F304727

General Info

Members Datasets Scaffolds Average Seq Length
198 132 396 701

Family's Representative Sequence

Representative Sequence 3300037471|Ga0395905_0017263|Ga0395905_0017263_764_3334
Length 791
Sequence VRHARARDGVVNSRAMSEAGEELRAAKSTRRRGAPWLFGGLVLLLLSVLVTLQVFGLWEVFTPDTASDTLLIYALSTLNFVAFFLFSFILIRSLLKLRRERRERQLGSKIKTRLVVYFIAVSLLPITATALFSNMFFNRTLEKYFSNFPEGVVREAHDAQQRDYQQQSEQLVDLAALAAVQLNRQQGDITVQNLGDIADGRFAALAVLKSDGAPVADVVEGQYAGLRAELESLMRGASGAGALKVGGRTFDVTVAPLAGGRRLIAVREQQQDANLSTLAVGAQRFEGFKRGQRRVRLLGLSTIGLLTLMLLFAATWSAIHLARGIGTPIRALAEAARAVAGGNLAHRVEPVTDDELAVLADAFNDMTAQLSENRRRLEANAAELREKNCALEERRHYIETVLQTVSTGVISLDEENRVTTINAAALSMLRLEQPPAPQTPLSEVVSAGDYALLERVLWRSRLRGRAAEQMELARVAAQDGSGNGVEGIPVALTATALASRAGENRRGVVLVIEDLSELLAAQRAAAWSEVARRLAHEIKNPLTPIQLSAERIARNFRRASNGDEETARNSGSRRQGQEAGQASGGGGGNSHNAEQERVARVVEECTATISREVAGMKAMVDEFTRFARLPHARLEPADLNEVVRQAVALYEDRLEDTRMDVLLARELPGALLDSEQLRRVFVNLIDNAIEALAEAEGERRITIATGHDPARGLLIAEVADTGHGIARADFARLFQPYFSTRGRGTGLGLAIVQRIMAEHGGRIRAESNRPRGARMIIELPVADDAKADVRC

Samples

Sample ID Description Type Environment
1 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300000532 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA_Illumina_Assembled Metagenome Rhizosphere
4 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
5 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
8 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
9 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
10 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
11 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
12 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
13 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
14 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
15 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
16 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
17 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
18 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
19 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
20 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
21 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
22 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
23 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
24 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
25 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
26 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
27 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
28 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
29 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
30 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
31 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
32 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
33 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
34 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
35 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
36 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
37 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
38 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
39 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
40 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
41 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
42 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
43 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
44 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
45 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
46 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
47 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
48 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
49 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
50 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
51 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
52 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
53 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
54 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
55 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
56 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
57 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
58 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
59 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
60 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
61 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
62 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
63 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
64 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
65 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
66 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
67 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
68 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
69 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
70 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
71 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
72 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
73 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
74 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
75 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
76 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
77 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
78 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
106 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
108 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
109 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
110 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
111 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
112 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
113 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
114 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
115 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
116 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
117 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
118 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
119 3300049519 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_B_7_drought Metagenome Rhizosphere
120 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
121 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
122 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
123 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
124 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
125 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
126 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
127 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
128 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
129 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
130 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
131 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
132 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.51
Nodule 0
Rhizoplane 0
Rhizosphere 96.46
Stem 0
Stem Tuber 0
Unclassified 1.52

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0395905_0017263 3300037471 Bacteria 6855
2 SwRhRL2b_contig_3936192 2162886007 Bacteria 2703
3 CNAas_1000011 3300000532 Bacteria 11080
4 JGI24751J29686_10000157 3300002459 Bacteria 32511
5 JGI25406J46586_10001078 3300003203 Bacteria 12800
6 JGI25406J46586_10004897 3300003203 Bacteria 6221
7 rootL2_10211317 3300003322 Bacteria 2674
8 Ga0065714_10064469 3300005288 Bacteria 61986
9 Ga0065712_10000127 3300005290 Bacteria 117106
10 Ga0065712_10010343 3300005290 Bacteria 5363
11 Ga0065715_10089776 3300005293 Bacteria 8552
12 Ga0065707_10006481 3300005295 Bacteria 2986
13 Ga0065707_10103926 3300005295 Bacteria 2718
14 Ga0070676_10013659 3300005328 Bacteria 4451
15 Ga0070690_100046343 3300005330 Bacteria 2763
16 Ga0070670_100001218 3300005331 Bacteria 20468
17 Ga0068869_100003718 3300005334 Bacteria 9389
18 Ga0068869_100055120 3300005334 Bacteria 2896
19 Ga0070680_100001681 3300005336 Bacteria 16208
20 Ga0070682_100016728 3300005337 Bacteria 4268
21 Ga0070687_100029173 3300005343 Unclassified 2684
22 Ga0070692_10003949 3300005345 Bacteria 6120
23 Ga0070692_10009198 3300005345 Bacteria 4443
24 Ga0070668_100043492 3300005347 Bacteria 3445
25 Ga0070669_100053718 3300005353 Bacteria 2949
26 Ga0070671_100014266 3300005355 Bacteria 6416
27 Ga0070688_100059686 3300005365 Bacteria 2406
28 Ga0070659_100025881 3300005366 Bacteria 4513
29 Ga0070703_10001237 3300005406 Bacteria 7788
30 Ga0070700_100000155 3300005441 Bacteria 39898
31 Ga0070694_100004711 3300005444 Bacteria 8214
32 Ga0070694_100018599 3300005444 Bacteria 4411
33 Ga0070694_100048571 3300005444 Bacteria 2855
34 Ga0070681_10002427 3300005458 Bacteria 17048
35 Ga0068867_100007939 3300005459 Bacteria 7496
36 Ga0070706_100000068 3300005467 Bacteria 119756
37 Ga0070707_100016254 3300005468 Bacteria 6986
38 Ga0070707_100017151 3300005468 Bacteria 6804
39 Ga0070698_100000509 3300005471 Bacteria 41389
40 Ga0070698_100001973 3300005471 Bacteria 22816
41 Ga0070698_100017435 3300005471 Bacteria 7570
42 Ga0070698_100026625 3300005471 Bacteria 6018
43 Ga0070699_100007624 3300005518 Bacteria 9409
44 Ga0070699_100027777 3300005518 Bacteria 4879
45 Ga0070679_100002600 3300005530 Bacteria 16416
46 Ga0070697_100003038 3300005536 Bacteria 12881
47 Ga0070695_100035939 3300005545 Bacteria 3115
48 Ga0070695_100045832 3300005545 Bacteria 2788
49 Ga0070665_100071259 3300005548 Bacteria 3482
50 Ga0070664_100103986 3300005564 Bacteria 2473
51 Ga0070702_100003776 3300005615 Bacteria 6839
52 Ga0070702_100034505 3300005615 Bacteria 2789
53 Ga0068859_100002685 3300005617 Bacteria 18061
54 Ga0068859_100007805 3300005617 Bacteria 10862
55 Ga0068859_100016651 3300005617 Bacteria 7380
56 Ga0068859_100027249 3300005617 Bacteria 5732
57 Ga0068859_100048549 3300005617 Bacteria 4264
58 Ga0068859_100057114 3300005617 Unclassified 3931
59 Ga0068864_100010812 3300005618 Bacteria 7540
60 Ga0068864_100042562 3300005618 Bacteria 3887
61 Ga0068864_100056421 3300005618 Bacteria 3393
62 Ga0068861_100071343 3300005719 Bacteria 2692
63 Ga0068851_10003768 3300005834 Bacteria 6781
64 Ga0068863_100059036 3300005841 Bacteria 3630
65 Ga0068858_100016158 3300005842 Bacteria 7011
66 Ga0068858_100024179 3300005842 Bacteria 5661
67 Ga0068862_100013591 3300005844 Bacteria 6741
68 Ga0068862_100108482 3300005844 Bacteria 2435
69 Ga0081539_10000476 3300005985 Bacteria 84955
70 Ga0081539_10003679 3300005985 Bacteria 18369
71 Ga0081539_10004173 3300005985 Bacteria 16388
72 Ga0097621_100004848 3300006237 Bacteria 9424
73 Ga0097621_100019633 3300006237 Bacteria 5192
74 Ga0068871_100008941 3300006358 Bacteria 7229
75 Ga0075431_100048460 3300006847 Bacteria 4382
76 Ga0075433_10027473 3300006852 Bacteria 4827
77 Ga0075433_10083335 3300006852 Bacteria 2822
78 Ga0075434_100041644 3300006871 Bacteria 4550
79 Ga0075434_100043974 3300006871 Bacteria 4431
80 Ga0075429_100053345 3300006880 Bacteria 3518
81 Ga0075429_100071515 3300006880 Bacteria 3020
82 Ga0068865_100068806 3300006881 Bacteria 2504
83 Ga0075436_100000046 3300006914 Bacteria 74332
84 Ga0097620_100002684 3300006931 Bacteria 18061
85 Ga0097620_100007805 3300006931 Bacteria 10862
86 Ga0097620_100016651 3300006931 Bacteria 7380
87 Ga0097620_100027250 3300006931 Bacteria 5732
88 Ga0097620_100048547 3300006931 Bacteria 4264
89 Ga0097620_100057114 3300006931 Unclassified 3931
90 Ga0075435_100000513 3300007076 Bacteria 23642
91 Ga0099794_10006766 3300007265 Bacteria 4663
92 Ga0105240_10168630 3300009093 Bacteria 2595
93 Ga0111539_10000227 3300009094 Bacteria 67567
94 Ga0111539_10003591 3300009094 Bacteria 20440
95 Ga0105247_10014272 3300009101 Bacteria 4767
96 Ga0114129_10004182 3300009147 Bacteria 20393
97 Ga0114129_10037105 3300009147 Bacteria 6881
98 Ga0114129_10078527 3300009147 Bacteria 4591
99 Ga0105243_10000694 3300009148 Bacteria 32708
100 Ga0105243_10014861 3300009148 Bacteria 5890
101 Ga0105243_10027554 3300009148 Bacteria 4354
102 Ga0105242_10000782 3300009176 Bacteria 24694
103 Ga0105242_10002572 3300009176 Bacteria 14203
104 Ga0105242_10083042 3300009176 Bacteria 2682
105 Ga0105242_10094818 3300009176 Bacteria 2518
106 Ga0105248_10004353 3300009177 Bacteria 15660
107 Ga0105248_10016833 3300009177 Bacteria 8047
108 Ga0105237_10002034 3300009545 Bacteria 25707
109 Ga0105249_10000216 3300009553 Bacteria 65660
110 Ga0105249_10002421 3300009553 Bacteria 16198
111 Ga0105246_10022069 3300011119 Bacteria 4105
112 Ga0157374_10056530 3300013296 Bacteria 3663
113 Ga0157378_10013331 3300013297 Bacteria 7183
114 Ga0157378_10023348 3300013297 Bacteria 5443
115 Ga0157378_10050054 3300013297 Bacteria 3718
116 Ga0163162_10000045 3300013306 Bacteria 127819
117 Ga0163162_10000611 3300013306 Bacteria 33150
118 Ga0157375_10009062 3300013308 Bacteria 8713
119 Ga0163163_10000671 3300014325 Bacteria 29279
120 Ga0163163_10000674 3300014325 Bacteria 29178
121 Ga0163163_10018122 3300014325 Bacteria 6581
122 Ga0163163_10020367 3300014325 Bacteria 6246
123 Ga0157380_10013650 3300014326 Bacteria 5930
124 Ga0157377_10027412 3300014745 Bacteria 3059
125 Ga0157379_10029670 3300014968 Bacteria 4863
126 Ga0157376_10007435 3300014969 Bacteria 7822
127 Ga0213876_10000159 3300021384 Bacteria 70556
128 Ga0213876_10001798 3300021384 Bacteria 12996
129 Ga0207656_10004012 3300025321 Bacteria 5106
130 Ga0207653_10000088 3300025885 Bacteria 67316
131 Ga0207710_10000653 3300025900 Bacteria 19615
132 Ga0207643_10004982 3300025908 Bacteria 7107
133 Ga0207643_10008327 3300025908 Bacteria 5564
134 Ga0207684_10000297 3300025910 Bacteria 71105
135 Ga0207707_10000080 3300025912 Bacteria 96693
136 Ga0207707_10003592 3300025912 Bacteria 13752
137 Ga0207671_10004897 3300025914 Bacteria 12579
138 Ga0207660_10002197 3300025917 Bacteria 12911
139 Ga0207662_10039198 3300025918 Bacteria 2779
140 Ga0207662_10053447 3300025918 Bacteria 2406
141 Ga0207652_10000234 3300025921 Bacteria 58103
142 Ga0207646_10016033 3300025922 Bacteria 7043
143 Ga0207694_10086591 3300025924 Bacteria 2467
144 Ga0207650_10000041 3300025925 Bacteria 197115
145 Ga0207644_10024005 3300025931 Bacteria 4182
146 Ga0207644_10026001 3300025931 Bacteria 4029
147 Ga0207686_10000004 3300025934 Bacteria 349251
148 Ga0207686_10001003 3300025934 Bacteria 16773
149 Ga0207709_10000028 3300025935 Bacteria 334429
150 Ga0207709_10015052 3300025935 Bacteria 4284
151 Ga0207691_10004209 3300025940 Bacteria 13973
152 Ga0207711_10002724 3300025941 Bacteria 15581
153 Ga0207711_10022356 3300025941 Bacteria 5287
154 Ga0207689_10002280 3300025942 Bacteria 17952
155 Ga0207651_10006449 3300025960 Bacteria 6142
156 Ga0207712_10000418 3300025961 Bacteria 36399
157 Ga0207668_10013003 3300025972 Bacteria 5114
158 Ga0207708_10000188 3300026075 Bacteria 48769
159 Ga0207708_10015767 3300026075 Bacteria 5671
160 Ga0207708_10049886 3300026075 Bacteria 3187
161 Ga0207702_10034648 3300026078 Bacteria 4222
162 Ga0207641_10044130 3300026088 Bacteria 3748
163 Ga0207676_10016761 3300026095 Bacteria 5304
164 Ga0207676_10090470 3300026095 Bacteria 2511
165 Ga0207674_10032595 3300026116 Bacteria 5463
166 Ga0207674_10050718 3300026116 Bacteria 4238
167 Ga0207428_10028363 3300027907 Bacteria 4651
168 Ga0207428_10038928 3300027907 Bacteria 3862
169 Ga0268265_10025301 3300028380 Bacteria 4211
170 Ga0307513_10000792 3300031456 Bacteria 45967
171 Ga0307408_100007145 3300031548 Bacteria 7392
172 Ga0307405_10019587 3300031731 Bacteria 3762
173 Ga0307406_10001711 3300031901 Bacteria 12061
174 Ga0307409_100026777 3300031995 Bacteria 4074
175 Ga0307416_100004366 3300032002 Bacteria 8510
176 Ga0307414_10001348 3300032004 Bacteria 12703
177 Ga0307414_10006520 3300032004 Bacteria 6510
178 Ga0307411_10043675 3300032005 Bacteria 2869
179 Ga0307415_100005083 3300032126 Bacteria 6928
180 Ga0373951_0000582 3300035091 Bacteria 10080
181 Ga0436365_0067166 3300039437 Bacteria 157821
182 Ga0436365_0915988 3300039437 Bacteria 51495
183 Ga0495632_0015278 3300046519 Bacteria 4313
184 Ga0501296_001238 3300049519 Bacteria 2573
185 Ga0501202_002203 3300049652 Bacteria 3250
186 Ga0501217_000633 3300049661 Bacteria 5925
187 Ga0501227_003751 3300049665 Bacteria 3286
188 Ga0501225_0009635 3300049705 Bacteria 2744
189 nmdc:mga05p37_98190_c1 3300050507 Bacteria 3607
190 nmdc:mga0qj67_60379_c1 3300050509 Bacteria 3009
191 nmdc:mga08y16_14877_c1 3300050511 Bacteria 8182
192 nmdc:mga08y16_6445_c1 3300050511 Bacteria 12307
193 nmdc:mga0n895_147632_c1 3300050512 Bacteria 2381
194 nmdc:mga0rr50_456_c1 3300050513 Bacteria 21708
195 nmdc:mga08x19_5_c1 3300050514 Bacteria 464292
196 nmdc:mga0a205_70650_c1 3300050515 Bacteria 3371
197 Ga0500616_0000378 3300053153 Bacteria 62462
198 Ga0530510_0019680 3300061734 Bacteria 4793
199 Ga0395905_0017263
200 SwRhRL2b_contig_3936192
201 CNAas_1000011
202 JGI24751J29686_10000157
203 JGI25406J46586_10001078
204 JGI25406J46586_10004897
205 rootL2_10211317
206 Ga0065714_10064469
207 Ga0065712_10000127
208 Ga0065712_10010343
209 Ga0065715_10089776
210 Ga0065707_10006481
211 Ga0065707_10103926
212 Ga0070676_10013659
213 Ga0070690_100046343
214 Ga0070670_100001218
215 Ga0068869_100003718
216 Ga0068869_100055120
217 Ga0070680_100001681
218 Ga0070682_100016728
219 Ga0070687_100029173
220 Ga0070692_10003949
221 Ga0070692_10009198
222 Ga0070668_100043492
223 Ga0070669_100053718
224 Ga0070671_100014266
225 Ga0070688_100059686
226 Ga0070659_100025881
227 Ga0070703_10001237
228 Ga0070700_100000155
229 Ga0070694_100004711
230 Ga0070694_100018599
231 Ga0070694_100048571
232 Ga0070681_10002427
233 Ga0068867_100007939
234 Ga0070706_100000068
235 Ga0070707_100016254
236 Ga0070707_100017151
237 Ga0070698_100000509
238 Ga0070698_100001973
239 Ga0070698_100017435
240 Ga0070698_100026625
241 Ga0070699_100007624
242 Ga0070699_100027777
243 Ga0070679_100002600
244 Ga0070697_100003038
245 Ga0070695_100035939
246 Ga0070695_100045832
247 Ga0070665_100071259
248 Ga0070664_100103986
249 Ga0070702_100003776
250 Ga0070702_100034505
251 Ga0068859_100002685
252 Ga0068859_100007805
253 Ga0068859_100016651
254 Ga0068859_100027249
255 Ga0068859_100048549
256 Ga0068859_100057114
257 Ga0068864_100010812
258 Ga0068864_100042562
259 Ga0068864_100056421
260 Ga0068861_100071343
261 Ga0068851_10003768
262 Ga0068863_100059036
263 Ga0068858_100016158
264 Ga0068858_100024179
265 Ga0068862_100013591
266 Ga0068862_100108482
267 Ga0081539_10000476
268 Ga0081539_10003679
269 Ga0081539_10004173
270 Ga0097621_100004848
271 Ga0097621_100019633
272 Ga0068871_100008941
273 Ga0075431_100048460
274 Ga0075433_10027473
275 Ga0075433_10083335
276 Ga0075434_100041644
277 Ga0075434_100043974
278 Ga0075429_100053345
279 Ga0075429_100071515
280 Ga0068865_100068806
281 Ga0075436_100000046
282 Ga0097620_100002684
283 Ga0097620_100007805
284 Ga0097620_100016651
285 Ga0097620_100027250
286 Ga0097620_100048547
287 Ga0097620_100057114
288 Ga0075435_100000513
289 Ga0099794_10006766
290 Ga0105240_10168630
291 Ga0111539_10000227
292 Ga0111539_10003591
293 Ga0105247_10014272
294 Ga0114129_10004182
295 Ga0114129_10037105
296 Ga0114129_10078527
297 Ga0105243_10000694
298 Ga0105243_10014861
299 Ga0105243_10027554
300 Ga0105242_10000782
301 Ga0105242_10002572
302 Ga0105242_10083042
303 Ga0105242_10094818
304 Ga0105248_10004353
305 Ga0105248_10016833
306 Ga0105237_10002034
307 Ga0105249_10000216
308 Ga0105249_10002421
309 Ga0105246_10022069
310 Ga0157374_10056530
311 Ga0157378_10013331
312 Ga0157378_10023348
313 Ga0157378_10050054
314 Ga0163162_10000045
315 Ga0163162_10000611
316 Ga0157375_10009062
317 Ga0163163_10000671
318 Ga0163163_10000674
319 Ga0163163_10018122
320 Ga0163163_10020367
321 Ga0157380_10013650
322 Ga0157377_10027412
323 Ga0157379_10029670
324 Ga0157376_10007435
325 Ga0213876_10000159
326 Ga0213876_10001798
327 Ga0207656_10004012
328 Ga0207653_10000088
329 Ga0207710_10000653
330 Ga0207643_10004982
331 Ga0207643_10008327
332 Ga0207684_10000297
333 Ga0207707_10000080
334 Ga0207707_10003592
335 Ga0207671_10004897
336 Ga0207660_10002197
337 Ga0207662_10039198
338 Ga0207662_10053447
339 Ga0207652_10000234
340 Ga0207646_10016033
341 Ga0207694_10086591
342 Ga0207650_10000041
343 Ga0207644_10024005
344 Ga0207644_10026001
345 Ga0207686_10000004
346 Ga0207686_10001003
347 Ga0207709_10000028
348 Ga0207709_10015052
349 Ga0207691_10004209
350 Ga0207711_10002724
351 Ga0207711_10022356
352 Ga0207689_10002280
353 Ga0207651_10006449
354 Ga0207712_10000418
355 Ga0207668_10013003
356 Ga0207708_10000188
357 Ga0207708_10015767
358 Ga0207708_10049886
359 Ga0207702_10034648
360 Ga0207641_10044130
361 Ga0207676_10016761
362 Ga0207676_10090470
363 Ga0207674_10032595
364 Ga0207674_10050718
365 Ga0207428_10028363
366 Ga0207428_10038928
367 Ga0268265_10025301
368 Ga0307513_10000792
369 Ga0307408_100007145
370 Ga0307405_10019587
371 Ga0307406_10001711
372 Ga0307409_100026777
373 Ga0307416_100004366
374 Ga0307414_10001348
375 Ga0307414_10006520
376 Ga0307411_10043675
377 Ga0307415_100005083
378 Ga0373951_0000582
379 Ga0436365_0067166
380 Ga0436365_0915988
381 Ga0495632_0015278
382 Ga0501296_001238
383 Ga0501202_002203
384 Ga0501217_000633
385 Ga0501227_003751
386 Ga0501225_0009635
387 nmdc:mga05p37_98190_c1
388 nmdc:mga0qj67_60379_c1
389 nmdc:mga08y16_14877_c1
390 nmdc:mga08y16_6445_c1
391 nmdc:mga0n895_147632_c1
392 nmdc:mga0rr50_456_c1
393 nmdc:mga08x19_5_c1
394 nmdc:mga0a205_70650_c1
395 Ga0500616_0000378
396 Ga0530510_0019680

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00672

HAMP

HAMP domain

320

372

0.96

PF02518

HATPase_c

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

672

783

0.89

PF00989

PAS

PAS fold

396

515

0.85

PF14501

HATPase_c_5

GHKL domain

672

777

0.79

Map