F308348

General Info

Members Datasets Scaffolds Average Seq Length
201 138 402 291

Family's Representative Sequence

Representative Sequence 3300006844|Ga0075428_100009684|Ga0075428_1000096848
Length 330
Sequence MAEQHRGRDSPGYDRRVTAPPARARQRPADQPAPQLVPPVESHTRHRASLYHRVYLRALAEVRLTALAIWRGIVGVYNSDDLTFAASIAYYALLSLFPFFLLLFSVVAGVTSSEADRQEVLGFVLRYFPRQFDFVTSQLNSMQDARLKLGVFGSILMVWAAMGVFGAITSAVNHAWGVEKQPSYFKHKMISFVMLAMASSWFAAVLERHESLQALQGFAVKWASTFAFIFVVGLIFYFVPNAKVRFRDVWVGAVVTGLAWRGALAGFSWYVRDLTRFNNIHGSIGAVVVFLIWIYTSAVILLYGVEVTAANARLRRRRPDEIPAAPTPRI

Samples

Sample ID Description Type Environment
1 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
2 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
3 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
4 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
8 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
12 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
13 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
14 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
21 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
22 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
23 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
24 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
25 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
28 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
29 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
30 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
31 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
32 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
33 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
34 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
35 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
36 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
37 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
38 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
39 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
40 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
41 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
42 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
43 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
44 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
45 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
46 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
47 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
48 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
49 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
52 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
53 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
54 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
55 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
56 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
57 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
83 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
84 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
85 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
86 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
87 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
88 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
89 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
90 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
91 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
92 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
93 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
94 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
95 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
96 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
97 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
98 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
99 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
100 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
101 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
102 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
103 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
104 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
105 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
106 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
107 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
108 3300049522 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control Metagenome Rhizosphere
109 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
115 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
116 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
117 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
118 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
119 3300049779 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_A_7_drought Metagenome Rhizosphere
120 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
121 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
122 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
123 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
124 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
125 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
126 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
127 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
128 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
129 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
130 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
131 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
132 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
133 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
134 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
135 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
136 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
137 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
138 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.98
Nodule 0
Rhizoplane 0
Rhizosphere 95.02
Stem 0
Stem Tuber 0
Unclassified 10.45

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075428_100009684 3300006844 Bacteria 10702
2 Ga0065704_10227722 3300005289 Bacteria 1053
3 Ga0065712_10003164 3300005290 Bacteria 5688
4 Ga0065715_10141907 3300005293 Bacteria 1836
5 Ga0065707_10009164 3300005295 Bacteria 2840
6 Ga0070670_100006801 3300005331 Bacteria 9681
7 Ga0070670_100074670 3300005331 Bacteria 2913
8 Ga0070670_100089298 3300005331 Bacteria 2649
9 Ga0070677_10022573 3300005333 Bacteria 2320
10 Ga0070666_10217616 3300005335 Unclassified 1346
11 Ga0070660_100154430 3300005339 Bacteria 1847
12 Ga0070689_100056220 3300005340 Bacteria 3051
13 Ga0070691_10029866 3300005341 Bacteria 2552
14 Ga0070687_100003354 3300005343 Bacteria 6203
15 Ga0070669_100269283 3300005353 Bacteria 1361
16 Ga0070674_100198610 3300005356 Unclassified 1547
17 Ga0070673_100009975 3300005364 Bacteria 6404
18 Ga0070659_100050564 3300005366 Bacteria 3267
19 Ga0070659_100251653 3300005366 Bacteria 1464
20 Ga0070667_100027508 3300005367 Bacteria 4732
21 Ga0070678_100079546 3300005456 Unclassified 2480
22 Ga0070681_10200658 3300005458 Bacteria 1913
23 Ga0070707_100102442 3300005468 Bacteria 2774
24 Ga0070679_100277735 3300005530 Bacteria 1628
25 Ga0070679_100316171 3300005530 Bacteria 1511
26 Ga0070684_100011422 3300005535 Bacteria 7077
27 Ga0070672_100012276 3300005543 Bacteria 6005
28 Ga0070693_100079843 3300005547 Bacteria 1948
29 Ga0070704_100489999 3300005549 Bacteria 1065
30 Ga0068855_100074574 3300005563 Bacteria 3940
31 Ga0068857_100366017 3300005577 Bacteria 1337
32 Ga0068854_100031137 3300005578 Bacteria 3705
33 Ga0070702_100264254 3300005615 Unclassified 1173
34 Ga0068852_100044197 3300005616 Bacteria 3782
35 Ga0068859_100014571 3300005617 Bacteria 7897
36 Ga0068859_100432471 3300005617 Bacteria 1413
37 Ga0068864_100018023 3300005618 Bacteria 5893
38 Ga0068864_100136294 3300005618 Bacteria 2210
39 Ga0068851_10040999 3300005834 Bacteria 2328
40 Ga0068858_100052578 3300005842 Bacteria 3768
41 Ga0068858_100131343 3300005842 Bacteria 2348
42 Ga0068860_100022174 3300005843 Bacteria 6147
43 Ga0068860_100025470 3300005843 Bacteria 5706
44 Ga0075364_10007700 3300006051 Bacteria 6409
45 Ga0075362_10001490 3300006177 Bacteria 7517
46 Ga0075367_10003142 3300006178 Bacteria 7776
47 Ga0075366_10015776 3300006195 Bacteria 4336
48 Ga0068871_100228005 3300006358 Bacteria 1616
49 Ga0068871_100352138 3300006358 Unclassified 1303
50 Ga0075428_100107190 3300006844 Unclassified 3045
51 Ga0075430_100000672 3300006846 Bacteria 26107
52 Ga0075430_100013045 3300006846 Bacteria 7082
53 Ga0075431_100019690 3300006847 Bacteria 6886
54 Ga0075431_100037725 3300006847 Unclassified 4976
55 Ga0075431_100063207 3300006847 Bacteria 3820
56 Ga0075433_10010101 3300006852 Bacteria 7567
57 Ga0075433_10200497 3300006852 Unclassified 1774
58 Ga0075433_10263616 3300006852 Bacteria 1527
59 Ga0075434_100077587 3300006871 Bacteria 3317
60 Ga0075429_100054394 3300006880 Bacteria 3481
61 Ga0097620_100014571 3300006931 Bacteria 7897
62 Ga0097620_100432441 3300006931 Bacteria 1413
63 Ga0075435_100002185 3300007076 Bacteria 12908
64 Ga0105240_10191518 3300009093 Bacteria 2404
65 Ga0111539_10000434 3300009094 Bacteria 52748
66 Ga0111539_10020168 3300009094 Bacteria 8214
67 Ga0111539_10218432 3300009094 Bacteria 2220
68 Ga0114129_10003752 3300009147 Bacteria 21421
69 Ga0114129_10011838 3300009147 Bacteria 12409
70 Ga0114129_10013612 3300009147 Bacteria 11591
71 Ga0114129_10021568 3300009147 Bacteria 9144
72 Ga0114129_10047978 3300009147 Bacteria 6000
73 Ga0114129_10089416 3300009147 Bacteria 4269
74 Ga0105243_10007415 3300009148 Bacteria 8434
75 Ga0105248_10029082 3300009177 Bacteria 6161
76 Ga0105248_10119930 3300009177 Bacteria 2967
77 Ga0105238_10275624 3300009551 Bacteria 1663
78 Ga0105249_10379118 3300009553 Unclassified 1440
79 Ga0157372_10374702 3300013307 Bacteria 1659
80 Ga0163163_10051126 3300014325 Bacteria 4074
81 Ga0163163_10276653 3300014325 Bacteria 1730
82 Ga0207645_10009308 3300025907 Bacteria 6803
83 Ga0207707_10177356 3300025912 Bacteria 1861
84 Ga0207662_10000449 3300025918 Bacteria 18232
85 Ga0207662_10107849 3300025918 Bacteria 1733
86 Ga0207657_10437746 3300025919 Bacteria 1026
87 Ga0207652_10074067 3300025921 Bacteria 2964
88 Ga0207652_10168040 3300025921 Bacteria 1968
89 Ga0207681_10334589 3300025923 Bacteria 1208
90 Ga0207650_10242817 3300025925 Bacteria 1456
91 Ga0207687_10349081 3300025927 Unclassified 1205
92 Ga0207644_10030390 3300025931 Bacteria 3756
93 Ga0207690_10181249 3300025932 Bacteria 1586
94 Ga0207709_10099790 3300025935 Bacteria 1917
95 Ga0207670_10050913 3300025936 Bacteria 2778
96 Ga0207711_10017677 3300025941 Bacteria 5924
97 Ga0207711_10052191 3300025941 Bacteria 3504
98 Ga0207661_10358099 3300025944 Bacteria 1318
99 Ga0207679_10290254 3300025945 Bacteria 1406
100 Ga0207667_10686155 3300025949 Bacteria 1027
101 Ga0207651_10016945 3300025960 Bacteria 4288
102 Ga0207677_10164293 3300026023 Bacteria 1729
103 Ga0207708_10000847 3300026075 Bacteria 23031
104 Ga0207702_10350383 3300026078 Bacteria 1413
105 Ga0207648_10047146 3300026089 Bacteria 3778
106 Ga0207676_10013555 3300026095 Bacteria 5852
107 Ga0207676_10115712 3300026095 Bacteria 2252
108 Ga0207674_10337984 3300026116 Bacteria 1456
109 Ga0207683_10257230 3300026121 Bacteria 1594
110 Ga0207698_10085455 3300026142 Unclassified 2562
111 Ga0209998_10033135 3300027717 Bacteria 1151
112 Ga0207428_10003733 3300027907 Bacteria 14622
113 Ga0307408_100052295 3300031548 Bacteria 2946
114 Ga0307408_100185128 3300031548 Bacteria 1673
115 Ga0307405_10146366 3300031731 Bacteria 1655
116 Ga0307405_10302913 3300031731 Unclassified 1213
117 Ga0307406_10064676 3300031901 Bacteria 2375
118 Ga0307407_10049314 3300031903 Bacteria 2402
119 Ga0307412_10061978 3300031911 Bacteria 2516
120 Ga0307409_100099121 3300031995 Bacteria 2412
121 Ga0307409_100178769 3300031995 Bacteria 1876
122 Ga0307409_100200037 3300031995 Bacteria 1787
123 Ga0307416_100017109 3300032002 Bacteria 5060
124 Ga0307416_100030239 3300032002 Unclassified 4061
125 Ga0307416_100081575 3300032002 Bacteria 2735
126 Ga0307411_10042469 3300032005 Bacteria 2901
127 Ga0307411_10063458 3300032005 Bacteria 2469
128 Ga0373955_0096592 3300035172 Bacteria 1691
129 Ga0373935_0081330 3300035692 Bacteria 2106
130 Ga0373937_0154314 3300036401 Bacteria 2152
131 Ga0395901_0577657 3300038443 Bacteria 1136
132 Ga0439439_0023679 3300041406 Bacteria 1539
133 Ga0439431_0021248 3300041997 Bacteria 1557
134 Ga0439449_0101025 3300042007 Bacteria 1066
135 Ga0450923_004151 3300042125 Bacteria 2255
136 Ga0439446_0006643 3300042156 Bacteria 3024
137 Ga0439434_0012088 3300042435 Bacteria 2553
138 Ga0439434_0024185 3300042435 Unclassified 1832
139 Ga0439464_0002932 3300042439 Bacteria 4253
140 Ga0451577_0017258 3300042876 Bacteria 6672
141 Ga0439440_0043490 3300042993 Bacteria 1102
142 Ga0495618_0205556 3300046514 Unclassified 1246
143 Ga0495684_0113346 3300047471 Bacteria 2045
144 Ga0495602_0129960 3300048088 Bacteria 2011
145 Ga0501299_013481 3300049522 Bacteria 1411
146 Ga0501036_0052167 3300049572 Bacteria 3464
147 Ga0501038_0262300 3300049574 Bacteria 1365
148 Ga0501040_0028906 3300049576 Bacteria 3739
149 Ga0501040_0076993 3300049576 Bacteria 2307
150 Ga0501041_0053005 3300049577 Unclassified 2474
151 Ga0501041_0090314 3300049577 Bacteria 1891
152 Ga0501041_0175042 3300049577 Bacteria 1343
153 Ga0501042_0399220 3300049578 Unclassified 996
154 Ga0501071_0008879 3300049587 Bacteria 6665
155 Ga0501071_0045631 3300049587 Bacteria 3146
156 Ga0501071_0083117 3300049587 Bacteria 2346
157 Ga0501072_0007656 3300049588 Bacteria 8198
158 Ga0501072_0479279 3300049588 Bacteria 984
159 Ga0501075_0041096 3300049591 Bacteria 3465
160 Ga0501075_0087315 3300049591 Bacteria 2364
161 Ga0501075_0154116 3300049591 Unclassified 1752
162 Ga0501075_0184320 3300049591 Bacteria 1592
163 Ga0501075_0378980 3300049591 Bacteria 1078
164 Ga0501080_0072518 3300049742 Bacteria 3204
165 Ga0501083_0148173 3300049744 Bacteria 1537
166 Ga0501283_012441 3300049779 Bacteria 1279
167 Ga0501045_0025227 3300049824 Bacteria 4272
168 nmdc:mga03683_589_c1 3300050489 Bacteria 10433
169 nmdc:mga00v17_15924_c1 3300050491 Bacteria 4230
170 nmdc:mga00v17_4685_c1 3300050491 Bacteria 7144
171 nmdc:mga0k408_12689_c1 3300050493 Bacteria 4608
172 nmdc:mga0k408_221203_c1 3300050493 Bacteria 1130
173 nmdc:mga07m45_157524_c1 3300050496 Bacteria 1318
174 nmdc:mga05p37_2141_c1 3300050507 Bacteria 21407
175 nmdc:mga05p37_2460_c1 3300050507 Bacteria 21542
176 nmdc:mga05p37_40719_c1 3300050507 Bacteria 5705
177 nmdc:mga05p37_81691_c1 3300050507 Unclassified 3981
178 nmdc:mga09592_20976_c1 3300050508 Bacteria 5379
179 nmdc:mga0qj67_18584_c1 3300050509 Bacteria 5298
180 nmdc:mga0qj67_55918_c1 3300050509 Bacteria 3127
181 nmdc:mga0qj67_8590_c1 3300050509 Bacteria 7578
182 nmdc:mga06r32_122092_c1 3300050510 Bacteria 2570
183 nmdc:mga06r32_359592_c1 3300050510 Bacteria 1440
184 nmdc:mga08y16_11420_c1 3300050511 Bacteria 9333
185 nmdc:mga08y16_184430_c1 3300050511 Bacteria 2166
186 nmdc:mga08y16_221197_c1 3300050511 Bacteria 1960
187 nmdc:mga0n895_71030_c1 3300050512 Bacteria 3451
188 nmdc:mga0rr50_50394_c1 3300050513 Bacteria 3085
189 nmdc:mga0rr50_655451_c1 3300050513 Unclassified 896
190 nmdc:mga08x19_14949_c1 3300050514 Bacteria 4714
191 nmdc:mga08x19_218604_c1 3300050514 Bacteria 1309
192 nmdc:mga0a205_109129_c1 3300050515 Unclassified 2666
193 nmdc:mga0a205_176941_c1 3300050515 Bacteria 2029
194 nmdc:mga0a205_388671_c1 3300050515 Bacteria 1260
195 nmdc:mga0a205_39678_c1 3300050515 Bacteria 4531
196 Ga0590071_001780 3300059421 Bacteria 5562
197 Ga0590075_000152 3300059424 Bacteria 18638
198 Ga0590077_000481 3300059426 Bacteria 11212
199 Ga0501082_0179968 3300060353 Bacteria 1839
200 Ga0501082_0253579 3300060353 Bacteria 1531
201 Ga0530510_0183186 3300061734 Bacteria 1553
202 Ga0075428_100009684
203 Ga0065704_10227722
204 Ga0065712_10003164
205 Ga0065715_10141907
206 Ga0065707_10009164
207 Ga0070670_100006801
208 Ga0070670_100074670
209 Ga0070670_100089298
210 Ga0070677_10022573
211 Ga0070666_10217616
212 Ga0070660_100154430
213 Ga0070689_100056220
214 Ga0070691_10029866
215 Ga0070687_100003354
216 Ga0070669_100269283
217 Ga0070674_100198610
218 Ga0070673_100009975
219 Ga0070659_100050564
220 Ga0070659_100251653
221 Ga0070667_100027508
222 Ga0070678_100079546
223 Ga0070681_10200658
224 Ga0070707_100102442
225 Ga0070679_100277735
226 Ga0070679_100316171
227 Ga0070684_100011422
228 Ga0070672_100012276
229 Ga0070693_100079843
230 Ga0070704_100489999
231 Ga0068855_100074574
232 Ga0068857_100366017
233 Ga0068854_100031137
234 Ga0070702_100264254
235 Ga0068852_100044197
236 Ga0068859_100014571
237 Ga0068859_100432471
238 Ga0068864_100018023
239 Ga0068864_100136294
240 Ga0068851_10040999
241 Ga0068858_100052578
242 Ga0068858_100131343
243 Ga0068860_100022174
244 Ga0068860_100025470
245 Ga0075364_10007700
246 Ga0075362_10001490
247 Ga0075367_10003142
248 Ga0075366_10015776
249 Ga0068871_100228005
250 Ga0068871_100352138
251 Ga0075428_100107190
252 Ga0075430_100000672
253 Ga0075430_100013045
254 Ga0075431_100019690
255 Ga0075431_100037725
256 Ga0075431_100063207
257 Ga0075433_10010101
258 Ga0075433_10200497
259 Ga0075433_10263616
260 Ga0075434_100077587
261 Ga0075429_100054394
262 Ga0097620_100014571
263 Ga0097620_100432441
264 Ga0075435_100002185
265 Ga0105240_10191518
266 Ga0111539_10000434
267 Ga0111539_10020168
268 Ga0111539_10218432
269 Ga0114129_10003752
270 Ga0114129_10011838
271 Ga0114129_10013612
272 Ga0114129_10021568
273 Ga0114129_10047978
274 Ga0114129_10089416
275 Ga0105243_10007415
276 Ga0105248_10029082
277 Ga0105248_10119930
278 Ga0105238_10275624
279 Ga0105249_10379118
280 Ga0157372_10374702
281 Ga0163163_10051126
282 Ga0163163_10276653
283 Ga0207645_10009308
284 Ga0207707_10177356
285 Ga0207662_10000449
286 Ga0207662_10107849
287 Ga0207657_10437746
288 Ga0207652_10074067
289 Ga0207652_10168040
290 Ga0207681_10334589
291 Ga0207650_10242817
292 Ga0207687_10349081
293 Ga0207644_10030390
294 Ga0207690_10181249
295 Ga0207709_10099790
296 Ga0207670_10050913
297 Ga0207711_10017677
298 Ga0207711_10052191
299 Ga0207661_10358099
300 Ga0207679_10290254
301 Ga0207667_10686155
302 Ga0207651_10016945
303 Ga0207677_10164293
304 Ga0207708_10000847
305 Ga0207702_10350383
306 Ga0207648_10047146
307 Ga0207676_10013555
308 Ga0207676_10115712
309 Ga0207674_10337984
310 Ga0207683_10257230
311 Ga0207698_10085455
312 Ga0209998_10033135
313 Ga0207428_10003733
314 Ga0307408_100052295
315 Ga0307408_100185128
316 Ga0307405_10146366
317 Ga0307405_10302913
318 Ga0307406_10064676
319 Ga0307407_10049314
320 Ga0307412_10061978
321 Ga0307409_100099121
322 Ga0307409_100178769
323 Ga0307409_100200037
324 Ga0307416_100017109
325 Ga0307416_100030239
326 Ga0307416_100081575
327 Ga0307411_10042469
328 Ga0307411_10063458
329 Ga0373955_0096592
330 Ga0373935_0081330
331 Ga0373937_0154314
332 Ga0395901_0577657
333 Ga0439439_0023679
334 Ga0439431_0021248
335 Ga0439449_0101025
336 Ga0450923_004151
337 Ga0439446_0006643
338 Ga0439434_0012088
339 Ga0439434_0024185
340 Ga0439464_0002932
341 Ga0451577_0017258
342 Ga0439440_0043490
343 Ga0495618_0205556
344 Ga0495684_0113346
345 Ga0495602_0129960
346 Ga0501299_013481
347 Ga0501036_0052167
348 Ga0501038_0262300
349 Ga0501040_0028906
350 Ga0501040_0076993
351 Ga0501041_0053005
352 Ga0501041_0090314
353 Ga0501041_0175042
354 Ga0501042_0399220
355 Ga0501071_0008879
356 Ga0501071_0045631
357 Ga0501071_0083117
358 Ga0501072_0007656
359 Ga0501072_0479279
360 Ga0501075_0041096
361 Ga0501075_0087315
362 Ga0501075_0154116
363 Ga0501075_0184320
364 Ga0501075_0378980
365 Ga0501080_0072518
366 Ga0501083_0148173
367 Ga0501283_012441
368 Ga0501045_0025227
369 nmdc:mga03683_589_c1
370 nmdc:mga00v17_15924_c1
371 nmdc:mga00v17_4685_c1
372 nmdc:mga0k408_12689_c1
373 nmdc:mga0k408_221203_c1
374 nmdc:mga07m45_157524_c1
375 nmdc:mga05p37_2141_c1
376 nmdc:mga05p37_2460_c1
377 nmdc:mga05p37_40719_c1
378 nmdc:mga05p37_81691_c1
379 nmdc:mga09592_20976_c1
380 nmdc:mga0qj67_18584_c1
381 nmdc:mga0qj67_55918_c1
382 nmdc:mga0qj67_8590_c1
383 nmdc:mga06r32_122092_c1
384 nmdc:mga06r32_359592_c1
385 nmdc:mga08y16_11420_c1
386 nmdc:mga08y16_184430_c1
387 nmdc:mga08y16_221197_c1
388 nmdc:mga0n895_71030_c1
389 nmdc:mga0rr50_50394_c1
390 nmdc:mga0rr50_655451_c1
391 nmdc:mga08x19_14949_c1
392 nmdc:mga08x19_218604_c1
393 nmdc:mga0a205_109129_c1
394 nmdc:mga0a205_176941_c1
395 nmdc:mga0a205_388671_c1
396 nmdc:mga0a205_39678_c1
397 Ga0590071_001780
398 Ga0590075_000152
399 Ga0590077_000481
400 Ga0501082_0179968
401 Ga0501082_0253579
402 Ga0530510_0183186

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03631

Virul_fac_BrkB

Virulence factor BrkB

78

315

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
3tx3-assembly1.cif.gz_A cysz, a putative sulfate permease 0.3894 17 277
3tx3-assembly1.cif.gz_A cysz, a putative sulfate permease 0.3792 17 277
4xku-assembly1.cif.gz_F e coli bfr variant y114f 0.3245 30 170
5f15-assembly1.cif.gz_A crystal structure of arnt from cupriavidus metallidurans bound to undecaprenyl phosphate 0.3122 73 267
6quz-assembly2.cif.gz_C structure of atpgs-bound outward-facing tm287/288 in complex with sybody sb_tm35 0.3048 31 283
ID Description Score Start End Superfamily
af_A4I8B9_19_125_1.20.58.90 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.4206 30 151 1.20.58.90
af_A4I8B9_19_125_1.20.58.90 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.4149 30 151 1.20.58.90
af_O44196_80_262_1.10.357.20 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;SLC41 divalent cation transporters, integral membrane domain 0.3414 63 267 1.10.357.20
af_O44196_80_262_1.10.357.20 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;SLC41 divalent cation transporters, integral membrane domain 0.337 63 267 1.10.357.20
4yzeD00 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;Tetracycline Repressor, domain 2 0.3282 47 157 1.10.357.10
ID Description Score Start End GO Terms
AF-A0A2V8DNY1-F1-model_v4 YihY/virulence factor BrkB family protein 0.8568 1 290 GO:0005886
AF-A0A7V2PS30-F1-model_v4 YihY/virulence factor BrkB family protein 0.8565 13 270 GO:0005886
AF-A0A212R5J4-F1-model_v4 Membrane protein 0.8559 18 273 GO:0005886
AF-A0A2V8DNY1-F1-model_v4 YihY/virulence factor BrkB family protein 0.8541 1 290 GO:0005886
AF-A0A6N7DYY7-F1-model_v4 YihY family inner membrane protein 0.8472 20 277 GO:0005886

Map