F303398

General Info

Members Datasets Scaffolds Average Seq Length
197 143 394 158

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_1833654|Ga0451576_1833654_69_605
Length 178
Sequence MMKPATAPKPARVAPAPAVDQVDAGFLETLIGYNARRAALAVIEVFLERMAMFELRPVDFSVLSLIGHNPGITSRQLCTTLGILPPNLVGIINTMAKRGLVTRRPHPHDGRALGLHLTPKGLKLMRDAERTAADLESEVTSSLSTAESRTLIDLLKKVYQTRQAAAARAPRRVSAGQR

Samples

Sample ID Description Type Environment
1 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
4 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
5 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
11 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
12 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
21 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
22 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
23 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
24 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
25 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
26 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
29 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
30 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
31 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
32 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
35 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
36 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
37 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
38 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
39 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
62 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
63 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
64 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
65 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
66 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
67 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
68 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
69 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
70 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
71 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
72 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
73 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
74 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
75 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
76 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
77 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
78 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
79 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
80 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
81 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
82 3300042128 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0117W_E14_070716_123 Metagenome Rhizosphere
83 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
84 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
85 3300042139 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0727L_E14_072516_1442 Metagenome Rhizosphere
86 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
87 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
88 3300042185 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515W_E14_080116_2592 Metagenome Rhizosphere
89 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
90 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
91 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
92 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
93 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
94 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
95 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
96 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
97 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
98 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
99 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
100 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
101 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
102 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
103 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
104 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
105 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
106 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
107 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
108 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
109 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
110 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
111 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
112 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
113 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
114 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
115 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
116 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
117 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
123 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
124 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
125 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
126 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
127 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
128 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
129 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
130 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
131 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
132 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
133 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
134 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
135 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
136 2818991457 Xanthomonas translucens 569 Isolate Unclassified
137 2852684882 Xanthomonas sp. JAI131 Isolate Rhizosphere
138 2881101125 Ramlibacter rhizophilus CCTCC AB2015357 Isolate Rhizosphere
139 2919704043 Hydrogenophaga palleronii 4249 Isolate Unclassified
140 2952252522 Salinicola sp. DM10 Isolate Unclassified
141 8021622325 Xanthomonas sp. LMG12462 Isolate Rhizosphere
142 8021626552 Xanthomonas sp. LMG12460 Isolate Rhizosphere
143 8021648035 Xanthomonas sp. LMG 12461 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.43
Metatranscriptomes 0
Isolates 4.57

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.69
Nodule 0
Rhizoplane 1.02
Rhizosphere 76.65
Stem 0
Stem Tuber 0
Unclassified 1.52

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451576_1833654 3300045051 Bacteria 627
2 SwRhRL2b_contig_2217276 2162886007 Bacteria 9775
3 Ga0055531_10002434 3300003794 Bacteria 12460
4 Ga0058692_1000021 3300003856 Bacteria 240308
5 Ga0065704_10071412 3300005289 Bacteria 11292
6 Ga0070658_10168442 3300005327 Bacteria 1840
7 Ga0070658_10364516 3300005327 Bacteria 1238
8 Ga0070658_10371619 3300005327 Bacteria 1226
9 Ga0070670_100000663 3300005331 Bacteria 26787
10 Ga0068869_100014673 3300005334 Bacteria 5240
11 Ga0070680_100073787 3300005336 Bacteria 2806
12 Ga0068868_100044744 3300005338 Bacteria 3461
13 Ga0070660_100353481 3300005339 Bacteria 1210
14 Ga0070660_101152075 3300005339 Unclassified 657
15 Ga0070674_100631974 3300005356 Bacteria 908
16 Ga0070659_100541235 3300005366 Bacteria 996
17 Ga0070714_100170997 3300005435 Bacteria 1972
18 Ga0070707_100220340 3300005468 Bacteria 1848
19 Ga0070679_100046123 3300005530 Bacteria 4343
20 Ga0068855_100075817 3300005563 Bacteria 3904
21 Ga0068857_101282056 3300005577 Bacteria 711
22 Ga0068862_100631839 3300005844 Bacteria 1031
23 Ga0075365_10004816 3300006038 Bacteria 7200
24 Ga0075365_10496373 3300006038 Bacteria 862
25 Ga0075368_10036327 3300006042 Bacteria 1925
26 Ga0075363_100092995 3300006048 Bacteria 1661
27 Ga0075363_100339543 3300006048 Bacteria 876
28 Ga0075367_10228676 3300006178 Bacteria 1165
29 Ga0075366_10325001 3300006195 Bacteria 943
30 Ga0075430_100201737 3300006846 Bacteria 1652
31 Ga0105251_10000014 3300009011 Bacteria 150347
32 Ga0105240_10380014 3300009093 Bacteria 1595
33 Ga0105245_10467685 3300009098 Bacteria 1272
34 Ga0105243_10001851 3300009148 Bacteria 18067
35 Ga0105241_10074982 3300009174 Bacteria 2635
36 Ga0105242_10197881 3300009176 Bacteria 1783
37 Ga0105238_10919649 3300009551 Bacteria 894
38 Ga0105238_11993540 3300009551 Bacteria 614
39 Ga0105239_10198616 3300010375 Bacteria 2246
40 Ga0157378_10627028 3300013297 Bacteria 1089
41 Ga0157376_10010373 3300014969 Bacteria 6811
42 Ga0157376_10440364 3300014969 Bacteria 1269
43 Ga0182005_1005672 3300015265 Bacteria 3882
44 Ga0209130_1019988 3300025284 Bacteria 1541
45 Ga0209758_1055797 3300025297 Bacteria 1338
46 Ga0209051_1000833 3300025303 Bacteria 31762
47 Ga0209257_1000161 3300025304 Bacteria 176089
48 Ga0207713_1002114 3300025735 Bacteria 14813
49 Ga0207705_10195980 3300025909 Bacteria 1529
50 Ga0207705_10415832 3300025909 Bacteria 1041
51 Ga0207684_10658926 3300025910 Bacteria 892
52 Ga0207654_10044045 3300025911 Bacteria 2532
53 Ga0207695_10183933 3300025913 Bacteria 2010
54 Ga0207660_10087612 3300025917 Bacteria 2301
55 Ga0207657_10167643 3300025919 Bacteria 1781
56 Ga0207652_10626004 3300025921 Bacteria 963
57 Ga0207650_10000256 3300025925 Bacteria 57620
58 Ga0207687_10233368 3300025927 Bacteria 1454
59 Ga0207687_10310874 3300025927 Bacteria 1272
60 Ga0207664_10280734 3300025929 Bacteria 1461
61 Ga0207686_10389912 3300025934 Bacteria 1058
62 Ga0207709_10001067 3300025935 Bacteria 20197
63 Ga0207669_10482199 3300025937 Bacteria 989
64 Ga0207689_10048611 3300025942 Bacteria 3499
65 Ga0207677_10129026 3300026023 Bacteria 1916
66 Ga0207702_10711336 3300026078 Bacteria 990
67 Ga0207641_11787218 3300026088 Bacteria 617
68 Ga0207674_10214445 3300026116 Bacteria 1874
69 Ga0209371_1000045 3300027312 Bacteria 316174
70 Ga0307515_10073933 3300028794 Bacteria 4569
71 Ga0307515_10684976 3300028794 Bacteria 640
72 Ga0268256_1000047 3300030500 Bacteria 316174
73 Ga0265330_10006538 3300031235 Bacteria 5762
74 Ga0265331_10055411 3300031250 Bacteria 1886
75 Ga0265316_10202212 3300031344 Bacteria 1472
76 Ga0307513_10000006 3300031456 Bacteria 470848
77 Ga0307513_10118098 3300031456 Bacteria 2627
78 Ga0307513_10296668 3300031456 Bacteria 1385
79 Ga0307408_100213738 3300031548 Bacteria 1569
80 Ga0307408_100665879 3300031548 Bacteria 932
81 Ga0265314_10020869 3300031711 Bacteria 5050
82 Ga0265314_10366615 3300031711 Bacteria 788
83 Ga0307412_11109654 3300031911 Bacteria 704
84 Ga0307412_11830606 3300031911 Bacteria 559
85 Ga0307416_100627587 3300032002 Bacteria 1157
86 Ga0307416_100716698 3300032002 Bacteria 1091
87 Ga0395899_0013557 3300037312 Bacteria 6230
88 Ga0395900_0071724 3300037418 Bacteria 3561
89 Ga0395900_0217410 3300037418 Bacteria 1928
90 Ga0395900_1007813 3300037418 Bacteria 752
91 Ga0395900_1069101 3300037418 Bacteria 725
92 Ga0395898_0076759 3300037466 Bacteria 3225
93 Ga0395898_0523746 3300037466 Bacteria 1127
94 Ga0395898_1172248 3300037466 Bacteria 700
95 Ga0395905_0000132 3300037471 Bacteria 123636
96 Ga0395905_0001182 3300037471 Bacteria 32636
97 Ga0395905_0015268 3300037471 Bacteria 7302
98 Ga0395905_0015537 3300037471 Bacteria 7234
99 Ga0395905_0018912 3300037471 Bacteria 6533
100 Ga0395905_0020265 3300037471 Bacteria 6300
101 Ga0395905_0177982 3300037471 Bacteria 1996
102 Ga0395905_0179342 3300037471 Bacteria 1988
103 Ga0395905_0345622 3300037471 Bacteria 1379
104 Ga0395905_0488473 3300037471 Bacteria 1131
105 Ga0395905_0537973 3300037471 Bacteria 1069
106 Ga0395901_0105752 3300038443 Bacteria 2954
107 Ga0395901_0586523 3300038443 Bacteria 1126
108 Ga0395901_0909147 3300038443 Bacteria 861
109 Ga0439439_0138880 3300041406 Bacteria 685
110 Ga0451807_1014072 3300041486 Bacteria 714
111 Ga0439433_0116236 3300041999 Bacteria 672
112 Ga0439449_0000461 3300042007 Bacteria 15182
113 Ga0439449_0001972 3300042007 Bacteria 8068
114 Ga0439455_0035693 3300042012 Bacteria 1256
115 Ga0450890_007268 3300042127 Bacteria 1414
116 Ga0450890_022717 3300042127 Bacteria 859
117 Ga0450897_016020 3300042128 Bacteria 769
118 Ga0450894_011505 3300042131 Bacteria 1153
119 Ga0450903_005336 3300042138 Bacteria 2152
120 Ga0450904_011846 3300042139 Bacteria 863
121 Ga0439446_0033178 3300042156 Bacteria 1499
122 Ga0450908_104444 3300042184 Unclassified 520
123 Ga0450909_010326 3300042185 Bacteria 1364
124 Ga0439464_0008746 3300042439 Bacteria 2654
125 Ga0466969_0022940 3300044656 Bacteria 3218
126 Ga0466972_0025754 3300044658 Bacteria 2914
127 Ga0466972_0180925 3300044658 Bacteria 988
128 Ga0466972_0240551 3300044658 Bacteria 847
129 Ga0466965_0002863 3300044683 Bacteria 7444
130 Ga0466965_0026925 3300044683 Bacteria 2788
131 Ga0466966_0042163 3300044684 Bacteria 2931
132 Ga0466966_0245508 3300044684 Bacteria 1079
133 Ga0466961_0014053 3300044693 Bacteria 5134
134 Ga0466964_0061607 3300044706 Unclassified 1562
135 Ga0466968_0016278 3300044735 Bacteria 2959
136 Ga0466968_0295220 3300044735 Bacteria 778
137 Ga0466970_0185429 3300044765 Bacteria 1155
138 Ga0466970_0243847 3300044765 Bacteria 1006
139 Ga0466957_0197318 3300044842 Bacteria 1321
140 Ga0466957_1175217 3300044842 Bacteria 555
141 Ga0466959_0052354 3300045049 Bacteria 2990
142 Ga0466959_0548339 3300045049 Bacteria 780
143 Ga0466959_0571396 3300045049 Bacteria 762
144 Ga0466959_0816371 3300045049 Bacteria 623
145 Ga0451576_1174510 3300045051 Bacteria 802
146 Ga0466958_0185840 3300045836 Bacteria 1320
147 Ga0466958_0440780 3300045836 Bacteria 843
148 Ga0466967_0062493 3300045976 Bacteria 3306
149 Ga0466967_0684460 3300045976 Bacteria 1015
150 Ga0495627_008551 3300046453 Bacteria 3826
151 Ga0495632_0019371 3300046519 Bacteria 3709
152 Ga0495621_0012190 3300046539 Bacteria 2677
153 Ga0495633_0001181 3300046558 Bacteria 20948
154 Ga0495656_0072949 3300046615 Bacteria 1529
155 Ga0495669_0018200 3300046684 Bacteria 3019
156 Ga0496108_1054444 3300048911 Bacteria 692
157 Ga0496117_0001200 3300048920 Bacteria 38954
158 Ga0496117_0140643 3300048920 Bacteria 1446
159 Ga0496118_0018632 3300048921 Bacteria 6246
160 Ga0496118_0226296 3300048921 Bacteria 1083
161 Ga0496119_0000274 3300048922 Bacteria 72965
162 Ga0496120_0000105 3300048923 Bacteria 140297
163 Ga0496122_0000081 3300048925 Bacteria 211119
164 Ga0496123_0000101 3300048926 Bacteria 169939
165 Ga0496124_0000277 3300048927 Bacteria 98300
166 Ga0496126_0006130 3300048929 Bacteria 13472
167 Ga0501032_0237653 3300049569 Bacteria 1184
168 Ga0501042_1113138 3300049578 Bacteria 576
169 Ga0501043_0030994 3300049579 Bacteria 4205
170 Ga0501046_0198962 3300049580 Bacteria 1491
171 Ga0501047_0106420 3300049581 Bacteria 2685
172 Ga0501074_0326857 3300049590 Bacteria 1089
173 Ga0501080_0071230 3300049742 Bacteria 3233
174 Ga0501044_0115702 3300049823 Bacteria 2687
175 nmdc:mga03n38_119046_c1 3300050490 Bacteria 1295
176 nmdc:mga03n38_290020_c1 3300050490 Bacteria 876
177 nmdc:mga0yw44_305258_c1 3300050492 Bacteria 1067
178 nmdc:mga0yw44_52028_c1 3300050492 Bacteria 2482
179 nmdc:mga0k408_251902_c1 3300050493 Bacteria 1054
180 nmdc:mga0k408_94743_c1 3300050493 Bacteria 1756
181 nmdc:mga06z11_568108_c1 3300050494 Bacteria 689
182 nmdc:mga06z11_89300_c1 3300050494 Bacteria 1670
183 nmdc:mga0qj67_159000_c1 3300050509 Bacteria 1834
184 Ga0500643_036966 3300053087 Bacteria 1456
185 Ga0500651_0001511 3300053093 Bacteria 11749
186 Ga0500569_116608 3300053109 Bacteria 886
187 Ga0500586_135748 3300053145 Bacteria 848
188 Ga0500634_0000158 3300053161 Bacteria 22954
189 2748018677 2747842501 Bacteria 5293829
190 2819663280 2818991457 Bacteria 5323295
191 2852689277 2852684882 Bacteria 5463342
192 2881105365 2881101125 Bacteria 4590519
193 2919704998 2919704043 Bacteria 5560311
194 2952255487 2952252522 Bacteria 4171745
195 8021624150 8021622325 Bacteria 4844743
196 8021629567 8021626552 Bacteria 4665214
197 8021649418 8021648035 Bacteria 4772378
198 Ga0451576_1833654
199 SwRhRL2b_contig_2217276
200 Ga0055531_10002434
201 Ga0058692_1000021
202 Ga0065704_10071412
203 Ga0070658_10168442
204 Ga0070658_10364516
205 Ga0070658_10371619
206 Ga0070670_100000663
207 Ga0068869_100014673
208 Ga0070680_100073787
209 Ga0068868_100044744
210 Ga0070660_100353481
211 Ga0070660_101152075
212 Ga0070674_100631974
213 Ga0070659_100541235
214 Ga0070714_100170997
215 Ga0070707_100220340
216 Ga0070679_100046123
217 Ga0068855_100075817
218 Ga0068857_101282056
219 Ga0068862_100631839
220 Ga0075365_10004816
221 Ga0075365_10496373
222 Ga0075368_10036327
223 Ga0075363_100092995
224 Ga0075363_100339543
225 Ga0075367_10228676
226 Ga0075366_10325001
227 Ga0075430_100201737
228 Ga0105251_10000014
229 Ga0105240_10380014
230 Ga0105245_10467685
231 Ga0105243_10001851
232 Ga0105241_10074982
233 Ga0105242_10197881
234 Ga0105238_10919649
235 Ga0105238_11993540
236 Ga0105239_10198616
237 Ga0157378_10627028
238 Ga0157376_10010373
239 Ga0157376_10440364
240 Ga0182005_1005672
241 Ga0209130_1019988
242 Ga0209758_1055797
243 Ga0209051_1000833
244 Ga0209257_1000161
245 Ga0207713_1002114
246 Ga0207705_10195980
247 Ga0207705_10415832
248 Ga0207684_10658926
249 Ga0207654_10044045
250 Ga0207695_10183933
251 Ga0207660_10087612
252 Ga0207657_10167643
253 Ga0207652_10626004
254 Ga0207650_10000256
255 Ga0207687_10233368
256 Ga0207687_10310874
257 Ga0207664_10280734
258 Ga0207686_10389912
259 Ga0207709_10001067
260 Ga0207669_10482199
261 Ga0207689_10048611
262 Ga0207677_10129026
263 Ga0207702_10711336
264 Ga0207641_11787218
265 Ga0207674_10214445
266 Ga0209371_1000045
267 Ga0307515_10073933
268 Ga0307515_10684976
269 Ga0268256_1000047
270 Ga0265330_10006538
271 Ga0265331_10055411
272 Ga0265316_10202212
273 Ga0307513_10000006
274 Ga0307513_10118098
275 Ga0307513_10296668
276 Ga0307408_100213738
277 Ga0307408_100665879
278 Ga0265314_10020869
279 Ga0265314_10366615
280 Ga0307412_11109654
281 Ga0307412_11830606
282 Ga0307416_100627587
283 Ga0307416_100716698
284 Ga0395899_0013557
285 Ga0395900_0071724
286 Ga0395900_0217410
287 Ga0395900_1007813
288 Ga0395900_1069101
289 Ga0395898_0076759
290 Ga0395898_0523746
291 Ga0395898_1172248
292 Ga0395905_0000132
293 Ga0395905_0001182
294 Ga0395905_0015268
295 Ga0395905_0015537
296 Ga0395905_0018912
297 Ga0395905_0020265
298 Ga0395905_0177982
299 Ga0395905_0179342
300 Ga0395905_0345622
301 Ga0395905_0488473
302 Ga0395905_0537973
303 Ga0395901_0105752
304 Ga0395901_0586523
305 Ga0395901_0909147
306 Ga0439439_0138880
307 Ga0451807_1014072
308 Ga0439433_0116236
309 Ga0439449_0000461
310 Ga0439449_0001972
311 Ga0439455_0035693
312 Ga0450890_007268
313 Ga0450890_022717
314 Ga0450897_016020
315 Ga0450894_011505
316 Ga0450903_005336
317 Ga0450904_011846
318 Ga0439446_0033178
319 Ga0450908_104444
320 Ga0450909_010326
321 Ga0439464_0008746
322 Ga0466969_0022940
323 Ga0466972_0025754
324 Ga0466972_0180925
325 Ga0466972_0240551
326 Ga0466965_0002863
327 Ga0466965_0026925
328 Ga0466966_0042163
329 Ga0466966_0245508
330 Ga0466961_0014053
331 Ga0466964_0061607
332 Ga0466968_0016278
333 Ga0466968_0295220
334 Ga0466970_0185429
335 Ga0466970_0243847
336 Ga0466957_0197318
337 Ga0466957_1175217
338 Ga0466959_0052354
339 Ga0466959_0548339
340 Ga0466959_0571396
341 Ga0466959_0816371
342 Ga0451576_1174510
343 Ga0466958_0185840
344 Ga0466958_0440780
345 Ga0466967_0062493
346 Ga0466967_0684460
347 Ga0495627_008551
348 Ga0495632_0019371
349 Ga0495621_0012190
350 Ga0495633_0001181
351 Ga0495656_0072949
352 Ga0495669_0018200
353 Ga0496108_1054444
354 Ga0496117_0001200
355 Ga0496117_0140643
356 Ga0496118_0018632
357 Ga0496118_0226296
358 Ga0496119_0000274
359 Ga0496120_0000105
360 Ga0496122_0000081
361 Ga0496123_0000101
362 Ga0496124_0000277
363 Ga0496126_0006130
364 Ga0501032_0237653
365 Ga0501042_1113138
366 Ga0501043_0030994
367 Ga0501046_0198962
368 Ga0501047_0106420
369 Ga0501074_0326857
370 Ga0501080_0071230
371 Ga0501044_0115702
372 nmdc:mga03n38_119046_c1
373 nmdc:mga03n38_290020_c1
374 nmdc:mga0yw44_305258_c1
375 nmdc:mga0yw44_52028_c1
376 nmdc:mga0k408_251902_c1
377 nmdc:mga0k408_94743_c1
378 nmdc:mga06z11_568108_c1
379 nmdc:mga06z11_89300_c1
380 nmdc:mga0qj67_159000_c1
381 Ga0500643_036966
382 Ga0500651_0001511
383 Ga0500569_116608
384 Ga0500586_135748
385 Ga0500634_0000158
386 2748018677
387 2819663280
388 2852689277
389 2881105365
390 2919704998
391 2952255487
392 8021624150
393 8021629567
394 8021649418

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01047

MarR

MarR family

55

113

0.96

PF12802

MarR_2

MarR family

53

112

0.96

PF13463

HTH_27

Winged helix DNA-binding domain

55

121

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
1z6r-assembly1.cif.gz_A crystal structure of mlc from escherichia coli 0.9548 65 125
4ija-assembly1.cif.gz_B structure of s. aureus methicillin resistance factor mecr2 0.953 66 124
4hob-assembly2.cif.gz_C the crystal structure of the zalpha domain from cyprinid herpes virus 3 0.9477 65 104
2wte-assembly1.cif.gz_B the structure of the crispr-associated protein, csa3, from sulfolobus solfataricus at 1.8 angstrom resolution. 0.944 62 137
2ia0-assembly1.cif.gz_A transcriptional regulatory protein pf0864 from pyrococcus furiosus a member of the asnc family (pf0864) 0.9371 62 105
ID Description Score Start End Superfamily
4ijaB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9521 66 125 1.10.10.10
2ia0B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9488 62 105 1.10.10.10
4hobC00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9478 65 104 1.10.10.10
4hobA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9457 65 104 1.10.10.10
af_P76066_81_136_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9371 68 124 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A0K0GGN9-F1-model_v4 Transcriptional regulator MarR family 0.9624 29 170 GO:0003700
GO:0006950
AF-A0A0J7XKK5-F1-model_v4 MarR family transcriptional regulator 0.9524 37 165 GO:0003700
AF-A0A0K0GGN9-F1-model_v4 Transcriptional regulator MarR family 0.9493 29 170 GO:0003700
GO:0006950
AF-A0A199YK25-F1-model_v4 deleted 0.9471 26 169
AF-A0A1B9S5J3-F1-model_v4 MarR family transcriptional regulator 0.9443 28 167 GO:0003700

Map