F305857

General Info

Members Datasets Scaffolds Average Seq Length
199 125 398 323

Family's Representative Sequence

Representative Sequence 3300025907|Ga0207645_10006673|Ga0207645_100066737
Length 385
Sequence VFGNWHATALFWKPQVALLVNEMTSLCSLDRAPTRQENARRLPRAFPYSGEASRKHSMRRRQFMLQSVVASGAPVFAITARPQPQRSLPIIGFLGSTAPAPELVKSFLVGLSGGGVEVGRDVAIEYRWAHNRMDGLAPLVAELLHQRAAILVTIGGIPVAKAAKAATRTIPILFEVGRDPVASGLVTSLNRPGGNATGVHMLTSSLNAKRLELLRELVPRATTVAVLTNPTNIGQPAVEREIRTVAPTFGFEPLIARASSEAEIETAFEMFVDRKVGALVVANDAFFNSRRAQLVALTNLHSLPTVFEWREFAAEGGLMSYGTDLSDVLRQLGNYAARVLKGAKPEDLPVLQPTRFELVINERTARALGLTIPQALLLRASEIVR

Samples

Sample ID Description Type Environment
1 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
17 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
18 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
19 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
22 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
23 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
24 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
25 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
26 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
27 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
28 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
29 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
30 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
31 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
33 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
38 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
43 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
46 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
47 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
48 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
49 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
50 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
64 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
65 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
66 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
67 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
68 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
69 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
70 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
71 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
72 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
73 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
74 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
75 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
76 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
77 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
78 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
79 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
80 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
81 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
82 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
83 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
84 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
85 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
86 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
87 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
88 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
89 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
90 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
91 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
92 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
93 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
94 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
95 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
96 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
97 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
98 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
99 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
100 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
101 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
102 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
103 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
104 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
105 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
106 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
107 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
108 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
109 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
110 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
111 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
112 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
113 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
114 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
115 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
116 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
117 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
118 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
119 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
120 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
121 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
122 3300053733 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 endosphere Metagenome Endosphere
123 2513237092 Bradyrhizobium sp. WSM1743 Isolate Nodule
124 2791355196 Bradyrhizobium sp. Y36 Isolate Nodule
125 3005483717 Bradyrhizobium agreste CNPSo 4010 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.49
Metatranscriptomes 0
Isolates 1.51

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.53
Nodule 1.51
Rhizoplane 22.11
Rhizosphere 67.34
Stem 0
Stem Tuber 0
Unclassified 13.07

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207645_10006673 3300025907 Bacteria 8242
2 rootH2_10220509 3300003320 Bacteria 1208
3 rootL2_10326830 3300003322 Bacteria 1192
4 Ga0070676_10003904 3300005328 Bacteria 7824
5 Ga0070683_100310344 3300005329 Bacteria 1501
6 Ga0068868_100058412 3300005338 Unclassified 3048
7 Ga0070671_100107648 3300005355 Bacteria 2340
8 Ga0070709_10100099 3300005434 Bacteria 1929
9 Ga0070709_10272638 3300005434 Unclassified 1227
10 Ga0070714_100158284 3300005435 Unclassified 2047
11 Ga0070713_100159148 3300005436 Unclassified 2014
12 Ga0070713_100501187 3300005436 Bacteria 1146
13 Ga0070711_100027683 3300005439 Bacteria 3723
14 Ga0070681_10346590 3300005458 Bacteria 1396
15 Ga0070706_100100657 3300005467 Bacteria 2685
16 Ga0070707_100185142 3300005468 Unclassified 2030
17 Ga0070698_100260792 3300005471 Bacteria 1665
18 Ga0070698_100329488 3300005471 Bacteria 1458
19 Ga0070699_100005211 3300005518 Bacteria 11426
20 Ga0070664_100152564 3300005564 Bacteria 2040
21 Ga0068859_100792367 3300005617 Bacteria 1036
22 Ga0068863_100048812 3300005841 Bacteria 4013
23 Ga0068863_100492944 3300005841 Unclassified 1206
24 Ga0081455_10057274 3300005937 Bacteria 3303
25 Ga0081455_10118337 3300005937 Bacteria 2092
26 Ga0081540_1008840 3300005983 Bacteria 6994
27 Ga0070717_10073123 3300006028 Bacteria 2864
28 Ga0070717_10091514 3300006028 Bacteria 2568
29 Ga0070717_10137583 3300006028 Unclassified 2104
30 Ga0070717_10259135 3300006028 Unclassified 1538
31 Ga0075365_10046983 3300006038 Bacteria 2837
32 Ga0075365_10088998 3300006038 Bacteria 2101
33 Ga0070716_100267087 3300006173 Unclassified 1174
34 Ga0070712_100074238 3300006175 Bacteria 2442
35 Ga0070712_100366446 3300006175 Bacteria 1183
36 Ga0075366_10022157 3300006195 Bacteria 3694
37 Ga0075428_100093406 3300006844 Bacteria 3280
38 Ga0075431_100349939 3300006847 Bacteria 1486
39 Ga0075431_100449807 3300006847 Bacteria 1284
40 Ga0075433_10012555 3300006852 Bacteria 6848
41 Ga0075434_100002827 3300006871 Bacteria 15376
42 Ga0075434_100071076 3300006871 Bacteria 3471
43 Ga0075434_100110517 3300006871 Bacteria 2759
44 Ga0075434_100258032 3300006871 Bacteria 1762
45 Ga0097620_100792288 3300006931 Bacteria 1036
46 Ga0075435_100004580 3300007076 Bacteria 9518
47 Ga0075435_100164990 3300007076 Bacteria 1867
48 Ga0099795_10041309 3300007788 Bacteria 1642
49 Ga0099795_10061187 3300007788 Bacteria 1397
50 Ga0111539_10030411 3300009094 Bacteria 6563
51 Ga0111539_10285540 3300009094 Bacteria 1920
52 Ga0111539_10657708 3300009094 Bacteria 1220
53 Ga0105245_10210018 3300009098 Bacteria 1873
54 Ga0105245_10322804 3300009098 Bacteria 1521
55 Ga0114129_10214279 3300009147 Unclassified 2602
56 Ga0114129_10275837 3300009147 Bacteria 2248
57 Ga0105249_10453340 3300009553 Viruses 1322
58 Ga0099796_10011674 3300010159 Bacteria 2458
59 Ga0105239_10137888 3300010375 Bacteria 2716
60 Ga0105246_10061510 3300011119 Bacteria 2613
61 Ga0157374_10272494 3300013296 Unclassified 1669
62 Ga0163162_10180795 3300013306 Bacteria 2235
63 Ga0163162_10760956 3300013306 Unclassified 1087
64 Ga0157375_10221139 3300013308 Bacteria 2052
65 Ga0157375_10499987 3300013308 Unclassified 1380
66 Ga0163163_10145082 3300014325 Bacteria 2417
67 Ga0157379_10050510 3300014968 Bacteria 3712
68 Ga0157379_10297039 3300014968 Bacteria 1472
69 Ga0157376_10015162 3300014969 Bacteria 5813
70 Ga0182007_10042291 3300015262 Bacteria 1517
71 Ga0214544_1023821 3300021320 Bacteria 3324
72 Ga0213876_10012497 3300021384 Bacteria 4519
73 Ga0207699_10203681 3300025906 Bacteria 1342
74 Ga0207707_10289383 3300025912 Bacteria 1418
75 Ga0207693_10296922 3300025915 Bacteria 1266
76 Ga0207693_10349214 3300025915 Bacteria 1158
77 Ga0207663_10088590 3300025916 Unclassified 2047
78 Ga0207650_10158494 3300025925 Bacteria 1791
79 Ga0207687_10187679 3300025927 Bacteria 1606
80 Ga0207700_10254247 3300025928 Bacteria 1502
81 Ga0207664_10539417 3300025929 Bacteria 1046
82 Ga0207644_10111547 3300025931 Bacteria 2069
83 Ga0207644_10339933 3300025931 Bacteria 1217
84 Ga0207712_10268825 3300025961 Viruses 1386
85 Ga0207677_10085997 3300026023 Unclassified 2271
86 Ga0207678_10147290 3300026067 Bacteria 2009
87 Ga0207675_100155975 3300026118 Bacteria 2176
88 Ga0265325_10007805 3300031241 Bacteria 6372
89 Ga0373951_0047943 3300035091 Bacteria 1045
90 Ga0373945_0034468 3300035116 Bacteria 1804
91 Ga0373943_0002805 3300035170 Bacteria 7921
92 Ga0373946_0027088 3300035171 Bacteria 2265
93 Ga0373931_0005646 3300035691 Bacteria 5805
94 Ga0373935_0026366 3300035692 Bacteria 3586
95 Ga0373935_0033512 3300035692 Unclassified 3197
96 Ga0373927_0004182 3300035695 Bacteria 10144
97 Ga0373927_0015048 3300035695 Bacteria 5114
98 Ga0373933_0246853 3300035724 Bacteria 1149
99 Ga0373947_0000377 3300035725 Bacteria 25225
100 Ga0373947_0005966 3300035725 Bacteria 7099
101 Ga0373947_0172687 3300035725 Bacteria 1403
102 Ga0373925_0072575 3300037068 Bacteria 2604
103 Ga0373925_0082346 3300037068 Unclassified 2449
104 Ga0373925_0142072 3300037068 Unclassified 1879
105 Ga0436365_0732183 3300039437 Bacteria 4579
106 Ga0495603_0105501 3300046455 Bacteria 1644
107 Ga0495629_0001561 3300046459 Bacteria 18004
108 Ga0495629_0033092 3300046459 Bacteria 3657
109 Ga0495580_0326324 3300046472 Unclassified 1043
110 Ga0495582_0002890 3300046473 Bacteria 9608
111 Ga0495618_0199148 3300046514 Bacteria 1268
112 Ga0495630_0070097 3300046517 Bacteria 2638
113 Ga0495666_0104849 3300046526 Bacteria 1331
114 Ga0495640_0024316 3300046533 Bacteria 4409
115 Ga0495598_0109616 3300046537 Bacteria 924
116 Ga0495634_0127670 3300046642 Bacteria 1623
117 Ga0495658_0001500 3300046683 Bacteria 12237
118 Ga0495624_0021615 3300046690 Bacteria 4264
119 Ga0495581_0004774 3300047315 Bacteria 7830
120 Ga0495676_0039340 3300047321 Bacteria 3917
121 Ga0495676_0084850 3300047321 Bacteria 2388
122 Ga0495680_0084904 3300047322 Bacteria 2385
123 Ga0495680_0111163 3300047322 Unclassified 2030
124 Ga0495684_0002474 3300047471 Bacteria 14722
125 Ga0495684_0235796 3300047471 Bacteria 1336
126 Ga0496100_0004428 3300048903 Bacteria 7443
127 Ga0496100_0158487 3300048903 Bacteria 1621
128 Ga0496100_0393727 3300048903 Bacteria 1054
129 Ga0496101_0042341 3300048904 Bacteria 3250
130 Ga0496101_0064323 3300048904 Bacteria 2672
131 Ga0496101_0526156 3300048904 Bacteria 935
132 Ga0496103_0002130 3300048906 Bacteria 12597
133 Ga0496104_0012199 3300048907 Bacteria 7721
134 Ga0496104_0018052 3300048907 Bacteria 6432
135 Ga0496104_0027123 3300048907 Bacteria 5298
136 Ga0496104_0035224 3300048907 Bacteria 4674
137 Ga0496104_0063693 3300048907 Bacteria 3497
138 Ga0496104_0093133 3300048907 Bacteria 2882
139 Ga0496104_0121244 3300048907 Bacteria 2510
140 Ga0496104_0203060 3300048907 Unclassified 1894
141 Ga0496104_0212266 3300048907 Bacteria 1847
142 Ga0496105_0030808 3300048908 Bacteria 4397
143 Ga0496105_0091668 3300048908 Bacteria 2509
144 Ga0496106_0014331 3300048909 Bacteria 5857
145 Ga0496106_0067932 3300048909 Bacteria 2718
146 Ga0496106_0111786 3300048909 Unclassified 2128
147 Ga0496106_0201748 3300048909 Bacteria 1583
148 Ga0496107_0096513 3300048910 Bacteria 2163
149 Ga0496108_0059424 3300048911 Unclassified 3214
150 Ga0496108_0074560 3300048911 Bacteria 2865
151 Ga0496108_0111754 3300048911 Bacteria 2337
152 Ga0496108_0287252 3300048911 Bacteria 1432
153 Ga0496109_0463338 3300048912 Bacteria 1197
154 Ga0496110_0026295 3300048913 Plasmid 4978
155 Ga0496110_0081153 3300048913 Bacteria 2891
156 Ga0496110_0082700 3300048913 Unclassified 2864
157 Ga0496110_0099871 3300048913 Bacteria 2601
158 Ga0496110_0138521 3300048913 Bacteria 2200
159 Ga0496110_0410702 3300048913 Bacteria 1234
160 Ga0496111_0005690 3300048914 Bacteria 8032
161 Ga0496112_0087036 3300048915 Bacteria 3091
162 Ga0496112_0088554 3300048915 Bacteria 3063
163 Ga0496112_0096712 3300048915 Unclassified 2923
164 Ga0496112_0101582 3300048915 Bacteria 2845
165 Ga0496113_0129867 3300048916 Bacteria 1976
166 Ga0496113_0160739 3300048916 Bacteria 1776
167 Ga0496114_0006973 3300048917 Bacteria 8904
168 Ga0496115_0038311 3300048918 Plasmid 3803
169 Ga0496115_0333984 3300048918 Bacteria 1238
170 Ga0496126_0021799 3300048929 Bacteria 6250
171 Ga0496126_0071803 3300048929 Bacteria 3081
172 nmdc:mga0yw44_17373_c1 3300050492 Bacteria 3913
173 nmdc:mga0yw44_70147_c1 3300050492 Bacteria 2172
174 nmdc:mga05p37_146868_c1 3300050507 Bacteria 2886
175 nmdc:mga05p37_353368_c1 3300050507 Bacteria 1730
176 nmdc:mga0qj67_222728_c1 3300050509 Bacteria 1531
177 nmdc:mga06r32_422312_c1 3300050510 Bacteria 1314
178 nmdc:mga08y16_180577_c1 3300050511 Bacteria 2191
179 nmdc:mga0n895_231160_c1 3300050512 Bacteria 1877
180 nmdc:mga0n895_50733_c1 3300050512 Bacteria 4068
181 nmdc:mga0n895_54653_c1 3300050512 Bacteria 3929
182 nmdc:mga0rr50_48510_c1 3300050513 Bacteria 3139
183 nmdc:mga0rr50_62877_c1 3300050513 Bacteria 2802
184 nmdc:mga0a205_21257_c1 3300050515 Bacteria 6138
185 nmdc:mga0a205_60439_c1 3300050515 Bacteria 3660
186 Ga0495601_0008162 3300053077 Bacteria 6173
187 Ga0495601_0048287 3300053077 Unclassified 2680
188 Ga0495612_0006264 3300053078 Bacteria 4902
189 Ga0495619_0000918 3300053085 Bacteria 19328
190 Ga0495619_0002174 3300053085 Bacteria 12995
191 Ga0500566_0069112 3300053094 Bacteria 1985
192 Ga0500595_012060 3300053119 Bacteria 3353
193 Ga0500595_017824 3300053119 Bacteria 2611
194 Ga0500614_006912 3300053123 Bacteria 2385
195 Ga0500559_0004107 3300053136 Bacteria 6982
196 Ga0500552_000539 3300053733 Bacteria 3520
197 2513628781 2513237092 Bacteria 8341956
198 2793062267 2791355196 Bacteria 7323613
199 3005487304 3005483717 Bacteria 7877331
200 Ga0207645_10006673
201 rootH2_10220509
202 rootL2_10326830
203 Ga0070676_10003904
204 Ga0070683_100310344
205 Ga0068868_100058412
206 Ga0070671_100107648
207 Ga0070709_10100099
208 Ga0070709_10272638
209 Ga0070714_100158284
210 Ga0070713_100159148
211 Ga0070713_100501187
212 Ga0070711_100027683
213 Ga0070681_10346590
214 Ga0070706_100100657
215 Ga0070707_100185142
216 Ga0070698_100260792
217 Ga0070698_100329488
218 Ga0070699_100005211
219 Ga0070664_100152564
220 Ga0068859_100792367
221 Ga0068863_100048812
222 Ga0068863_100492944
223 Ga0081455_10057274
224 Ga0081455_10118337
225 Ga0081540_1008840
226 Ga0070717_10073123
227 Ga0070717_10091514
228 Ga0070717_10137583
229 Ga0070717_10259135
230 Ga0075365_10046983
231 Ga0075365_10088998
232 Ga0070716_100267087
233 Ga0070712_100074238
234 Ga0070712_100366446
235 Ga0075366_10022157
236 Ga0075428_100093406
237 Ga0075431_100349939
238 Ga0075431_100449807
239 Ga0075433_10012555
240 Ga0075434_100002827
241 Ga0075434_100071076
242 Ga0075434_100110517
243 Ga0075434_100258032
244 Ga0097620_100792288
245 Ga0075435_100004580
246 Ga0075435_100164990
247 Ga0099795_10041309
248 Ga0099795_10061187
249 Ga0111539_10030411
250 Ga0111539_10285540
251 Ga0111539_10657708
252 Ga0105245_10210018
253 Ga0105245_10322804
254 Ga0114129_10214279
255 Ga0114129_10275837
256 Ga0105249_10453340
257 Ga0099796_10011674
258 Ga0105239_10137888
259 Ga0105246_10061510
260 Ga0157374_10272494
261 Ga0163162_10180795
262 Ga0163162_10760956
263 Ga0157375_10221139
264 Ga0157375_10499987
265 Ga0163163_10145082
266 Ga0157379_10050510
267 Ga0157379_10297039
268 Ga0157376_10015162
269 Ga0182007_10042291
270 Ga0214544_1023821
271 Ga0213876_10012497
272 Ga0207699_10203681
273 Ga0207707_10289383
274 Ga0207693_10296922
275 Ga0207693_10349214
276 Ga0207663_10088590
277 Ga0207650_10158494
278 Ga0207687_10187679
279 Ga0207700_10254247
280 Ga0207664_10539417
281 Ga0207644_10111547
282 Ga0207644_10339933
283 Ga0207712_10268825
284 Ga0207677_10085997
285 Ga0207678_10147290
286 Ga0207675_100155975
287 Ga0265325_10007805
288 Ga0373951_0047943
289 Ga0373945_0034468
290 Ga0373943_0002805
291 Ga0373946_0027088
292 Ga0373931_0005646
293 Ga0373935_0026366
294 Ga0373935_0033512
295 Ga0373927_0004182
296 Ga0373927_0015048
297 Ga0373933_0246853
298 Ga0373947_0000377
299 Ga0373947_0005966
300 Ga0373947_0172687
301 Ga0373925_0072575
302 Ga0373925_0082346
303 Ga0373925_0142072
304 Ga0436365_0732183
305 Ga0495603_0105501
306 Ga0495629_0001561
307 Ga0495629_0033092
308 Ga0495580_0326324
309 Ga0495582_0002890
310 Ga0495618_0199148
311 Ga0495630_0070097
312 Ga0495666_0104849
313 Ga0495640_0024316
314 Ga0495598_0109616
315 Ga0495634_0127670
316 Ga0495658_0001500
317 Ga0495624_0021615
318 Ga0495581_0004774
319 Ga0495676_0039340
320 Ga0495676_0084850
321 Ga0495680_0084904
322 Ga0495680_0111163
323 Ga0495684_0002474
324 Ga0495684_0235796
325 Ga0496100_0004428
326 Ga0496100_0158487
327 Ga0496100_0393727
328 Ga0496101_0042341
329 Ga0496101_0064323
330 Ga0496101_0526156
331 Ga0496103_0002130
332 Ga0496104_0012199
333 Ga0496104_0018052
334 Ga0496104_0027123
335 Ga0496104_0035224
336 Ga0496104_0063693
337 Ga0496104_0093133
338 Ga0496104_0121244
339 Ga0496104_0203060
340 Ga0496104_0212266
341 Ga0496105_0030808
342 Ga0496105_0091668
343 Ga0496106_0014331
344 Ga0496106_0067932
345 Ga0496106_0111786
346 Ga0496106_0201748
347 Ga0496107_0096513
348 Ga0496108_0059424
349 Ga0496108_0074560
350 Ga0496108_0111754
351 Ga0496108_0287252
352 Ga0496109_0463338
353 Ga0496110_0026295
354 Ga0496110_0081153
355 Ga0496110_0082700
356 Ga0496110_0099871
357 Ga0496110_0138521
358 Ga0496110_0410702
359 Ga0496111_0005690
360 Ga0496112_0087036
361 Ga0496112_0088554
362 Ga0496112_0096712
363 Ga0496112_0101582
364 Ga0496113_0129867
365 Ga0496113_0160739
366 Ga0496114_0006973
367 Ga0496115_0038311
368 Ga0496115_0333984
369 Ga0496126_0021799
370 Ga0496126_0071803
371 nmdc:mga0yw44_17373_c1
372 nmdc:mga0yw44_70147_c1
373 nmdc:mga05p37_146868_c1
374 nmdc:mga05p37_353368_c1
375 nmdc:mga0qj67_222728_c1
376 nmdc:mga06r32_422312_c1
377 nmdc:mga08y16_180577_c1
378 nmdc:mga0n895_231160_c1
379 nmdc:mga0n895_50733_c1
380 nmdc:mga0n895_54653_c1
381 nmdc:mga0rr50_48510_c1
382 nmdc:mga0rr50_62877_c1
383 nmdc:mga0a205_21257_c1
384 nmdc:mga0a205_60439_c1
385 Ga0495601_0008162
386 Ga0495601_0048287
387 Ga0495612_0006264
388 Ga0495619_0000918
389 Ga0495619_0002174
390 Ga0500566_0069112
391 Ga0500595_012060
392 Ga0500595_017824
393 Ga0500614_006912
394 Ga0500559_0004107
395 Ga0500552_000539
396 2513628781
397 2793062267
398 3005487304

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04392

ABC_sub_bind

ABC transporter substrate binding protein

96

384

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
3lkv-assembly1.cif.gz_A-2 crystal structure of conserved domain protein from vibrio cholerae o1 biovar eltor str. n16961 0.9251 25 322
3lkv-assembly1.cif.gz_A-2 crystal structure of conserved domain protein from vibrio cholerae o1 biovar eltor str. n16961 0.9163 25 322
3lft-assembly1.cif.gz_A the crystal structure of the abc domain in complex with l-trp from streptococcus pneumonia to 1.35a 0.9088 26 323
3lft-assembly2.cif.gz_B the crystal structure of the abc domain in complex with l-trp from streptococcus pneumonia to 1.35a 0.9041 28 323
3lft-assembly1.cif.gz_A the crystal structure of the abc domain in complex with l-trp from streptococcus pneumonia to 1.35a 0.9001 26 323
ID Description Score Start End Superfamily
3lkvA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9295 25 293 3.40.50.2300
3lkvA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9118 25 293 3.40.50.2300
3lftA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8682 146 323 3.40.50.2300
3lkvA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8655 146 322 3.40.50.2300
3lftA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8514 146 323 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A2V6ZIS3-F1-model_v4 ABC transporter substrate-binding protein 0.9854 229 324
AF-A0A534TVN5-F1-model_v4 ABC transporter substrate-binding protein 0.9764 226 324
AF-A0A2V7D4C4-F1-model_v4 ABC transporter substrate-binding protein 0.976 226 324
AF-A0A537H7S6-F1-model_v4 ABC transporter substrate-binding protein 0.975 226 324
AF-A0A7V9HTZ8-F1-model_v4 ABC transporter substrate-binding protein 0.9739 226 324

Map