F303573

General Info

Members Datasets Scaffolds Average Seq Length
197 136 394 209

Family's Representative Sequence

Representative Sequence 3300049574|Ga0501038_0214437|Ga0501038_0214437_718_1413
Length 231
Sequence VNPGAATASEEEEDASVNIITDYPDLWRDALVGTLVLFFGGAVIALILGVIVGAMRVSPIPVARAVGTVYVNWIRNTPLTLVMFFFAFCMPLLLPGRANFLVLAVWALGIYTATYVAETIRSGINTVPVGQAEAARALGLTFGQVMSLIVLPQAARSVIPPMMSVFIALLKNTTVAAGFSVVNLGNIRAEMSENGENQLLTIVWVMVFFVVMVLLLAWLQRVLENRWRVAR

Samples

Sample ID Description Type Environment
1 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
2 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
3 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
8 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
9 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
10 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
11 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
12 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
13 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
14 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
15 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
16 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
17 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
18 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
19 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
20 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
21 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
22 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
23 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
24 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
25 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
26 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
29 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
30 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
31 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
32 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
33 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
34 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
35 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
36 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
37 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
38 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
39 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
40 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
41 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
42 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
43 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
44 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
45 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
46 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
47 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
48 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
49 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
50 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
51 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
52 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
53 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
54 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
55 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
56 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
57 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
58 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
59 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
60 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
61 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
62 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
63 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
64 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
65 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
71 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
72 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
73 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
74 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
75 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
76 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
77 3300059477 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 50R_CW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
78 3300059491 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 12R_AW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
79 3300059493 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 19R_SW_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
80 3300059505 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 24R_SD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
81 3300059508 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 53R_CD_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
82 3300059512 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 57R_AW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
83 3300059604 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 63R_AD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
84 3300059605 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 71R_SD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
85 3300059623 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 66R_SW_T2_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
86 3300059640 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 8R_CD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
87 3300059642 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 10R_AW_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
88 3300059643 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 13R_AD_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
89 3300059648 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 65R_SW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
90 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
91 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
92 2643221546 Microbacterium sp. Root53 Isolate Unclassified
93 2643221553 Microbacterium sp. Root553 Isolate Unclassified
94 2643221597 Microbacterium sp. Root180 Isolate Unclassified
95 2643221630 Microbacterium sp. Root322 Isolate Unclassified
96 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
97 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
98 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
99 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
100 2773857759 Microbacterium sp. 1294 Isolate Unclassified
101 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
102 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
103 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
104 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
105 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
106 2844849076 Arthrobacter cupressi DSM 24664 Isolate Rhizosphere
107 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
108 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
109 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
110 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
111 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
112 2897561785 Pseudoclavibacter endophyticus EGI 60007 Isolate Unclassified
113 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
114 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
115 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
116 2919051321 Sinomonas atrocyanea 1003 Isolate Rhizosphere
117 2919069694 Microbacterium sp. 1154 Isolate Unclassified
118 2919395869 Microbacterium resistens 2980 Isolate Unclassified
119 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
120 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
121 2946024296 Arthrobacter woluwensis W4I2 Isolate Rhizosphere
122 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
123 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
124 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere
125 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
126 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
127 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
128 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
129 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
130 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
131 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
132 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
133 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
134 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
135 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
136 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 68.02
Metatranscriptomes 8.12
Isolates 23.86

Biome Distribution

Category Percentage (%)
Aerial Root 0.51
Bulb 0
Endosphere 8.12
Nodule 0
Rhizoplane 5.58
Rhizosphere 53.81
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501038_0214437 3300049574 Bacteria 1539
2 LJQas_1006087 3300000549 Bacteria 1511
3 JGI24740J21852_10007232 3300001979 Bacteria 4525
4 JGI25154J39366_1005227 3300002738 Bacteria 2117
5 JGI25151J46595_10043327 3300003187 Bacteria 1612
6 rootH2_10280348 3300003320 Bacteria 1132
7 Ga0006562J51391_1007335 3300003578 Bacteria 4310
8 Ga0006562J51391_1007337 3300003578 Bacteria 2160
9 Ga0065714_10006859 3300005288 Bacteria 3521
10 Ga0075365_10010506 3300006038 Bacteria 5393
11 Ga0075364_10046582 3300006051 Bacteria 2823
12 Ga0075364_10094163 3300006051 Bacteria 1990
13 Ga0075364_10112290 3300006051 Bacteria 1819
14 Ga0075369_10007828 3300006186 Bacteria 4088
15 Ga0105244_10016122 3300009036 Bacteria 4264
16 Ga0105244_10115550 3300009036 Bacteria 1303
17 Ga0105243_10054434 3300009148 Bacteria 3177
18 Ga0105246_10005740 3300011119 Bacteria 7575
19 Ga0157370_10096675 3300013104 Bacteria 2771
20 Ga0157369_10003610 3300013105 Bacteria 18383
21 Ga0157369_10006721 3300013105 Bacteria 13270
22 Ga0157369_10437062 3300013105 Bacteria 1356
23 Ga0171462_1001 3300013250 Bacteria 1135406
24 Ga0157374_10139762 3300013296 Bacteria 2350
25 Ga0157375_10914592 3300013308 Bacteria 1021
26 Ga0207425_1009604 3300025245 Bacteria 2397
27 Ga0209646_1000013 3300025246 Bacteria 565830
28 Ga0209759_1017637 3300025256 Bacteria 1752
29 Ga0209129_1000176 3300025258 Bacteria 93584
30 Ga0209129_1027239 3300025258 Bacteria 980
31 Ga0209025_1007705 3300025294 Bacteria 7943
32 Ga0209051_1017547 3300025303 Bacteria 3195
33 Ga0207655_1004214 3300025728 Bacteria 10305
34 Ga0207709_10003288 3300025935 Bacteria 9699
35 Ga0207709_10030050 3300025935 Bacteria 3157
36 Ga0207709_10091686 3300025935 Bacteria 1987
37 Ga0307405_10032697 3300031731 Bacteria 3077
38 Ga0307405_10597297 3300031731 Bacteria 900
39 Ga0307413_10687627 3300031824 Bacteria 848
40 Ga0307406_10000509 3300031901 Bacteria 22369
41 Ga0307406_10001297 3300031901 Bacteria 14011
42 Ga0307406_10069506 3300031901 Bacteria 2302
43 Ga0307412_10736018 3300031911 Bacteria 850
44 Ga0307414_10460809 3300032004 Bacteria 1117
45 Ga0307415_100477967 3300032126 Bacteria 1084
46 Ga0395899_0016832 3300037312 Bacteria 5574
47 Ga0395899_0028771 3300037312 Bacteria 4181
48 Ga0395900_0015881 3300037418 Bacteria 7670
49 Ga0395900_0056136 3300037418 Bacteria 4054
50 Ga0395900_0062198 3300037418 Bacteria 3837
51 Ga0395900_0091679 3300037418 Bacteria 3122
52 Ga0395898_0007783 3300037466 Bacteria 11372
53 Ga0395898_0019863 3300037466 Bacteria 6833
54 Ga0395898_0055815 3300037466 Bacteria 3852
55 Ga0395898_0266188 3300037466 Bacteria 1635
56 Ga0395898_0345238 3300037466 Bacteria 1419
57 Ga0395905_0058695 3300037471 Bacteria 3598
58 Ga0395905_0391898 3300037471 Bacteria 1283
59 Ga0395905_0915799 3300037471 Bacteria 780
60 Ga0395901_0008652 3300038443 Bacteria 10284
61 Ga0395901_0146030 3300038443 Bacteria 2486
62 Ga0395901_0155059 3300038443 Bacteria 2406
63 Ga0395901_0216976 3300038443 Bacteria 2000
64 Ga0395901_0510943 3300038443 Bacteria 1222
65 Ga0395901_0589664 3300038443 Bacteria 1122
66 Ga0395901_0650340 3300038443 Bacteria 1057
67 Ga0451793_0652842 3300041452 Bacteria 1001
68 Ga0451853_0710452 3300041512 Bacteria 1091
69 Ga0451853_1947320 3300041512 Bacteria 1673
70 Ga0466972_0088739 3300044658 Bacteria 1468
71 Ga0466972_0318141 3300044658 Bacteria 727
72 Ga0466965_0000002 3300044683 Bacteria 297957
73 Ga0466965_0005445 3300044683 Bacteria 5736
74 Ga0466965_0278666 3300044683 Bacteria 902
75 Ga0466961_0250159 3300044693 Bacteria 1088
76 Ga0466970_0000017 3300044765 Bacteria 64907
77 Ga0466970_0182267 3300044765 Bacteria 1165
78 Ga0466970_0252488 3300044765 Bacteria 988
79 Ga0466957_0107246 3300044842 Bacteria 1768
80 Ga0466959_0181239 3300045049 Bacteria 1473
81 Ga0495627_004881 3300046453 Bacteria 5520
82 Ga0495580_0014653 3300046472 Bacteria 5942
83 Ga0496100_0099895 3300048903 Bacteria 1998
84 Ga0496105_0342757 3300048908 Bacteria 1195
85 Ga0496109_0009020 3300048912 Bacteria 8496
86 Ga0496110_0259666 3300048913 Bacteria 1581
87 Ga0496112_0312514 3300048915 Bacteria 1516
88 Ga0496112_0428257 3300048915 Bacteria 1262
89 Ga0496113_0192665 3300048916 Bacteria 1618
90 Ga0496113_0202488 3300048916 Bacteria 1578
91 Ga0496114_0017792 3300048917 Bacteria 5744
92 Ga0496114_0194130 3300048917 Bacteria 1777
93 Ga0496117_0000028 3300048920 Bacteria 407392
94 Ga0496117_0035615 3300048920 Bacteria 3734
95 Ga0496118_0009690 3300048921 Bacteria 9680
96 Ga0496118_0010762 3300048921 Bacteria 9016
97 Ga0496118_0064852 3300048921 Bacteria 2677
98 Ga0496118_0161127 3300048921 Bacteria 1387
99 Ga0496119_0003275 3300048922 Bacteria 16939
100 Ga0496119_0006677 3300048922 Bacteria 10612
101 Ga0496119_0020282 3300048922 Bacteria 4854
102 Ga0496119_0047852 3300048922 Bacteria 2657
103 Ga0496120_0002156 3300048923 Bacteria 20983
104 Ga0496120_0004809 3300048923 Bacteria 11063
105 Ga0496122_0021762 3300048925 Bacteria 5724
106 Ga0496122_0051903 3300048925 Bacteria 3110
107 Ga0496122_0083629 3300048925 Bacteria 2212
108 Ga0496122_0150256 3300048925 Bacteria 1439
109 Ga0496123_0013182 3300048926 Bacteria 6968
110 Ga0496124_0010149 3300048927 Bacteria 9583
111 Ga0496124_0089000 3300048927 Bacteria 2522
112 Ga0496124_0391818 3300048927 Bacteria 967
113 Ga0496125_0001414 3300048928 Bacteria 35032
114 Ga0496125_0003322 3300048928 Bacteria 19662
115 Ga0496125_0006023 3300048928 Bacteria 13265
116 Ga0496125_0007780 3300048928 Bacteria 11338
117 Ga0496125_0011868 3300048928 Bacteria 8679
118 Ga0496126_0007604 3300048929 Bacteria 11835
119 Ga0496126_0018041 3300048929 Bacteria 7011
120 Ga0496126_0741282 3300048929 Bacteria 759
121 Ga0501033_0072018 3300049570 Bacteria 2538
122 Ga0501034_0015481 3300049571 Bacteria 7836
123 Ga0501034_0053180 3300049571 Bacteria 4079
124 Ga0501034_0792929 3300049571 Bacteria 840
125 Ga0501037_0061203 3300049573 Bacteria 2745
126 Ga0501038_0002092 3300049574 Bacteria 18498
127 Ga0501046_0040107 3300049580 Bacteria 3743
128 Ga0501047_0064405 3300049581 Bacteria 3535
129 Ga0501070_0066755 3300049586 Bacteria 2979
130 Ga0501035_0228800 3300049822 Bacteria 1585
131 Ga0501044_0050099 3300049823 Bacteria 4310
132 nmdc:mga00v17_11461_c1 3300050491 Bacteria 4872
133 nmdc:mga00v17_63328_c1 3300050491 Bacteria 2277
134 nmdc:mga0yw44_19617_c1 3300050492 Bacteria 3732
135 nmdc:mga0sz30_16973_c1 3300050516 Bacteria 2898
136 Ga0500573_0138173 3300053140 Bacteria 1344
137 Ga0587084_000300 3300059477 Bacteria 3600
138 Ga0587070_003186 3300059491 Bacteria 1946
139 Ga0587070_014359 3300059491 Bacteria 1237
140 Ga0587077_002852 3300059493 Bacteria 2110
141 Ga0587083_0009058 3300059505 Bacteria 1576
142 Ga0587088_025531 3300059508 Bacteria 1020
143 Ga0587092_010691 3300059512 Bacteria 1261
144 Ga0587098_007806 3300059604 Bacteria 1122
145 Ga0587106_016856 3300059605 Bacteria 1038
146 Ga0587101_001433 3300059623 Bacteria 2056
147 Ga0587067_095722 3300059640 Bacteria 680
148 Ga0587069_001068 3300059642 Bacteria 2384
149 Ga0587072_001206 3300059643 Bacteria 3106
150 Ga0587100_000725 3300059648 Bacteria 1705
151 2588106548 2585428157 Bacteria 3018951
152 2643735129 2643221542 Bacteria 3563959
153 2643754226 2643221546 Bacteria 2910897
154 2643786777 2643221553 Bacteria 3544260
155 2643996179 2643221597 Bacteria 3347721
156 2644173291 2643221630 Bacteria 3601215
157 2730230112 2728369380 Bacteria 3620317
158 2747953818 2747842429 Bacteria 3914386
159 2758224209 2757320536 Bacteria 3629334
160 2774381515 2773857758 Bacteria 3592392
161 2774383409 2773857759 Bacteria 2963774
162 2808631551 2808606306 Bacteria 3608896
163 2808885266 2808606368 Bacteria 3174172
164 2809227042 2808606447 Bacteria 3572005
165 2812322664 2811994872 Bacteria 4121241
166 2833710498 2833709550 Bacteria 4008291
167 2844849631 2844849076 Bacteria 4091819
168 2852649615 2852646457 Bacteria 3408613
169 2852665555 2852663356 Bacteria 4090475
170 2852680401 2852677369 Bacteria 3768884
171 2857725083 2857723135 Bacteria 4217853
172 2857733579 2857729791 Bacteria 4040535
173 2897564739 2897561785 Bacteria 3256946
174 2904509799 2904509784 Bacteria 3520416
175 2906801399 2906799679 Bacteria 4031749
176 2908678985 2908678064 Bacteria 3482747
177 2919052325 2919051321 Bacteria 4210889
178 2919071333 2919069694 Bacteria 3622919
179 2919395883 2919395869 Bacteria 3704152
180 2928124619 2928121344 Bacteria 3972376
181 2939663731 2939660829 Bacteria 3784848
182 2946026504 2946024296 Bacteria 3508095
183 2946044758 2946041624 Bacteria 4191385
184 2946084617 2946080515 Bacteria 4310960
185 2966923888 2966921586 Bacteria 3092803
186 2974297823 2974294766 Bacteria 3767688
187 2974325942 2974324384 Bacteria 3750535
188 2977230889 2977228692 Bacteria 3450105
189 2977239687 2977236895 Bacteria 3569373
190 2977253598 2977251589 Bacteria 2952848
191 2977266117 2977264416 Bacteria 3750737
192 2984546041 2984542743 Bacteria 3569378
193 2995728780 2995726249 Bacteria 3470435
194 8004185647 8004182704 Bacteria 3391155
195 8016254484 8016254467 Bacteria 3797036
196 8045831251 8045830549 Bacteria 4444727
197 8055039274 8055037949 Bacteria 3337834
198 Ga0501038_0214437
199 LJQas_1006087
200 JGI24740J21852_10007232
201 JGI25154J39366_1005227
202 JGI25151J46595_10043327
203 rootH2_10280348
204 Ga0006562J51391_1007335
205 Ga0006562J51391_1007337
206 Ga0065714_10006859
207 Ga0075365_10010506
208 Ga0075364_10046582
209 Ga0075364_10094163
210 Ga0075364_10112290
211 Ga0075369_10007828
212 Ga0105244_10016122
213 Ga0105244_10115550
214 Ga0105243_10054434
215 Ga0105246_10005740
216 Ga0157370_10096675
217 Ga0157369_10003610
218 Ga0157369_10006721
219 Ga0157369_10437062
220 Ga0171462_1001
221 Ga0157374_10139762
222 Ga0157375_10914592
223 Ga0207425_1009604
224 Ga0209646_1000013
225 Ga0209759_1017637
226 Ga0209129_1000176
227 Ga0209129_1027239
228 Ga0209025_1007705
229 Ga0209051_1017547
230 Ga0207655_1004214
231 Ga0207709_10003288
232 Ga0207709_10030050
233 Ga0207709_10091686
234 Ga0307405_10032697
235 Ga0307405_10597297
236 Ga0307413_10687627
237 Ga0307406_10000509
238 Ga0307406_10001297
239 Ga0307406_10069506
240 Ga0307412_10736018
241 Ga0307414_10460809
242 Ga0307415_100477967
243 Ga0395899_0016832
244 Ga0395899_0028771
245 Ga0395900_0015881
246 Ga0395900_0056136
247 Ga0395900_0062198
248 Ga0395900_0091679
249 Ga0395898_0007783
250 Ga0395898_0019863
251 Ga0395898_0055815
252 Ga0395898_0266188
253 Ga0395898_0345238
254 Ga0395905_0058695
255 Ga0395905_0391898
256 Ga0395905_0915799
257 Ga0395901_0008652
258 Ga0395901_0146030
259 Ga0395901_0155059
260 Ga0395901_0216976
261 Ga0395901_0510943
262 Ga0395901_0589664
263 Ga0395901_0650340
264 Ga0451793_0652842
265 Ga0451853_0710452
266 Ga0451853_1947320
267 Ga0466972_0088739
268 Ga0466972_0318141
269 Ga0466965_0000002
270 Ga0466965_0005445
271 Ga0466965_0278666
272 Ga0466961_0250159
273 Ga0466970_0000017
274 Ga0466970_0182267
275 Ga0466970_0252488
276 Ga0466957_0107246
277 Ga0466959_0181239
278 Ga0495627_004881
279 Ga0495580_0014653
280 Ga0496100_0099895
281 Ga0496105_0342757
282 Ga0496109_0009020
283 Ga0496110_0259666
284 Ga0496112_0312514
285 Ga0496112_0428257
286 Ga0496113_0192665
287 Ga0496113_0202488
288 Ga0496114_0017792
289 Ga0496114_0194130
290 Ga0496117_0000028
291 Ga0496117_0035615
292 Ga0496118_0009690
293 Ga0496118_0010762
294 Ga0496118_0064852
295 Ga0496118_0161127
296 Ga0496119_0003275
297 Ga0496119_0006677
298 Ga0496119_0020282
299 Ga0496119_0047852
300 Ga0496120_0002156
301 Ga0496120_0004809
302 Ga0496122_0021762
303 Ga0496122_0051903
304 Ga0496122_0083629
305 Ga0496122_0150256
306 Ga0496123_0013182
307 Ga0496124_0010149
308 Ga0496124_0089000
309 Ga0496124_0391818
310 Ga0496125_0001414
311 Ga0496125_0003322
312 Ga0496125_0006023
313 Ga0496125_0007780
314 Ga0496125_0011868
315 Ga0496126_0007604
316 Ga0496126_0018041
317 Ga0496126_0741282
318 Ga0501033_0072018
319 Ga0501034_0015481
320 Ga0501034_0053180
321 Ga0501034_0792929
322 Ga0501037_0061203
323 Ga0501038_0002092
324 Ga0501046_0040107
325 Ga0501047_0064405
326 Ga0501070_0066755
327 Ga0501035_0228800
328 Ga0501044_0050099
329 nmdc:mga00v17_11461_c1
330 nmdc:mga00v17_63328_c1
331 nmdc:mga0yw44_19617_c1
332 nmdc:mga0sz30_16973_c1
333 Ga0500573_0138173
334 Ga0587084_000300
335 Ga0587070_003186
336 Ga0587070_014359
337 Ga0587077_002852
338 Ga0587083_0009058
339 Ga0587088_025531
340 Ga0587092_010691
341 Ga0587098_007806
342 Ga0587106_016856
343 Ga0587101_001433
344 Ga0587067_095722
345 Ga0587069_001068
346 Ga0587072_001206
347 Ga0587100_000725
348 2588106548
349 2643735129
350 2643754226
351 2643786777
352 2643996179
353 2644173291
354 2730230112
355 2747953818
356 2758224209
357 2774381515
358 2774383409
359 2808631551
360 2808885266
361 2809227042
362 2812322664
363 2833710498
364 2844849631
365 2852649615
366 2852665555
367 2852680401
368 2857725083
369 2857733579
370 2897564739
371 2904509799
372 2906801399
373 2908678985
374 2919052325
375 2919071333
376 2919395883
377 2928124619
378 2939663731
379 2946026504
380 2946044758
381 2946084617
382 2966923888
383 2974297823
384 2974325942
385 2977230889
386 2977239687
387 2977253598
388 2977266117
389 2984546041
390 2995728780
391 8004185647
392 8016254484
393 8045831251
394 8055039274

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00528

BPD_transp_1

Binding-protein-dependent transport system inner membrane component

24

229

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ymu-assembly1.cif.gz_C crystal structure of an amino acid abc transporter complex with arginines and atps 0.8144 4 210
4ymu-assembly1.cif.gz_C crystal structure of an amino acid abc transporter complex with arginines and atps 0.7837 4 210
4jbw-assembly2.cif.gz_H crystal structure of e. coli maltose transporter malfgk2 in complex with its regulatory protein eiiaglc 0.7595 12 165
4jbw-assembly1.cif.gz_F crystal structure of e. coli maltose transporter malfgk2 in complex with its regulatory protein eiiaglc 0.7535 12 165
3tuz-assembly2.cif.gz_F inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form 0.7165 6 211
ID Description Score Start End Superfamily
af_P0AFT2_3_219_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8405 2 214 1.10.3720.10
af_P45768_144_364_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8314 18 215 1.10.3720.10
af_P0AEQ6_1_218_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8306 2 212 1.10.3720.10
af_P0AFT2_3_219_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8264 2 214 1.10.3720.10
af_Q2FX86_270_484_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8245 4 213 1.10.3720.10
ID Description Score Start End GO Terms
AF-A0A2J5PXE5-F1-model_v4 Amino acid ABC transporter permease 0.9367 2 150 GO:0006865
GO:0022857
GO:0043190
AF-A0A497EJY3-F1-model_v4 Amino acid ABC transporter permease 0.9354 3 160 GO:0006865
GO:0022857
GO:0043190
AF-X0SP61-F1-model_v4 ABC transmembrane type-1 domain-containing protein 0.9232 4 160 GO:0006865
GO:0022857
GO:0043190
AF-F4N1I0-F1-model_v4 ABC transmembrane type-1 domain-containing protein 0.9152 18 160 GO:0006865
GO:0022857
GO:0043190
AF-A0A529X4A2-F1-model_v4 deleted 0.9133 2 146

Map