 3300025233 Bacteria 210697
50 Ga0209677_100004 3300025253 Bacteria 1554545
51 Ga0209676_1000347 3300025292 Bacteria 87634
52 Ga0209025_1011529 3300025294 Bacteria 5808
53 Ga0207696_1000737 3300025711 Bacteria 21893
54 Ga0207655_1000052 3300025728 Bacteria 291090
55 Ga0207655_1000222 3300025728 Bacteria 96831
56 Ga0207713_1006798 3300025735 Bacteria 6900
57 Ga0209281_1000238 3300027111 Bacteria 112268
58 Ga0209371_1000321 3300027312 Bacteria 52619
59 Ga0209489_119148 3300027361 Bacteria 2402
60 Ga0265338_10000030 3300028800 Bacteria 260974
61 Ga0265338_10000062 3300028800 Bacteria 196060
62 Ga0265325_10018363 3300031241 Unclassified 3877
63 Ga0307408_100006383 3300031548 Bacteria 7823
64 Ga0307405_10058595 3300031731 Bacteria 2424
65 Ga0307413_10000614 3300031824 Bacteria 11989
66 Ga0307410_10000577 3300031852 Bacteria 15046
67 Ga0307406_10000075 3300031901 Bacteria 54768
68 Ga0307412_10018953 3300031911 Bacteria 4154
69 Ga0307416_100001293 3300032002 Bacteria 13501
70 Ga0307414_10000002 3300032004 Bacteria 623006
71 Ga0307414_10001619 3300032004 Bacteria 11711
72 Ga0307414_10020392 3300032004 Bacteria 4131
73 Ga0307411_10000006 3300032005 Bacteria 382357
74 Ga0400483_004213 3300039062 Bacteria 16041
75 Ga0400483_126751 3300039062 Bacteria 27006
76 Ga0400483_250454 3300039062 Bacteria 22155
77 Ga0400489_83784 3300039093 Bacteria 8853
78 Ga0439447_011517 3300041407 Bacteria 2574
79 Ga0439466_0000559 3300041411 Bacteria 14012
80 Ga0439452_000009 3300042010 Bacteria 569493
81 Ga0451577_0000090 3300042876 Bacteria 202241
82 Ga0451577_0004605 3300042876 Bacteria 14488
83 Ga0451577_0177461 3300042876 Bacteria 1920
84 Ga0453683_0000005 3300044673 Bacteria 741657
85 Ga0453683_0002252 3300044673 Bacteria 15244
86 Ga0453683_0034635 3300044673 Bacteria 3183
87 Ga0453683_0059733 3300044673 Bacteria 2383
88 Ga0453684_0000322 3300044712 Bacteria 202241
89 Ga0453684_0000469 3300044712 Bacteria 160413
90 Ga0453684_0002121 3300044712 Bacteria 49974
91 Ga0453684_0020034 3300044712 Bacteria 10130
92 Ga0453684_0041239 3300044712 Bacteria 6249
93 Ga0453684_0061353 3300044712 Bacteria 4827
94 Ga0453684_0120145 3300044712 Unclassified 3174
95 Ga0453684_0180612 3300044712 Bacteria 2478
96 Ga0453684_0196981 3300044712 Bacteria 2351
97 Ga0451576_0000614 3300045051 Bacteria 74965
98 Ga0451576_0001114 3300045051 Bacteria 48965
99 Ga0451576_0002031 3300045051 Bacteria 31953
100 Ga0451576_0037052 3300045051 Bacteria 5168
101 Ga0451576_0101465 3300045051 Bacteria 2993
102 Ga0451576_0193941 3300045051 Unclassified 2122
103 Ga0495650_0000004 3300046471 Bacteria 779487
104 Ga0495660_0000022 3300046810 Bacteria 284337
105 Ga0495660_0041344 3300046810 Bacteria 2553
106 Ga0496104_0001477 3300048907 Bacteria 20281
107 Ga0496116_0000004 3300048919 Bacteria 839841
108 Ga0496116_0000016 3300048919 Bacteria 555146
109 Ga0496116_0000203 3300048919 Bacteria 114346
110 Ga0496116_0003884 3300048919 Bacteria 14563
111 Ga0496117_0000258 3300048920 Bacteria 99879
112 Ga0496117_0049268 3300048920 Bacteria 2998
113 Ga0496117_0054852 3300048920 Bacteria 2789
114 Ga0496118_0002671 3300048921 Bacteria 23576
115 Ga0496118_0005295 3300048921 Bacteria 14717
116 Ga0496118_0008937 3300048921 Bacteria 10227
117 Ga0496118_0022230 3300048921 Bacteria 5553
118 Ga0496119_0007769 3300048922 Bacteria 9561
119 Ga0496120_0000552 3300048923 Bacteria 57133
120 Ga0496122_0000070 3300048925 Bacteria 223198
121 Ga0496122_0034823 3300048925 Bacteria 4111
122 Ga0496122_0042522 3300048925 Bacteria 3573
123 Ga0496123_0000131 3300048926 Bacteria 153642
124 Ga0496123_0106705 3300048926 Bacteria 1613
125 Ga0496124_0000335 3300048927 Bacteria 86882
126 Ga0496124_0001544 3300048927 Bacteria 33361
127 Ga0496124_0004474 3300048927 Bacteria 16308
128 Ga0496124_0039729 3300048927 Bacteria 4075
129 Ga0496125_0000056 3300048928 Bacteria 271016
130 Ga0496125_0000082 3300048928 Bacteria 227300
131 Ga0496125_0002266 3300048928 Bacteria 25541
132 Ga0496125_0008160 3300048928 Bacteria 11025
133 Ga0496126_0000137 3300048929 Bacteria 167415
134 Ga0496126_0001202 3300048929 Bacteria 42234
135 Ga0496126_0002887 3300048929 Bacteria 22411
136 Ga0501238_000131 3300049671 Bacteria 11823
137 Ga0501249_000027 3300049679 Bacteria 87387
138 Ga0501083_0001118 3300049744 Bacteria 17960
139 Ga0501083_0011248 3300049744 Bacteria 6278
140 Ga0501266_000008 3300049763 Bacteria 241629
141 Ga0501280_000553 3300049776 Bacteria 8736
142 Ga0500646_0004751 3300053090 Bacteria 3438
143 Ga0500641_0000032 3300053096 Bacteria 82232
144 Ga0500641_0000147 3300053096 Bacteria 25852
145 Ga0500658_0000043 3300053134 Bacteria 73664

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048926 Ga0496123_0106705 Ga0496123_0106705_40_1401 449
2 3300046810 Ga0495660_0041344 Ga0495660_0041344_1182_2537 450
3 3300053096 Ga0500641_0000147 Ga0500641_0000147_16028_17470 459
4 iso_pu_bacteria 2548877040 2550900483 459
5 iso_pu_bacteria 2728368933 2728534546 459
6 iso_pu_bacteria 2907202186 2907204187 459
7 iso_pu_bacteria 2938649242 2938649851 459
8 iso_pu_bacteria 2968558590 2968562827 459
9 iso_pu_bacteria 2971403814 2971408091 459
10 iso_pu_bacteria 2988225383 2988226785 459
11 iso_pu_bacteria 2996632988 2996635696 459
12 iso_pu_bacteria 8054465665 8054469867 459
13 iso_pu_bacteria 2600255286 2601641288 460
14 3300048919 Ga0496116_0003884 Ga0496116_0003884_11681_13099 461
15 3300048922 Ga0496119_0007769 Ga0496119_0007769_2100_3518 461
16 3300048923 Ga0496120_0000552 Ga0496120_0000552_3369_4787 461
17 3300048925 Ga0496122_0034823 Ga0496122_0034823_1360_2778 461
18 3300048925 Ga0496122_0042522 Ga0496122_0042522_429_1847 461
19 3300048927 Ga0496124_0000335 Ga0496124_0000335_21017_22435 461
20 3300048929 Ga0496126_0001202 Ga0496126_0001202_8483_9901 461
21 3300048929 Ga0496126_0002887 Ga0496126_0002887_8277_9695 461
22 3300005288 Ga0065714_10071302 Ga0065714_100713024 462
23 3300009011 Ga0105251_10058018 Ga0105251_100580181 462
24 3300017792 Ga0163161_10000056 Ga0163161_1000005615 465
25 3300009036 Ga0105244_10000022 Ga0105244_1000002293 466
26 3300025728 Ga0207655_1000052 Ga0207655_1000052123 466
27 3300003187 JGI25151J46595_10003897 JGI25151J46595_100038972 467
28 3300025292 Ga0209676_1000347 Ga0209676_100034714 467
29 3300025294 Ga0209025_1011529 Ga0209025_10115292 467
30 3300001989 JGI24739J22299_10000543 JGI24739J22299_100005433 469
31 3300009011 Ga0105251_10001197 Ga0105251_100011978 469
32 3300009036 Ga0105244_10001164 Ga0105244_100011648 469
33 3300013100 Ga0157373_10035200 Ga0157373_100352002 469
34 3300015261 Ga0182006_1033548 Ga0182006_10335482 469
35 3300025735 Ga0207713_1006798 Ga0207713_10067982 469
36 3300032004 Ga0307414_10001619 Ga0307414_100016193 469
37 3300042010 Ga0439452_000009 Ga0439452_000009_433143_434591 469
38 3300048919 Ga0496116_0000203 Ga0496116_0000203_52399_53847 469
39 3300048920 Ga0496117_0000258 Ga0496117_0000258_90625_92073 469
40 3300048921 Ga0496118_0005295 Ga0496118_0005295_4326_5774 469
41 3300048927 Ga0496124_0004474 Ga0496124_0004474_8019_9467 469
42 3300049744 Ga0501083_0011248 Ga0501083_0011248_3309_4754 469
43 3300028800 Ga0265338_10000062 Ga0265338_10000062101 471
44 iso_pu_bacteria 2513020052 2513235749 472
45 iso_pu_bacteria 2643221667 2644372944 472
46 iso_pu_bacteria 2643221725 2644683020 472
47 iso_pu_bacteria 2739367857 2740001802 472
48 iso_pu_bacteria 2739367858 2740006618 472
49 iso_pu_bacteria 2802428842 2802654359 472
50 iso_pu_bacteria 2857618242 2857620865 472
51 iso_pu_bacteria 2881359912 2881360622 472
52 iso_pu_bacteria 2919683626 2919686088 472
53 iso_pu_bacteria 2929150217 2929154055 472
54 iso_pu_bacteria 2958458903 2958463301 472
55 iso_pu_bacteria 2977268062 2977270729 472
56 iso_pu_bacteria 8055419101 8055422329 472
57 iso_pu_bacteria 8056440228 8056441272 472
58 3300042876 Ga0451577_0004605 Ga0451577_0004605_10158_11657 473
59 iso_pu_bacteria 2519899754 2520881574 473
60 iso_pu_bacteria 2565956521 2566035084 473
61 iso_pu_bacteria 2643221600 2644008673 473
62 iso_pu_bacteria 2643221716 2644643045 473
63 iso_pu_bacteria 2738541279 2738736011 473
64 iso_pu_bacteria 2738541285 2738766935 473
65 iso_pu_bacteria 2738543007 2739217646 473
66 iso_pu_bacteria 2816332280 2817416842 473
67 iso_pu_bacteria 2833640130 2833641224 473
68 iso_pu_bacteria 2857613821 2857616645 473
69 iso_pu_bacteria 2903895155 2903899356 473
70 iso_pu_bacteria 2904419702 2904421514 473
71 iso_pu_bacteria 2904555929 2904559446 473
72 iso_pu_bacteria 2919191525 2919195048 473
73 iso_pu_bacteria 8054307821 8054311303 473
74 3300027312 Ga0209371_1000321 Ga0209371_10003212 474
75 3300006946 Ga0079104_1000119 Ga0079104_1000119100 476
76 3300013100 Ga0157373_10000008 Ga0157373_100000085 476
77 3300013104 Ga0157370_10020779 Ga0157370_100207794 476
78 3300015261 Ga0182006_1026520 Ga0182006_10265202 476
79 3300027111 Ga0209281_1000238 Ga0209281_100023810 476
80 3300031824 Ga0307413_10000614 Ga0307413_100006142 476
81 3300032004 Ga0307414_10020392 Ga0307414_100203922 476
82 3300032005 Ga0307411_10000006 Ga0307411_1000000696 476
83 3300041407 Ga0439447_011517 Ga0439447_011517_289_1731 476
84 3300045051 Ga0451576_0193941 Ga0451576_0193941_85_1518 476
85 3300049679 Ga0501249_000027 Ga0501249_000027_77457_78899 476
86 3300049763 Ga0501266_000008 Ga0501266_000008_96574_98016 476
87 3300053090 Ga0500646_0004751 Ga0500646_0004751_1139_2581 476
88 3300053096 Ga0500641_0000032 Ga0500641_0000032_13840_15282 476
89 3300053134 Ga0500658_0000043 Ga0500658_0000043_43945_45387 476
90 iso_pu_bacteria 8055592153 8055594275 476
91 3300003578 Ga0006562J51391_1013616 Ga0006562J51391_10136161 477
92 3300005337 Ga0070682_100012309 Ga0070682_1000123091 477
93 3300006942 Ga0099824_1005584 Ga0099824_10055843 477
94 3300006948 Ga0099826_10058833 Ga0099826_100588332 477
95 3300013102 Ga0157371_10001855 Ga0157371_100018557 477
96 3300013104 Ga0157370_10000341 Ga0157370_100003412 477
97 3300013104 Ga0157370_10006277 Ga0157370_100062774 477
98 3300013105 Ga0157369_10003319 Ga0157369_100033192 477
99 3300013308 Ga0157375_10149229 Ga0157375_101492293 477
100 3300027361 Ga0209489_119148 Ga0209489_1191482 477
101 3300031548 Ga0307408_100006383 Ga0307408_1000063834 477
102 3300031731 Ga0307405_10058595 Ga0307405_100585952 477
103 3300031852 Ga0307410_10000577 Ga0307410_100005778 477
104 3300031901 Ga0307406_10000075 Ga0307406_1000007544 477
105 3300031911 Ga0307412_10018953 Ga0307412_100189533 477
106 3300032002 Ga0307416_100001293 Ga0307416_1000012932 477
107 3300032004 Ga0307414_10000002 Ga0307414_10000002263 477
108 3300041411 Ga0439466_0000559 Ga0439466_0000559_2851_4293 477
109 3300048919 Ga0496116_0000004 Ga0496116_0000004_817541_818989 477
110 3300048920 Ga0496117_0054852 Ga0496117_0054852_280_1728 477
111 3300048921 Ga0496118_0022230 Ga0496118_0022230_2707_4155 477
112 3300048927 Ga0496124_0039729 Ga0496124_0039729_61_1509 477
113 3300048928 Ga0496125_0000082 Ga0496125_0000082_204805_206253 477
114 3300049671 Ga0501238_000131 Ga0501238_000131_2764_4206 477
115 3300049776 Ga0501280_000553 Ga0501280_000553_5800_7242 477
116 iso_pu_bacteria 2523533629 2524005843 477
117 iso_pu_bacteria 2919509842 2919513407 477
118 iso_pu_bacteria 2808606414 2809127176 478
119 iso_pu_bacteria 2585427591 2585826332 479
120 iso_pu_bacteria 2585427592 2585830634 479
121 iso_pu_bacteria 2667528173 2671106625 479
122 iso_pu_bacteria 2706794495 2707101197 479
123 iso_pu_bacteria 2852103415 2852106102 479
124 iso_pu_bacteria 2854601825 2854605226 479
125 iso_pu_bacteria 2904474040 2904474225 479
126 iso_pu_bacteria 2919150387 2919150572 479
127 iso_pu_bacteria 2923525760 2923527707 479
128 iso_pu_bacteria 2927143783 2927145445 479
129 iso_pu_bacteria 2978975091 2978978067 479
130 iso_pu_bacteria 8055693939 8055694596 479
131 3300028800 Ga0265338_10000030 Ga0265338_10000030179 481
132 3300031241 Ga0265325_10018363 Ga0265325_100183633 481
133 3300039093 Ga0400489_83784 Ga0400489_83784_6162_7700 481
134 3300042876 Ga0451577_0000090 Ga0451577_0000090_193546_195024 481
135 3300042876 Ga0451577_0177461 Ga0451577_0177461_80_1558 481
136 3300044673 Ga0453683_0000005 Ga0453683_0000005_515598_517076 481
137 3300044673 Ga0453683_0002252 Ga0453683_0002252_7190_8668 481
138 3300044673 Ga0453683_0034635 Ga0453683_0034635_624_2102 481
139 3300044673 Ga0453683_0059733 Ga0453683_0059733_175_1653 481
140 3300044712 Ga0453684_0000322 Ga0453684_0000322_193546_195024 481
141 3300044712 Ga0453684_0000469 Ga0453684_0000469_18975_20453 481
142 3300044712 Ga0453684_0002121 Ga0453684_0002121_9223_10701 481
143 3300044712 Ga0453684_0020034 Ga0453684_0020034_7287_8759 481
144 3300044712 Ga0453684_0041239 Ga0453684_0041239_3560_5089 481
145 3300044712 Ga0453684_0061353 Ga0453684_0061353_400_1878 481
146 3300044712 Ga0453684_0120145 Ga0453684_0120145_331_1803 481
147 3300044712 Ga0453684_0180612 Ga0453684_0180612_764_2302 481
148 3300045051 Ga0451576_0000614 Ga0451576_0000614_54515_55993 481
149 3300045051 Ga0451576_0001114 Ga0451576_0001114_7218_8696 481
150 3300045051 Ga0451576_0037052 Ga0451576_0037052_238_1716 481
151 3300045051 Ga0451576_0101465 Ga0451576_0101465_951_2420 481
152 3300049744 Ga0501083_0001118 Ga0501083_0001118_14028_15743 481
153 iso_pu_bacteria 2964375228 2964376078 481
154 3300003856 Ga0058692_1000363 Ga0058692_100036317 482
155 3300005347 Ga0070668_100009448 Ga0070668_1000094482 482
156 3300009036 Ga0105244_10003229 Ga0105244_100032294 482
157 3300013102 Ga0157371_10001807 Ga0157371_1000180710 482
158 3300013105 Ga0157369_10008135 Ga0157369_1000813513 482
159 3300044712 Ga0453684_0196981 Ga0453684_0196981_692_2218 482
160 3300045051 Ga0451576_0002031 Ga0451576_0002031_936_2462 482
161 3300048928 Ga0496125_0002266 Ga0496125_0002266_17544_19067 482
162 3300048928 Ga0496125_0008160 Ga0496125_0008160_2630_4153 482
163 2162886007 SwRhRL2b_contig_294876 SwRhRL2b_0278.00005480 483
164 3300002737 JGI25162J39368_1000031 JGI25162J39368_1000031186 483
165 3300002771 JGI25163J39215_1000071 JGI25163J39215_100007116 483
166 3300002772 JGI25164J39214_1000001 JGI25164J39214_100000156 483
167 3300003751 Ga0055538_1000004 Ga0055538_1000004186 483
168 3300003752 Ga0055539_1000004 Ga0055539_1000004371 483
169 3300003756 Ga0055533_1000007 Ga0055533_1000007186 483
170 3300003759 Ga0055525_1000007 Ga0055525_1000007186 483
171 3300003841 Ga0055541_1000004 Ga0055541_1000004186 483
172 3300005289 Ga0065704_10000063 Ga0065704_1000006344 483
173 3300009036 Ga0105244_10002281 Ga0105244_1000228111 483
174 3300009092 Ga0105250_10001495 Ga0105250_100014953 483
175 3300013102 Ga0157371_10000159 Ga0157371_1000015927 483
176 3300013306 Ga0163162_10012328 Ga0163162_100123286 483
177 3300025207 Ga0209760_100006 Ga0209760_10000699 483
178 3300025224 Ga0209784_100001 Ga0209784_100001182 483
179 3300025225 Ga0209566_100001 Ga0209566_100001182 483
180 3300025226 Ga0209674_100002 Ga0209674_100002182 483
181 3300025230 Ga0209563_100008 Ga0209563_100008184 483
182 3300025231 Ga0207427_100002 Ga0207427_1000021096 483
183 3300025233 Ga0209437_100114 Ga0209437_10011416 483
184 3300025253 Ga0209677_100004 Ga0209677_100004184 483
185 3300025711 Ga0207696_1000737 Ga0207696_10007374 483
186 3300025728 Ga0207655_1000222 Ga0207655_100022253 483
187 3300039062 Ga0400483_004213 Ga0400483_004213_1229_2695 483
188 3300039062 Ga0400483_126751 Ga0400483_126751_4170_5630 483
189 3300039062 Ga0400483_250454 Ga0400483_250454_12300_13766 483
190 3300046471 Ga0495650_0000004 Ga0495650_0000004_205252_206703 483
191 3300046810 Ga0495660_0000022 Ga0495660_0000022_204635_206086 483
192 3300048907 Ga0496104_0001477 Ga0496104_0001477_11967_13418 483
193 3300048919 Ga0496116_0000016 Ga0496116_0000016_81449_82900 483
194 3300048920 Ga0496117_0049268 Ga0496117_0049268_587_2038 483
195 3300048921 Ga0496118_0002671 Ga0496118_0002671_13572_15023 483
196 3300048921 Ga0496118_0008937 Ga0496118_0008937_6475_7926 483
197 3300048925 Ga0496122_0000070 Ga0496122_0000070_151026_152477 483
198 3300048926 Ga0496123_0000131 Ga0496123_0000131_81470_82921 483
199 3300048927 Ga0496124_0001544 Ga0496124_0001544_20501_21952 483
200 3300048928 Ga0496125_0000056 Ga0496125_0000056_64924_66375 483
201 3300048929 Ga0496126_0000137 Ga0496126_0000137_56530_57981 483

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01232

Mannitol_dh

Mannitol dehydrogenase Rossmann domain

89

335

0.86

PF08125

Mannitol_dh_C

Mannitol dehydrogenase C-terminal domain

345

552

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
7rk5-assembly2.cif.gz_A mannitol-2-dehydrogenase bound to nadh from aspergillus fumigatus 0.8645 11 482
7rk4-assembly1.cif.gz_A mannitol-2-dehydrogenase from aspergillus fumigatus 0.8478 11 482
5itg-assembly2.cif.gz_B crystal structure of d-sorbitol dehydrogenase in substrate-free form 0.8335 13 479
7rk4-assembly1.cif.gz_A mannitol-2-dehydrogenase from aspergillus fumigatus 0.8262 11 482
7rk5-assembly2.cif.gz_A mannitol-2-dehydrogenase bound to nadh from aspergillus fumigatus 0.822 11 482
ID Description Score Start End Superfamily
af_P0A6L7_272_481_1.10.1040.10 Mainly Alpha;Orthogonal Bundle;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.9996 272 479 1.10.1040.10
af_P0A6L7_2_268_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9874 2 267 3.40.50.720
af_P0A6L7_272_481_1.10.1040.10 Mainly Alpha;Orthogonal Bundle;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.9854 272 479 1.10.1040.10
af_P0A6L7_2_268_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.98 2 267 3.40.50.720
af_P39160_282_486_1.10.1040.10 Mainly Alpha;Orthogonal Bundle;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.9165 273 481 1.10.1040.10
ID Description Score Start End GO Terms
AF-A0A0A3YLD9-F1-model_v4 deleted 0.9974 283 454
AF-A0A484X6M8-F1-model_v4 Altronate oxidoreductase (EC 1.1.1.58) 0.9956 271 383 GO:0005829
GO:0008926
GO:0009026
GO:0019592
GO:0019698
AF-A0A3D4XA28-F1-model_v4 Tagaturonate reductase (EC 1.1.1.58) 0.9952 284 375 GO:0005829
GO:0008926
GO:0009026
GO:0019592
GO:0019698
AF-A0A6L7A0U9-F1-model_v4 Mannitol dehydrogenase C-terminal domain-containing protein 0.9939 290 483 GO:0005829
GO:0008926
GO:0009026
GO:0019592
GO:0019698
AF-A0A2N4YRY6-F1-model_v4 Altronate oxidoreductase (EC 1.1.1.58) 0.9914 356 481 GO:0005829
GO:0008926
GO:0009026
GO:0019592
GO:0019698

Feature Viewer

pLDDT pTM Quality
92.58 0.84 High
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Predicted Structure (AlphaFold2)

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