F308793

General Info

Members Datasets Scaffolds Average Seq Length
201 155 399 396

Family's Representative Sequence

Representative Sequence 3300038705|Ga0237819_00297|Ga0237819_00297_1585_2922
Length 438
Sequence MIVKMIPNTAQFLWYIPTLNRNHYDLSLIFSFLSIIIKERNYFMKKVPITVLSGFLGAGKTTLLHHILTNKNNLKVAVIVNDISEVNIDASLIKKGGFSRTEEKLVEIQNGCICCTLREDLMIEVNRLVENGDIDYIVIESSGISEPIPVAQTFTYTDEVLNIDLTKNCHLDTMVTVVDAHRFWDDFADGESLLDRKQAIDETDTREVIDLLIDQIEFANVIILNKIDLLEKEDVIELHHLLKKLNPSAKVIESSFSKVPLQEVLNTNSFNYEEASQSAGWMQELNSDHHTPETEEYGIHSFVYRRKYPFHPERLMNWLEKWPLDVVRAKGFFWLASRNTMIGLLSQAGSSITIQGAGEWIAALPEAEKNQIITEEPEVLKNWDEQYGDRITELVFIGIDMDHFLIEQSLDSCLLTEKEMKQDWNSFVDPIPAFTYTS

Samples

Sample ID Description Type Environment
1 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
4 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
8 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
9 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
10 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
11 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
12 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
13 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
14 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
15 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
16 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
17 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
18 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
19 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
20 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
21 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
22 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
23 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
24 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
25 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
26 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
27 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
28 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
33 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
34 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
35 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
36 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
37 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
38 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
39 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
40 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
41 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
42 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
43 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
44 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
45 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
46 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
47 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
48 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
49 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
50 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
51 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
52 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
53 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
54 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
55 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
56 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
57 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
58 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
59 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
60 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
61 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
62 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
63 2551306519 Bacillus sp. WBUNB004 Isolate Rhizosphere
64 2593339131 Bacillus sp. UNCCL81 Isolate Unclassified
65 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
66 2599185353 Staphylococcus sp. NFPP34 Isolate Rhizoplane
67 2600254943 Staphylococcus pasteuri NFIX07 Isolate Rhizoplane
68 2643221729 Bacillus sp. Root11 Isolate Unclassified
69 2643221730 Bacillus sp. Root131 Isolate Unclassified
70 2643221731 Bacillus sp. Root147 Isolate Unclassified
71 2643221732 Bacillus sp. Root239 Isolate Unclassified
72 2671180330 Peribacillus simplex SH-B26 Isolate Unclassified
73 2671180694 Paenibacillus sp. A3 Isolate Unclassified
74 2684622632 Bacillus cereus 905 Isolate Unclassified
75 2695420987 Bacillus thuringiensis KNU-07 Isolate Unclassified
76 2718218445 Bacillus sp. B25(2016b) Isolate Rhizosphere
77 2721755693 Paenibacillus polymyxa YC0573 Isolate Rhizosphere
78 2728369359 Paenibacillus polymyxa YC0136 Isolate Rhizosphere
79 2738543010 Bacillus sp. YR335 Isolate Unclassified
80 2757320391 Bacillus sp. NFR08 Isolate Rhizoplane
81 2802428803 Paenibacillus peoriae NMA1017 Isolate Rhizosphere
82 2808606364 Bacillus sp. SLBN-3 Isolate Unclassified
83 2816332186 Peribacillus frigoritolerans 3612 Isolate Unclassified
84 2816332295 Bacillus paralicheniformis MDJK30 Isolate Rhizosphere
85 2816332336 Brevibacillus laterosporus ZQ2 Isolate Unclassified
86 2818991441 Niallia circulans 3243 Isolate Rhizosphere
87 2818991443 Bacillus thuringiensis 1230 Isolate Unclassified
88 2818991465 Priestia megaterium 3291 Isolate Rhizosphere
89 2821111986 Paenibacillus illinoisensis 582 Isolate Unclassified
90 2842682962 Bacillus sp. R-72492 Isolate Unclassified
91 2842882022 Bacillus sp. R-71893 Isolate Unclassified
92 2849139964 Bacillus sp. R-71875 Isolate Unclassified
93 2857460504 Brevibacillus sp. R-74223 Isolate Unclassified
94 2857581216 Bacillus sp. R-71922 Isolate Unclassified
95 2857586860 Bacillus sp. R-71935 Isolate Unclassified
96 2857591370 Brevibacillus sp. R-71934 Isolate Unclassified
97 2857604169 Domibacillus sp. R-71921 Isolate Unclassified
98 2857609550 Domibacillus sp. R-71929 Isolate Unclassified
99 2864733723 Paenibacillus sp. JGP012 Isolate Rhizosphere
100 2864997549 Paenibacillus sp. R-72005 Isolate Unclassified
101 2881644220 Siminovitchia terrae LMG 29736 Isolate Rhizosphere
102 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
103 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
104 2889276214 Paenibacillus sp. PvR133 Isolate Rhizosphere
105 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
106 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
107 2904524088 Priestia megaterium 1428 Isolate Rhizosphere
108 2904595352 Paenibacillus sp. 1182 Isolate Unclassified
109 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
110 2915606848 Brevibacillus sp. HD1.4A Isolate Rhizosphere
111 2919143609 Priestia megaterium 1751 Isolate Rhizosphere
112 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
113 2919414237 Neobacillus niacini 3240 Isolate Rhizosphere
114 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
115 2919517244 Priestia aryabhattai 3820 Isolate Unclassified
116 2919720352 Priestia megaterium 4340 Isolate Unclassified
117 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
118 2928093941 Priestia aryabhattai 1389 Isolate Rhizosphere
119 2928510474 Sporosarcina psychrophila 1288 Isolate Rhizosphere
120 2929004312 Priestia megaterium 1104 Isolate Unclassified
121 2929233124 Bacillus sp. R-74298 Hybrid assembly Isolate Unclassified
122 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
123 2936340661 Gottfriedia acidiceleris 1-17 Isolate Rhizosphere
124 2938917290 Bacillus sp. CR71 Isolate Unclassified
125 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
126 2947426588 Bacillus sp. RZ2MS9 Isolate Rhizosphere
127 2956897341 Ectobacillus funiculus W18-2 Isolate Rhizosphere
128 2960319331 Priestia megaterium AFS057444 Isolate Unclassified
129 2960375949 Priestia megaterium AFS067084 Isolate Unclassified
130 2964375228 Anaerobacillus alkaliphilus B16-10 Isolate Rhizosphere
131 2965761152 Bacillus sp. COPE52 Isolate Unclassified
132 2979083700 Bacillus toyonensis SORGH_AS 407 Isolate Unclassified
133 2980125574 Paenibacillus sp. tmac-D7 Isolate Unclassified
134 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
135 2984527788 Paenibacillus sp. SORGH_AS306 Isolate Aerial Root
136 2984532647 Paenibacillus sp. SORGH_AS338 Isolate Aerial Root
137 3001267043 Bacillus sp. FJAT-49870 Isolate Rhizosphere
138 3001272096 Lederbergia citrisecunda FJAT-49732 Isolate Rhizosphere
139 3006858327 Bacillus paralicheniformis SUBG0010 Isolate Unclassified
140 3006879489 Bacillus atrophaeus UCMB-5137 Isolate Rhizosphere
141 3006969106 Bacillus sp. FJAT-50079 Isolate Rhizosphere
142 3006973921 Bacillus sp. FJAT-49736 Isolate Rhizosphere
143 3006984091 Lederbergia citrea FJAT-49754 Isolate Rhizosphere
144 3006988479 Bacillus sp. FJAT-49711 Isolate Rhizosphere
145 648028048 Paenibacillus polymyxa E681 Isolate Rhizosphere
146 8022621104 Bacillus sp. PIC28 Isolate Rhizosphere
147 8022792930 Bacillus sp. Xin Isolate Rhizosphere
148 8022893055 Bacillus aryabhattai AFS007213 Isolate Unclassified
149 8022914991 Bacillus aryabhattai SQU-R12 Isolate Unclassified
150 8022948649 Bacillus endophyticus FH5 Isolate Rhizosphere
151 8023438354 Bacillus sp. BH2 Isolate Unclassified
152 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
153 8057582654 Bacillus arachidis YX15 Isolate Rhizosphere
154 8057733483 Paenibacillus apiarius MW-14 Isolate Rhizosphere
155 8057977335 Paenibacillus oenotherae DT7-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 50.75
Metatranscriptomes 0.5
Isolates 48.76

Biome Distribution

Category Percentage (%)
Aerial Root 1
Bulb 0
Endosphere 11.94
Nodule 0.5
Rhizoplane 11.44
Rhizosphere 41.29
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0237819_00297 3300038705 Bacteria 18325
2 SwRhRL2b_contig_1691626 2162886007 Eukaryota 106711
3 JGI25151J46595_10001681 3300003187 Bacteria 14493
4 JGI25151J46595_10003661 3300003187 Bacteria 8373
5 JGI25151J46595_10016225 3300003187 Bacteria 3262
6 JGI25151J46595_10021496 3300003187 Bacteria 2699
7 rootH1_10000644 3300003316 Bacteria 71850
8 rootH1_10000644 3300003323 Bacteria 3522
9 rootL2_10013974 3300003322 Bacteria 148551
10 rootH1_10364009 3300003323 Bacteria 4424
11 Ga0006562J51391_1000814 3300003578 Bacteria 2410
12 Ga0055532_1000030 3300003758 Bacteria 232738
13 Ga0055532_1000038 3300003758 Bacteria 198387
14 Ga0055532_1002615 3300003758 Bacteria 3576
15 Ga0065704_10000198 3300005289 Eukaryota 240763
16 Ga0065707_10081746 3300005295 Eukaryota 51644
17 Ga0070670_100067378 3300005331 Bacteria 3072
18 Ga0105251_10015300 3300009011 Bacteria 4201
19 Ga0105251_10019916 3300009011 Bacteria 3532
20 Ga0105244_10000887 3300009036 Bacteria 25375
21 Ga0105244_10012885 3300009036 Bacteria 4922
22 Ga0105244_10036070 3300009036 Bacteria 2593
23 Ga0105244_10047000 3300009036 Bacteria 2215
24 Ga0105250_10000681 3300009092 Bacteria 21336
25 Ga0105250_10011833 3300009092 Bacteria 3617
26 Ga0105250_10042288 3300009092 Bacteria 1826
27 Ga0105245_10063322 3300009098 Bacteria 3339
28 Ga0105247_10014085 3300009101 Bacteria 4797
29 Ga0105243_10000834 3300009148 Bacteria 29280
30 Ga0105239_10315285 3300010375 Bacteria 1763
31 Ga0157374_10132135 3300013296 Bacteria 2416
32 Ga0157372_10627676 3300013307 Bacteria 1252
33 Ga0209147_100065 3300025229 Bacteria 232777
34 Ga0209147_100081 3300025229 Bacteria 195314
35 Ga0209147_100312 3300025229 Bacteria 37771
36 Ga0209147_105754 3300025229 Bacteria 1808
37 Ga0209673_1003601 3300025273 Bacteria 8995
38 Ga0209130_1001330 3300025284 Bacteria 16792
39 Ga0209675_1011145 3300025291 Bacteria 3001
40 Ga0209676_1000245 3300025292 Bacteria 116643
41 Ga0209025_1000164 3300025294 Bacteria 165351
42 Ga0209025_1000965 3300025294 Bacteria 43341
43 Ga0209025_1002449 3300025294 Bacteria 19620
44 Ga0209025_1003052 3300025294 Bacteria 16484
45 Ga0209025_1006201 3300025294 Bacteria 9384
46 Ga0209025_1041682 3300025294 Bacteria 1962
47 Ga0207426_1003797 3300025302 Bacteria 7838
48 Ga0207696_1000894 3300025711 Bacteria 18496
49 Ga0207696_1001916 3300025711 Bacteria 10585
50 Ga0207696_1018477 3300025711 Bacteria 2288
51 Ga0207655_1027331 3300025728 Bacteria 2719
52 Ga0207655_1030370 3300025728 Bacteria 2514
53 Ga0207655_1030374 3300025728 Bacteria 2514
54 Ga0207713_1003036 3300025735 Bacteria 11702
55 Ga0207713_1029977 3300025735 Bacteria 2427
56 Ga0207713_1043991 3300025735 Bacteria 1840
57 Ga0207713_1043995 3300025735 Bacteria 1840
58 Ga0207691_10078963 3300025940 Bacteria 2962
59 Ga0307408_100112321 3300031548 Bacteria 2095
60 Ga0237819_00070 3300038705 Bacteria 37316
61 Ga0439449_0004129 3300042007 Bacteria 5617
62 Ga0466959_0012570 3300045049 Bacteria 6122
63 Ga0466967_0000208 3300045976 Bacteria 24750
64 Ga0495584_0068968 3300046491 Bacteria 1776
65 Ga0495585_0008512 3300046492 Bacteria 6215
66 Ga0495683_0025188 3300047323 Bacteria 3051
67 Ga0496100_0000519 3300048903 Bacteria 18430
68 Ga0496101_0059292 3300048904 Bacteria 2773
69 Ga0496101_0258005 3300048904 Bacteria 1359
70 Ga0496102_0001666 3300048905 Bacteria 19511
71 Ga0496102_0028970 3300048905 Bacteria 4950
72 Ga0496102_0040604 3300048905 Bacteria 4209
73 Ga0496103_0001204 3300048906 Bacteria 17760
74 Ga0496103_0099422 3300048906 Bacteria 1840
75 Ga0496104_0000832 3300048907 Bacteria 26638
76 Ga0496105_0000067 3300048908 Bacteria 82959
77 Ga0496106_0002301 3300048909 Bacteria 14244
78 Ga0496107_0000724 3300048910 Bacteria 18866
79 Ga0496109_0000906 3300048912 Bacteria 24668
80 Ga0496110_0007498 3300048913 Bacteria 8717
81 Ga0496110_0009002 3300048913 Bacteria 8053
82 Ga0496110_0052820 3300048913 Bacteria 3571
83 Ga0496111_0014822 3300048914 Bacteria 5335
84 Ga0496112_0039582 3300048915 Bacteria 4607
85 Ga0496113_0021465 3300048916 Bacteria 4555
86 Ga0496113_0145808 3300048916 Bacteria 1865
87 Ga0496117_0035393 3300048920 Bacteria 3748
88 Ga0496119_0000670 3300048922 Bacteria 45979
89 Ga0496120_0024343 3300048923 Bacteria 3777
90 Ga0496121_0000011 3300048924 Bacteria 792193
91 Ga0496121_0102676 3300048924 Bacteria 2202
92 Ga0496121_0103749 3300048924 Bacteria 2186
93 Ga0496122_0018841 3300048925 Bacteria 6344
94 Ga0496122_0051171 3300048925 Bacteria 3142
95 Ga0496123_0055376 3300048926 Bacteria 2603
96 Ga0496123_0116980 3300048926 Bacteria 1509
97 Ga0496125_0001844 3300048928 Bacteria 29235
98 Ga0496125_0023992 3300048928 Bacteria 5619
99 Ga0496125_0027894 3300048928 Bacteria 5109
100 Ga0496126_0003336 3300048929 Bacteria 20405
101 Ga0496126_0032765 3300048929 Bacteria 4892
102 Ga0501217_000310 3300049661 Bacteria 7749
103 2512731311 2512564039 Bacteria 8739048
104 2524187640 2524023129 Bacteria 6762600
105 2553394976 2551306519 Bacteria 5465154
106 2595089431 2593339131 Bacteria 5116855
107 2595320073 2593339198 Bacteria 7267884
108 2600198833 2599185353 Bacteria 2219443
109 2600402522 2600254943 Bacteria 2613887
110 2644704212 2643221729 Bacteria 6621700
111 2644708906 2643221730 Bacteria 6523787
112 2644715443 2643221731 Bacteria 5623886
113 2644726746 2643221732 Bacteria 5756404
114 2672338307 2671180330 Bacteria 5521719
115 2673821427 2671180694 Bacteria 7506943
116 2685149638 2684622632 Bacteria 5380049
117 2698323541 2695420987 Bacteria 6152737
118 2721505013 2718218445 Bacteria 5113413
119 2723603704 2721755693 Bacteria 6126117
120 2730139698 2728369359 Bacteria 5621728
121 2739233047 2738543010 Bacteria 5583595
122 2757569141 2757320391 Bacteria 4746095
123 2802435796 2802428803 Bacteria 5806948
124 2808870703 2808606364 Bacteria 4465927
125 2816865753 2816332186 Bacteria 5331395
126 2817481320 2816332295 Bacteria 4352468
127 2817616554 2816332336 Bacteria 5207640
128 2819567906 2818991441 Bacteria 5062707
129 2819579214 2818991443 Bacteria 6598732
130 2819708910 2818991465 Bacteria 5388835
131 2821117282 2821111986 Bacteria 6894338
132 2842686280 2842682962 Bacteria 5589973
133 2842884855 2842882022 Bacteria 6158489
134 2849141101 2849139964 Bacteria 5613304
135 2849143154 2849139964 Bacteria 5613304
136 2857461817 2857460504 Bacteria 5194327
137 2857583557 2857581216 Bacteria 5522813
138 2857589827 2857586860 Bacteria 4354574
139 2857596574 2857591370 Bacteria 6569758
140 2857608466 2857604169 Bacteria 5111450
141 2857612857 2857609550 Bacteria 3753890
142 2864735538 2864733723 Bacteria 6770668
143 2865001071 2864997549 Bacteria 5139696
144 2881647160 2881644220 Bacteria 5302661
145 2885533107 2885526491 Bacteria 7164189
146 2889047547 2889042446 Bacteria 7618936
147 2889279636 2889276214 Bacteria 5979355
148 2904119711 2904113452 Bacteria 7796941
149 2904495662 2904490793 Bacteria 7046938
150 2904524115 2904524088 Bacteria 5887454
151 2904596961 2904595352 Bacteria 6124848
152 2904761265 2904755435 Bacteria 7986759
153 2915609042 2915606848 Bacteria 6032732
154 2919147308 2919143609 Bacteria 6219228
155 2919164451 2919160200 Bacteria 6929020
156 2919414398 2919414237 Bacteria 5429133
157 2919431275 2919425241 Bacteria 8055701
158 2919519213 2919517244 Bacteria 5858162
159 2919723582 2919720352 Bacteria 5986006
160 2925331266 2925326138 Bacteria 9652120
161 2928095892 2928093941 Bacteria 5965005
162 2928510789 2928510474 Bacteria 4815308
163 2929006737 2929004312 Bacteria 5678476
164 2929234911 2929233124 Bacteria 5948380
165 2931384597 2931384279 Bacteria 7299545
166 2936342959 2936340661 Bacteria 5139038
167 2938919084 2938917290 Bacteria 5914775
168 2946059434 2946053406 Bacteria 6978655
169 2947428455 2947426588 Bacteria 5357194
170 2956899849 2956897341 Bacteria 5447711
171 2960319511 2960319331 Bacteria 5502575
172 2960381278 2960375949 Bacteria 5361395
173 2964376026 2964375228 Bacteria 4909004
174 2964376897 2964375228 Bacteria 4909004
175 2964377273 2964375228 Bacteria 4909004
176 2965762947 2965761152 Bacteria 5806513
177 2979085378 2979083700 Bacteria 5894929
178 2980127771 2980125574 Bacteria 5567337
179 2980184097 2980182181 Bacteria 9454109
180 2984529801 2984527788 Bacteria 5288478
181 2984535908 2984532647 Bacteria 5288506
182 3001271468 3001267043 Bacteria 4823521
183 3001272423 3001272096 Bacteria 4729684
184 3006861744 3006858327 Bacteria 4317835
185 3006882092 3006879489 Bacteria 4064221
186 3006973321 3006969106 Bacteria 4739423
187 3006977502 3006973921 Bacteria 4423788
188 3006985264 3006984091 Bacteria 4207523
189 3006992346 3006988479 Bacteria 4767936
190 648169993 648028048 Bacteria 5394884
191 8022622898 8022621104 Bacteria 5241040
192 8022794640 8022792930 Bacteria 5693794
193 8022898559 8022893055 Bacteria 5300455
194 8022917709 8022914991 Bacteria 5584517
195 8022951518 8022948649 Bacteria 5366783
196 8023442229 8023438354 Bacteria 5779374
197 8054800513 8054795415 Bacteria 9785225
198 8057584411 8057582654 Bacteria 5218944
199 8057738409 8057733483 Bacteria 6578323
200 8057978382 8057977335 Bacteria 5694872
201 Ga0237819_00297
202 SwRhRL2b_contig_1691626
203 JGI25151J46595_10001681
204 JGI25151J46595_10003661
205 JGI25151J46595_10016225
206 JGI25151J46595_10021496
207 rootH1_10000644
208 rootL2_10013974
209 rootH1_10364009
210 Ga0006562J51391_1000814
211 Ga0055532_1000030
212 Ga0055532_1000038
213 Ga0055532_1002615
214 Ga0065704_10000198
215 Ga0065707_10081746
216 Ga0070670_100067378
217 Ga0105251_10015300
218 Ga0105251_10019916
219 Ga0105244_10000887
220 Ga0105244_10012885
221 Ga0105244_10036070
222 Ga0105244_10047000
223 Ga0105250_10000681
224 Ga0105250_10011833
225 Ga0105250_10042288
226 Ga0105245_10063322
227 Ga0105247_10014085
228 Ga0105243_10000834
229 Ga0105239_10315285
230 Ga0157374_10132135
231 Ga0157372_10627676
232 Ga0209147_100065
233 Ga0209147_100081
234 Ga0209147_100312
235 Ga0209147_105754
236 Ga0209673_1003601
237 Ga0209130_1001330
238 Ga0209675_1011145
239 Ga0209676_1000245
240 Ga0209025_1000164
241 Ga0209025_1000965
242 Ga0209025_1002449
243 Ga0209025_1003052
244 Ga0209025_1006201
245 Ga0209025_1041682
246 Ga0207426_1003797
247 Ga0207696_1000894
248 Ga0207696_1001916
249 Ga0207696_1018477
250 Ga0207655_1027331
251 Ga0207655_1030370
252 Ga0207655_1030374
253 Ga0207713_1003036
254 Ga0207713_1029977
255 Ga0207713_1043991
256 Ga0207713_1043995
257 Ga0207691_10078963
258 Ga0307408_100112321
259 Ga0237819_00070
260 Ga0439449_0004129
261 Ga0466959_0012570
262 Ga0466967_0000208
263 Ga0495584_0068968
264 Ga0495585_0008512
265 Ga0495683_0025188
266 Ga0496100_0000519
267 Ga0496101_0059292
268 Ga0496101_0258005
269 Ga0496102_0001666
270 Ga0496102_0028970
271 Ga0496102_0040604
272 Ga0496103_0001204
273 Ga0496103_0099422
274 Ga0496104_0000832
275 Ga0496105_0000067
276 Ga0496106_0002301
277 Ga0496107_0000724
278 Ga0496109_0000906
279 Ga0496110_0007498
280 Ga0496110_0009002
281 Ga0496110_0052820
282 Ga0496111_0014822
283 Ga0496112_0039582
284 Ga0496113_0021465
285 Ga0496113_0145808
286 Ga0496117_0035393
287 Ga0496119_0000670
288 Ga0496120_0024343
289 Ga0496121_0000011
290 Ga0496121_0102676
291 Ga0496121_0103749
292 Ga0496122_0018841
293 Ga0496122_0051171
294 Ga0496123_0055376
295 Ga0496123_0116980
296 Ga0496125_0001844
297 Ga0496125_0023992
298 Ga0496125_0027894
299 Ga0496126_0003336
300 Ga0496126_0032765
301 Ga0501217_000310
302 2512731311
303 2524187640
304 2553394976
305 2595089431
306 2595320073
307 2600198833
308 2600402522
309 2644704212
310 2644708906
311 2644715443
312 2644726746
313 2672338307
314 2673821427
315 2685149638
316 2698323541
317 2721505013
318 2723603704
319 2730139698
320 2739233047
321 2757569141
322 2802435796
323 2808870703
324 2816865753
325 2817481320
326 2817616554
327 2819567906
328 2819579214
329 2819708910
330 2821117282
331 2842686280
332 2842884855
333 2849141101
334 2849143154
335 2857461817
336 2857583557
337 2857589827
338 2857596574
339 2857608466
340 2857612857
341 2864735538
342 2865001071
343 2881647160
344 2885533107
345 2889047547
346 2889279636
347 2904119711
348 2904495662
349 2904524115
350 2904596961
351 2904761265
352 2915609042
353 2919147308
354 2919164451
355 2919414398
356 2919431275
357 2919519213
358 2919723582
359 2925331266
360 2928095892
361 2928510789
362 2929006737
363 2929234911
364 2931384597
365 2936342959
366 2938919084
367 2946059434
368 2947428455
369 2956899849
370 2960319511
371 2960381278
372 2964376026
373 2964376897
374 2964377273
375 2965762947
376 2979085378
377 2980127771
378 2980184097
379 2984529801
380 2984535908
381 3001271468
382 3001272423
383 3006861744
384 3006882092
385 3006973321
386 3006977502
387 3006985264
388 3006992346
389 648169993
390 8022622898
391 8022794640
392 8022898559
393 8022917709
394 8022951518
395 8023442229
396 8054800513
397 8057584411
398 8057738409
399 8057978382

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07683

CobW_C

Cobalamin synthesis protein cobW C-terminal domain

299

414

0.99

PF02492

cobW

CobW/HypB/UreG, nucleotide-binding domain

48

253

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
4hi0-assembly1.cif.gz_F crystal structure of helicobacter pylori urease accessory protein uref/h/g complex 0.6459 18 257
2hf9-assembly1.cif.gz_A crystal structure of hypb from methanocaldococcus jannaschii in the triphosphate form 0.6367 18 272
5xkt-assembly1.cif.gz_B klebsiella pneumoniae ureg in complex with gmppnp and nickel 0.6295 17 258
2wsm-assembly1.cif.gz_B crystal structure of hydrogenase maturation factor hypb from archaeoglobus fulgidus 0.6176 17 281
4hi0-assembly1.cif.gz_F crystal structure of helicobacter pylori urease accessory protein uref/h/g complex 0.6153 18 257
ID Description Score Start End Superfamily
4ixnA02 Alpha Beta;2-Layer Sandwich;Hypothetical Protein Yjia; Chain: A;domain 2;CobW-like, C-terminal domain 0.8502 305 447 3.30.1220.10
af_Q2G0B0_203_306_3.30.1220.10 Alpha Beta;2-Layer Sandwich;Hypothetical Protein Yjia; Chain: A;domain 2;CobW-like, C-terminal domain 0.8375 305 445 3.30.1220.10
af_Q869Q0_287_420_3.30.1220.10 Alpha Beta;2-Layer Sandwich;Hypothetical Protein Yjia; Chain: A;domain 2;CobW-like, C-terminal domain 0.8038 296 446 3.30.1220.10
af_Q2G0W4_1_229_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.7948 17 264 3.40.50.300
af_P9WPI5_235_351_3.30.1220.10 Alpha Beta;2-Layer Sandwich;Hypothetical Protein Yjia; Chain: A;domain 2;CobW-like, C-terminal domain 0.7894 307 446 3.30.1220.10
ID Description Score Start End GO Terms
AF-A0A532F366-F1-model_v4 GTP-binding protein 0.8803 203 450
AF-A0A441UDY2-F1-model_v4 GTP-binding protein 0.8563 105 267
AF-A0A485L3U6-F1-model_v4 Aste57867_15186 protein 0.8414 16 273
AF-A0A087N7C0-F1-model_v4 Putative cobalamin synthesis protein 0.8356 13 450 GO:0016787
AF-A0A7G9FGS1-F1-model_v4 GTP-binding protein 0.8338 13 448 GO:0016787

Map