F303717

General Info

Members Datasets Scaffolds Average Seq Length
197 166 394 424

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2857542790|2857542961
Length 459
Sequence EVCADPRALALEILADVRRETEDGPGVTRESYGAGENTALRLLEAHAEEMGLVCEYDRARNLWMRLPEDTRTDPFVVIGSHADSVPQGGNFDGLAGIVAGMLVLAGLLDRYASAPPVRVLALRGEESAWYGKAYMGSLSLLGRLPAQALALKHRSGKGTLGEAMARCGVDVEAVRAGEPLLDVAQVRAYLELHIEQGPVMVARGWPAAAVTGIRGNIRHNVVRCIGEAGHSGAVPRWLRKDALLAVAELLSRMDEHWRVLLQMGMDLVMTSGICSTLPQSHAVSVIPGEVRLSFEARSQDAQTMERFYALMRDECAAIEKSRGVRFEFDDKLVTAPATMDAGWVERLKVAAARTGAAIGLGTATGTGPGADTGNVAGAGTGAGAGTDTITGTVLEEIPSGAGHDAAVFANAGVPSAMVFVRNENGSHNPHEDMDIDDFLVGVDLFEGALLDIIAPPRAS

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
10 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
13 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
16 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
17 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
18 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
21 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
23 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
24 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
25 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
30 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
31 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
32 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
33 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
34 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
35 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
36 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
39 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
52 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
55 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
56 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
57 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
58 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
59 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
60 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
61 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
62 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
63 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
64 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
65 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
66 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
67 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
68 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
69 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
70 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
71 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
72 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
73 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
74 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
75 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
76 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
77 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
78 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
79 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
80 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
81 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
82 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
83 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
84 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
85 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
86 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
87 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
88 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
89 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
90 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
91 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
92 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
93 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
94 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
95 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
96 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
97 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
98 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
99 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
100 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
101 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
102 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
103 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
104 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
105 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
106 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
118 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
119 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
120 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
121 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
122 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
123 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
124 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
125 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
126 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
127 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
129 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
130 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
131 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
132 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
133 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
134 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
135 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
136 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
137 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
138 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
139 2857542790 Achromobacter sp. R-72367 Isolate Unclassified
140 2511231026 Herbaspirillum sp. YR522 Isolate Rhizosphere
141 2523533628 Maridesulfovibrio zosterae DSM 11974 Isolate Rhizosphere
142 2582581308 Rhizobium sp. OK494 Isolate Rhizosphere
143 2615840626 Rhizobium lusitanum P1-7 Isolate Nodule
144 2643221547 Pseudolabrys sp. Root1462 Isolate Unclassified
145 2643221580 Devosia sp. Root635 Isolate Unclassified
146 2643221674 Devosia sp. Root436 Isolate Unclassified
147 2643221734 Bosea sp. Root670 Isolate Unclassified
148 2643221736 Bosea sp. Root483D1 Isolate Unclassified
149 2818991467 Bosea vestrisii 3192 Isolate Unclassified
150 2841760612 Bosea sp. Tri-49 Isolate Nodule
151 2842698319 Methylobacterium sp. R-72139 Isolate Unclassified
152 2842718218 Acidovorax sp. R-73343 Isolate Unclassified
153 2842775625 Roseomonas sp. R-71825 Isolate Unclassified
154 2844104063 Bosea sp. Tri-39 Isolate Nodule
155 2851246043 Bosea sp. Tri-54 Isolate Nodule
156 2857576091 Pigmentiphaga sp. R-72090 Isolate Unclassified
157 2917699015 Bosea sp. F3-2 Isolate Rhizosphere
158 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
159 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
160 2932401849 Devosia sp. 2618 Isolate Rhizosphere
161 2974320154 Acidovorax wautersii SORGH_AS 335 Isolate Unclassified
162 641522639 Methylobacterium sp. 4-46 Isolate Nodule
163 8054563764 Acuticoccus kalidii M5D2P5 Isolate Unclassified
164 8055878733 Pseudomonas palmensis BBB001 Isolate Rhizosphere
165 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified
166 8057529695 Bosea vestrisii A18/4-2 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 85.79
Metatranscriptomes 0
Isolates 14.21

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.6
Nodule 3.55
Rhizoplane 5.08
Rhizosphere 59.9
Stem 0
Stem Tuber 0
Unclassified 2.54

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10056957 3300003320 Bacteria 7760
2 Ga0065165_1000234 3300005262 Bacteria 96709
3 Ga0070658_10027562 3300005327 Bacteria 4557
4 Ga0068869_100002219 3300005334 Bacteria 11689
5 Ga0070680_100039689 3300005336 Bacteria 3808
6 Ga0070660_100005459 3300005339 Bacteria 8804
7 Ga0070661_100020985 3300005344 Bacteria 4663
8 Ga0070668_100014107 3300005347 Bacteria 5972
9 Ga0070713_100077293 3300005436 Bacteria 2829
10 Ga0070681_10014331 3300005458 Bacteria 7889
11 Ga0070679_100015211 3300005530 Bacteria 7391
12 Ga0070684_100101219 3300005535 Bacteria 2574
13 Ga0068854_100094227 3300005578 Unclassified 2233
14 Ga0068856_100352379 3300005614 Bacteria 1490
15 Ga0068852_100080168 3300005616 Bacteria 2894
16 Ga0068859_100068862 3300005617 Bacteria 3573
17 Ga0070717_10028592 3300006028 Bacteria 4464
18 Ga0070717_10045547 3300006028 Bacteria 3586
19 Ga0075364_10025768 3300006051 Bacteria 3746
20 Ga0075430_100127039 3300006846 Unclassified 2125
21 Ga0075431_100070931 3300006847 Unclassified 3594
22 Ga0097620_100068862 3300006931 Bacteria 3573
23 Ga0079104_1002709 3300006946 Bacteria 9095
24 Ga0105251_10017481 3300009011 Bacteria 3841
25 Ga0105244_10000265 3300009036 Bacteria 52791
26 Ga0105244_10002325 3300009036 Bacteria 14455
27 Ga0105247_10048006 3300009101 Bacteria 2623
28 Ga0114129_10144631 3300009147 Unclassified 3258
29 Ga0105237_10001452 3300009545 Bacteria 31274
30 Ga0105239_10001463 3300010375 Bacteria 31403
31 Ga0105246_10130576 3300011119 Bacteria 1876
32 Ga0157370_10003919 3300013104 Bacteria 17337
33 Ga0157369_10286872 3300013105 Bacteria 1714
34 Ga0171462_1031 3300013250 Bacteria 104981
35 Ga0157375_10001260 3300013308 Bacteria 21897
36 Ga0182008_10019361 3300014497 Bacteria 3515
37 Ga0163161_10001374 3300017792 Bacteria 18049
38 Ga0209258_102876 3300025242 Bacteria 4080
39 Ga0209455_1000591 3300025272 Bacteria 23409
40 Ga0209130_1000279 3300025284 Bacteria 63145
41 Ga0209257_1027488 3300025304 Bacteria 1893
42 Ga0207655_1000295 3300025728 Bacteria 75367
43 Ga0207655_1004199 3300025728 Bacteria 10328
44 Ga0207705_10021066 3300025909 Bacteria 4650
45 Ga0207671_10001161 3300025914 Bacteria 31406
46 Ga0207660_10005232 3300025917 Bacteria 8429
47 Ga0207657_10012986 3300025919 Bacteria 8186
48 Ga0207649_10046776 3300025920 Bacteria 2660
49 Ga0207652_10039095 3300025921 Bacteria 4025
50 Ga0207689_10002621 3300025942 Bacteria 16648
51 Ga0207640_10068899 3300025981 Bacteria 2373
52 Ga0207703_10150532 3300026035 Bacteria 2029
53 Ga0207698_10035002 3300026142 Bacteria 3669
54 Ga0209371_1003875 3300027312 Bacteria 6912
55 Ga0209971_1015398 3300027682 Unclassified 1813
56 Ga0268264_10062213 3300028381 Bacteria 3134
57 Ga0307515_10061154 3300028794 Bacteria 5351
58 Ga0268256_1003584 3300030500 Bacteria 6921
59 Ga0265330_10022473 3300031235 Bacteria 2869
60 Ga0265320_10016902 3300031240 Bacteria 4069
61 Ga0265339_10046146 3300031249 Bacteria 2396
62 Ga0265331_10011090 3300031250 Bacteria 4944
63 Ga0265316_10064576 3300031344 Bacteria 2836
64 Ga0307509_10001905 3300031507 Bacteria 34457
65 Ga0307509_10022891 3300031507 Bacteria 7027
66 Ga0307508_10003931 3300031616 Bacteria 14746
67 Ga0307508_10062565 3300031616 Bacteria 3284
68 Ga0265314_10051822 3300031711 Bacteria 2857
69 Ga0265342_10003953 3300031712 Bacteria 11882
70 Ga0307516_10004923 3300031730 Bacteria 16241
71 Ga0307507_10062156 3300033179 Bacteria 3472
72 Ga0307510_10063845 3300033180 Bacteria 3745
73 Ga0307510_10113397 3300033180 Bacteria 2444
74 Ga0395900_0115432 3300037418 Bacteria 2755
75 Ga0400483_087699 3300039062 Bacteria 1743
76 Ga0436365_1270351 3300039437 Bacteria 3668
77 Ga0436361_0235042 3300039447 Bacteria 1710
78 Ga0495591_010972 3300046458 Bacteria 3461
79 Ga0495638_0100510 3300046460 Bacteria 1730
80 Ga0495584_0000103 3300046491 Bacteria 57542
81 Ga0495607_0000109 3300046501 Bacteria 86702
82 Ga0495583_0003549 3300046506 Bacteria 11766
83 Ga0495648_0002049 3300046524 Bacteria 19122
84 Ga0495654_0001220 3300046530 Bacteria 18224
85 Ga0495597_0001004 3300046542 Bacteria 21635
86 Ga0495633_0090736 3300046558 Bacteria 1420
87 Ga0495660_0007381 3300046810 Bacteria 6456
88 Ga0495672_0002352 3300047320 Bacteria 17472
89 Ga0495685_042120 3300047447 Bacteria 1559
90 Ga0495673_0000307 3300047469 Bacteria 64671
91 Ga0496100_0010933 3300048903 Bacteria 5150
92 Ga0496102_0000575 3300048905 Bacteria 39009
93 Ga0496103_0000658 3300048906 Bacteria 26129
94 Ga0496104_0126273 3300048907 Bacteria 2456
95 Ga0496105_0069962 3300048908 Bacteria 2901
96 Ga0496106_0043075 3300048909 Bacteria 3386
97 Ga0496108_0010035 3300048911 Bacteria 7679
98 Ga0496109_0002549 3300048912 Bacteria 15269
99 Ga0496110_0002563 3300048913 Bacteria 13665
100 Ga0496112_0021985 3300048915 Bacteria 6071
101 Ga0496116_0001143 3300048919 Bacteria 31538
102 Ga0496117_0001127 3300048920 Bacteria 40289
103 Ga0496117_0009866 3300048920 Bacteria 8794
104 Ga0496117_0059456 3300048920 Bacteria 2640
105 Ga0496118_0001757 3300048921 Bacteria 31406
106 Ga0496119_0002254 3300048922 Bacteria 21451
107 Ga0496120_0001307 3300048923 Bacteria 30979
108 Ga0496121_0000482 3300048924 Bacteria 77205
109 Ga0496121_0006674 3300048924 Bacteria 14195
110 Ga0496121_0041369 3300048924 Bacteria 4028
111 Ga0496122_0001837 3300048925 Bacteria 32363
112 Ga0496122_0008610 3300048925 Bacteria 10955
113 Ga0496123_0001463 3300048926 Bacteria 32772
114 Ga0496123_0016538 3300048926 Bacteria 5982
115 Ga0496123_0020131 3300048926 Bacteria 5231
116 Ga0496124_0000085 3300048927 Bacteria 203358
117 Ga0496124_0001680 3300048927 Bacteria 31404
118 Ga0496124_0005069 3300048927 Bacteria 15029
119 Ga0496125_0024999 3300048928 Bacteria 5480
120 Ga0496126_0005605 3300048929 Bacteria 14275
121 Ga0496126_0007970 3300048929 Bacteria 11508
122 Ga0496126_0102138 3300048929 Bacteria 2507
123 Ga0501031_0000001 3300049568 Bacteria 219461
124 Ga0501032_0000003 3300049569 Bacteria 317700
125 Ga0501033_0000069 3300049570 Bacteria 98307
126 Ga0501034_0000005 3300049571 Bacteria 367512
127 Ga0501034_0001398 3300049571 Bacteria 32452
128 Ga0501034_0031724 3300049571 Bacteria 5367
129 Ga0501034_0047594 3300049571 Bacteria 4330
130 Ga0501036_0000005 3300049572 Bacteria 246420
131 Ga0501037_0000005 3300049573 Bacteria 219461
132 Ga0501038_0000001 3300049574 Bacteria 375481
133 Ga0501039_0000015 3300049575 Bacteria 219470
134 Ga0501043_0001668 3300049579 Bacteria 19289
135 Ga0501046_0055024 3300049580 Bacteria 3129
136 Ga0501047_0000473 3300049581 Bacteria 43777
137 Ga0501047_0016648 3300049581 Bacteria 7020
138 Ga0501047_0029769 3300049581 Bacteria 5263
139 Ga0501047_0053068 3300049581 Bacteria 3919
140 Ga0501067_0017822 3300049583 Bacteria 3931
141 Ga0501068_0102965 3300049584 Bacteria 1770
142 Ga0501070_0006068 3300049586 Bacteria 10294
143 Ga0501070_0009013 3300049586 Bacteria 8442
144 Ga0501071_0025325 3300049587 Bacteria 4155
145 Ga0501072_0004901 3300049588 Bacteria 10180
146 Ga0501072_0028252 3300049588 Bacteria 4379
147 Ga0501073_0016439 3300049589 Bacteria 5361
148 Ga0501076_0048827 3300049592 Bacteria 3345
149 Ga0501079_0134121 3300049741 Bacteria 1927
150 Ga0501080_0038999 3300049742 Bacteria 4432
151 Ga0501083_0087750 3300049744 Bacteria 2057
152 Ga0501035_0000008 3300049822 Bacteria 313425
153 Ga0501035_0000621 3300049822 Bacteria 39045
154 Ga0501044_0000001 3300049823 Bacteria 418087
155 Ga0501044_0002864 3300049823 Bacteria 19640
156 Ga0501044_0046758 3300049823 Bacteria 4479
157 nmdc:mga0qj67_22672_c1 3300050509 Plasmid 4824
158 nmdc:mga0n895_432774_c1 3300050512 Bacteria 1329
159 nmdc:mga0sz30_87076_c1 3300050516 Bacteria 1356
160 Ga0495601_0019715 3300053077 Bacteria 4116
161 Ga0500595_000446 3300053119 Bacteria 25816
162 Ga0500595_010164 3300053119 Bacteria 3751
163 Ga0500618_000657 3300053125 Bacteria 20576
164 Ga0500618_000725 3300053125 Bacteria 18857
165 Ga0500618_001862 3300053125 Bacteria 8813
166 Ga0500559_0027189 3300053136 Bacteria 2441
167 Ga0501084_0169972 3300054114 Bacteria 1840
168 Ga0501082_0284248 3300060353 Bacteria 1440
169 Ga0530510_0058631 3300061734 Bacteria 2784
170 2857542961 2857542790 Bacteria 5326616
171 2511386012 2511231026 Bacteria 5225445
172 2524001130 2523533628 Bacteria 4098242
173 2585281510 2582581308 Bacteria 7413247
174 2616312730 2615840626 Bacteria 7921970
175 2643754736 2643221547 Bacteria 4740017
176 2643913037 2643221580 Bacteria 3816678
177 2644411509 2643221674 Bacteria 3919126
178 2644734910 2643221734 Bacteria 5365412
179 2644744994 2643221736 Bacteria 6608466
180 2819718672 2818991467 Bacteria 5893227
181 2841765917 2841760612 Bacteria 6454112
182 2842699610 2842698319 Bacteria 5190321
183 2842720422 2842718218 Bacteria 4560148
184 2842779436 2842775625 Bacteria 5587290
185 2844107527 2844104063 Bacteria 6440972
186 2851249567 2851246043 Bacteria 6439203
187 2857576614 2857576091 Bacteria 5465855
188 2917699620 2917699015 Bacteria 7043791
189 2928117809 2928115317 Bacteria 6477646
190 2929202065 2929199973 Bacteria 7260745
191 2932405885 2932401849 Bacteria 4262978
192 2974321398 2974320154 Bacteria 4571377
193 641643201 641522639 Bacteria 7737025
194 8054566892 8054563764 Bacteria 5592885
195 8055883014 8055878733 Bacteria 5907058
196 8055911064 8055909800 Bacteria 7278581
197 8057531854 8057529695 Bacteria 6306553
198 rootH2_10056957
199 Ga0065165_1000234
200 Ga0070658_10027562
201 Ga0068869_100002219
202 Ga0070680_100039689
203 Ga0070660_100005459
204 Ga0070661_100020985
205 Ga0070668_100014107
206 Ga0070713_100077293
207 Ga0070681_10014331
208 Ga0070679_100015211
209 Ga0070684_100101219
210 Ga0068854_100094227
211 Ga0068856_100352379
212 Ga0068852_100080168
213 Ga0068859_100068862
214 Ga0070717_10028592
215 Ga0070717_10045547
216 Ga0075364_10025768
217 Ga0075430_100127039
218 Ga0075431_100070931
219 Ga0097620_100068862
220 Ga0079104_1002709
221 Ga0105251_10017481
222 Ga0105244_10000265
223 Ga0105244_10002325
224 Ga0105247_10048006
225 Ga0114129_10144631
226 Ga0105237_10001452
227 Ga0105239_10001463
228 Ga0105246_10130576
229 Ga0157370_10003919
230 Ga0157369_10286872
231 Ga0171462_1031
232 Ga0157375_10001260
233 Ga0182008_10019361
234 Ga0163161_10001374
235 Ga0209258_102876
236 Ga0209455_1000591
237 Ga0209130_1000279
238 Ga0209257_1027488
239 Ga0207655_1000295
240 Ga0207655_1004199
241 Ga0207705_10021066
242 Ga0207671_10001161
243 Ga0207660_10005232
244 Ga0207657_10012986
245 Ga0207649_10046776
246 Ga0207652_10039095
247 Ga0207689_10002621
248 Ga0207640_10068899
249 Ga0207703_10150532
250 Ga0207698_10035002
251 Ga0209371_1003875
252 Ga0209971_1015398
253 Ga0268264_10062213
254 Ga0307515_10061154
255 Ga0268256_1003584
256 Ga0265330_10022473
257 Ga0265320_10016902
258 Ga0265339_10046146
259 Ga0265331_10011090
260 Ga0265316_10064576
261 Ga0307509_10001905
262 Ga0307509_10022891
263 Ga0307508_10003931
264 Ga0307508_10062565
265 Ga0265314_10051822
266 Ga0265342_10003953
267 Ga0307516_10004923
268 Ga0307507_10062156
269 Ga0307510_10063845
270 Ga0307510_10113397
271 Ga0395900_0115432
272 Ga0400483_087699
273 Ga0436365_1270351
274 Ga0436361_0235042
275 Ga0495591_010972
276 Ga0495638_0100510
277 Ga0495584_0000103
278 Ga0495607_0000109
279 Ga0495583_0003549
280 Ga0495648_0002049
281 Ga0495654_0001220
282 Ga0495597_0001004
283 Ga0495633_0090736
284 Ga0495660_0007381
285 Ga0495672_0002352
286 Ga0495685_042120
287 Ga0495673_0000307
288 Ga0496100_0010933
289 Ga0496102_0000575
290 Ga0496103_0000658
291 Ga0496104_0126273
292 Ga0496105_0069962
293 Ga0496106_0043075
294 Ga0496108_0010035
295 Ga0496109_0002549
296 Ga0496110_0002563
297 Ga0496112_0021985
298 Ga0496116_0001143
299 Ga0496117_0001127
300 Ga0496117_0009866
301 Ga0496117_0059456
302 Ga0496118_0001757
303 Ga0496119_0002254
304 Ga0496120_0001307
305 Ga0496121_0000482
306 Ga0496121_0006674
307 Ga0496121_0041369
308 Ga0496122_0001837
309 Ga0496122_0008610
310 Ga0496123_0001463
311 Ga0496123_0016538
312 Ga0496123_0020131
313 Ga0496124_0000085
314 Ga0496124_0001680
315 Ga0496124_0005069
316 Ga0496125_0024999
317 Ga0496126_0005605
318 Ga0496126_0007970
319 Ga0496126_0102138
320 Ga0501031_0000001
321 Ga0501032_0000003
322 Ga0501033_0000069
323 Ga0501034_0000005
324 Ga0501034_0001398
325 Ga0501034_0031724
326 Ga0501034_0047594
327 Ga0501036_0000005
328 Ga0501037_0000005
329 Ga0501038_0000001
330 Ga0501039_0000015
331 Ga0501043_0001668
332 Ga0501046_0055024
333 Ga0501047_0000473
334 Ga0501047_0016648
335 Ga0501047_0029769
336 Ga0501047_0053068
337 Ga0501067_0017822
338 Ga0501068_0102965
339 Ga0501070_0006068
340 Ga0501070_0009013
341 Ga0501071_0025325
342 Ga0501072_0004901
343 Ga0501072_0028252
344 Ga0501073_0016439
345 Ga0501076_0048827
346 Ga0501079_0134121
347 Ga0501080_0038999
348 Ga0501083_0087750
349 Ga0501035_0000008
350 Ga0501035_0000621
351 Ga0501044_0000001
352 Ga0501044_0002864
353 Ga0501044_0046758
354 nmdc:mga0qj67_22672_c1
355 nmdc:mga0n895_432774_c1
356 nmdc:mga0sz30_87076_c1
357 Ga0495601_0019715
358 Ga0500595_000446
359 Ga0500595_010164
360 Ga0500618_000657
361 Ga0500618_000725
362 Ga0500618_001862
363 Ga0500559_0027189
364 Ga0501084_0169972
365 Ga0501082_0284248
366 Ga0530510_0058631
367 2857542961
368 2511386012
369 2524001130
370 2585281510
371 2616312730
372 2643754736
373 2643913037
374 2644411509
375 2644734910
376 2644744994
377 2819718672
378 2841765917
379 2842699610
380 2842720422
381 2842779436
382 2844107527
383 2851249567
384 2857576614
385 2917699620
386 2928117809
387 2929202065
388 2932405885
389 2974321398
390 641643201
391 8054566892
392 8055883014
393 8055911064
394 8057531854

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01546

Peptidase_M20

Peptidase family M20/M25/M40

77

451

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
3n5f-assembly1.cif.gz_B crystal structure of l-n-carbamoylase from geobacillus stearothermophilus cect43 0.953 18 429
3n5f-assembly1.cif.gz_B crystal structure of l-n-carbamoylase from geobacillus stearothermophilus cect43 0.9439 18 429
5thw-assembly2.cif.gz_D crystal structure of amidase, hydantoinase/carbamoylase family from burkholderia multivorans 0.9346 18 429
2imo-assembly1.cif.gz_B crystal structure of allantoate amidohydrolase from escherichia coli at ph 4.6 0.9291 18 429
1z2l-assembly1.cif.gz_B crystal structure of allantoate-amidohydrolase from e.coli k12 in complex with substrate allantoate 0.9213 18 429
ID Description Score Start End Superfamily
3n5fA01 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.9337 18 429 3.40.630.10
5i4mA02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9235 228 342 3.30.70.360
3n5fA01 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.9213 18 429 3.40.630.10
5tp4B02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9211 227 341 3.30.70.360
2imoB01 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.914 18 426 3.40.630.10
ID Description Score Start End GO Terms
AF-A0A435TWT4-F1-model_v4 Zn-dependent hydrolase 0.9841 17 425 GO:0016813
GO:0046872
AF-A0A7X1TTW8-F1-model_v4 Hydantoinase/carbamoylase family amidase (EC 3.5.-.-) 0.9768 19 426 GO:0016813
GO:0046872
AF-A0A382ERT9-F1-model_v4 Peptidase M20 dimerisation domain-containing protein 0.9743 25 425 GO:0016813
AF-K1KEU6-F1-model_v4 Hydantoinase/carbamoylase family amidase 0.9708 16 429 GO:0016813
GO:0046872
AF-A0A5A7ZCE4-F1-model_v4 Hydantoinase/carbamoylase family amidase (EC 3.5.-.-) 0.969 18 427 GO:0016813
GO:0046872

Map