F305468

General Info

Members Datasets Scaffolds Average Seq Length
199 148 398 102

Family's Representative Sequence

Representative Sequence 3300005437|Ga0070710_10878200|Ga0070710_108782002
Length 111
Sequence MTTMANETKSDPAHVVEDVTGLDDLADALLVLRTRDEARRFLRDLCTLGELEALAHRWQIARLVDSGRPYLDVAETVHTSTATVTRVAHWLRHGAGGYALALDRTARSREG

Samples

Sample ID Description Type Environment
1 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
16 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
17 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
18 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
19 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
20 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
21 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
22 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
24 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
25 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
26 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
27 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
28 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
29 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
30 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
31 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
32 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
33 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
34 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
35 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
36 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
37 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
58 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
59 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
60 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
61 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
62 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
63 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
64 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
65 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
66 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
67 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
68 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
69 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
70 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
71 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
72 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
73 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
74 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
75 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
76 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
77 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
78 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
79 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
80 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
81 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
82 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
83 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
84 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
85 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
86 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
87 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
88 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
89 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
90 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
91 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
92 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
93 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
94 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
95 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
96 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
97 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
98 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
99 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
100 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
101 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
102 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
103 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
104 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
105 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
106 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
107 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
108 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
109 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
110 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
111 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
112 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
113 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
114 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
115 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
116 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
117 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
118 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
119 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
120 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
121 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
122 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
123 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
124 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
125 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
126 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
127 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
128 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
130 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
131 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
133 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
134 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
135 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
136 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
137 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
139 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
140 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
141 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
142 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
143 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
144 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
145 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
146 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
147 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
148 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.99
Metatranscriptomes 2.01
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 8.54
Rhizosphere 90.95
Stem 0
Stem Tuber 0
Unclassified 23.62

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070710_10878200 3300005437 Bacteria 646
2 Ga0070683_100302768 3300005329 Bacteria 1521
3 Ga0070682_101589156 3300005337 Bacteria 565
4 Ga0068868_100105677 3300005338 Bacteria 2283
5 Ga0070660_100236987 3300005339 Bacteria 1485
6 Ga0070661_100262925 3300005344 Bacteria 1334
7 Ga0070668_102041441 3300005347 Bacteria 529
8 Ga0070671_100096606 3300005355 Bacteria 2477
9 Ga0070714_100297685 3300005435 Bacteria 1503
10 Ga0070713_100222294 3300005436 Bacteria 1713
11 Ga0070710_10880587 3300005437 Unclassified 645
12 Ga0070711_100542184 3300005439 Unclassified 964
13 Ga0070681_10728661 3300005458 Unclassified 908
14 Ga0070707_100963790 3300005468 Bacteria 818
15 Ga0068855_100958495 3300005563 Bacteria 901
16 Ga0068855_101043165 3300005563 Bacteria 857
17 Ga0081539_10228613 3300005985 Bacteria 841
18 Ga0070717_11472301 3300006028 Bacteria 618
19 Ga0070712_100211148 3300006175 Bacteria 1531
20 Ga0075435_100555950 3300007076 Bacteria 994
21 Ga0105240_10252909 3300009093 Bacteria 2037
22 Ga0111539_10176568 3300009094 Bacteria 2495
23 Ga0111539_10304673 3300009094 Unclassified 1854
24 Ga0105245_10018497 3300009098 Bacteria 6093
25 Ga0105245_11774697 3300009098 Bacteria 670
26 Ga0114129_10137795 3300009147 Bacteria 3347
27 Ga0105243_10556189 3300009148 Bacteria 1097
28 Ga0105243_10709294 3300009148 Bacteria 982
29 Ga0105242_10552166 3300009176 Bacteria 1104
30 Ga0105242_11108497 3300009176 Bacteria 806
31 Ga0105239_12241550 3300010375 Bacteria 635
32 Ga0105239_12658020 3300010375 Unclassified 584
33 Ga0105239_12892279 3300010375 Unclassified 560
34 Ga0105246_11655280 3300011119 Bacteria 607
35 Ga0105246_12553958 3300011119 Bacteria 504
36 Ga0157373_11587061 3300013100 Bacteria 501
37 Ga0157370_10003288 3300013104 Bacteria 19063
38 Ga0157369_10022015 3300013105 Bacteria 7123
39 Ga0157369_10722990 3300013105 Unclassified 1025
40 Ga0163162_11107557 3300013306 Bacteria 897
41 Ga0157372_10294752 3300013307 Bacteria 1886
42 Ga0157372_12355900 3300013307 Bacteria 611
43 Ga0157372_13196071 3300013307 Unclassified 522
44 Ga0157377_11206222 3300014745 Bacteria 586
45 Ga0157376_11164787 3300014969 Unclassified 798
46 Ga0206356_10239465 3300020070 Bacteria 658
47 Ga0206356_11894801 3300020070 Unclassified 751
48 Ga0206354_11649377 3300020081 Bacteria 867
49 Ga0206353_10460029 3300020082 Bacteria 2878
50 Ga0207699_10287377 3300025906 Unclassified 1145
51 Ga0207707_10269997 3300025912 Bacteria 1474
52 Ga0207695_11247307 3300025913 Unclassified 624
53 Ga0207693_10076391 3300025915 Bacteria 2623
54 Ga0207663_10971912 3300025916 Bacteria 681
55 Ga0207687_10172622 3300025927 Bacteria 1669
56 Ga0207700_10462227 3300025928 Bacteria 1120
57 Ga0207700_11115015 3300025928 Unclassified 705
58 Ga0207664_10093999 3300025929 Bacteria 2463
59 Ga0207664_10338425 3300025929 Bacteria 1330
60 Ga0207706_10506874 3300025933 Unclassified 1041
61 Ga0207665_10173901 3300025939 Unclassified 1556
62 Ga0207665_10928206 3300025939 Bacteria 691
63 Ga0207689_10621960 3300025942 Unclassified 909
64 Ga0207661_10304967 3300025944 Bacteria 1428
65 Ga0207661_11373406 3300025944 Unclassified 648
66 Ga0207661_11876929 3300025944 Bacteria 545
67 Ga0207679_11315712 3300025945 Bacteria 663
68 Ga0207667_11533469 3300025949 Bacteria 637
69 Ga0207668_11205762 3300025972 Bacteria 680
70 Ga0207677_10254390 3300026023 Bacteria 1428
71 Ga0207639_11089966 3300026041 Bacteria 749
72 Ga0207678_11149474 3300026067 Bacteria 687
73 Ga0207708_10638235 3300026075 Bacteria 905
74 Ga0207698_10684489 3300026142 Bacteria 1019
75 Ga0265319_1010919 3300028563 Bacteria 3760
76 Ga0265334_10072030 3300028573 Unclassified 1286
77 Ga0265318_10102177 3300028577 Unclassified 1054
78 Ga0265338_11051543 3300028800 Bacteria 550
79 Ga0265320_10031479 3300031240 Bacteria 2724
80 Ga0265316_11309718 3300031344 Bacteria 500
81 Ga0307409_102591939 3300031995 Unclassified 535
82 Ga0373943_0485263 3300035170 Unclassified 721
83 Ga0373937_1636760 3300036401 Bacteria 591
84 Ga0373925_1504902 3300037068 Bacteria 551
85 Ga0395899_0062802 3300037312 Bacteria 2734
86 Ga0395899_0091248 3300037312 Bacteria 2208
87 Ga0395900_0012006 3300037418 Bacteria 8854
88 Ga0395900_0138210 3300037418 Unclassified 2496
89 Ga0395900_1786213 3300037418 Bacteria 525
90 Ga0395898_0038160 3300037466 Bacteria 4763
91 Ga0395898_0204783 3300037466 Bacteria 1883
92 Ga0395898_1824699 3300037466 Bacteria 529
93 Ga0395905_0012641 3300037471 Bacteria 8121
94 Ga0395905_0489999 3300037471 Bacteria 1129
95 Ga0395901_0022270 3300038443 Bacteria 6493
96 Ga0395901_0039292 3300038443 Bacteria 4897
97 Ga0395901_0039685 3300038443 Bacteria 4873
98 Ga0395901_0181851 3300038443 Bacteria 2205
99 Ga0395901_0364689 3300038443 Bacteria 1489
100 Ga0395901_0472024 3300038443 Bacteria 1281
101 Ga0395901_0555518 3300038443 Unclassified 1163
102 Ga0436363_1402471 3300039450 Bacteria 591
103 Ga0439439_0001982 3300041406 Bacteria 4250
104 Ga0439461_0006539 3300041410 Bacteria 2034
105 Ga0439431_0006907 3300041997 Bacteria 2523
106 Ga0439433_0004320 3300041999 Bacteria 3061
107 Ga0439442_017418 3300042002 Bacteria 1482
108 Ga0439445_0072664 3300042004 Bacteria 953
109 Ga0439462_0041923 3300042015 Bacteria 1222
110 Ga0439446_0000696 3300042156 Bacteria 7003
111 Ga0450918_085350 3300042531 Bacteria 606
112 Ga0466969_0166970 3300044656 Bacteria 1010
113 Ga0466961_0373645 3300044693 Bacteria 866
114 Ga0466963_0036311 3300044694 Bacteria 3213
115 Ga0466964_0104396 3300044706 Unclassified 1254
116 Ga0466968_0031645 3300044735 Bacteria 2196
117 Ga0466957_0914225 3300044842 Unclassified 627
118 Ga0451576_2418404 3300045051 Bacteria 537
119 Ga0466958_0012034 3300045836 Bacteria 4889
120 Ga0466967_0013010 3300045976 Bacteria 6402
121 Ga0466967_0029051 3300045976 Bacteria 4623
122 Ga0466967_2259837 3300045976 Bacteria 540
123 Ga0495592_0136580 3300046454 Bacteria 1709
124 Ga0495629_0517833 3300046459 Unclassified 803
125 Ga0495651_0511793 3300046462 Bacteria 767
126 Ga0495653_0048518 3300046463 Bacteria 3277
127 Ga0495653_0109133 3300046463 Bacteria 1992
128 Ga0495664_0650032 3300046477 Unclassified 625
129 Ga0495608_0594435 3300046511 Bacteria 664
130 Ga0495618_0430186 3300046514 Unclassified 804
131 Ga0495628_0073482 3300046516 Bacteria 2664
132 Ga0495652_0521077 3300046529 Bacteria 821
133 Ga0495640_0320094 3300046533 Unclassified 961
134 Ga0495640_0481025 3300046533 Unclassified 757
135 Ga0495587_0063042 3300046536 Bacteria 2169
136 Ga0495645_0790012 3300046543 Bacteria 570
137 Ga0495633_0457009 3300046558 Unclassified 577
138 Ga0495667_0215214 3300046559 Unclassified 1227
139 Ga0495667_0374455 3300046559 Bacteria 898
140 Ga0495635_0173334 3300046663 Unclassified 1467
141 Ga0495657_0094470 3300046675 Bacteria 1913
142 Ga0495599_0055443 3300046678 Bacteria 2482
143 Ga0495624_0462220 3300046690 Bacteria 760
144 Ga0495600_0397983 3300046809 Unclassified 857
145 Ga0495581_0488855 3300047315 Bacteria 716
146 Ga0495604_0189527 3300047317 Unclassified 1434
147 Ga0495674_0691049 3300047319 Unclassified 801
148 Ga0495676_0954880 3300047321 Unclassified 548
149 Ga0495680_0041458 3300047322 Bacteria 3661
150 Ga0495675_0152005 3300047444 Bacteria 1430
151 Ga0495684_0060545 3300047471 Bacteria 2882
152 Ga0495684_0471380 3300047471 Bacteria 869
153 Ga0495602_0242471 3300048088 Unclassified 1348
154 Ga0496100_0053065 3300048903 Bacteria 2639
155 Ga0496100_0553426 3300048903 Bacteria 890
156 Ga0496100_0991005 3300048903 Bacteria 661
157 Ga0496101_0082378 3300048904 Bacteria 2381
158 Ga0496101_0280130 3300048904 Bacteria 1303
159 Ga0496103_0816221 3300048906 Unclassified 588
160 Ga0496104_0060058 3300048907 Bacteria 3601
161 Ga0496105_0006005 3300048908 Bacteria 9276
162 Ga0496107_0330034 3300048910 Bacteria 1135
163 Ga0496111_0672110 3300048914 Unclassified 755
164 Ga0496112_0020384 3300048915 Bacteria 6284
165 Ga0496112_0094863 3300048915 Bacteria 2954
166 Ga0496112_0271318 3300048915 Unclassified 1645
167 Ga0496114_0269849 3300048917 Unclassified 1499
168 Ga0496114_0416857 3300048917 Bacteria 1189
169 Ga0496114_0995662 3300048917 Bacteria 721
170 Ga0496115_0331717 3300048918 Unclassified 1243
171 Ga0501032_1033442 3300049569 Bacteria 516
172 Ga0501034_0512686 3300049571 Bacteria 1112
173 Ga0501036_1282252 3300049572 Bacteria 596
174 Ga0501047_0073675 3300049581 Bacteria 3288
175 Ga0501069_0645783 3300049585 Bacteria 637
176 Ga0501072_0174539 3300049588 Bacteria 1714
177 Ga0501072_0694142 3300049588 Bacteria 800
178 Ga0501074_0091278 3300049590 Bacteria 2181
179 Ga0501074_1331696 3300049590 Unclassified 503
180 Ga0501076_0299679 3300049592 Unclassified 1318
181 Ga0501076_0548736 3300049592 Bacteria 953
182 Ga0501080_0329630 3300049742 Bacteria 1381
183 Ga0501035_0568414 3300049822 Bacteria 927
184 Ga0501045_0479063 3300049824 Bacteria 925
185 nmdc:mga05p37_114104_c1 3300050507 Bacteria 3321
186 nmdc:mga09592_528790_c1 3300050508 Bacteria 1014
187 nmdc:mga0qj67_181725_c1 3300050509 Bacteria 1708
188 nmdc:mga08y16_1555390_c1 3300050511 Bacteria 620
189 nmdc:mga08y16_545806_c1 3300050511 Bacteria 1173
190 Ga0495601_0009464 3300053077 Bacteria 5765
191 Ga0495612_0076296 3300053078 Unclassified 1404
192 Ga0495612_0235789 3300053078 Bacteria 812
193 Ga0495595_0159237 3300053084 Unclassified 1113
194 Ga0495595_0245097 3300053084 Bacteria 897
195 Ga0495619_0034663 3300053085 Bacteria 3282
196 Ga0495619_0110874 3300053085 Bacteria 1875
197 Ga0501084_0204684 3300054114 Bacteria 1665
198 Ga0501084_1177607 3300054114 Bacteria 643
199 Ga0530510_0160913 3300061734 Bacteria 1660
200 Ga0070710_10878200
201 Ga0070683_100302768
202 Ga0070682_101589156
203 Ga0068868_100105677
204 Ga0070660_100236987
205 Ga0070661_100262925
206 Ga0070668_102041441
207 Ga0070671_100096606
208 Ga0070714_100297685
209 Ga0070713_100222294
210 Ga0070710_10880587
211 Ga0070711_100542184
212 Ga0070681_10728661
213 Ga0070707_100963790
214 Ga0068855_100958495
215 Ga0068855_101043165
216 Ga0081539_10228613
217 Ga0070717_11472301
218 Ga0070712_100211148
219 Ga0075435_100555950
220 Ga0105240_10252909
221 Ga0111539_10176568
222 Ga0111539_10304673
223 Ga0105245_10018497
224 Ga0105245_11774697
225 Ga0114129_10137795
226 Ga0105243_10556189
227 Ga0105243_10709294
228 Ga0105242_10552166
229 Ga0105242_11108497
230 Ga0105239_12241550
231 Ga0105239_12658020
232 Ga0105239_12892279
233 Ga0105246_11655280
234 Ga0105246_12553958
235 Ga0157373_11587061
236 Ga0157370_10003288
237 Ga0157369_10022015
238 Ga0157369_10722990
239 Ga0163162_11107557
240 Ga0157372_10294752
241 Ga0157372_12355900
242 Ga0157372_13196071
243 Ga0157377_11206222
244 Ga0157376_11164787
245 Ga0206356_10239465
246 Ga0206356_11894801
247 Ga0206354_11649377
248 Ga0206353_10460029
249 Ga0207699_10287377
250 Ga0207707_10269997
251 Ga0207695_11247307
252 Ga0207693_10076391
253 Ga0207663_10971912
254 Ga0207687_10172622
255 Ga0207700_10462227
256 Ga0207700_11115015
257 Ga0207664_10093999
258 Ga0207664_10338425
259 Ga0207706_10506874
260 Ga0207665_10173901
261 Ga0207665_10928206
262 Ga0207689_10621960
263 Ga0207661_10304967
264 Ga0207661_11373406
265 Ga0207661_11876929
266 Ga0207679_11315712
267 Ga0207667_11533469
268 Ga0207668_11205762
269 Ga0207677_10254390
270 Ga0207639_11089966
271 Ga0207678_11149474
272 Ga0207708_10638235
273 Ga0207698_10684489
274 Ga0265319_1010919
275 Ga0265334_10072030
276 Ga0265318_10102177
277 Ga0265338_11051543
278 Ga0265320_10031479
279 Ga0265316_11309718
280 Ga0307409_102591939
281 Ga0373943_0485263
282 Ga0373937_1636760
283 Ga0373925_1504902
284 Ga0395899_0062802
285 Ga0395899_0091248
286 Ga0395900_0012006
287 Ga0395900_0138210
288 Ga0395900_1786213
289 Ga0395898_0038160
290 Ga0395898_0204783
291 Ga0395898_1824699
292 Ga0395905_0012641
293 Ga0395905_0489999
294 Ga0395901_0022270
295 Ga0395901_0039292
296 Ga0395901_0039685
297 Ga0395901_0181851
298 Ga0395901_0364689
299 Ga0395901_0472024
300 Ga0395901_0555518
301 Ga0436363_1402471
302 Ga0439439_0001982
303 Ga0439461_0006539
304 Ga0439431_0006907
305 Ga0439433_0004320
306 Ga0439442_017418
307 Ga0439445_0072664
308 Ga0439462_0041923
309 Ga0439446_0000696
310 Ga0450918_085350
311 Ga0466969_0166970
312 Ga0466961_0373645
313 Ga0466963_0036311
314 Ga0466964_0104396
315 Ga0466968_0031645
316 Ga0466957_0914225
317 Ga0451576_2418404
318 Ga0466958_0012034
319 Ga0466967_0013010
320 Ga0466967_0029051
321 Ga0466967_2259837
322 Ga0495592_0136580
323 Ga0495629_0517833
324 Ga0495651_0511793
325 Ga0495653_0048518
326 Ga0495653_0109133
327 Ga0495664_0650032
328 Ga0495608_0594435
329 Ga0495618_0430186
330 Ga0495628_0073482
331 Ga0495652_0521077
332 Ga0495640_0320094
333 Ga0495640_0481025
334 Ga0495587_0063042
335 Ga0495645_0790012
336 Ga0495633_0457009
337 Ga0495667_0215214
338 Ga0495667_0374455
339 Ga0495635_0173334
340 Ga0495657_0094470
341 Ga0495599_0055443
342 Ga0495624_0462220
343 Ga0495600_0397983
344 Ga0495581_0488855
345 Ga0495604_0189527
346 Ga0495674_0691049
347 Ga0495676_0954880
348 Ga0495680_0041458
349 Ga0495675_0152005
350 Ga0495684_0060545
351 Ga0495684_0471380
352 Ga0495602_0242471
353 Ga0496100_0053065
354 Ga0496100_0553426
355 Ga0496100_0991005
356 Ga0496101_0082378
357 Ga0496101_0280130
358 Ga0496103_0816221
359 Ga0496104_0060058
360 Ga0496105_0006005
361 Ga0496107_0330034
362 Ga0496111_0672110
363 Ga0496112_0020384
364 Ga0496112_0094863
365 Ga0496112_0271318
366 Ga0496114_0269849
367 Ga0496114_0416857
368 Ga0496114_0995662
369 Ga0496115_0331717
370 Ga0501032_1033442
371 Ga0501034_0512686
372 Ga0501036_1282252
373 Ga0501047_0073675
374 Ga0501069_0645783
375 Ga0501072_0174539
376 Ga0501072_0694142
377 Ga0501074_0091278
378 Ga0501074_1331696
379 Ga0501076_0299679
380 Ga0501076_0548736
381 Ga0501080_0329630
382 Ga0501035_0568414
383 Ga0501045_0479063
384 nmdc:mga05p37_114104_c1
385 nmdc:mga09592_528790_c1
386 nmdc:mga0qj67_181725_c1
387 nmdc:mga08y16_1555390_c1
388 nmdc:mga08y16_545806_c1
389 Ga0495601_0009464
390 Ga0495612_0076296
391 Ga0495612_0235789
392 Ga0495595_0159237
393 Ga0495595_0245097
394 Ga0495619_0034663
395 Ga0495619_0110874
396 Ga0501084_0204684
397 Ga0501084_1177607
398 Ga0530510_0160913

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01371

Trp_repressor

Trp repressor protein

20

106

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
3frw-assembly1.cif.gz_A crystal structure of putative trpr protein from ruminococcus obeum 0.9416 11 98
3g1c-assembly1.cif.gz_A-2 the crystal structure of a trpr like protein from eubacterium eligens atcc 27750 0.938 10 98
3frw-assembly2.cif.gz_D crystal structure of putative trpr protein from ruminococcus obeum 0.9275 11 98
3kor-assembly1.cif.gz_A crystal structure of a putative trp repressor from staphylococcus aureus 0.9251 11 98
1pdn-assembly1.cif.gz_C crystal structure of a paired domain-dna complex at 2.5 angstroms resolution reveals structural basis for pax developmental mutations 0.9216 47 84
ID Description Score Start End Superfamily
3e5xA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9405 60 84 1.10.10.10
3g1cA00 Mainly Alpha;Orthogonal Bundle;Trp Operon Repressor; Chain A;TrpR-like 0.938 10 98 1.10.1270.10
af_Q21972_79_144_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9278 46 84 1.10.10.10
3korD00 Mainly Alpha;Orthogonal Bundle;Trp Operon Repressor; Chain A;TrpR-like 0.9264 8 96 1.10.1270.10
af_Q2G1Y1_2_100_1.10.1270.10 Mainly Alpha;Orthogonal Bundle;Trp Operon Repressor; Chain A;TrpR-like 0.9224 11 98 1.10.1270.10
ID Description Score Start End GO Terms
AF-A0A2E6YAM1-F1-model_v4 Transposase 0.9943 18 96 GO:0003700
GO:0043565
AF-A0A1F5SDI6-F1-model_v4 TrpR, YerC/YecD 0.993 24 97 GO:0003700
GO:0043565
AF-A0A0G1U500-F1-model_v4 TrpR like protein, YerC/YecD 0.9859 11 97 GO:0003700
GO:0043565
AF-A0A2H0VIF1-F1-model_v4 Transcriptional regulator 0.9859 14 99 GO:0003700
GO:0043565
AF-A0A1F6JS93-F1-model_v4 Uncharacterized protein 0.9851 13 98 GO:0003700
GO:0043565

Map