F306207

General Info

Members Datasets Scaffolds Average Seq Length
199 160 184 153

Family's Representative Sequence

Representative Sequence 3300046525|Ga0495663_0019201|Ga0495663_0019201_80_619
Length 179
Sequence MLTMKAKYALRAMCALARAEGGRLPAGSAYAPRHGRLQARAIAEHSGAPGKFLESILVDLREAGFIDSRRGQKGGHALARPADQIMVGDLIRAIDGPLAPVRCASVSAYQPCADCPDPDACSLRALMREARDALSSVLDRRSLHELALAPDFGAAALDPALLDATFLPVATLAYGGDRA

Samples

Sample ID Description Type Environment
1 2524614729 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
2 2558860983 Allorhizobium undicola ATCC 700741 Isolate Rhizoplane
3 2627854209 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
4 2643221558 Rhizobium sp. Root149 Isolate Unclassified
5 2643221568 Rhizobium sp. Root564 Isolate Unclassified
6 2643221593 Lysobacter sp. Root690 Isolate Unclassified
7 2751185800 Brucella pituitosa AA2 Isolate Unclassified
8 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
9 2773857925 Microvirga vignae BR3299 Isolate Unclassified
10 2854911287 Brucella lupini LUP21 Isolate Unclassified
11 2882456835 Microvirga sp. KLBC 81 Isolate Unclassified
12 2919166419 Agrobacterium cavarae 2074 Isolate Unclassified
13 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
14 2941489479 Lysobacter enzymogenes 2943 Isolate Rhizosphere
15 2995948881 Lysobacter enzymogenes B25 Isolate Unclassified
16 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
17 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
18 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
19 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
20 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
21 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
22 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
23 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
24 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
25 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
26 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
27 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
28 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
29 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
30 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
31 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
32 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
33 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
34 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
35 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
36 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
37 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
38 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
39 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
40 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
41 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
42 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
43 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
44 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
45 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
46 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
47 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
48 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
50 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
51 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
52 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
53 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
54 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
55 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
56 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
57 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
58 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
59 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
60 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
61 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
62 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
63 3300015684 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.2_F02 Metagenome Unclassified
64 3300015689 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A02 Metagenome Rhizosphere
65 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
66 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
67 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
68 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
69 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
70 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
71 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
72 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
73 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
89 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
90 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
91 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
92 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
93 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
94 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
95 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
96 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
97 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
98 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
99 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
100 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
101 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
102 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
103 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
104 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
105 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
106 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
107 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
108 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
109 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
110 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
111 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
112 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
113 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
114 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
115 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
116 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
117 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
118 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
119 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
120 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
121 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
122 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
123 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
124 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
125 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
126 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
127 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
128 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
129 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
130 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
131 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
132 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
133 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
134 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
135 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
136 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
137 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
138 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
139 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
140 3300049513 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D25_A_7_control Metagenome Rhizosphere
141 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
143 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
144 3300049772 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E11_B_4_control Metagenome Rhizosphere
145 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
146 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
147 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
148 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
149 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
150 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
151 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
152 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
153 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
154 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
155 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
156 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
157 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
158 3300053734 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 endosphere Metagenome Endosphere
159 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
160 8018150411 Rhizobium straminoryzae SM12 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.96
Metatranscriptomes 0
Isolates 8.04

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.59
Nodule 0
Rhizoplane 0.5
Rhizosphere 61.31
Stem 0
Stem Tuber 0
Unclassified 20.6

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000088 3300003187 Bacteria 124209
2 JGI25153J46596_10045612 3300003215 Bacteria 1306
3 rootH2_10083861 3300003320 Unclassified 1329
4 rootL2_10013534 3300003322 Bacteria 1772
5 rootL2_10133970 3300003322 Bacteria 2619
6 rootH1_10021322 3300003323 Bacteria 2240
7 rootH1_10083468 3300003316 Bacteria 1609
8 rootH1_10083468 3300003323 Bacteria 3691
9 rootH1_10106295 3300003323 Bacteria 1307
10 rootH1_10174146 3300003323 Bacteria 4756
11 rootH1_10244582 3300003323 Unclassified 1565
12 JGI25160J50197_1009015 3300003354 Bacteria 3740
13 Ga0055526_1000003 3300003771 Bacteria 413092
14 Ga0055537_1000153 3300003773 Bacteria 51908
15 Ga0055524_1000002 3300003775 Bacteria 459550
16 Ga0055534_1000050 3300003784 Bacteria 92561
17 Ga0055528_1000001 3300003790 Bacteria 402384
18 Ga0055540_1004238 3300003792 Bacteria 6580
19 Ga0065715_10585199 3300005293 Bacteria 717
20 Ga0070666_10838161 3300005335 Bacteria 678
21 Ga0068868_100428050 3300005338 Bacteria 1147
22 Ga0070689_101150166 3300005340 Bacteria 695
23 Ga0070669_101488131 3300005353 Bacteria 588
24 Ga0070675_100420265 3300005354 Unclassified 1195
25 Ga0070667_100257074 3300005367 Bacteria 1563
26 Ga0070667_100306194 3300005367 Bacteria 1431
27 Ga0070667_100414699 3300005367 Bacteria 1227
28 Ga0070705_100403059 3300005440 Bacteria 1013
29 Ga0068867_100332956 3300005459 Bacteria 1261
30 Ga0070672_100030887 3300005543 Bacteria 4029
31 Ga0070672_100177630 3300005543 Bacteria 1773
32 Ga0070665_100152652 3300005548 Bacteria 2312
33 Ga0068854_100723501 3300005578 Bacteria 861
34 Ga0068859_100151174 3300005617 Bacteria 2397
35 Ga0068864_101691625 3300005618 Bacteria 637
36 Ga0068851_10694221 3300005834 Bacteria 626
37 Ga0075364_10021635 3300006051 Bacteria 4053
38 Ga0075362_10746699 3300006177 Bacteria 512
39 Ga0068865_100966784 3300006881 Bacteria 744
40 Ga0097620_100151172 3300006931 Bacteria 2397
41 Ga0105240_10011164 3300009093 Bacteria 12542
42 Ga0105240_10883894 3300009093 Bacteria 962
43 Ga0111539_10133986 3300009094 Bacteria 2901
44 Ga0105245_10145687 3300009098 Bacteria 2235
45 Ga0105245_11374930 3300009098 Unclassified 756
46 Ga0105243_10086937 3300009148 Bacteria 2565
47 Ga0105241_10509063 3300009174 Bacteria 1075
48 Ga0105248_10210892 3300009177 Bacteria 2188
49 Ga0105237_10000020 3300009545 Bacteria 231046
50 Ga0105239_10106759 3300010375 Bacteria 3102
51 Ga0157373_10153625 3300013100 Bacteria 1619
52 Ga0157370_10050892 3300013104 Bacteria 3958
53 Ga0157374_10113950 3300013296 Bacteria 2603
54 Ga0157374_10638156 3300013296 Bacteria 1076
55 Ga0157378_10065406 3300013297 Bacteria 3255
56 Ga0163162_10269160 3300013306 Bacteria 1835
57 Ga0163162_10701585 3300013306 Bacteria 1133
58 Ga0157375_10041724 3300013308 Bacteria 4433
59 Ga0157375_10170663 3300013308 Bacteria 2323
60 Ga0157375_10919448 3300013308 Bacteria 1018
61 Ga0163163_11825945 3300014325 Bacteria 668
62 Ga0157380_10237248 3300014326 Bacteria 1642
63 Ga0183365_10006 3300015684 Bacteria 225936
64 Ga0183360_10002 3300015689 Bacteria 953821
65 Ga0207425_1001433 3300025245 Bacteria 9975
66 Ga0209565_1000002 3300025263 Bacteria 1423083
67 Ga0209565_1005090 3300025263 Bacteria 3876
68 Ga0209673_1000002 3300025273 Bacteria 1423083
69 Ga0209675_1000002 3300025291 Bacteria 1423083
70 Ga0209025_1000134 3300025294 Bacteria 194505
71 Ga0209564_1000004 3300025295 Bacteria 1424639
72 Ga0209758_1012967 3300025297 Bacteria 4600
73 Ga0209256_1000004 3300025299 Bacteria 1424643
74 Ga0209256_1062584 3300025299 Bacteria 862
75 Ga0207695_10010977 3300025913 Bacteria 11010
76 Ga0207671_10000010 3300025914 Bacteria 568302
77 Ga0207657_10999679 3300025919 Bacteria 642
78 Ga0207659_10851295 3300025926 Bacteria 784
79 Ga0207687_10467688 3300025927 Bacteria 1048
80 Ga0207709_10173893 3300025935 Bacteria 1514
81 Ga0207709_10676541 3300025935 Bacteria 824
82 Ga0207691_10012346 3300025940 Bacteria 8187
83 Ga0207691_10187870 3300025940 Bacteria 1803
84 Ga0207711_10138478 3300025941 Bacteria 2188
85 Ga0207640_11652417 3300025981 Bacteria 578
86 Ga0207658_10195653 3300025986 Bacteria 1684
87 Ga0207658_10486177 3300025986 Unclassified 1098
88 Ga0207677_10611628 3300026023 Bacteria 957
89 Ga0207702_10173748 3300026078 Bacteria 1978
90 Ga0207648_11205461 3300026089 Bacteria 711
91 Ga0207676_11724085 3300026095 Bacteria 625
92 Ga0268266_10682564 3300028379 Bacteria 989
93 Ga0307515_10000666 3300028794 Bacteria 79271
94 Ga0307515_10000674 3300028794 Bacteria 78735
95 Ga0265324_10074221 3300029957 Bacteria 1158
96 Ga0265340_10021988 3300031247 Bacteria 3265
97 Ga0265339_10061548 3300031249 Bacteria 2020
98 Ga0307408_100101845 3300031548 Bacteria 2189
99 Ga0307408_101214808 3300031548 Bacteria 704
100 Ga0307408_101702199 3300031548 Bacteria 601
101 Ga0265313_10028471 3300031595 Bacteria 2903
102 Ga0265342_10007300 3300031712 Bacteria 8113
103 Ga0265342_10047269 3300031712 Bacteria 2583
104 Ga0307516_10467139 3300031730 Bacteria 917
105 Ga0307405_11009550 3300031731 Bacteria 710
106 Ga0307406_10020897 3300031901 Bacteria 3864
107 Ga0307406_10083327 3300031901 Bacteria 2132
108 Ga0307412_10708489 3300031911 Bacteria 865
109 Ga0307412_10735059 3300031911 Bacteria 850
110 Ga0307411_10252170 3300032005 Bacteria 1388
111 Ga0307411_11261473 3300032005 Bacteria 672
112 Ga0395900_0279993 3300037418 Bacteria 1660
113 Ga0395898_0513634 3300037466 Bacteria 1139
114 Ga0395905_0000070 3300037471 Bacteria 175662
115 Ga0395905_0007826 3300037471 Bacteria 10590
116 Ga0395905_0377876 3300037471 Bacteria 1310
117 Ga0395901_0137333 3300038443 Bacteria 2569
118 Ga0439436_0009760 3300041404 Bacteria 2938
119 Ga0439439_0001481 3300041406 Bacteria 4694
120 Ga0439447_006804 3300041407 Bacteria 3675
121 Ga0439465_0046290 3300041413 Bacteria 1416
122 Ga0451837_0539616 3300041494 Bacteria 760
123 Ga0439449_0012505 3300042007 Bacteria 3192
124 Ga0439462_0020586 3300042015 Bacteria 1720
125 Ga0439434_0119965 3300042435 Bacteria 857
126 Ga0451577_0009105 3300042876 Bacteria 9581
127 Ga0466969_0000233 3300044656 Bacteria 30390
128 Ga0466966_0000394 3300044684 Bacteria 28289
129 Ga0466961_0002305 3300044693 Bacteria 11861
130 Ga0466961_0152698 3300044693 Unclassified 1441
131 Ga0466963_0039942 3300044694 Bacteria 3075
132 Ga0466971_0001686 3300044719 Bacteria 9355
133 Ga0466970_0049889 3300044765 Bacteria 2232
134 Ga0466957_0001431 3300044842 Bacteria 12459
135 Ga0466960_0356308 3300044901 Bacteria 835
136 Ga0466959_0000532 3300045049 Bacteria 22122
137 Ga0466959_0029438 3300045049 Bacteria 4068
138 Ga0466958_0001234 3300045836 Bacteria 11989
139 Ga0495643_0110272 3300046522 Bacteria 1400
140 Ga0495663_0019201 3300046525 Bacteria 1954
141 Ga0495654_0121460 3300046530 Bacteria 1182
142 Ga0495598_0020451 3300046537 Viruses 1747
143 Ga0495668_0003829 3300046616 Bacteria 11015
144 Ga0495647_0518310 3300046681 Bacteria 556
145 Ga0496116_0000135 3300048919 Bacteria 153165
146 Ga0496117_0011998 3300048920 Bacteria 7698
147 Ga0496118_0571294 3300048921 Bacteria 547
148 Ga0496119_0017949 3300048922 Bacteria 5293
149 Ga0496119_0207296 3300048922 Bacteria 1011
150 Ga0496120_0009086 3300048923 Bacteria 7094
151 Ga0496120_0197713 3300048923 Bacteria 975
152 Ga0496121_0000003 3300048924 Bacteria 1191431
153 Ga0496121_0000400 3300048924 Bacteria 86667
154 Ga0496122_0057827 3300048925 Plasmid 2875
155 Ga0496122_0110185 3300048925 Bacteria 1810
156 Ga0496123_0065774 3300048926 Bacteria 2301
157 Ga0496123_0128906 3300048926 Bacteria 1406
158 Ga0496124_0000091 3300048927 Bacteria 189706
159 Ga0496125_0000170 3300048928 Bacteria 145369
160 Ga0496125_0113251 3300048928 Bacteria 1957
161 Ga0496126_0000129 3300048929 Bacteria 174059
162 Ga0496126_0501426 3300048929 Bacteria 970
163 Ga0501290_001825 3300049513 Bacteria 2822
164 Ga0501031_0025299 3300049568 Bacteria 3873
165 Ga0501033_0000973 3300049570 Bacteria 25988
166 Ga0501036_0411798 3300049572 Unclassified 1127
167 Ga0501275_000015 3300049772 Bacteria 20363
168 Ga0501035_0063107 3300049822 Bacteria 3296
169 nmdc:mga00v17_3476_c1 3300050491 Bacteria 8156
170 nmdc:mga0yw44_401028_c1 3300050492 Unclassified 927
171 nmdc:mga08y16_209793_c1 3300050511 Bacteria 2017
172 Ga0500646_0166547 3300053090 Bacteria 739
173 Ga0500607_267534 3300053121 Bacteria 663
174 Ga0500618_011540 3300053125 Bacteria 2340
175 Ga0500618_018554 3300053125 Bacteria 1719
176 Ga0500618_024179 3300053125 Bacteria 1464
177 Ga0500655_033050 3300053133 Bacteria 1000
178 Ga0500573_0045739 3300053140 Bacteria 2523
179 Ga0500622_0005349 3300053156 Bacteria 7732
180 Ga0500634_0000865 3300053161 Bacteria 10773
181 Ga0500636_0000001 3300053177 Bacteria 324086
182 Ga0500637_0364940 3300053178 Unclassified 763
183 Ga0500565_011708 3300053734 Bacteria 919
184 Ga0466962_0001935 3300061719 Bacteria 9752

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049822 Ga0501035_0063107 Ga0501035_0063107_2878_3264 128
2 3300013104 Ga0157370_10050892 Ga0157370_100508923 136
3 3300015684 Ga0183365_10006 Ga0183365_10006128 136
4 3300003320 rootH2_10083861 rootH2_100838612 137
5 3300026078 Ga0207702_10173748 Ga0207702_101737482 137
6 3300003323 rootH1_10021322 rootH1_100213223 139
7 3300044656 Ga0466969_0000233 Ga0466969_0000233_10852_11271 139
8 3300044684 Ga0466966_0000394 Ga0466966_0000394_21582_22001 139
9 3300044693 Ga0466961_0002305 Ga0466961_0002305_2115_2534 139
10 3300044694 Ga0466963_0039942 Ga0466963_0039942_45_464 139
11 3300044719 Ga0466971_0001686 Ga0466971_0001686_1850_2269 139
12 3300044765 Ga0466970_0049889 Ga0466970_0049889_642_1061 139
13 3300044842 Ga0466957_0001431 Ga0466957_0001431_303_722 139
14 3300045049 Ga0466959_0000532 Ga0466959_0000532_16750_17169 139
15 3300045836 Ga0466958_0001234 Ga0466958_0001234_6863_7282 139
16 3300061719 Ga0466962_0001935 Ga0466962_0001935_1723_2142 139
17 3300003322 rootL2_10013534 rootL2_100135342 140
18 3300003323 rootH1_10106295 rootH1_101062952 140
19 3300003323 rootH1_10244582 rootH1_102445823 140
20 3300029957 Ga0265324_10074221 Ga0265324_100742213 140
21 3300037471 Ga0395905_0000070 Ga0395905_0000070_80914_81336 140
22 3300044693 Ga0466961_0152698 Ga0466961_0152698_501_923 140
23 3300044901 Ga0466960_0356308 Ga0466960_0356308_86_508 140
24 3300045049 Ga0466959_0029438 Ga0466959_0029438_1394_1816 140
25 3300049572 Ga0501036_0411798 Ga0501036_0411798_306_728 140
26 3300042876 Ga0451577_0009105 Ga0451577_0009105_5721_6194 141
27 3300053178 Ga0500637_0364940 Ga0500637_0364940_245_679 141
28 3300049568 Ga0501031_0025299 Ga0501031_0025299_1867_2307 142
29 3300049570 Ga0501033_0000973 Ga0501033_0000973_7600_8040 142
30 iso_pu_bacteria 2643221568 2643853663 142
31 iso_pu_bacteria 2919166419 2919168092 142
32 3300003323 rootH1_10174146 rootH1_101741464 143
33 3300005440 Ga0070705_100403059 Ga0070705_1004030591 143
34 3300013100 Ga0157373_10153625 Ga0157373_101536252 143
35 3300025299 Ga0209256_1062584 Ga0209256_10625841 143
36 3300025919 Ga0207657_10999679 Ga0207657_109996791 143
37 3300025935 Ga0207709_10676541 Ga0207709_106765412 143
38 3300041494 Ga0451837_0539616 Ga0451837_0539616_227_670 143
39 3300048919 Ga0496116_0000135 Ga0496116_0000135_91737_92180 143
40 3300048921 Ga0496118_0571294 Ga0496118_0571294_44_487 143
41 3300048922 Ga0496119_0207296 Ga0496119_0207296_426_869 143
42 3300048925 Ga0496122_0110185 Ga0496122_0110185_262_705 143
43 3300048926 Ga0496123_0065774 Ga0496123_0065774_1581_2024 143
44 3300048927 Ga0496124_0000091 Ga0496124_0000091_41124_41567 143
45 3300048929 Ga0496126_0000129 Ga0496126_0000129_37526_37969 143
46 3300049513 Ga0501290_001825 Ga0501290_001825_961_1407 143
47 3300049772 Ga0501275_000015 Ga0501275_000015_3829_4275 143
48 3300053177 Ga0500636_0000001 Ga0500636_0000001_86552_86998 143
49 iso_pu_bacteria 2773857925 2774870708 143
50 iso_pu_bacteria 2882456835 2882459583 143
51 iso_pu_bacteria 2929138655 2929141249 143
52 3300005293 Ga0065715_10585199 Ga0065715_105851992 144
53 3300006051 Ga0075364_10021635 Ga0075364_100216352 144
54 3300009093 Ga0105240_10883894 Ga0105240_108838941 144
55 3300041406 Ga0439439_0001481 Ga0439439_0001481_1566_2009 144
56 3300041413 Ga0439465_0046290 Ga0439465_0046290_847_1290 144
57 3300042015 Ga0439462_0020586 Ga0439462_0020586_1244_1687 144
58 3300042435 Ga0439434_0119965 Ga0439434_0119965_51_494 144
59 3300048920 Ga0496117_0011998 Ga0496117_0011998_3201_3668 144
60 3300048923 Ga0496120_0009086 Ga0496120_0009086_1551_2018 144
61 3300048924 Ga0496121_0000003 Ga0496121_0000003_859959_860426 144
62 3300048925 Ga0496122_0057827 Ga0496122_0057827_1657_2124 144
63 3300048928 Ga0496125_0000170 Ga0496125_0000170_56132_56599 144
64 3300050491 nmdc:mga00v17_3476_c1 nmdc:mga00v17_3476_c1_4721_5188 144
65 3300050492 nmdc:mga0yw44_401028_c1 nmdc:mga0yw44_401028_c1_336_803 144
66 iso_pu_bacteria 2558860983 2561466305 144
67 3300013297 Ga0157378_10065406 Ga0157378_100654063 145
68 3300025986 Ga0207658_10486177 Ga0207658_104861772 145
69 3300031712 Ga0265342_10007300 Ga0265342_100073005 145
70 iso_pu_bacteria 8018150411 8018150869 145
71 3300003354 JGI25160J50197_1009015 JGI25160J50197_10090152 146
72 3300003792 Ga0055540_1004238 Ga0055540_10042385 146
73 3300005354 Ga0070675_100420265 Ga0070675_1004202652 146
74 3300005367 Ga0070667_100257074 Ga0070667_1002570743 146
75 3300005459 Ga0068867_100332956 Ga0068867_1003329561 146
76 3300005543 Ga0070672_100177630 Ga0070672_1001776302 146
77 3300006177 Ga0075362_10746699 Ga0075362_107466991 146
78 3300009545 Ga0105237_10000020 Ga0105237_1000002049 146
79 3300013306 Ga0163162_10269160 Ga0163162_102691603 146
80 3300013308 Ga0157375_10170663 Ga0157375_101706633 146
81 3300014325 Ga0163163_11825945 Ga0163163_118259451 146
82 3300014326 Ga0157380_10237248 Ga0157380_102372481 146
83 3300025914 Ga0207671_10000010 Ga0207671_10000010178 146
84 3300025926 Ga0207659_10851295 Ga0207659_108512952 146
85 3300025940 Ga0207691_10187870 Ga0207691_101878701 146
86 3300025981 Ga0207640_11652417 Ga0207640_116524171 146
87 3300028794 Ga0307515_10000666 Ga0307515_1000066620 146
88 3300031247 Ga0265340_10021988 Ga0265340_100219882 146
89 3300031249 Ga0265339_10061548 Ga0265339_100615482 146
90 3300031548 Ga0307408_101214808 Ga0307408_1012148081 146
91 3300031548 Ga0307408_101702199 Ga0307408_1017021991 146
92 3300031595 Ga0265313_10028471 Ga0265313_100284712 146
93 3300031712 Ga0265342_10047269 Ga0265342_100472693 146
94 3300031730 Ga0307516_10467139 Ga0307516_104671392 146
95 3300031731 Ga0307405_11009550 Ga0307405_110095502 146
96 3300031911 Ga0307412_10708489 Ga0307412_107084891 146
97 3300032005 Ga0307411_11261473 Ga0307411_112614732 146
98 3300037418 Ga0395900_0279993 Ga0395900_0279993_533_988 146
99 3300037466 Ga0395898_0513634 Ga0395898_0513634_194_649 146
100 3300037471 Ga0395905_0007826 Ga0395905_0007826_10088_10543 146
101 3300037471 Ga0395905_0377876 Ga0395905_0377876_428_883 146
102 3300038443 Ga0395901_0137333 Ga0395901_0137333_2008_2463 146
103 3300046522 Ga0495643_0110272 Ga0495643_0110272_510_962 146
104 3300046530 Ga0495654_0121460 Ga0495654_0121460_559_1017 146
105 3300046537 Ga0495598_0020451 Ga0495598_0020451_145_600 146
106 3300053090 Ga0500646_0166547 Ga0500646_0166547_209_667 146
107 3300053121 Ga0500607_267534 Ga0500607_267534_15_467 146
108 3300053125 Ga0500618_011540 Ga0500618_011540_509_967 146
109 3300053125 Ga0500618_018554 Ga0500618_018554_655_1113 146
110 3300053125 Ga0500618_024179 Ga0500618_024179_753_1205 146
111 3300053133 Ga0500655_033050 Ga0500655_033050_120_578 146
112 3300053140 Ga0500573_0045739 Ga0500573_0045739_1458_1922 146
113 3300053161 Ga0500634_0000865 Ga0500634_0000865_1830_2297 146
114 3300053734 Ga0500565_011708 Ga0500565_011708_335_802 146
115 iso_pu_bacteria 2524614729 2525557213 146
116 iso_pu_bacteria 2627854209 2630648809 146
117 iso_pu_bacteria 2643221558 2643812283 146
118 iso_pu_bacteria 2751185800 2753358303 146
119 iso_pu_bacteria 2758568016 2758638927 146
120 iso_pu_bacteria 2854911287 2854915667 146
121 3300005338 Ga0068868_100428050 Ga0068868_1004280502 147
122 3300005340 Ga0070689_101150166 Ga0070689_1011501661 147
123 3300005353 Ga0070669_101488131 Ga0070669_1014881311 147
124 3300005367 Ga0070667_100414699 Ga0070667_1004146992 147
125 3300005543 Ga0070672_100030887 Ga0070672_1000308873 147
126 3300005578 Ga0068854_100723501 Ga0068854_1007235011 147
127 3300005617 Ga0068859_100151174 Ga0068859_1001511741 147
128 3300005618 Ga0068864_101691625 Ga0068864_1016916252 147
129 3300005834 Ga0068851_10694221 Ga0068851_106942211 147
130 3300006881 Ga0068865_100966784 Ga0068865_1009667841 147
131 3300006931 Ga0097620_100151172 Ga0097620_1001511721 147
132 3300009093 Ga0105240_10011164 Ga0105240_1001116413 147
133 3300009098 Ga0105245_10145687 Ga0105245_101456872 147
134 3300009098 Ga0105245_11374930 Ga0105245_113749302 147
135 3300009148 Ga0105243_10086937 Ga0105243_100869373 147
136 3300009174 Ga0105241_10509063 Ga0105241_105090632 147
137 3300009177 Ga0105248_10210892 Ga0105248_102108921 147
138 3300010375 Ga0105239_10106759 Ga0105239_101067592 147
139 3300013296 Ga0157374_10113950 Ga0157374_101139503 147
140 3300013296 Ga0157374_10638156 Ga0157374_106381562 147
141 3300013306 Ga0163162_10701585 Ga0163162_107015851 147
142 3300013308 Ga0157375_10041724 Ga0157375_100417242 147
143 3300013308 Ga0157375_10919448 Ga0157375_109194482 147
144 3300025913 Ga0207695_10010977 Ga0207695_1001097711 147
145 3300025927 Ga0207687_10467688 Ga0207687_104676881 147
146 3300025935 Ga0207709_10173893 Ga0207709_101738931 147
147 3300025940 Ga0207691_10012346 Ga0207691_100123464 147
148 3300025941 Ga0207711_10138478 Ga0207711_101384781 147
149 3300025986 Ga0207658_10195653 Ga0207658_101956532 147
150 3300026023 Ga0207677_10611628 Ga0207677_106116281 147
151 3300026089 Ga0207648_11205461 Ga0207648_112054612 147
152 3300026095 Ga0207676_11724085 Ga0207676_117240851 147
153 3300028794 Ga0307515_10000674 Ga0307515_1000067455 147
154 3300042007 Ga0439449_0012505 Ga0439449_0012505_2205_2663 147
155 3300046681 Ga0495647_0518310 Ga0495647_0518310_18_482 147
156 3300048922 Ga0496119_0017949 Ga0496119_0017949_555_1019 147
157 3300048923 Ga0496120_0197713 Ga0496120_0197713_277_741 147
158 3300048926 Ga0496123_0128906 Ga0496123_0128906_15_479 147
159 3300048928 Ga0496125_0113251 Ga0496125_0113251_845_1309 147
160 3300048929 Ga0496126_0501426 Ga0496126_0501426_258_722 147
161 3300053156 Ga0500622_0005349 Ga0500622_0005349_6531_6986 147
162 3300009094 Ga0111539_10133986 Ga0111539_101339863 148
163 3300050511 nmdc:mga08y16_209793_c1 nmdc:mga08y16_209793_c1_998_1465 148
164 3300031548 Ga0307408_100101845 Ga0307408_1001018452 151
165 3300031901 Ga0307406_10020897 Ga0307406_100208974 151
166 3300032005 Ga0307411_10252170 Ga0307411_102521703 151
167 3300041404 Ga0439436_0009760 Ga0439436_0009760_1359_1823 151
168 3300031901 Ga0307406_10083327 Ga0307406_100833273 156
169 iso_pu_bacteria 2941489479 2941493567 160
170 iso_pu_bacteria 2995948881 2995949172 160
171 3300003322 rootL2_10133970 rootL2_101339703 161
172 3300003323 rootH1_10083468 rootH1_100834682 161
173 3300003771 Ga0055526_1000003 Ga0055526_1000003343 161
174 3300003773 Ga0055537_1000153 Ga0055537_100015329 161
175 3300003775 Ga0055524_1000002 Ga0055524_100000223 161
176 3300003784 Ga0055534_1000050 Ga0055534_100005059 161
177 3300003790 Ga0055528_1000001 Ga0055528_100000123 161
178 3300005367 Ga0070667_100306194 Ga0070667_1003061943 161
179 3300015689 Ga0183360_10002 Ga0183360_10002461 161
180 3300025263 Ga0209565_1000002 Ga0209565_1000002555 161
181 3300025263 Ga0209565_1005090 Ga0209565_10050904 161
182 3300025273 Ga0209673_1000002 Ga0209673_1000002555 161
183 3300025291 Ga0209675_1000002 Ga0209675_1000002555 161
184 3300025295 Ga0209564_1000004 Ga0209564_1000004556 161
185 3300025299 Ga0209256_1000004 Ga0209256_1000004556 161
186 3300048924 Ga0496121_0000400 Ga0496121_0000400_63470_63985 161
187 3300031911 Ga0307412_10735059 Ga0307412_107350591 165
188 3300041407 Ga0439447_006804 Ga0439447_006804_2994_3530 165
189 iso_pu_bacteria 2643221593 2643975283 165
190 3300046525 Ga0495663_0019201 Ga0495663_0019201_80_619 166
191 3300046616 Ga0495668_0003829 Ga0495668_0003829_7708_8247 166
192 3300003187 JGI25151J46595_10000088 JGI25151J46595_1000008877 169
193 3300003215 JGI25153J46596_10045612 JGI25153J46596_100456122 169
194 3300005335 Ga0070666_10838161 Ga0070666_108381611 169
195 3300005548 Ga0070665_100152652 Ga0070665_1001526521 169
196 3300025245 Ga0207425_1001433 Ga0207425_10014332 169
197 3300025294 Ga0209025_1000134 Ga0209025_100013491 169
198 3300025297 Ga0209758_1012967 Ga0209758_10129673 169
199 3300028379 Ga0268266_10682564 Ga0268266_106825642 169

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02082

Rrf2

Iron-dependent Transcriptional regulator

2

149

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
7kym-assembly1.cif.gz_A crystal structure of the marr family transcriptional regulator from bradyrhizobium japonicum 0.9472 4 66
7wze-assembly1.cif.gz_Y structure of transcriptional regulator from bacillus subtilis (strain 168) 0.9171 35 77
3nrv-assembly2.cif.gz_B crystal structure of marr/emrr family transcriptional regulator from acinetobacter sp. adp1 0.9086 6 77
3nrv-assembly1.cif.gz_A crystal structure of marr/emrr family transcriptional regulator from acinetobacter sp. adp1 0.9083 6 77
2lnb-assembly1.cif.gz_A solution nmr structure of n-terminal domain (6-74) of human zbp1 protein, northeast structural genomics consortium target hr8174a. 0.901 2 80
ID Description Score Start End Superfamily
af_Q8LPK6_359_447_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.982 5 68 1.10.10.10
af_Q57693_7_69_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9245 34 77 1.10.10.10
af_Q4DZU8_467_618_3.30.230.130 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2;Cullin; Chain C, Domain 2 0.9194 34 78 3.30.230.130
af_Q2G1T7_130_245_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9128 5 71 1.10.10.10
3nrvB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9081 5 77 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A0S4Q4Q6-F1-model_v4 Cysteine metabolism repressor 0.9814 34 142 GO:0003700
GO:0005829
AF-A0A1T5G821-F1-model_v4 Transcriptional regulator, BadM/Rrf2 family 0.9775 34 145 GO:0003700
GO:0005829
AF-A0A3C1WR45-F1-model_v4 Transcriptional regulator 0.9729 1 146 GO:0003700
GO:0005829
AF-A0A4P5QVE9-F1-model_v4 Rrf2 family transcriptional regulator 0.9671 1 146 GO:0003700
GO:0005829
AF-A0A317ETP0-F1-model_v4 Transcriptional regulator 0.9663 1 146 GO:0003700
GO:0005829

Feature Viewer

pLDDT pTM Quality
82.46 0.76 High
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Predicted Structure (AlphaFold2)

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