F303222

General Info

Members Datasets Scaffolds Average Seq Length
197 144 394 293

Family's Representative Sequence

Representative Sequence 3300031616|Ga0307508_10016146|Ga0307508_100161464
Length 358
Sequence MGMGRHSPGTRKVRKLRAVGLPVAGDAYVSAFRVHGMPRDPVGPETTEAEEADVTFVGEVMHTAVTAVNRSEAQVTEHASGTRTGETPLPGVEQPRAVAPRDARELSRQFFQRLTELEEGTHEYQYARNTLIEMNMSLVRFAAGRFRGRGDDMEDIVQTGMIGLIKAIDRFEVSREVEFTSFALPYIVGEIKRFFRDTTWAVHVPRRLQELRVELAKAREELASRLDRDPSVAELATLMNISENEVIEGQIASNGYNSSSLDAALTGDGPEGGEAVLADFIGVEENGLRLVEDFQSLAPLMAELSDRDREIIHMRFVEEATQSEIGERLGCSQMHVSRLIKRIITRLREGMLGELGCA

Samples

Sample ID Description Type Environment
1 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300003308 Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_20 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
6 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
7 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
8 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
9 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
10 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
11 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
12 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
13 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
14 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
15 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
16 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
17 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
18 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
19 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
20 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
21 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
22 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
23 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
24 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
25 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
26 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
27 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
28 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
29 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
30 3300041492 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_2 MetaG Metagenome Unclassified
31 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
32 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
33 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
34 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
35 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
36 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
37 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
38 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
39 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
40 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
41 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
42 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
43 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
44 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
45 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
46 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
47 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
48 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
49 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
50 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
51 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
52 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
53 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
54 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
55 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
56 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
57 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
58 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
59 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
60 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
61 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
62 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
63 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
64 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
65 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
66 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
67 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
68 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
69 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
70 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
71 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
72 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
73 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
74 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
75 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
86 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
88 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
89 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
90 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
91 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
92 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
93 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
94 2643221647 Streptomyces sp. Root369 Isolate Unclassified
95 2643221670 Streptomyces sp. Root431 Isolate Unclassified
96 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
97 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
98 2643221714 Streptomyces sp. Root264 Isolate Unclassified
99 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
100 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
101 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
102 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
103 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
104 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
105 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
106 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
107 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
108 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
109 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
110 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
111 2867428634 Streptomyces sp. RP5T Isolate Unclassified
112 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
113 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
114 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
115 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
116 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
117 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
118 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
119 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
120 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
121 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
122 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
123 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
124 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
125 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
126 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
127 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
128 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
129 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
130 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
131 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
132 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
133 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
134 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
135 3006425503 Streptomyces zingiberis PLAI1-29 Isolate Unclassified
136 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
137 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
138 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
139 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
140 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
141 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
142 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
143 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
144 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 68.53
Metatranscriptomes 2.54
Isolates 28.93

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.58
Nodule 0
Rhizoplane 0.51
Rhizosphere 68.02
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307508_10016146 3300031616 Bacteria 6799
2 JGI24739J22299_10026812 3300001989 Bacteria 2019
3 Ga0006777J48905_1031067 3300003308 Bacteria 985
4 rootH1_10003531 3300003323 Bacteria 3618
5 rootH1_10027179 3300003323 Bacteria 6316
6 JGI25160J50197_1020541 3300003354 Bacteria 1989
7 JGI25160J50197_1023842 3300003354 Bacteria 1752
8 Ga0006562J51391_1101809 3300003578 Bacteria 2618
9 Ga0081455_10083943 3300005937 Bacteria 2601
10 Ga0075367_10008219 3300006178 Bacteria 5394
11 Ga0157372_10304916 3300013307 Bacteria 1853
12 Ga0183367_1003 3300015688 Bacteria 814276
13 Ga0206355_1430519 3300020076 Bacteria 932
14 Ga0206353_10290200 3300020082 Bacteria 1185
15 Ga0224712_10098568 3300022467 Bacteria 1236
16 Ga0207426_1000495 3300025302 Bacteria 58715
17 Ga0207426_1002738 3300025302 Bacteria 10685
18 Ga0207426_1017456 3300025302 Bacteria 2551
19 Ga0207647_10018837 3300025904 Bacteria 4655
20 Ga0207667_10066710 3300025949 Bacteria 3750
21 Ga0207639_10185331 3300026041 Bacteria 1774
22 Ga0209813_10002568 3300027866 Bacteria 4167
23 Ga0307515_10100329 3300028794 Bacteria 3506
24 Ga0307515_10160252 3300028794 Bacteria 2299
25 Ga0307515_10172508 3300028794 Bacteria 2148
26 Ga0307511_10147879 3300030521 Bacteria 1358
27 Ga0307512_10080015 3300030522 Bacteria 2355
28 Ga0307512_10095056 3300030522 Bacteria 2052
29 Ga0307513_10005279 3300031456 Bacteria 17096
30 Ga0307513_10056003 3300031456 Bacteria 4214
31 Ga0307513_10120292 3300031456 Bacteria 2595
32 Ga0307508_10020863 3300031616 Bacteria 5950
33 Ga0307508_10033168 3300031616 Bacteria 4661
34 Ga0307514_10005418 3300031649 Bacteria 11402
35 Ga0307516_10000711 3300031730 Bacteria 45216
36 Ga0307516_10140240 3300031730 Bacteria 2188
37 Ga0307518_10117266 3300031838 Bacteria 1889
38 Ga0307518_10140629 3300031838 Bacteria 1684
39 Ga0395898_0024403 3300037466 Bacteria 6098
40 Ga0395898_0033711 3300037466 Bacteria 5107
41 Ga0395898_0247726 3300037466 Bacteria 1699
42 Ga0395901_0113302 3300038443 Bacteria 2848
43 Ga0439439_0000512 3300041406 Bacteria 6711
44 Ga0451833_0725557 3300041491 Bacteria 1305
45 Ga0451835_0107702 3300041492 Bacteria 1235
46 Ga0451837_0443430 3300041494 Bacteria 1290
47 Ga0451853_0076071 3300041512 Bacteria 3462
48 Ga0451853_0638197 3300041512 Bacteria 3703
49 Ga0439433_0001752 3300041999 Bacteria 4511
50 Ga0439442_012768 3300042002 Bacteria 1719
51 Ga0439448_0068195 3300042005 Bacteria 1182
52 Ga0439449_0008971 3300042007 Bacteria 3793
53 Ga0439455_0003658 3300042012 Bacteria 2967
54 Ga0450894_000419 3300042131 Bacteria 7312
55 Ga0450903_000037 3300042138 Bacteria 26562
56 Ga0450906_000059 3300042145 Bacteria 17824
57 Ga0439458_0001244 3300042157 Bacteria 6435
58 Ga0466972_0009181 3300044658 Bacteria 4967
59 Ga0466972_0069653 3300044658 Bacteria 1679
60 Ga0466965_0000305 3300044683 Bacteria 16342
61 Ga0466966_0020592 3300044684 Bacteria 4334
62 Ga0466961_0001875 3300044693 Bacteria 13061
63 Ga0466963_0000682 3300044694 Bacteria 16496
64 Ga0466964_0002659 3300044706 Bacteria 6399
65 Ga0466971_0000460 3300044719 Bacteria 15870
66 Ga0466971_0016632 3300044719 Bacteria 3249
67 Ga0466970_0003238 3300044765 Bacteria 7915
68 Ga0466957_0000404 3300044842 Bacteria 21092
69 Ga0466959_0005379 3300045049 Bacteria 8765
70 Ga0466959_0008008 3300045049 Bacteria 7445
71 Ga0466958_0001275 3300045836 Bacteria 11817
72 Ga0466967_0025010 3300045976 Bacteria 4917
73 Ga0466967_0090862 3300045976 Bacteria 2774
74 Ga0495603_0000582 3300046455 Bacteria 20529
75 Ga0495603_0002775 3300046455 Bacteria 10323
76 Ga0495629_0002488 3300046459 Bacteria 14131
77 Ga0495629_0004407 3300046459 Bacteria 10545
78 Ga0495584_0162618 3300046491 Bacteria 1135
79 Ga0495594_0000508 3300046499 Bacteria 19838
80 Ga0495594_0006364 3300046499 Bacteria 6072
81 Ga0495594_0037002 3300046499 Bacteria 2663
82 Ga0495583_0022574 3300046506 Bacteria 3205
83 Ga0495620_0008994 3300046515 Bacteria 5333
84 Ga0495668_0045029 3300046616 Bacteria 2452
85 Ga0495668_0254294 3300046616 Bacteria 962
86 Ga0495611_0032658 3300046648 Bacteria 2295
87 Ga0495611_0047164 3300046648 Bacteria 1933
88 Ga0495625_0054340 3300046660 Bacteria 2861
89 Ga0495625_0131374 3300046660 Bacteria 1696
90 Ga0495588_0061124 3300046674 Bacteria 1950
91 Ga0495613_0004896 3300046689 Bacteria 10059
92 Ga0495649_0033034 3300046694 Bacteria 2848
93 Ga0495649_0095082 3300046694 Bacteria 1586
94 Ga0495589_0031903 3300046794 Bacteria 2650
95 Ga0495581_0040281 3300047315 Bacteria 2704
96 Ga0495636_0007703 3300047318 Bacteria 4236
97 Ga0495636_0066434 3300047318 Bacteria 1533
98 Ga0495672_0113526 3300047320 Bacteria 1451
99 Ga0495676_0008763 3300047321 Bacteria 9252
100 Ga0495676_0013773 3300047321 Bacteria 7251
101 Ga0495687_023312 3300047443 Bacteria 2958
102 Ga0495687_026131 3300047443 Bacteria 2752
103 Ga0495685_003164 3300047447 Bacteria 5224
104 Ga0495685_016940 3300047447 Bacteria 2492
105 Ga0495685_031975 3300047447 Bacteria 1808
106 Ga0495685_065031 3300047447 Bacteria 1226
107 Ga0495614_0000260 3300048089 Bacteria 20593
108 Ga0495678_079771 3300049459 Bacteria 1178
109 Ga0501032_0130396 3300049569 Bacteria 1659
110 Ga0501033_0011508 3300049570 Bacteria 6772
111 Ga0501033_0054689 3300049570 Bacteria 2952
112 Ga0501033_0186618 3300049570 Bacteria 1485
113 Ga0501036_0013461 3300049572 Bacteria 6799
114 Ga0501036_0172992 3300049572 Bacteria 1819
115 Ga0501036_0336133 3300049572 Bacteria 1261
116 Ga0501037_0013354 3300049573 Bacteria 6052
117 Ga0501038_0017893 3300049574 Bacteria 6403
118 Ga0501038_0043621 3300049574 Bacteria 3899
119 Ga0501038_0134463 3300049574 Bacteria 2027
120 Ga0501042_0009386 3300049578 Bacteria 6519
121 Ga0501043_0068716 3300049579 Bacteria 2782
122 Ga0501043_0105863 3300049579 Bacteria 2209
123 Ga0501046_0006997 3300049580 Bacteria 9933
124 Ga0501047_0123348 3300049581 Bacteria 2471
125 Ga0501048_0015696 3300049582 Bacteria 5587
126 Ga0501048_0102038 3300049582 Bacteria 2024
127 Ga0501080_0026303 3300049742 Bacteria 5407
128 Ga0501035_0028463 3300049822 Bacteria 5099
129 Ga0501035_0078038 3300049822 Bacteria 2926
130 Ga0501035_0188517 3300049822 Bacteria 1774
131 Ga0501044_0006941 3300049823 Bacteria 12464
132 Ga0501044_0029612 3300049823 Bacteria 5771
133 Ga0501044_0073985 3300049823 Bacteria 3462
134 Ga0501044_0164212 3300049823 Bacteria 2195
135 nmdc:mga03n38_70790_c1 3300050490 Bacteria 1614
136 nmdc:mga07m45_59913_c1 3300050496 Bacteria 2154
137 Ga0500644_0014636 3300053088 Bacteria 2219
138 Ga0500644_0026913 3300053088 Bacteria 1784
139 Ga0466962_0001570 3300061719 Bacteria 10683
140 Ga0466962_0020507 3300061719 Bacteria 3176
141 2547408888 2547132111 Bacteria 8013147
142 2585306008 2582581313 Bacteria 10042643
143 2644265125 2643221647 Bacteria 10741251
144 2644388918 2643221670 Bacteria 6497041
145 2644429603 2643221677 Bacteria 7584031
146 2644441726 2643221678 Bacteria 9540101
147 2644441805 2643221678 Bacteria 9540101
148 2644630807 2643221714 Bacteria 9015452
149 2644630869 2643221714 Bacteria 9015452
150 2785346998 2784746763 Bacteria 9783172
151 2785366226 2784746768 Bacteria 10036182
152 2786667196 2786546132 Bacteria 10419719
153 2793984418 2791355406 Bacteria 11364898
154 2808846751 2808606359 Bacteria 9866990
155 2808846824 2808606359 Bacteria 9866990
156 2808917458 2808606375 Bacteria 9466072
157 2812361567 2811994879 Bacteria 9313447
158 2812477194 2811994917 Bacteria 7761064
159 2852641716 2852635781 Bacteria 8251373
160 2862185452 2862178590 Bacteria 8583590
161 2862282365 2862281513 Bacteria 9621493
162 2862512824 2862507626 Bacteria 9425308
163 2867430492 2867428634 Bacteria 9590268
164 2877684287 2877676314 Bacteria 9512378
165 2912723386 2912715099 Bacteria 9460473
166 2912726809 2912723979 Bacteria 8557534
167 2919473846 2919468124 Bacteria 9133025
168 2946064596 2946064051 Bacteria 8957905
169 2946072949 2946072368 Bacteria 8999607
170 2946073010 2946072368 Bacteria 8999607
171 2947224539 2947224130 Bacteria 9938529
172 2954008166 2954002825 Bacteria 9173742
173 2954389630 2954380949 Bacteria 10050426
174 2954682283 2954673503 Bacteria 9685905
175 2954690640 2954682443 Bacteria 9862841
176 2954700465 2954691527 Bacteria 10720516
177 2954701763 2954701450 Bacteria 10834262
178 2954719140 2954711539 Bacteria 10867210
179 2954729110 2954721474 Bacteria 10456478
180 2954732701 2954731030 Bacteria 10243860
181 2954748010 2954740390 Bacteria 10229294
182 2954751579 2954749733 Bacteria 10366972
183 2954767135 2954759201 Bacteria 9358192
184 2990063307 2990059506 Bacteria 9321252
185 2990089839 2990088156 Bacteria 6657676
186 2997600198 2997600082 Bacteria 9896405
187 3006398655 3006393351 Bacteria 6615579
188 3006427415 3006425503 Bacteria 6491253
189 3006498624 3006493962 Bacteria 8825450
190 8008581421 8008574985 Bacteria 7815457
191 8023624560 8023623736 Bacteria 8593882
192 8047897850 8047893842 Bacteria 11723082
193 8048361044 8048356638 Bacteria 11044339
194 8048374813 8048369669 Bacteria 11666822
195 8048383409 8048379754 Bacteria 11877923
196 8048414124 8048406513 Bacteria 8936924
197 8056834967 8056829672 Bacteria 9045328
198 Ga0307508_10016146
199 JGI24739J22299_10026812
200 Ga0006777J48905_1031067
201 rootH1_10003531
202 rootH1_10027179
203 JGI25160J50197_1020541
204 JGI25160J50197_1023842
205 Ga0006562J51391_1101809
206 Ga0081455_10083943
207 Ga0075367_10008219
208 Ga0157372_10304916
209 Ga0183367_1003
210 Ga0206355_1430519
211 Ga0206353_10290200
212 Ga0224712_10098568
213 Ga0207426_1000495
214 Ga0207426_1002738
215 Ga0207426_1017456
216 Ga0207647_10018837
217 Ga0207667_10066710
218 Ga0207639_10185331
219 Ga0209813_10002568
220 Ga0307515_10100329
221 Ga0307515_10160252
222 Ga0307515_10172508
223 Ga0307511_10147879
224 Ga0307512_10080015
225 Ga0307512_10095056
226 Ga0307513_10005279
227 Ga0307513_10056003
228 Ga0307513_10120292
229 Ga0307508_10020863
230 Ga0307508_10033168
231 Ga0307514_10005418
232 Ga0307516_10000711
233 Ga0307516_10140240
234 Ga0307518_10117266
235 Ga0307518_10140629
236 Ga0395898_0024403
237 Ga0395898_0033711
238 Ga0395898_0247726
239 Ga0395901_0113302
240 Ga0439439_0000512
241 Ga0451833_0725557
242 Ga0451835_0107702
243 Ga0451837_0443430
244 Ga0451853_0076071
245 Ga0451853_0638197
246 Ga0439433_0001752
247 Ga0439442_012768
248 Ga0439448_0068195
249 Ga0439449_0008971
250 Ga0439455_0003658
251 Ga0450894_000419
252 Ga0450903_000037
253 Ga0450906_000059
254 Ga0439458_0001244
255 Ga0466972_0009181
256 Ga0466972_0069653
257 Ga0466965_0000305
258 Ga0466966_0020592
259 Ga0466961_0001875
260 Ga0466963_0000682
261 Ga0466964_0002659
262 Ga0466971_0000460
263 Ga0466971_0016632
264 Ga0466970_0003238
265 Ga0466957_0000404
266 Ga0466959_0005379
267 Ga0466959_0008008
268 Ga0466958_0001275
269 Ga0466967_0025010
270 Ga0466967_0090862
271 Ga0495603_0000582
272 Ga0495603_0002775
273 Ga0495629_0002488
274 Ga0495629_0004407
275 Ga0495584_0162618
276 Ga0495594_0000508
277 Ga0495594_0006364
278 Ga0495594_0037002
279 Ga0495583_0022574
280 Ga0495620_0008994
281 Ga0495668_0045029
282 Ga0495668_0254294
283 Ga0495611_0032658
284 Ga0495611_0047164
285 Ga0495625_0054340
286 Ga0495625_0131374
287 Ga0495588_0061124
288 Ga0495613_0004896
289 Ga0495649_0033034
290 Ga0495649_0095082
291 Ga0495589_0031903
292 Ga0495581_0040281
293 Ga0495636_0007703
294 Ga0495636_0066434
295 Ga0495672_0113526
296 Ga0495676_0008763
297 Ga0495676_0013773
298 Ga0495687_023312
299 Ga0495687_026131
300 Ga0495685_003164
301 Ga0495685_016940
302 Ga0495685_031975
303 Ga0495685_065031
304 Ga0495614_0000260
305 Ga0495678_079771
306 Ga0501032_0130396
307 Ga0501033_0011508
308 Ga0501033_0054689
309 Ga0501033_0186618
310 Ga0501036_0013461
311 Ga0501036_0172992
312 Ga0501036_0336133
313 Ga0501037_0013354
314 Ga0501038_0017893
315 Ga0501038_0043621
316 Ga0501038_0134463
317 Ga0501042_0009386
318 Ga0501043_0068716
319 Ga0501043_0105863
320 Ga0501046_0006997
321 Ga0501047_0123348
322 Ga0501048_0015696
323 Ga0501048_0102038
324 Ga0501080_0026303
325 Ga0501035_0028463
326 Ga0501035_0078038
327 Ga0501035_0188517
328 Ga0501044_0006941
329 Ga0501044_0029612
330 Ga0501044_0073985
331 Ga0501044_0164212
332 nmdc:mga03n38_70790_c1
333 nmdc:mga07m45_59913_c1
334 Ga0500644_0014636
335 Ga0500644_0026913
336 Ga0466962_0001570
337 Ga0466962_0020507
338 2547408888
339 2585306008
340 2644265125
341 2644388918
342 2644429603
343 2644441726
344 2644441805
345 2644630807
346 2644630869
347 2785346998
348 2785366226
349 2786667196
350 2793984418
351 2808846751
352 2808846824
353 2808917458
354 2812361567
355 2812477194
356 2852641716
357 2862185452
358 2862282365
359 2862512824
360 2867430492
361 2877684287
362 2912723386
363 2912726809
364 2919473846
365 2946064596
366 2946072949
367 2946073010
368 2947224539
369 2954008166
370 2954389630
371 2954682283
372 2954690640
373 2954700465
374 2954701763
375 2954719140
376 2954729110
377 2954732701
378 2954748010
379 2954751579
380 2954767135
381 2990063307
382 2990089839
383 2997600198
384 3006398655
385 3006427415
386 3006498624
387 8008581421
388 8023624560
389 8047897850
390 8048361044
391 8048374813
392 8048383409
393 8048414124
394 8056834967

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04542

Sigma70_r2

Sigma-70 region 2

131

201

0.98

PF04545

Sigma70_r4

Sigma-70, region 4

300

349

0.98

PF04539

Sigma70_r3

Sigma-70 region 3

210

282

0.95

PF16509

KORA

TrfB plasmid transcriptional repressor

291

351

0.95

PF08281

Sigma70_r4_2

Sigma-70, region 4

294

347

0.92

Map