F305737

General Info

Members Datasets Scaffolds Average Seq Length
199 78 188 629

Family's Representative Sequence

Representative Sequence 3300009147|Ga0114129_10002170|Ga0114129_1000217014
Length 718
Sequence MARFGRDHRRLFPASSPNHIVTSGLGTNNSIAIISVWGDLVHLGLEQLVQISTGNQIYAENYSMIRHEDNLPTSIINRDSDFKPAWTLRSWFIGRPLSTADAPDQTIGKAIGLAVFASDALSSTAYATQEILVILAAAGTMAFGLVFPISLAIVLLLGIVAVSYEQTIHAYPGGGGAYIVARDNLGEFPALIAGAALLTDYVLTVSVSIASGVAQITSAFPILYDYRVLLSVGFILFVMMMNLRGVKESGAAFAIPTYFFVILMFVTVGLGLFRLFITNTLGTVVDPPELELLEGISKITPFLILHAFASGTTALTGVEAISNGITAFKEPRSRNAGVTLIWMALILGSLFLGISYLAKEISVIPSESETIISQLARTIFAGRGILYLMLMGATTVILIMAANTAFADFPRLGALVAKDGFLPRQLTYRGSRLVYSGGIVVLACIASIILIIFKASVTRLIPLYAIGVFLSFTLSQGGMALRWNKIGKLKPGEVKSERGSTLRFVKDWPIKMLINGFGAVCTAVVMMVFAVTKFYDGAYVVLILIPLLVWIFWGIHLHYRGLAKKLSLDNFVVTPPHTTRHRVIMPVSGVHQGTLAALRYARILSDDVTAVYVMIEPTESEKIRKKWETWGEGVRMVMLNSPYRLLLEPLLEYITDIGRQRQPGETITIVVPEFVSTNRMAAVLHMNTAGLLRSQLKRQHGIIIVSVPYHVHEENGRH

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
7 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
8 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
9 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
14 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
15 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
16 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
17 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
18 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
19 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
20 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
21 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
22 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
23 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
24 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
25 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
26 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
27 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
28 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
29 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
30 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
31 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
32 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
37 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
38 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
39 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
51 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
52 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
53 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
54 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
55 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
56 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
57 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
58 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
59 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
60 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
61 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
62 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
63 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
64 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
65 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
66 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
67 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
68 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
69 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
70 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
71 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
72 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
73 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
74 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
75 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
76 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
77 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
78 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.51
Nodule 0
Rhizoplane 0
Rhizosphere 98.49
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1033251 2162886007 Bacteria 14331
2 SwRhRL2b_contig_597674 2162886007 Bacteria 9962
3 JGI25406J46586_10000422 3300003203 Bacteria 19494
4 Ga0065704_10070402 3300005289 Bacteria 26643
5 Ga0065707_10001772 3300005295 Bacteria 5916
6 Ga0065707_10006608 3300005295 Bacteria 2880
7 Ga0065707_10082149 3300005295 Bacteria 20712
8 Ga0065707_10083426 3300005295 Bacteria 9239
9 Ga0065707_10084352 3300005295 Bacteria 7325
10 Ga0065707_10085236 3300005295 Bacteria 6331
11 Ga0065707_10087037 3300005295 Bacteria 5197
12 Ga0065707_10091649 3300005295 Bacteria 3901
13 Ga0070689_100008466 3300005340 Bacteria 7245
14 Ga0070689_100060322 3300005340 Unclassified 2949
15 Ga0070691_10015793 3300005341 Bacteria 3470
16 Ga0070691_10018195 3300005341 Bacteria 3238
17 Ga0070667_100047507 3300005367 Bacteria 3611
18 Ga0070703_10008040 3300005406 Bacteria 2964
19 Ga0070694_100006707 3300005444 Bacteria 6994
20 Ga0070706_100083799 3300005467 Bacteria 2954
21 Ga0070707_100051923 3300005468 Unclassified 3930
22 Ga0070707_100097044 3300005468 Bacteria 2854
23 Ga0070698_100015062 3300005471 Bacteria 8175
24 Ga0070698_100044726 3300005471 Bacteria 4531
25 Ga0070698_100091360 3300005471 Bacteria 3027
26 Ga0070698_100123439 3300005471 Unclassified 2548
27 Ga0070699_100008167 3300005518 Bacteria 9081
28 Ga0070699_100025951 3300005518 Bacteria 5053
29 Ga0070699_100064285 3300005518 Bacteria 3183
30 Ga0070699_100087125 3300005518 Bacteria 2725
31 Ga0070697_100010388 3300005536 Bacteria 7265
32 Ga0070695_100011064 3300005545 Bacteria 5394
33 Ga0070696_100017004 3300005546 Bacteria 4906
34 Ga0070704_100052432 3300005549 Bacteria 2878
35 Ga0070702_100045229 3300005615 Bacteria 2489
36 Ga0068859_100006665 3300005617 Bacteria 11725
37 Ga0068859_100007883 3300005617 Bacteria 10807
38 Ga0068859_100008329 3300005617 Bacteria 10508
39 Ga0068858_100029314 3300005842 Bacteria 5110
40 Ga0068862_100020193 3300005844 Bacteria 5564
41 Ga0081455_10004400 3300005937 Bacteria 15835
42 Ga0081538_10003416 3300005981 Bacteria 15028
43 Ga0081538_10011146 3300005981 Bacteria 7305
44 Ga0081539_10000773 3300005985 Bacteria 62951
45 Ga0081539_10004539 3300005985 Bacteria 15230
46 Ga0075362_10016351 3300006177 Bacteria 3036
47 Ga0075366_10005154 3300006195 Bacteria 7070
48 Ga0075428_100006886 3300006844 Bacteria 12631
49 Ga0075428_100037746 3300006844 Bacteria 5316
50 Ga0075428_100144886 3300006844 Bacteria 2582
51 Ga0075428_100163528 3300006844 Bacteria 2415
52 Ga0075431_100022524 3300006847 Bacteria 6441
53 Ga0075431_100050826 3300006847 Bacteria 4274
54 Ga0075431_100058874 3300006847 Bacteria 3964
55 Ga0075431_100074291 3300006847 Bacteria 3508
56 Ga0075431_100090856 3300006847 Bacteria 3152
57 Ga0075433_10000962 3300006852 Bacteria 20381
58 Ga0075434_100012440 3300006871 Bacteria 8069
59 Ga0075434_100110113 3300006871 Bacteria 2765
60 Ga0075429_100003526 3300006880 Bacteria 13330
61 Ga0075429_100005699 3300006880 Bacteria 10743
62 Ga0075429_100014908 3300006880 Bacteria 6741
63 Ga0075429_100052899 3300006880 Bacteria 3532
64 Ga0075429_100093608 3300006880 Bacteria 2621
65 Ga0097620_100006665 3300006931 Bacteria 11725
66 Ga0097620_100007883 3300006931 Bacteria 10807
67 Ga0097620_100008329 3300006931 Bacteria 10508
68 Ga0099794_10001037 3300007265 Bacteria 9447
69 Ga0111539_10011192 3300009094 Bacteria 11275
70 Ga0111539_10032500 3300009094 Bacteria 6335
71 Ga0111539_10175968 3300009094 Bacteria 2500
72 Ga0114129_10001125 3300009147 Bacteria 35324
73 Ga0114129_10002170 3300009147 Bacteria 27015
74 Ga0114129_10004628 3300009147 Bacteria 19421
75 Ga0114129_10006120 3300009147 Bacteria 17062
76 Ga0114129_10009638 3300009147 Bacteria 13779
77 Ga0114129_10022039 3300009147 Bacteria 9041
78 Ga0114129_10037920 3300009147 Bacteria 6799
79 Ga0114129_10038499 3300009147 Bacteria 6744
80 Ga0114129_10043147 3300009147 Bacteria 6346
81 Ga0114129_10055610 3300009147 Bacteria 5545
82 Ga0114129_10059632 3300009147 Bacteria 5335
83 Ga0105243_10034240 3300009148 Bacteria 3930
84 Ga0105243_10037953 3300009148 Bacteria 3748
85 Ga0105249_10007530 3300009553 Bacteria 9497
86 Ga0105249_10107356 3300009553 Bacteria 2635
87 Ga0105246_10012304 3300011119 Bacteria 5335
88 Ga0207653_10008112 3300025885 Bacteria 3272
89 Ga0207684_10013377 3300025910 Bacteria 7098
90 Ga0207684_10028538 3300025910 Bacteria 4754
91 Ga0207684_10074415 3300025910 Bacteria 2886
92 Ga0207663_10045744 3300025916 Bacteria 2694
93 Ga0207646_10023408 3300025922 Bacteria 5673
94 Ga0207646_10050204 3300025922 Unclassified 3734
95 Ga0207709_10038988 3300025935 Bacteria 2834
96 Ga0207670_10041479 3300025936 Bacteria 3027
97 Ga0207665_10000424 3300025939 Bacteria 29115
98 Ga0207691_10033351 3300025940 Bacteria 4794
99 Ga0207708_10027216 3300026075 Bacteria 4329
100 Ga0207675_100049624 3300026118 Bacteria 3916
101 Ga0209588_1000568 3300027671 Bacteria 9481
102 Ga0207428_10000139 3300027907 Bacteria 98277
103 Ga0207428_10044176 3300027907 Bacteria 3595
104 Ga0265332_10016298 3300031238 Bacteria 3278
105 Ga0316576_10025051 3300031727 Unclassified 4173
106 Ga0316578_10002015 3300031728 Bacteria 8644
107 Ga0316577_10000246 3300031733 Bacteria 19022
108 Ga0316577_10001788 3300031733 Bacteria 10372
109 Ga0316574_0001351 3300035398 Bacteria 11542
110 Ga0316582_0009054 3300036647 Bacteria 5383
111 Ga0316582_0018124 3300036647 Unclassified 4090
112 Ga0316584_0032820 3300036712 Unclassified 3842
113 Ga0316581_0005508 3300037588 Bacteria 3306
114 Ga0451577_0030296 3300042876 Bacteria 4889
115 Ga0451577_0075604 3300042876 Unclassified 3003
116 Ga0451577_0148018 3300042876 Bacteria 2112
117 Ga0453683_0000523 3300044673 Bacteria 43101
118 Ga0453683_0002679 3300044673 Bacteria 13605
119 Ga0453683_0019662 3300044673 Bacteria 4322
120 Ga0453684_0000402 3300044712 Bacteria 178427
121 Ga0453684_0001638 3300044712 Bacteria 60803
122 Ga0453684_0002811 3300044712 Bacteria 41136
123 Ga0453684_0005353 3300044712 Bacteria 25546
124 Ga0453684_0006097 3300044712 Bacteria 23247
125 Ga0453684_0011008 3300044712 Bacteria 15280
126 Ga0453684_0017807 3300044712 Bacteria 10964
127 Ga0453684_0028426 3300044712 Bacteria 7978
128 Ga0453684_0041398 3300044712 Bacteria 6232
129 Ga0453684_0046411 3300044712 Bacteria 5778
130 Ga0453684_0047556 3300044712 Bacteria 5687
131 Ga0453684_0052223 3300044712 Bacteria 5348
132 Ga0453684_0061011 3300044712 Bacteria 4844
133 Ga0453684_0066438 3300044712 Bacteria 4592
134 Ga0453684_0066900 3300044712 Bacteria 4573
135 Ga0453684_0074149 3300044712 Unclassified 4286
136 Ga0453684_0077908 3300044712 Bacteria 4150
137 Ga0453684_0091254 3300044712 Unclassified 3761
138 Ga0453684_0096022 3300044712 Bacteria 3642
139 Ga0453684_0107779 3300044712 Unclassified 3391
140 Ga0453684_0146238 3300044712 Bacteria 2815
141 Ga0453684_0148188 3300044712 Bacteria 2792
142 Ga0453684_0149885 3300044712 Bacteria 2773
143 Ga0453684_0153446 3300044712 Bacteria 2734
144 Ga0451576_0002513 3300045051 Bacteria 27198
145 Ga0451576_0008815 3300045051 Bacteria 11785
146 Ga0451576_0026604 3300045051 Bacteria 6221
147 Ga0451576_0037174 3300045051 Bacteria 5157
148 Ga0451576_0050857 3300045051 Bacteria 4345
149 Ga0451576_0072734 3300045051 Unclassified 3577
150 Ga0451576_0141612 3300045051 Bacteria 2507
151 Ga0501041_0032050 3300049577 Bacteria 3177
152 Ga0501048_0041480 3300049582 Bacteria 3296
153 Ga0501071_0044063 3300049587 Bacteria 3200
154 Ga0501075_0004325 3300049591 Bacteria 9611
155 Ga0501076_0017751 3300049592 Bacteria 5410
156 Ga0501076_0070196 3300049592 Bacteria 2800
157 Ga0501081_0034462 3300049743 Bacteria 3445
158 Ga0501081_0037133 3300049743 Unclassified 3324
159 nmdc:mga06z11_28373_c1 3300050494 Bacteria 2685
160 nmdc:mga05p37_1479_c1 3300050507 Bacteria 27310
161 nmdc:mga05p37_159893_c1 3300050507 Unclassified 2752
162 nmdc:mga05p37_17008_c1 3300050507 Bacteria 8771
163 nmdc:mga05p37_19856_c1 3300050507 Bacteria 8130
164 nmdc:mga05p37_2237_c1 3300050507 Bacteria 22548
165 nmdc:mga05p37_25268_c1 3300050507 Bacteria 7224
166 nmdc:mga05p37_283063_c1 3300050507 Bacteria 1976
167 nmdc:mga05p37_37398_c1 3300050507 Bacteria 5951
168 nmdc:mga05p37_39732_c1 3300050507 Bacteria 5777
169 nmdc:mga05p37_42479_c1 3300050507 Bacteria 5586
170 nmdc:mga05p37_4443_c1 3300050507 Bacteria 16393
171 nmdc:mga09592_11921_c1 3300050508 Bacteria 7072
172 nmdc:mga09592_12809_c1 3300050508 Bacteria 6839
173 nmdc:mga09592_3177_c1 3300050508 Bacteria 13333
174 nmdc:mga06r32_50525_c1 3300050510 Bacteria 3978
175 nmdc:mga06r32_63400_c1 3300050510 Bacteria 3562
176 nmdc:mga06r32_64563_c1 3300050510 Bacteria 3530
177 nmdc:mga06r32_67487_c1 3300050510 Bacteria 3453
178 nmdc:mga08y16_128375_c1 3300050511 Bacteria 2637
179 nmdc:mga08y16_47791_c1 3300050511 Bacteria 4479
180 nmdc:mga08y16_6925_c1 3300050511 Bacteria 11886
181 nmdc:mga0n895_21733_c1 3300050512 Bacteria 6005
182 nmdc:mga0n895_7298_c1 3300050512 Bacteria 9473
183 nmdc:mga0rr50_3929_c1 3300050513 Bacteria 8644
184 nmdc:mga0rr50_6424_c1 3300050513 Bacteria 7153
185 nmdc:mga08x19_23146_c1 3300050514 Bacteria 3854
186 nmdc:mga0a205_3320_c1 3300050515 Bacteria 14328
187 Ga0501084_0038241 3300054114 Bacteria 4012
188 Ga0501084_0100180 3300054114 Bacteria 2433

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005341 Ga0070691_10015793 Ga0070691_100157932 558
2 3300006177 Ga0075362_10016351 Ga0075362_100163512 560
3 3300006195 Ga0075366_10005154 Ga0075366_100051546 560
4 3300006880 Ga0075429_100093608 Ga0075429_1000936082 560
5 3300009094 Ga0111539_10011192 Ga0111539_1001119210 560
6 3300027907 Ga0207428_10000139 Ga0207428_1000013969 560
7 3300050494 nmdc:mga06z11_28373_c1 nmdc:mga06z11_28373_c1_785_2665 560
8 3300050511 nmdc:mga08y16_6925_c1 nmdc:mga08y16_6925_c1_3655_5535 560
9 3300050507 nmdc:mga05p37_283063_c1 nmdc:mga05p37_283063_c1_93_1913 563
10 3300006871 Ga0075434_100110113 Ga0075434_1001101131 564
11 3300009094 Ga0111539_10175968 Ga0111539_101759682 564
12 3300050511 nmdc:mga08y16_128375_c1 nmdc:mga08y16_128375_c1_561_2387 564
13 3300050512 nmdc:mga0n895_21733_c1 nmdc:mga0n895_21733_c1_2259_4085 564
14 3300005617 Ga0068859_100008329 Ga0068859_1000083297 570
15 3300005842 Ga0068858_100029314 Ga0068858_1000293144 570
16 3300006931 Ga0097620_100008329 Ga0097620_1000083297 570
17 3300009147 Ga0114129_10059632 Ga0114129_100596325 570
18 3300009148 Ga0105243_10037953 Ga0105243_100379532 570
19 3300025910 Ga0207684_10013377 Ga0207684_100133779 570
20 3300026075 Ga0207708_10027216 Ga0207708_100272163 570
21 3300026118 Ga0207675_100049624 Ga0207675_1000496241 570
22 3300044712 Ga0453684_0005353 Ga0453684_0005353_50_1987 570
23 3300025940 Ga0207691_10033351 Ga0207691_100333514 571
24 3300044712 Ga0453684_0077908 Ga0453684_0077908_2167_4056 572
25 3300045051 Ga0451576_0141612 Ga0451576_0141612_26_1822 576
26 3300044712 Ga0453684_0074149 Ga0453684_0074149_1236_3200 579
27 3300025922 Ga0207646_10023408 Ga0207646_100234085 581
28 3300042876 Ga0451577_0030296 Ga0451577_0030296_1180_3195 581
29 3300005341 Ga0070691_10018195 Ga0070691_100181952 584
30 3300005406 Ga0070703_10008040 Ga0070703_100080402 584
31 3300005444 Ga0070694_100006707 Ga0070694_1000067076 584
32 3300005536 Ga0070697_100010388 Ga0070697_1000103886 584
33 3300005545 Ga0070695_100011064 Ga0070695_1000110644 584
34 3300006852 Ga0075433_10000962 Ga0075433_1000096220 584
35 3300006871 Ga0075434_100012440 Ga0075434_1000124403 584
36 3300007265 Ga0099794_10001037 Ga0099794_100010376 584
37 3300025885 Ga0207653_10008112 Ga0207653_100081122 584
38 3300025910 Ga0207684_10028538 Ga0207684_100285384 584
39 3300025916 Ga0207663_10045744 Ga0207663_100457442 584
40 3300025939 Ga0207665_10000424 Ga0207665_1000042425 584
41 3300027671 Ga0209588_1000568 Ga0209588_10005685 584
42 3300050507 nmdc:mga05p37_17008_c1 nmdc:mga05p37_17008_c1_3112_4935 584
43 3300050512 nmdc:mga0n895_7298_c1 nmdc:mga0n895_7298_c1_4520_6343 584
44 3300050513 nmdc:mga0rr50_3929_c1 nmdc:mga0rr50_3929_c1_3709_5532 584
45 3300050513 nmdc:mga0rr50_6424_c1 nmdc:mga0rr50_6424_c1_2074_3957 584
46 3300050514 nmdc:mga08x19_23146_c1 nmdc:mga08x19_23146_c1_1731_3554 584
47 3300050515 nmdc:mga0a205_3320_c1 nmdc:mga0a205_3320_c1_8797_10620 584
48 3300031238 Ga0265332_10016298 Ga0265332_100162981 586
49 3300005367 Ga0070667_100047507 Ga0070667_1000475072 589
50 3300005518 Ga0070699_100087125 Ga0070699_1000871252 592
51 3300044712 Ga0453684_0041398 Ga0453684_0041398_2643_4688 592
52 3300044712 Ga0453684_0001638 Ga0453684_0001638_30150_32102 593
53 3300044712 Ga0453684_0107779 Ga0453684_0107779_800_2782 593
54 3300036647 Ga0316582_0018124 Ga0316582_0018124_299_2155 596
55 3300036712 Ga0316584_0032820 Ga0316584_0032820_619_2475 596
56 3300005549 Ga0070704_100052432 Ga0070704_1000524322 597
57 3300005471 Ga0070698_100015062 Ga0070698_1000150622 599
58 3300006844 Ga0075428_100163528 Ga0075428_1001635282 599
59 3300006847 Ga0075431_100058874 Ga0075431_1000588741 599
60 3300006847 Ga0075431_100074291 Ga0075431_1000742912 599
61 3300009147 Ga0114129_10055610 Ga0114129_100556102 599
62 3300050510 nmdc:mga06r32_67487_c1 nmdc:mga06r32_67487_c1_744_2765 599
63 3300005468 Ga0070707_100097044 Ga0070707_1000970442 600
64 3300009553 Ga0105249_10007530 Ga0105249_100075302 604
65 3300006847 Ga0075431_100090856 Ga0075431_1000908563 605
66 3300006880 Ga0075429_100052899 Ga0075429_1000528993 605
67 3300045051 Ga0451576_0037174 Ga0451576_0037174_1793_3730 605
68 3300050507 nmdc:mga05p37_37398_c1 nmdc:mga05p37_37398_c1_309_2270 605
69 3300050508 nmdc:mga09592_12809_c1 nmdc:mga09592_12809_c1_950_2911 605
70 3300050510 nmdc:mga06r32_50525_c1 nmdc:mga06r32_50525_c1_226_2184 605
71 3300005295 Ga0065707_10001772 Ga0065707_100017722 606
72 3300005295 Ga0065707_10091649 Ga0065707_100916493 608
73 3300009147 Ga0114129_10004628 Ga0114129_1000462820 608
74 3300050507 nmdc:mga05p37_39732_c1 nmdc:mga05p37_39732_c1_1896_3860 608
75 3300009147 Ga0114129_10038499 Ga0114129_100384995 609
76 3300044712 Ga0453684_0006097 Ga0453684_0006097_9364_11346 609
77 3300044712 Ga0453684_0096022 Ga0453684_0096022_89_2047 609
78 3300050507 nmdc:mga05p37_42479_c1 nmdc:mga05p37_42479_c1_2968_4893 609
79 3300050510 nmdc:mga06r32_63400_c1 nmdc:mga06r32_63400_c1_1481_3406 609
80 3300005467 Ga0070706_100083799 Ga0070706_1000837992 610
81 3300005471 Ga0070698_100091360 Ga0070698_1000913602 610
82 3300005615 Ga0070702_100045229 Ga0070702_1000452291 610
83 3300009553 Ga0105249_10107356 Ga0105249_101073561 610
84 3300025910 Ga0207684_10074415 Ga0207684_100744152 610
85 3300044712 Ga0453684_0001638 Ga0453684_0001638_28108_30066 610
86 3300037588 Ga0316581_0005508 Ga0316581_0005508_1081_3009 611
87 3300044673 Ga0453683_0000523 Ga0453683_0000523_12238_14205 614
88 3300044712 Ga0453684_0017807 Ga0453684_0017807_2998_4956 614
89 3300044712 Ga0453684_0091254 Ga0453684_0091254_702_2663 614
90 3300044712 Ga0453684_0146238 Ga0453684_0146238_184_2118 614
91 3300045051 Ga0451576_0008815 Ga0451576_0008815_6394_8361 614
92 3300005295 Ga0065707_10085236 Ga0065707_100852363 615
93 3300006847 Ga0075431_100022524 Ga0075431_1000225242 615
94 3300044673 Ga0453683_0019662 Ga0453683_0019662_1333_3294 615
95 3300005981 Ga0081538_10011146 Ga0081538_100111468 616
96 3300011119 Ga0105246_10012304 Ga0105246_100123042 617
97 3300011119 Ga0105246_10012304 Ga0105246_100123043 617
98 2162886007 SwRhRL2b_contig_1033251 SwRhRL2b_0603.00007870 618
99 3300005289 Ga0065704_10070402 Ga0065704_1007040210 618
100 3300005295 Ga0065707_10082149 Ga0065707_1008214920 618
101 3300005518 Ga0070699_100025951 Ga0070699_1000259515 618
102 3300005518 Ga0070699_100064285 Ga0070699_1000642852 618
103 3300005546 Ga0070696_100017004 Ga0070696_1000170044 618
104 3300005985 Ga0081539_10004539 Ga0081539_1000453910 618
105 3300025922 Ga0207646_10050204 Ga0207646_100502042 618
106 3300044712 Ga0453684_0002811 Ga0453684_0002811_39077_41083 618
107 3300044712 Ga0453684_0052223 Ga0453684_0052223_2069_4036 618
108 3300044712 Ga0453684_0066438 Ga0453684_0066438_2576_4555 618
109 3300050507 nmdc:mga05p37_25268_c1 nmdc:mga05p37_25268_c1_76_2034 618
110 3300005295 Ga0065707_10083426 Ga0065707_100834267 619
111 3300005340 Ga0070689_100008466 Ga0070689_1000084662 619
112 3300005518 Ga0070699_100008167 Ga0070699_1000081673 619
113 3300005617 Ga0068859_100006665 Ga0068859_1000066656 619
114 3300006844 Ga0075428_100006886 Ga0075428_10000688611 619
115 3300006844 Ga0075428_100144886 Ga0075428_1001448861 619
116 3300006880 Ga0075429_100014908 Ga0075429_1000149082 619
117 3300006931 Ga0097620_100006665 Ga0097620_1000066656 619
118 3300009147 Ga0114129_10001125 Ga0114129_100011259 619
119 3300009147 Ga0114129_10009638 Ga0114129_100096385 619
120 3300025936 Ga0207670_10041479 Ga0207670_100414792 619
121 3300044712 Ga0453684_0046411 Ga0453684_0046411_1933_3894 619
122 3300044712 Ga0453684_0061011 Ga0453684_0061011_2671_4647 619
123 3300045051 Ga0451576_0026604 Ga0451576_0026604_1862_3829 619
124 3300045051 Ga0451576_0050857 Ga0451576_0050857_880_2847 619
125 3300049592 Ga0501076_0070196 Ga0501076_0070196_117_2081 619
126 3300049743 Ga0501081_0037133 Ga0501081_0037133_480_2444 619
127 3300050507 nmdc:mga05p37_4443_c1 nmdc:mga05p37_4443_c1_10357_12306 619
128 3300050508 nmdc:mga09592_11921_c1 nmdc:mga09592_11921_c1_2899_4848 619
129 3300042876 Ga0451577_0075604 Ga0451577_0075604_587_2548 620
130 3300044712 Ga0453684_0000402 Ga0453684_0000402_15500_17461 620
131 3300003203 JGI25406J46586_10000422 JGI25406J46586_1000042212 621
132 3300005468 Ga0070707_100051923 Ga0070707_1000519232 621
133 3300005981 Ga0081538_10003416 Ga0081538_1000341611 621
134 3300005985 Ga0081539_10000773 Ga0081539_1000077315 621
135 3300031733 Ga0316577_10001788 Ga0316577_100017886 621
136 3300044673 Ga0453683_0002679 Ga0453683_0002679_6729_8693 621
137 3300045051 Ga0451576_0002513 Ga0451576_0002513_21107_23071 621
138 3300031727 Ga0316576_10025051 Ga0316576_100250512 622
139 3300031728 Ga0316578_10002015 Ga0316578_100020153 622
140 3300031733 Ga0316577_10000246 Ga0316577_100002463 622
141 3300035398 Ga0316574_0001351 Ga0316574_0001351_3404_5338 622
142 3300036647 Ga0316582_0009054 Ga0316582_0009054_1477_3411 622
143 3300044712 Ga0453684_0153446 Ga0453684_0153446_286_2220 622
144 3300050507 nmdc:mga05p37_25268_c1 nmdc:mga05p37_25268_c1_2213_4174 622
145 3300005289 Ga0065704_10070402 Ga0065704_1007040214 623
146 3300009147 Ga0114129_10022039 Ga0114129_100220396 623
147 3300044712 Ga0453684_0011008 Ga0453684_0011008_790_2727 623
148 3300044712 Ga0453684_0028426 Ga0453684_0028426_56_1993 623
149 3300044712 Ga0453684_0148188 Ga0453684_0148188_765_2705 623
150 3300006847 Ga0075431_100050826 Ga0075431_1000508262 624
151 3300009094 Ga0111539_10032500 Ga0111539_100325004 624
152 3300027907 Ga0207428_10044176 Ga0207428_100441764 624
153 3300050510 nmdc:mga06r32_64563_c1 nmdc:mga06r32_64563_c1_839_2797 624
154 3300050511 nmdc:mga08y16_47791_c1 nmdc:mga08y16_47791_c1_522_2480 624
155 3300005937 Ga0081455_10004400 Ga0081455_1000440017 625
156 3300009147 Ga0114129_10043147 Ga0114129_100431472 625
157 3300042876 Ga0451577_0148018 Ga0451577_0148018_122_2074 625
158 3300044712 Ga0453684_0047556 Ga0453684_0047556_3712_5670 625
159 3300044712 Ga0453684_0149885 Ga0453684_0149885_573_2525 625
160 3300049582 Ga0501048_0041480 Ga0501048_0041480_112_2076 625
161 3300049587 Ga0501071_0044063 Ga0501071_0044063_632_2596 625
162 3300054114 Ga0501084_0100180 Ga0501084_0100180_105_2069 625
163 2162886007 SwRhRL2b_contig_597674 SwRhRL2b_0098.00002190 626
164 3300005289 Ga0065704_10070402 Ga0065704_1007040224 626
165 3300005295 Ga0065707_10006608 Ga0065707_100066082 626
166 3300005295 Ga0065707_10084352 Ga0065707_100843525 626
167 3300005471 Ga0070698_100044726 Ga0070698_1000447262 626
168 3300005546 Ga0070696_100017004 Ga0070696_1000170043 626
169 3300006844 Ga0075428_100037746 Ga0075428_1000377462 626
170 3300006880 Ga0075429_100003526 Ga0075429_1000035268 626
171 3300006880 Ga0075429_100005699 Ga0075429_1000056994 626
172 3300009147 Ga0114129_10002170 Ga0114129_1000217014 626
173 3300009147 Ga0114129_10037920 Ga0114129_100379202 626
174 3300009148 Ga0105243_10034240 Ga0105243_100342402 626
175 3300025935 Ga0207709_10038988 Ga0207709_100389881 626
176 3300044712 Ga0453684_0047556 Ga0453684_0047556_1307_3310 626
177 3300044712 Ga0453684_0066900 Ga0453684_0066900_1223_3190 626
178 3300045051 Ga0451576_0072734 Ga0451576_0072734_699_2660 626
179 3300049577 Ga0501041_0032050 Ga0501041_0032050_868_2868 626
180 3300049591 Ga0501075_0004325 Ga0501075_0004325_2176_4176 626
181 3300049592 Ga0501076_0017751 Ga0501076_0017751_818_2818 626
182 3300050507 nmdc:mga05p37_1479_c1 nmdc:mga05p37_1479_c1_4801_6768 626
183 3300050507 nmdc:mga05p37_159893_c1 nmdc:mga05p37_159893_c1_154_2121 626
184 3300050507 nmdc:mga05p37_19856_c1 nmdc:mga05p37_19856_c1_3862_5829 626
185 3300050507 nmdc:mga05p37_2237_c1 nmdc:mga05p37_2237_c1_1268_3217 626
186 3300050508 nmdc:mga09592_3177_c1 nmdc:mga09592_3177_c1_3312_5279 626
187 3300054114 Ga0501084_0038241 Ga0501084_0038241_77_2077 626
188 3300005985 Ga0081539_10004539 Ga0081539_1000453911 627
189 3300049743 Ga0501081_0034462 Ga0501081_0034462_1173_3134 627
190 2162886007 SwRhRL2b_contig_1033251 SwRhRL2b_0603.00007860 631
191 3300005289 Ga0065704_10070402 Ga0065704_1007040211 631
192 3300005295 Ga0065707_10082149 Ga0065707_1008214921 631
193 3300005295 Ga0065707_10087037 Ga0065707_100870374 631
194 3300005340 Ga0070689_100060322 Ga0070689_1000603222 631
195 3300005471 Ga0070698_100123439 Ga0070698_1001234391 631
196 3300005617 Ga0068859_100007883 Ga0068859_10000788310 631
197 3300005844 Ga0068862_100020193 Ga0068862_1000201934 631
198 3300006931 Ga0097620_100007883 Ga0097620_10000788310 631
199 3300009147 Ga0114129_10006120 Ga0114129_100061202 631

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13520

AA_permease_2

Amino acid permease

107

555

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
8b71-assembly1.cif.gz_B upright kima dimer with bound c-di-amp from b. subtilis 0.805 51 631
8b71-assembly1.cif.gz_B upright kima dimer with bound c-di-amp from b. subtilis 0.8024 51 631
8b70-assembly1.cif.gz_A kima from b. subtilis with nucleotide second-messenger c-di-amp bound 0.7723 50 631
8b70-assembly1.cif.gz_A kima from b. subtilis with nucleotide second-messenger c-di-amp bound 0.7618 50 631
6s3k-assembly1.cif.gz_B kima from bacillus subtilis in inward-facing, occluded state 0.7484 51 631
ID Description Score Start End Superfamily
af_I6Y1H7_43_499_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8608 61 489 1.20.1740.10
af_Q2FVH8_33_467_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.85 55 485 1.20.1740.10
af_Q2FVH8_33_467_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8309 55 485 1.20.1740.10
af_I6Y1H7_43_499_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8082 61 489 1.20.1740.10
af_Q86I87_92_535_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.7962 46 474 1.20.1740.10
ID Description Score Start End GO Terms
AF-A0A536BCR0-F1-model_v4 Uncharacterized protein 0.9285 501 629
AF-A0A2V8HWP8-F1-model_v4 Amino acid permease 0.9169 465 631
AF-A0A533SFQ8-F1-model_v4 Amino acid permease 0.9151 34 413 GO:0016020
GO:0022857
AF-A0A2M7SQR9-F1-model_v4 Permease 0.9064 76 460 GO:0016020
GO:0022857
AF-A0A536AYK8-F1-model_v4 APC family permease 0.9061 27 338 GO:0016020
GO:0022857

Feature Viewer

pLDDT pTM Quality
76.92 0.73 High
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Predicted Structure (AlphaFold2)

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