F303393

General Info

Members Datasets Scaffolds Average Seq Length
197 74 197 235

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_0016105|Ga0451576_0016105_1171_1932
Length 253
Sequence MPLWGGIRPLLFNKETEMQTQTLLHIPPTYPQPKVKTLPLREQPAYRVTANAAACSLSELLAAVVGGTQQIEIAEALLARFGGDIRRIYHAHVSEVASVHGVGQQTAVRIKAALSLGLKLQEPADERPVINSPADAAALVMNEMSLLQQEYLKVILLDRRNRVMDIVEVYRGSVNSSQVRIAEVFKPAVQRMASSILVLHNHPSSDPTPSPDDVVVTRAIVQAGKLLDLECLDHLVIGGGRFVSLKERGLGFP

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
7 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
8 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
9 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
10 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
11 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
12 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
13 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
14 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
15 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
16 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
21 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
22 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
23 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
24 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
26 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
27 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
28 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
29 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
34 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
35 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
36 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
37 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
38 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
39 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
40 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
41 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
42 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
43 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
44 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
45 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
46 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
47 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
48 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
49 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
50 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
51 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
52 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
53 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
54 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
55 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
56 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
57 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
58 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
59 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
60 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
61 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
62 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
63 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
64 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
65 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
66 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
67 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
68 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
69 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
70 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
71 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
72 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
73 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
74 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.51
Rhizosphere 98.98
Stem 0
Stem Tuber 0
Unclassified 0.51

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10040341 3300003203 Bacteria 1656
2 Ga0065704_10073627 3300005289 Bacteria 6943
3 Ga0065707_10087861 3300005295 Bacteria 4862
4 Ga0065707_10096497 3300005295 Bacteria 3263
5 Ga0065707_10194967 3300005295 Bacteria 1340
6 Ga0065707_10451847 3300005295 Bacteria 800
7 Ga0070680_100128613 3300005336 Bacteria 2118
8 Ga0070689_100240545 3300005340 Bacteria 1491
9 Ga0070700_100019548 3300005441 Bacteria 3911
10 Ga0070706_100113438 3300005467 Bacteria 2524
11 Ga0070706_100234659 3300005467 Bacteria 1712
12 Ga0070707_100584967 3300005468 Bacteria 1079
13 Ga0070698_100040651 3300005471 Bacteria 4777
14 Ga0070698_100066599 3300005471 Bacteria 3624
15 Ga0070698_100328855 3300005471 Bacteria 1459
16 Ga0070698_100481778 3300005471 Bacteria 1178
17 Ga0070698_100789015 3300005471 Bacteria 894
18 Ga0070699_100016486 3300005518 Bacteria 6344
19 Ga0070699_100437065 3300005518 Bacteria 1186
20 Ga0070695_100214905 3300005545 Bacteria 1382
21 Ga0070704_100015764 3300005549 Bacteria 4757
22 Ga0070704_100868190 3300005549 Unclassified 810
23 Ga0068857_100285915 3300005577 Bacteria 1518
24 Ga0068859_100423817 3300005617 Bacteria 1427
25 Ga0068862_100041009 3300005844 Bacteria 3937
26 Ga0068862_100131076 3300005844 Bacteria 2217
27 Ga0081539_10004511 3300005985 Bacteria 15308
28 Ga0081539_10041396 3300005985 Bacteria 2693
29 Ga0075427_10001939 3300006194 Bacteria 2723
30 Ga0075428_100670396 3300006844 Bacteria 1105
31 Ga0075428_100729801 3300006844 Bacteria 1055
32 Ga0075430_100258370 3300006846 Bacteria 1443
33 Ga0075430_100501493 3300006846 Bacteria 1002
34 Ga0075433_10294046 3300006852 Bacteria 1438
35 Ga0075429_100016311 3300006880 Bacteria 6440
36 Ga0075429_100085650 3300006880 Bacteria 2747
37 Ga0075429_100118028 3300006880 Bacteria 2319
38 Ga0075429_100185544 3300006880 Bacteria 1822
39 Ga0097620_100423783 3300006931 Bacteria 1427
40 Ga0105245_10344747 3300009098 Bacteria 1474
41 Ga0114129_10039988 3300009147 Bacteria 6615
42 Ga0114129_10056254 3300009147 Bacteria 5511
43 Ga0114129_10105869 3300009147 Bacteria 3886
44 Ga0114129_10326302 3300009147 Bacteria 2039
45 Ga0114129_10404811 3300009147 Bacteria 1798
46 Ga0114129_10690523 3300009147 Bacteria 1313
47 Ga0105243_10072985 3300009148 Bacteria 2779
48 Ga0105243_10174937 3300009148 Bacteria 1862
49 Ga0105242_10016575 3300009176 Bacteria 5730
50 Ga0105249_10147721 3300009553 Bacteria 2260
51 Ga0105249_10165076 3300009553 Bacteria 2143
52 Ga0105249_10261939 3300009553 Bacteria 1719
53 Ga0105246_10140284 3300011119 Bacteria 1816
54 Ga0207684_10088926 3300025910 Bacteria 2632
55 Ga0207646_10167345 3300025922 Bacteria 1985
56 Ga0207646_10190409 3300025922 Bacteria 1853
57 Ga0207674_10303931 3300026116 Bacteria 1544
58 Ga0268265_10032317 3300028380 Bacteria 3791
59 Ga0268265_10108862 3300028380 Bacteria 2257
60 Ga0265334_10114157 3300028573 Unclassified 969
61 Ga0265318_10034527 3300028577 Unclassified 1949
62 Ga0265322_10023934 3300028654 Bacteria 1746
63 Ga0265330_10170861 3300031235 Unclassified 922
64 Ga0265320_10112342 3300031240 Unclassified 1247
65 Ga0265327_10006692 3300031251 Bacteria 9129
66 Ga0265327_10015308 3300031251 Bacteria 4962
67 Ga0316579_10002251 3300031691 Bacteria 7282
68 Ga0316579_10129043 3300031691 Bacteria 1217
69 Ga0316578_10039021 3300031728 Bacteria 2742
70 Ga0307405_10320917 3300031731 Bacteria 1183
71 Ga0307405_10354773 3300031731 Bacteria 1133
72 Ga0316577_10005682 3300031733 Bacteria 6546
73 Ga0316577_10148312 3300031733 Bacteria 1322
74 Ga0316577_10373901 3300031733 Unclassified 809
75 Ga0307407_10224863 3300031903 Bacteria 1271
76 Ga0307412_10263258 3300031911 Bacteria 1346
77 Ga0316574_0144475 3300035398 Unclassified 1533
78 Ga0316582_0035943 3300036647 Unclassified 3063
79 Ga0316582_0036838 3300036647 Bacteria 3029
80 Ga0316584_0005441 3300036712 Bacteria 8545
81 Ga0316584_0242441 3300036712 Bacteria 1319
82 Ga0316584_0543751 3300036712 Unclassified 812
83 Ga0316581_0077381 3300037588 Bacteria 1022
84 Ga0400484_30976 3300038725 Bacteria 1130
85 Ga0451577_0001574 3300042876 Bacteria 29854
86 Ga0451577_0005861 3300042876 Bacteria 12420
87 Ga0451577_0014097 3300042876 Bacteria 7455
88 Ga0451577_0036801 3300042876 Unclassified 4407
89 Ga0451577_0045184 3300042876 Bacteria 3942
90 Ga0451577_0209253 3300042876 Unclassified 1762
91 Ga0451577_0220660 3300042876 Bacteria 1714
92 Ga0451577_0232960 3300042876 Bacteria 1666
93 Ga0451577_0334939 3300042876 Bacteria 1372
94 Ga0451577_0487732 3300042876 Unclassified 1119
95 Ga0451577_0515133 3300042876 Bacteria 1086
96 Ga0451577_0630075 3300042876 Bacteria 973
97 Ga0451577_0704077 3300042876 Bacteria 915
98 Ga0451577_0923908 3300042876 Unclassified 785
99 Ga0453683_0001014 3300044673 Bacteria 26341
100 Ga0453683_0012924 3300044673 Bacteria 5459
101 Ga0453683_0031434 3300044673 Unclassified 3355
102 Ga0453683_0036696 3300044673 Bacteria 3085
103 Ga0453683_0040258 3300044673 Unclassified 2935
104 Ga0453683_0062037 3300044673 Unclassified 2337
105 Ga0453683_0069879 3300044673 Bacteria 2196
106 Ga0453683_0135283 3300044673 Unclassified 1554
107 Ga0453683_0205918 3300044673 Bacteria 1249
108 Ga0453683_0217814 3300044673 Bacteria 1213
109 Ga0453683_0273058 3300044673 Bacteria 1079
110 Ga0453684_0000012 3300044712 Bacteria 1062512
111 Ga0453684_0000023 3300044712 Bacteria 857153
112 Ga0453684_0000125 3300044712 Bacteria 336972
113 Ga0453684_0000479 3300044712 Bacteria 158833
114 Ga0453684_0000843 3300044712 Bacteria 103482
115 Ga0453684_0001339 3300044712 Bacteria 72274
116 Ga0453684_0001393 3300044712 Bacteria 69974
117 Ga0453684_0001633 3300044712 Bacteria 61052
118 Ga0453684_0007655 3300044712 Bacteria 19769
119 Ga0453684_0019119 3300044712 Bacteria 10454
120 Ga0453684_0030783 3300044712 Bacteria 7569
121 Ga0453684_0054141 3300044712 Bacteria 5229
122 Ga0453684_0065875 3300044712 Unclassified 4616
123 Ga0453684_0078708 3300044712 Bacteria 4124
124 Ga0453684_0080992 3300044712 Bacteria 4051
125 Ga0453684_0160025 3300044712 Bacteria 2664
126 Ga0453684_0162125 3300044712 Bacteria 2643
127 Ga0453684_0176487 3300044712 Unclassified 2512
128 Ga0453684_0198971 3300044712 Bacteria 2337
129 Ga0453684_0222585 3300044712 Bacteria 2185
130 Ga0453684_0241734 3300044712 Unclassified 2078
131 Ga0453684_0248259 3300044712 Bacteria 2045
132 Ga0453684_0281444 3300044712 Unclassified 1896
133 Ga0453684_0282303 3300044712 Bacteria 1893
134 Ga0453684_0328654 3300044712 Bacteria 1730
135 Ga0453684_0349992 3300044712 Bacteria 1666
136 Ga0453684_0405803 3300044712 Bacteria 1525
137 Ga0453684_0420390 3300044712 Bacteria 1493
138 Ga0453684_0464219 3300044712 Bacteria 1407
139 Ga0453684_0470457 3300044712 Unclassified 1396
140 Ga0453684_0490070 3300044712 Unclassified 1362
141 Ga0453684_0608699 3300044712 Bacteria 1196
142 Ga0453684_0711935 3300044712 Bacteria 1090
143 Ga0453684_0726699 3300044712 Bacteria 1077
144 Ga0453684_0766572 3300044712 Bacteria 1043
145 Ga0453684_0810063 3300044712 Bacteria 1009
146 Ga0453684_0834492 3300044712 Bacteria 991
147 Ga0453684_1231366 3300044712 Bacteria 784
148 Ga0453684_1251436 3300044712 Bacteria 776
149 Ga0451576_0000073 3300045051 Bacteria 253094
150 Ga0451576_0000104 3300045051 Bacteria 215927
151 Ga0451576_0000152 3300045051 Bacteria 176305
152 Ga0451576_0001411 3300045051 Bacteria 41216
153 Ga0451576_0002846 3300045051 Bacteria 24873
154 Ga0451576_0003188 3300045051 Bacteria 22902
155 Ga0451576_0005210 3300045051 Bacteria 16422
156 Ga0451576_0016105 3300045051 Bacteria 8261
157 Ga0451576_0052906 3300045051 Bacteria 4255
158 Ga0451576_0109616 3300045051 Bacteria 2873
159 Ga0451576_0111591 3300045051 Bacteria 2846
160 Ga0451576_0752406 3300045051 Bacteria 1024
161 Ga0451576_1183213 3300045051 Bacteria 799
162 Ga0496108_0297768 3300048911 Bacteria 1405
163 Ga0501040_0070579 3300049576 Bacteria 2411
164 Ga0501048_0335461 3300049582 Bacteria 1078
165 Ga0501070_0676624 3300049586 Bacteria 818
166 Ga0501072_0052275 3300049588 Bacteria 3217
167 Ga0501072_0562927 3300049588 Bacteria 900
168 Ga0501073_0031255 3300049589 Bacteria 3799
169 Ga0501073_0142851 3300049589 Bacteria 1658
170 Ga0501073_0274709 3300049589 Unclassified 1163
171 Ga0501075_0031101 3300049591 Bacteria 3960
172 Ga0501076_0004819 3300049592 Bacteria 9629
173 Ga0501079_0129460 3300049741 Bacteria 1964
174 Ga0501080_0213554 3300049742 Bacteria 1768
175 Ga0501081_0034053 3300049743 Bacteria 3464
176 Ga0501081_0280963 3300049743 Bacteria 1219
177 Ga0501035_0612973 3300049822 Bacteria 886
178 Ga0501045_0196952 3300049824 Bacteria 1501
179 Ga0501045_0576362 3300049824 Bacteria 834
180 nmdc:mga05p37_11933_c1 3300050507 Bacteria 10361
181 nmdc:mga05p37_21381_c1 3300050507 Bacteria 7835
182 nmdc:mga05p37_320965_c1 3300050507 Bacteria 1833
183 nmdc:mga05p37_651603_c1 3300050507 Bacteria 1179
184 nmdc:mga05p37_66157_c1 3300050507 Bacteria 4446
185 nmdc:mga05p37_844275_c1 3300050507 Bacteria 996
186 nmdc:mga09592_271625_c1 3300050508 Bacteria 1470
187 nmdc:mga09592_6294_c1 3300050508 Bacteria 9668
188 nmdc:mga09592_65026_c1 3300050508 Bacteria 3088
189 nmdc:mga0qj67_402559_c1 3300050509 Bacteria 1104
190 nmdc:mga0qj67_407309_c1 3300050509 Bacteria 1097
191 nmdc:mga06r32_688963_c1 3300050510 Unclassified 988
192 nmdc:mga0a205_347530_c1 3300050515 Bacteria 1351
193 nmdc:mga0a205_353779_c1 3300050515 Bacteria 1336
194 Ga0501084_0002973 3300054114 Bacteria 13728
195 Ga0501084_0157878 3300054114 Bacteria 1913
196 Ga0501082_0212888 3300060353 Bacteria 1681
197 Ga0530510_0403534 3300061734 Bacteria 1031

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300042876 Ga0451577_0923908 Ga0451577_0923908_132_773 186
2 3300044712 Ga0453684_0078708 Ga0453684_0078708_3439_4071 203
3 3300042876 Ga0451577_0045184 Ga0451577_0045184_1355_2071 206
4 3300044712 Ga0453684_0054141 Ga0453684_0054141_4325_5041 206
5 3300044712 Ga0453684_0420390 Ga0453684_0420390_134_793 218
6 3300045051 Ga0451576_0052906 Ga0451576_0052906_26_688 219
7 3300005471 Ga0070698_100789015 Ga0070698_1007890152 223
8 3300045051 Ga0451576_1183213 Ga0451576_1183213_12_683 223
9 3300045051 Ga0451576_0752406 Ga0451576_0752406_85_765 225
10 3300042876 Ga0451577_0704077 Ga0451577_0704077_202_888 227
11 3300045051 Ga0451576_0000073 Ga0451576_0000073_166104_166787 227
12 3300049589 Ga0501073_0142851 Ga0501073_0142851_429_1127 227
13 3300031691 Ga0316579_10002251 Ga0316579_100022514 228
14 3300031733 Ga0316577_10005682 Ga0316577_100056823 228
15 3300035398 Ga0316574_0144475 Ga0316574_0144475_467_1153 228
16 3300036712 Ga0316584_0005441 Ga0316584_0005441_1691_2377 228
17 3300042876 Ga0451577_0001574 Ga0451577_0001574_27688_28386 228
18 3300044712 Ga0453684_0000125 Ga0453684_0000125_123526_124242 228
19 3300044712 Ga0453684_0000479 Ga0453684_0000479_109405_110103 228
20 3300044712 Ga0453684_0030783 Ga0453684_0030783_794_1528 228
21 3300044712 Ga0453684_0065875 Ga0453684_0065875_951_1649 228
22 3300044712 Ga0453684_0405803 Ga0453684_0405803_534_1232 228
23 3300045051 Ga0451576_0111591 Ga0451576_0111591_516_1214 228
24 3300009147 Ga0114129_10690523 Ga0114129_106905232 229
25 3300028654 Ga0265322_10023934 Ga0265322_100239342 229
26 3300031251 Ga0265327_10006692 Ga0265327_100066923 229
27 3300042876 Ga0451577_0220660 Ga0451577_0220660_705_1409 229
28 3300042876 Ga0451577_0487732 Ga0451577_0487732_132_845 229
29 3300044673 Ga0453683_0012924 Ga0453683_0012924_157_867 229
30 3300044673 Ga0453683_0031434 Ga0453683_0031434_1072_1782 229
31 3300044673 Ga0453683_0036696 Ga0453683_0036696_1316_2020 229
32 3300044673 Ga0453683_0205918 Ga0453683_0205918_511_1224 229
33 3300044673 Ga0453683_0273058 Ga0453683_0273058_115_819 229
34 3300044712 Ga0453684_0160025 Ga0453684_0160025_916_1635 229
35 3300044712 Ga0453684_0222585 Ga0453684_0222585_1110_1814 229
36 3300044712 Ga0453684_1251436 Ga0453684_1251436_21_737 229
37 3300045051 Ga0451576_0000104 Ga0451576_0000104_193596_194315 229
38 3300045051 Ga0451576_0000152 Ga0451576_0000152_20981_21691 229
39 3300045051 Ga0451576_0001411 Ga0451576_0001411_5417_6130 229
40 3300045051 Ga0451576_0002846 Ga0451576_0002846_18520_19233 229
41 3300045051 Ga0451576_0016105 Ga0451576_0016105_1171_1932 229
42 3300050507 nmdc:mga05p37_21381_c1 nmdc:mga05p37_21381_c1_7010_7726 229
43 3300050507 nmdc:mga05p37_651603_c1 nmdc:mga05p37_651603_c1_304_1020 229
44 3300050510 nmdc:mga06r32_688963_c1 nmdc:mga06r32_688963_c1_82_798 229
45 3300038725 Ga0400484_30976 Ga0400484_30976_30_788 230
46 3300042876 Ga0451577_0515133 Ga0451577_0515133_322_1047 230
47 3300044712 Ga0453684_0001393 Ga0453684_0001393_60574_61299 230
48 3300044712 Ga0453684_0019119 Ga0453684_0019119_2795_3565 230
49 3300031728 Ga0316578_10039021 Ga0316578_100390211 231
50 3300036647 Ga0316582_0035943 Ga0316582_0035943_222_923 232
51 3300037588 Ga0316581_0077381 Ga0316581_0077381_115_816 232
52 3300049589 Ga0501073_0031255 Ga0501073_0031255_1373_2071 232
53 3300049589 Ga0501073_0274709 Ga0501073_0274709_367_1065 232
54 3300054114 Ga0501084_0002973 Ga0501084_0002973_4342_5094 232
55 3300031733 Ga0316577_10373901 Ga0316577_103739011 233
56 3300036712 Ga0316584_0543751 Ga0316584_0543751_71_772 233
57 3300044673 Ga0453683_0040258 Ga0453683_0040258_2192_2893 233
58 3300044712 Ga0453684_0000843 Ga0453684_0000843_3648_4505 233
59 3300042876 Ga0451577_0005861 Ga0451577_0005861_387_1091 234
60 3300044673 Ga0453683_0001014 Ga0453683_0001014_13714_14424 234
61 3300044673 Ga0453683_0135283 Ga0453683_0135283_570_1274 234
62 3300044712 Ga0453684_0000012 Ga0453684_0000012_81071_81775 234
63 3300044712 Ga0453684_0198971 Ga0453684_0198971_1007_1711 234
64 3300044712 Ga0453684_0464219 Ga0453684_0464219_510_1217 234
65 3300045051 Ga0451576_0003188 Ga0451576_0003188_8438_9148 234
66 3300045051 Ga0451576_0005210 Ga0451576_0005210_10124_10828 234
67 3300003203 JGI25406J46586_10040341 JGI25406J46586_100403412 235
68 3300005289 Ga0065704_10073627 Ga0065704_100736276 235
69 3300005295 Ga0065707_10087861 Ga0065707_100878612 235
70 3300005295 Ga0065707_10096497 Ga0065707_100964971 235
71 3300005295 Ga0065707_10194967 Ga0065707_101949672 235
72 3300005295 Ga0065707_10451847 Ga0065707_104518471 235
73 3300005336 Ga0070680_100128613 Ga0070680_1001286134 235
74 3300005340 Ga0070689_100240545 Ga0070689_1002405452 235
75 3300005441 Ga0070700_100019548 Ga0070700_1000195484 235
76 3300005467 Ga0070706_100113438 Ga0070706_1001134382 235
77 3300005467 Ga0070706_100234659 Ga0070706_1002346592 235
78 3300005468 Ga0070707_100584967 Ga0070707_1005849672 235
79 3300005471 Ga0070698_100040651 Ga0070698_1000406514 235
80 3300005471 Ga0070698_100066599 Ga0070698_1000665993 235
81 3300005471 Ga0070698_100328855 Ga0070698_1003288553 235
82 3300005471 Ga0070698_100481778 Ga0070698_1004817782 235
83 3300005518 Ga0070699_100016486 Ga0070699_1000164863 235
84 3300005518 Ga0070699_100437065 Ga0070699_1004370651 235
85 3300005545 Ga0070695_100214905 Ga0070695_1002149051 235
86 3300005549 Ga0070704_100015764 Ga0070704_1000157645 235
87 3300005549 Ga0070704_100868190 Ga0070704_1008681901 235
88 3300005577 Ga0068857_100285915 Ga0068857_1002859152 235
89 3300005617 Ga0068859_100423817 Ga0068859_1004238172 235
90 3300005844 Ga0068862_100041009 Ga0068862_1000410095 235
91 3300005844 Ga0068862_100131076 Ga0068862_1001310764 235
92 3300005985 Ga0081539_10004511 Ga0081539_1000451119 235
93 3300005985 Ga0081539_10041396 Ga0081539_100413962 235
94 3300006194 Ga0075427_10001939 Ga0075427_100019392 235
95 3300006844 Ga0075428_100670396 Ga0075428_1006703963 235
96 3300006844 Ga0075428_100729801 Ga0075428_1007298012 235
97 3300006846 Ga0075430_100258370 Ga0075430_1002583702 235
98 3300006846 Ga0075430_100501493 Ga0075430_1005014931 235
99 3300006852 Ga0075433_10294046 Ga0075433_102940463 235
100 3300006880 Ga0075429_100016311 Ga0075429_1000163113 235
101 3300006880 Ga0075429_100085650 Ga0075429_1000856502 235
102 3300006880 Ga0075429_100118028 Ga0075429_1001180283 235
103 3300006880 Ga0075429_100185544 Ga0075429_1001855443 235
104 3300006931 Ga0097620_100423783 Ga0097620_1004237831 235
105 3300009098 Ga0105245_10344747 Ga0105245_103447473 235
106 3300009147 Ga0114129_10039988 Ga0114129_100399885 235
107 3300009147 Ga0114129_10056254 Ga0114129_100562543 235
108 3300009147 Ga0114129_10105869 Ga0114129_101058695 235
109 3300009147 Ga0114129_10326302 Ga0114129_103263022 235
110 3300009147 Ga0114129_10404811 Ga0114129_104048112 235
111 3300009148 Ga0105243_10072985 Ga0105243_100729854 235
112 3300009148 Ga0105243_10174937 Ga0105243_101749375 235
113 3300009176 Ga0105242_10016575 Ga0105242_100165757 235
114 3300009553 Ga0105249_10147721 Ga0105249_101477212 235
115 3300009553 Ga0105249_10165076 Ga0105249_101650762 235
116 3300009553 Ga0105249_10261939 Ga0105249_102619393 235
117 3300011119 Ga0105246_10140284 Ga0105246_101402841 235
118 3300025910 Ga0207684_10088926 Ga0207684_100889262 235
119 3300025922 Ga0207646_10167345 Ga0207646_101673452 235
120 3300025922 Ga0207646_10190409 Ga0207646_101904094 235
121 3300026116 Ga0207674_10303931 Ga0207674_103039312 235
122 3300028380 Ga0268265_10032317 Ga0268265_100323174 235
123 3300028380 Ga0268265_10108862 Ga0268265_101088622 235
124 3300028573 Ga0265334_10114157 Ga0265334_101141571 235
125 3300028577 Ga0265318_10034527 Ga0265318_100345273 235
126 3300031235 Ga0265330_10170861 Ga0265330_101708612 235
127 3300031240 Ga0265320_10112342 Ga0265320_101123422 235
128 3300031251 Ga0265327_10015308 Ga0265327_100153084 235
129 3300031691 Ga0316579_10129043 Ga0316579_101290432 235
130 3300031731 Ga0307405_10320917 Ga0307405_103209172 235
131 3300031731 Ga0307405_10354773 Ga0307405_103547732 235
132 3300031733 Ga0316577_10148312 Ga0316577_101483122 235
133 3300031903 Ga0307407_10224863 Ga0307407_102248632 235
134 3300031911 Ga0307412_10263258 Ga0307412_102632582 235
135 3300036647 Ga0316582_0036838 Ga0316582_0036838_2139_2975 235
136 3300036712 Ga0316584_0242441 Ga0316584_0242441_267_995 235
137 3300042876 Ga0451577_0014097 Ga0451577_0014097_2833_3540 235
138 3300042876 Ga0451577_0036801 Ga0451577_0036801_3599_4306 235
139 3300042876 Ga0451577_0209253 Ga0451577_0209253_21_728 235
140 3300042876 Ga0451577_0232960 Ga0451577_0232960_595_1302 235
141 3300042876 Ga0451577_0334939 Ga0451577_0334939_564_1271 235
142 3300042876 Ga0451577_0630075 Ga0451577_0630075_154_861 235
143 3300044673 Ga0453683_0062037 Ga0453683_0062037_1555_2262 235
144 3300044673 Ga0453683_0069879 Ga0453683_0069879_148_855 235
145 3300044673 Ga0453683_0217814 Ga0453683_0217814_337_1044 235
146 3300044712 Ga0453684_0000023 Ga0453684_0000023_253336_254043 235
147 3300044712 Ga0453684_0001339 Ga0453684_0001339_25226_25933 235
148 3300044712 Ga0453684_0001633 Ga0453684_0001633_203_910 235
149 3300044712 Ga0453684_0007655 Ga0453684_0007655_8615_9538 235
150 3300044712 Ga0453684_0080992 Ga0453684_0080992_2460_3221 235
151 3300044712 Ga0453684_0162125 Ga0453684_0162125_941_1714 235
152 3300044712 Ga0453684_0176487 Ga0453684_0176487_1323_2030 235
153 3300044712 Ga0453684_0241734 Ga0453684_0241734_1274_1981 235
154 3300044712 Ga0453684_0248259 Ga0453684_0248259_391_1098 235
155 3300044712 Ga0453684_0281444 Ga0453684_0281444_806_1513 235
156 3300044712 Ga0453684_0282303 Ga0453684_0282303_788_1501 235
157 3300044712 Ga0453684_0328654 Ga0453684_0328654_267_974 235
158 3300044712 Ga0453684_0349992 Ga0453684_0349992_680_1387 235
159 3300044712 Ga0453684_0470457 Ga0453684_0470457_593_1300 235
160 3300044712 Ga0453684_0490070 Ga0453684_0490070_102_809 235
161 3300044712 Ga0453684_0608699 Ga0453684_0608699_158_865 235
162 3300044712 Ga0453684_0711935 Ga0453684_0711935_304_1011 235
163 3300044712 Ga0453684_0726699 Ga0453684_0726699_36_791 235
164 3300044712 Ga0453684_0766572 Ga0453684_0766572_235_942 235
165 3300044712 Ga0453684_0810063 Ga0453684_0810063_95_802 235
166 3300044712 Ga0453684_0834492 Ga0453684_0834492_102_809 235
167 3300044712 Ga0453684_1231366 Ga0453684_1231366_55_762 235
168 3300045051 Ga0451576_0109616 Ga0451576_0109616_236_943 235
169 3300048911 Ga0496108_0297768 Ga0496108_0297768_568_1275 235
170 3300049576 Ga0501040_0070579 Ga0501040_0070579_925_1632 235
171 3300049582 Ga0501048_0335461 Ga0501048_0335461_36_743 235
172 3300049586 Ga0501070_0676624 Ga0501070_0676624_31_738 235
173 3300049588 Ga0501072_0052275 Ga0501072_0052275_27_734 235
174 3300049588 Ga0501072_0562927 Ga0501072_0562927_177_884 235
175 3300049591 Ga0501075_0031101 Ga0501075_0031101_2230_2937 235
176 3300049592 Ga0501076_0004819 Ga0501076_0004819_4275_4982 235
177 3300049741 Ga0501079_0129460 Ga0501079_0129460_1183_1890 235
178 3300049742 Ga0501080_0213554 Ga0501080_0213554_893_1621 235
179 3300049743 Ga0501081_0034053 Ga0501081_0034053_511_1218 235
180 3300049743 Ga0501081_0280963 Ga0501081_0280963_267_995 235
181 3300049822 Ga0501035_0612973 Ga0501035_0612973_135_842 235
182 3300049824 Ga0501045_0196952 Ga0501045_0196952_362_1069 235
183 3300049824 Ga0501045_0576362 Ga0501045_0576362_72_788 235
184 3300050507 nmdc:mga05p37_11933_c1 nmdc:mga05p37_11933_c1_8056_8763 235
185 3300050507 nmdc:mga05p37_320965_c1 nmdc:mga05p37_320965_c1_650_1357 235
186 3300050507 nmdc:mga05p37_66157_c1 nmdc:mga05p37_66157_c1_1923_2630 235
187 3300050507 nmdc:mga05p37_844275_c1 nmdc:mga05p37_844275_c1_57_764 235
188 3300050508 nmdc:mga09592_271625_c1 nmdc:mga09592_271625_c1_529_1236 235
189 3300050508 nmdc:mga09592_6294_c1 nmdc:mga09592_6294_c1_4558_5265 235
190 3300050508 nmdc:mga09592_65026_c1 nmdc:mga09592_65026_c1_475_1182 235
191 3300050509 nmdc:mga0qj67_402559_c1 nmdc:mga0qj67_402559_c1_371_1078 235
192 3300050509 nmdc:mga0qj67_407309_c1 nmdc:mga0qj67_407309_c1_250_957 235
193 3300050515 nmdc:mga0a205_347530_c1 nmdc:mga0a205_347530_c1_403_1110 235
194 3300050515 nmdc:mga0a205_353779_c1 nmdc:mga0a205_353779_c1_211_918 235
195 3300054114 Ga0501084_0157878 Ga0501084_0157878_680_1387 235
196 3300060353 Ga0501082_0212888 Ga0501082_0212888_612_1319 235
197 3300061734 Ga0530510_0403534 Ga0530510_0403534_313_1020 235

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04002

RadC

RadC-like JAB domain

130

250

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
2qlc-assembly5.cif.gz_E the crystal structure of dna repair protein radc from chlorobium tepidum tls 0.9346 111 231
2qlc-assembly5.cif.gz_E the crystal structure of dna repair protein radc from chlorobium tepidum tls 0.9061 111 231
3c1y-assembly1.cif.gz_A structure of bacterial dna damage sensor protein with co-purified and co-crystallized ligand 0.8188 37 101
4yxm-assembly1.cif.gz_A structure of thermotoga maritima disa d75n mutant with reaction product c-di-amp 0.8005 38 101
4h4n-assembly1.cif.gz_A 1.1 angstrom crystal structure of hypothetical protein ba_2335 from bacillus anthracis 0.7691 132 151
ID Description Score Start End Superfamily
af_P31337_89_213_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9765 108 231 3.40.140.10
af_P31337_89_213_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9613 108 231 3.40.140.10
2qlcA00 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9462 110 232 3.40.140.10
af_P25531_100_221_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9317 112 231 3.40.140.10
af_Q47685_35_158_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9312 112 231 3.40.140.10
ID Description Score Start End GO Terms
AF-A0A3D4BCK8-F1-model_v4 MPN domain-containing protein 0.9965 162 231 GO:0006508
GO:0008237
GO:0046872
AF-A0A1V5LJV7-F1-model_v4 MPN domain-containing protein 0.9788 125 231 GO:0006508
GO:0008237
GO:0046872
AF-A0A7V1LIU4-F1-model_v4 MPN domain-containing protein 0.9784 115 231 GO:0006508
GO:0008237
GO:0046872
AF-A0A840UL25-F1-model_v4 DNA repair protein RadC 0.9773 108 231 GO:0006508
GO:0008237
GO:0046872
AF-A0A0V8JGN3-F1-model_v4 DNA repair protein RadC 0.9768 109 231 GO:0006508
GO:0008237
GO:0046872

Feature Viewer

pLDDT pTM Quality
88.97 0.6 Medium
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Predicted Structure (AlphaFold2)

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