F301644
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 196 | 163 | 134 | 314 |
Family's Representative Sequence
| Representative Sequence | 3300025735|Ga0207713_1000836|Ga0207713_100083614 |
| Length | 365 |
| Sequence | VRAPIVKVRTIATQNRLLLHSIAENGDVHCLHQGKPNAEEQQMSRQTPLHSGFSAATTAAEVLKDRQLAGTTALVTGGHSGLGLETTRALTQAGARVIVAARDPAVARAQLSGLSNVEVYPLDLADLDSVRHLAQRLLETGVHLDILICSAGIMACPETRVGPGWEAQFATNHLGHYALVNLLWPALKGGARVVGHHASAIRWHDVQFSREYDKWLAYGQAKTANALFAVQLDTLGQAAGVRAFSLHPGMIPTPLQRYISPEEMVMLGWTDAEGNPAHPEMLKTPQQGAATQVWAATSPQLAGLGGLYCEDCDIAHRDPSDQIGFSGVKAHAIDPRQAERLWALSAQLTGIDAFQHAGTGGQPHA |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2162886007 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 | Metagenome | Rhizosphere |
| 2 | 2501025501 | Paraburkholderia silvatlantica PVA5 | Isolate | Unclassified |
| 3 | 2510917015 | Paraburkholderia silvatlantica PVA5 | Isolate | Unclassified |
| 4 | 2511231006 | Pseudomonas sp. GM17 | Isolate | Nodule |
| 5 | 2585427649 | Amycolatopsis japonica MG417-CF17, DSM 44213 | Isolate | Unclassified |
| 6 | 2597489887 | Pseudomonas chlororaphis aureofaciens 30-84 | Isolate | Rhizosphere |
| 7 | 2599185185 | Pseudomonas sp. NFPP07 | Isolate | Rhizoplane |
| 8 | 2599185239 | Burkholderia sp. NFACC38-1 | Isolate | Rhizoplane |
| 9 | 2599185240 | Burkholderia sp. NFPP32 | Isolate | Rhizoplane |
| 10 | 2599185257 | Pseudomonas sp. NFACC41-3 | Isolate | Rhizoplane |
| 11 | 2599185355 | Burkholderia sp. NFACC33-1 | Isolate | Rhizoplane |
| 12 | 2643221571 | Pseudomonas sp. Root569 | Isolate | Unclassified |
| 13 | 2643221629 | Devosia sp. Root105 | Isolate | Unclassified |
| 14 | 2643221662 | Devosia sp. Root413D1 | Isolate | Unclassified |
| 15 | 2671180172 | Pseudomonas sp. NFIX51 | Isolate | Rhizoplane |
| 16 | 2675903129 | Burkholderia pyrrocinia NFIX32 | Isolate | Rhizoplane |
| 17 | 2687453129 | Halotalea alkalilenta IHB B 13600 | Isolate | Unclassified |
| 18 | 2728369276 | Kineococcus rhizosphaerae DSM 19711 | Isolate | Rhizosphere |
| 19 | 2772190666 | Serratia surfactantfaciens YD25 | Isolate | Unclassified |
| 20 | 2808606388 | Pseudomonas sp. SJZ094 | Isolate | Rhizosphere |
| 21 | 2808606522 | Amycolatopsis sp. BJA-103 | Isolate | Unclassified |
| 22 | 2816332139 | Pseudonocardia kunmingensis DSM 45301 | Isolate | Unclassified |
| 23 | 2818991452 | Burkholderia cepacia 561 | Isolate | Unclassified |
| 24 | 2818991463 | Streptomyces argenteolus 3259 | Isolate | Rhizosphere |
| 25 | 2831864461 | Roseateles noduli HZ7 | Isolate | Nodule |
| 26 | 2855670206 | Micromonospora noduli Lupac 07 | Isolate | Nodule |
| 27 | 2855676851 | Micromonospora saelicesensis GAR05 | Isolate | Unclassified |
| 28 | 2857288857 | Micromonospora noduli ONO23 | Isolate | Unclassified |
| 29 | 2858848962 | Micromonospora saelicesensis GAR06 | Isolate | Unclassified |
| 30 | 2858882152 | Micromonospora noduli MED15 | Isolate | Nodule |
| 31 | 2858888857 | Micromonospora saelicesensis Lupac 06 | Isolate | Unclassified |
| 32 | 2858895516 | Micromonospora saelicesensis PSN13 | Isolate | Unclassified |
| 33 | 2862178590 | Streptomyces sp. SDr-06 | Isolate | Rhizosphere |
| 34 | 2864733723 | Paenibacillus sp. JGP012 | Isolate | Rhizosphere |
| 35 | 2869048445 | Micromonospora saelicesensis PSN01 | Isolate | Unclassified |
| 36 | 2869061728 | Micromonospora noduli ONO86 | Isolate | Unclassified |
| 37 | 2869068681 | Micromonospora noduli GUI43 | Isolate | Unclassified |
| 38 | 2880489317 | Micromonospora ureilytica DSM 101692 | Isolate | Unclassified |
| 39 | 2880495981 | Micromonospora vinacea DSM 101695 | Isolate | Unclassified |
| 40 | 2881412998 | Achromobacter aloeverae AVA-1 | Isolate | Unclassified |
| 41 | 2889042446 | Paenibacillus sp. 37 | Isolate | Rhizosphere |
| 42 | 2891562705 | Microbispora tritici MT50 | Isolate | Unclassified |
| 43 | 2904490793 | Paenibacillus sp. 1295 | Isolate | Rhizosphere |
| 44 | 2904564687 | Burkholderia sp. 571 | Isolate | Unclassified |
| 45 | 2904571731 | Burkholderia cenocepacia 574 | Isolate | Unclassified |
| 46 | 2919160200 | Paenibacillus sp. 2003 | Isolate | Unclassified |
| 47 | 2928170801 | Burkholderia sp. 572 | Isolate | Unclassified |
| 48 | 2928536128 | Burkholderia sola 565 | Isolate | Unclassified |
| 49 | 2931384279 | Paenibacillus sp. DR312 | Isolate | Rhizosphere |
| 50 | 2937967321 | Serratia sp. YC16 | Isolate | Unclassified |
| 51 | 2939679117 | Paenibacillus sp. 4624 | Isolate | Rhizosphere |
| 52 | 2945991243 | Paenibacillus sp. B21a W2I17 | Isolate | Rhizosphere |
| 53 | 2946053406 | Paenibacillus sp. W4I10 | Isolate | Rhizosphere |
| 54 | 2990044586 | Streptomyces sedi JCM 16909 | Isolate | Unclassified |
| 55 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 56 | 3300003758 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 | Metagenome | Endosphere |
| 57 | 3300003760 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 | Metagenome | Endosphere |
| 58 | 3300003761 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 | Metagenome | Endosphere |
| 59 | 3300003762 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 | Metagenome | Endosphere |
| 60 | 3300003763 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 | Metagenome | Endosphere |
| 61 | 3300003790 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 | Metagenome | Endosphere |
| 62 | 3300003792 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 | Metagenome | Endosphere |
| 63 | 3300003856 | Agave microbial communities from Guanajuato, Mexico - At.Am.rz | Metagenome | Rhizosphere |
| 64 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 65 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 66 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 67 | 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Metagenome | Rhizosphere |
| 68 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 69 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 70 | 3300009011 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG | Metagenome | Rhizosphere |
| 71 | 3300009036 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG | Metagenome | Rhizosphere |
| 72 | 3300009092 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG | Metagenome | Rhizosphere |
| 73 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 74 | 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Metagenome | Rhizosphere |
| 75 | 3300009988 | Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_233 metaG | Metagenome | Rhizosphere |
| 76 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 77 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 78 | 3300015262 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG | Metagenome | Rhizosphere |
| 79 | 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Metagenome | Rhizosphere |
| 80 | 3300025225 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 81 | 3300025228 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 82 | 3300025229 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 83 | 3300025233 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 84 | 3300025242 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 85 | 3300025254 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 86 | 3300025272 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 87 | 3300025273 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 88 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 89 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 90 | 3300025303 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 91 | 3300025711 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 92 | 3300025728 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 93 | 3300025735 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 94 | 3300025900 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 95 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 96 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 97 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 98 | 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 99 | 3300027312 | Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 100 | 3300030500 | Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) | Metagenome | Rhizosphere |
| 101 | 3300030521 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM | Metagenome | Unclassified |
| 102 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 103 | 3300031649 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM | Metagenome | Unclassified |
| 104 | 3300031730 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM | Metagenome | Unclassified |
| 105 | 3300031838 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM | Metagenome | Unclassified |
| 106 | 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Metagenome | Rhizosphere |
| 107 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 108 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 109 | 3300042016 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 | Metagenome | Rhizosphere |
| 110 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 111 | 3300046452 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere | Metagenome | Rhizosphere |
| 112 | 3300046453 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere | Metagenome | Rhizosphere |
| 113 | 3300046460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere | Metagenome | Rhizosphere |
| 114 | 3300046471 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere | Metagenome | Rhizosphere |
| 115 | 3300046474 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere | Metagenome | Rhizosphere |
| 116 | 3300046499 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere | Metagenome | Rhizosphere |
| 117 | 3300046501 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere | Metagenome | Rhizosphere |
| 118 | 3300046513 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere | Metagenome | Rhizosphere |
| 119 | 3300046518 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere | Metagenome | Rhizosphere |
| 120 | 3300046522 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere | Metagenome | Rhizosphere |
| 121 | 3300046528 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere | Metagenome | Rhizosphere |
| 122 | 3300046530 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere | Metagenome | Rhizosphere |
| 123 | 3300046538 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere | Metagenome | Rhizosphere |
| 124 | 3300046648 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere | Metagenome | Rhizosphere |
| 125 | 3300046683 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere | Metagenome | Rhizosphere |
| 126 | 3300046691 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere | Metagenome | Rhizosphere |
| 127 | 3300046794 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere | Metagenome | Rhizosphere |
| 128 | 3300047318 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere | Metagenome | Rhizosphere |
| 129 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 130 | 3300047469 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere | Metagenome | Rhizosphere |
| 131 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 132 | 3300048906 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 | Metagenome | Rhizoplane |
| 133 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 134 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 135 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 136 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 137 | 3300048923 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 | Metagenome | Unclassified |
| 138 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 139 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 140 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 141 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 142 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 143 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 144 | 3300049460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere | Metagenome | Rhizosphere |
| 145 | 3300049569 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 146 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 147 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 148 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 149 | 3300049824 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 150 | 3300050492 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation | Metagenome | Endosphere |
| 151 | 3300053105 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 endosphere | Metagenome | Endosphere |
| 152 | 3300053107 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere | Metagenome | Endosphere |
| 153 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 154 | 3300053158 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere | Metagenome | Endosphere |
| 155 | 641736154 | Burkholderia ambifaria IOP40-10 | Isolate | Rhizosphere |
| 156 | 8004592986 | Serratia sp. S119 | Isolate | Unclassified |
| 157 | 8018845410 | Burkholderia reimsis BE51 | Isolate | Rhizosphere |
| 158 | 8020938398 | Burkholderia sp. BE12 | Isolate | Rhizosphere |
| 159 | 8020953355 | Burkholderia sp. BE24 | Isolate | Rhizosphere |
| 160 | 8021120328 | Burkholderia sp. LS-044 | Isolate | Rhizosphere |
| 161 | 8054727385 | Micromonospora alfalfae MED01 | Isolate | Nodule |
| 162 | 8054734606 | Micromonospora hortensis NIE111 | Isolate | Nodule |
| 163 | 8057568493 | Actinorhabdospora filicis NBRC 111898 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 68.37 |
| Metatranscriptomes | 0 |
| Isolates | 31.63 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 14.29 |
| Nodule | 3.06 |
| Rhizoplane | 5.1 |
| Rhizosphere | 43.88 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 33.67 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | SwRhRL2b_contig_1953019 | 2162886007 | Bacteria | 2130 |
| 2 | rootH1_10154456 | 3300003323 | Bacteria | 1967 |
| 3 | Ga0055532_1000137 | 3300003758 | Bacteria | 71979 |
| 4 | Ga0055532_1000167 | 3300003758 | Bacteria | 55832 |
| 5 | Ga0055527_1001787 | 3300003760 | Bacteria | 4107 |
| 6 | Ga0055527_1004109 | 3300003760 | Bacteria | 2044 |
| 7 | Ga0055535_1000126 | 3300003761 | Bacteria | 81550 |
| 8 | Ga0055542_1000169 | 3300003762 | Bacteria | 81550 |
| 9 | Ga0055529_1000172 | 3300003763 | Bacteria | 89025 |
| 10 | Ga0055528_1006863 | 3300003790 | Bacteria | 5113 |
| 11 | Ga0055540_1011561 | 3300003792 | Bacteria | 2836 |
| 12 | Ga0058692_1008658 | 3300003856 | Bacteria | 2617 |
| 13 | Ga0065165_1000373 | 3300005262 | Bacteria | 72986 |
| 14 | Ga0065704_10082432 | 3300005289 | Bacteria | 3600 |
| 15 | Ga0070668_100000663 | 3300005347 | Bacteria | 23311 |
| 16 | Ga0070675_100115851 | 3300005354 | Bacteria | 2272 |
| 17 | Ga0068853_100012666 | 3300005539 | Bacteria | 6867 |
| 18 | Ga0081539_10000242 | 3300005985 | Bacteria | 127897 |
| 19 | Ga0105251_10000710 | 3300009011 | Bacteria | 30647 |
| 20 | Ga0105251_10029344 | 3300009011 | Bacteria | 2771 |
| 21 | Ga0105244_10000615 | 3300009036 | Bacteria | 31587 |
| 22 | Ga0105244_10026832 | 3300009036 | Bacteria | 3112 |
| 23 | Ga0105250_10000034 | 3300009092 | Bacteria | 157547 |
| 24 | Ga0105250_10001476 | 3300009092 | Bacteria | 12721 |
| 25 | Ga0105240_10002714 | 3300009093 | Bacteria | 28107 |
| 26 | Ga0105247_10000387 | 3300009101 | Bacteria | 37452 |
| 27 | Ga0105035_100597 | 3300009988 | Bacteria | 2235 |
| 28 | Ga0157371_10000727 | 3300013102 | Bacteria | 38538 |
| 29 | Ga0163162_10029629 | 3300013306 | Bacteria | 5418 |
| 30 | Ga0182007_10002628 | 3300015262 | Bacteria | 8841 |
| 31 | Ga0163161_10000002 | 3300017792 | Bacteria | 411983 |
| 32 | Ga0209566_100272 | 3300025225 | Bacteria | 48279 |
| 33 | Ga0209672_100025 | 3300025228 | Bacteria | 350006 |
| 34 | Ga0209672_106633 | 3300025228 | Bacteria | 1863 |
| 35 | Ga0209147_100032 | 3300025229 | Bacteria | 350006 |
| 36 | Ga0209147_100143 | 3300025229 | Bacteria | 110480 |
| 37 | Ga0209437_100249 | 3300025233 | Bacteria | 85649 |
| 38 | Ga0209258_100050 | 3300025242 | Bacteria | 350006 |
| 39 | Ga0209148_1000060 | 3300025254 | Bacteria | 350006 |
| 40 | Ga0209455_1000055 | 3300025272 | Bacteria | 350006 |
| 41 | Ga0209673_1000044 | 3300025273 | Bacteria | 290647 |
| 42 | Ga0209564_1006070 | 3300025295 | Bacteria | 6653 |
| 43 | Ga0207426_1008056 | 3300025302 | Bacteria | 4319 |
| 44 | Ga0209051_1001094 | 3300025303 | Bacteria | 25013 |
| 45 | Ga0207696_1000009 | 3300025711 | Bacteria | 564405 |
| 46 | Ga0207696_1000107 | 3300025711 | Bacteria | 157537 |
| 47 | Ga0207655_1000054 | 3300025728 | Bacteria | 281894 |
| 48 | Ga0207655_1089498 | 3300025728 | Bacteria | 1087 |
| 49 | Ga0207713_1000836 | 3300025735 | Bacteria | 28375 |
| 50 | Ga0207710_10000015 | 3300025900 | Bacteria | 393018 |
| 51 | Ga0207695_10000372 | 3300025913 | Bacteria | 101840 |
| 52 | Ga0207667_10077415 | 3300025949 | Bacteria | 3449 |
| 53 | Ga0207668_10004348 | 3300025972 | Bacteria | 8321 |
| 54 | Ga0207677_10023730 | 3300026023 | Bacteria | 3795 |
| 55 | Ga0209371_1000067 | 3300027312 | Bacteria | 210294 |
| 56 | Ga0268256_1000078 | 3300030500 | Bacteria | 176504 |
| 57 | Ga0307511_10099662 | 3300030521 | Bacteria | 1916 |
| 58 | Ga0307513_10000005 | 3300031456 | Bacteria | 553227 |
| 59 | Ga0307514_10163579 | 3300031649 | Bacteria | 1468 |
| 60 | Ga0307516_10288950 | 3300031730 | Bacteria | 1319 |
| 61 | Ga0307518_10000121 | 3300031838 | Bacteria | 55066 |
| 62 | Ga0307411_10012778 | 3300032005 | Bacteria | 4601 |
| 63 | Ga0307415_100041688 | 3300032126 | Bacteria | 3050 |
| 64 | Ga0395898_0437221 | 3300037466 | Bacteria | 1246 |
| 65 | Ga0439463_001917 | 3300042016 | Bacteria | 5395 |
| 66 | Ga0466972_0012076 | 3300044658 | Bacteria | 4339 |
| 67 | Ga0495617_000094 | 3300046452 | Bacteria | 62660 |
| 68 | Ga0495627_000042 | 3300046453 | Bacteria | 189845 |
| 69 | Ga0495638_0010130 | 3300046460 | Bacteria | 6564 |
| 70 | Ga0495650_0000541 | 3300046471 | Bacteria | 53972 |
| 71 | Ga0495605_0002072 | 3300046474 | Bacteria | 12635 |
| 72 | Ga0495605_0044290 | 3300046474 | Bacteria | 2201 |
| 73 | Ga0495594_0010548 | 3300046499 | Bacteria | 4792 |
| 74 | Ga0495607_0000436 | 3300046501 | Bacteria | 42138 |
| 75 | Ga0495607_0012896 | 3300046501 | Bacteria | 5496 |
| 76 | Ga0495616_0043402 | 3300046513 | Bacteria | 2284 |
| 77 | Ga0495631_0021777 | 3300046518 | Bacteria | 2983 |
| 78 | Ga0495643_0000733 | 3300046522 | Bacteria | 37388 |
| 79 | Ga0495642_0000080 | 3300046528 | Bacteria | 57160 |
| 80 | Ga0495654_0040944 | 3300046530 | Bacteria | 2306 |
| 81 | Ga0495609_0000218 | 3300046538 | Bacteria | 57196 |
| 82 | Ga0495611_0000343 | 3300046648 | Bacteria | 30338 |
| 83 | Ga0495611_0124970 | 3300046648 | Bacteria | 1200 |
| 84 | Ga0495658_0030963 | 3300046683 | Bacteria | 2910 |
| 85 | Ga0495670_0097101 | 3300046691 | Bacteria | 1514 |
| 86 | Ga0495589_0000333 | 3300046794 | Bacteria | 36998 |
| 87 | Ga0495636_0000027 | 3300047318 | Bacteria | 62083 |
| 88 | Ga0495672_0000326 | 3300047320 | Bacteria | 62915 |
| 89 | Ga0495672_0051222 | 3300047320 | Bacteria | 2433 |
| 90 | Ga0495673_0000569 | 3300047469 | Bacteria | 37420 |
| 91 | Ga0496102_0010146 | 3300048905 | Bacteria | 8099 |
| 92 | Ga0496103_0042880 | 3300048906 | Bacteria | 2785 |
| 93 | Ga0496103_0051162 | 3300048906 | Bacteria | 2557 |
| 94 | Ga0496116_0000015 | 3300048919 | Bacteria | 560702 |
| 95 | Ga0496116_0008186 | 3300048919 | Bacteria | 9123 |
| 96 | Ga0496116_0029509 | 3300048919 | Bacteria | 3953 |
| 97 | Ga0496117_0011325 | 3300048920 | Bacteria | 7994 |
| 98 | Ga0496117_0049641 | 3300048920 | Bacteria | 2982 |
| 99 | Ga0496117_0053143 | 3300048920 | Bacteria | 2848 |
| 100 | Ga0496118_0000126 | 3300048921 | Bacteria | 135644 |
| 101 | Ga0496118_0015932 | 3300048921 | Bacteria | 6925 |
| 102 | Ga0496118_0047017 | 3300048921 | Bacteria | 3350 |
| 103 | Ga0496118_0069069 | 3300048921 | Bacteria | 2561 |
| 104 | Ga0496119_0001146 | 3300048922 | Bacteria | 33275 |
| 105 | Ga0496119_0002260 | 3300048922 | Bacteria | 21408 |
| 106 | Ga0496119_0008142 | 3300048922 | Bacteria | 9278 |
| 107 | Ga0496119_0055258 | 3300048922 | Bacteria | 2412 |
| 108 | Ga0496120_0000510 | 3300048923 | Bacteria | 60563 |
| 109 | Ga0496120_0001006 | 3300048923 | Bacteria | 37957 |
| 110 | Ga0496120_0001526 | 3300048923 | Bacteria | 27270 |
| 111 | Ga0496120_0073742 | 3300048923 | Bacteria | 1866 |
| 112 | Ga0496121_0020025 | 3300048924 | Bacteria | 6651 |
| 113 | Ga0496122_0041282 | 3300048925 | Bacteria | 3650 |
| 114 | Ga0496122_0092468 | 3300048925 | Bacteria | 2056 |
| 115 | Ga0496123_0035804 | 3300048926 | Bacteria | 3530 |
| 116 | Ga0496124_0000008 | 3300048927 | Bacteria | 864372 |
| 117 | Ga0496124_0000058 | 3300048927 | Bacteria | 242191 |
| 118 | Ga0496125_0006800 | 3300048928 | Bacteria | 12280 |
| 119 | Ga0496125_0015317 | 3300048928 | Bacteria | 7421 |
| 120 | Ga0496125_0036976 | 3300048928 | Bacteria | 4251 |
| 121 | Ga0496125_0187311 | 3300048928 | Bacteria | 1371 |
| 122 | Ga0496126_0027541 | 3300048929 | Bacteria | 5426 |
| 123 | Ga0495682_0003240 | 3300049460 | Bacteria | 7296 |
| 124 | Ga0495682_0036694 | 3300049460 | Bacteria | 1804 |
| 125 | Ga0501032_0034758 | 3300049569 | Bacteria | 3448 |
| 126 | Ga0501034_0274001 | 3300049571 | Bacteria | 1628 |
| 127 | Ga0501036_0112159 | 3300049572 | Bacteria | 2304 |
| 128 | Ga0501047_0059622 | 3300049581 | Bacteria | 3684 |
| 129 | Ga0501045_0042032 | 3300049824 | Bacteria | 3327 |
| 130 | nmdc:mga0yw44_25144_c1 | 3300050492 | Bacteria | 3380 |
| 131 | Ga0500557_003609 | 3300053105 | Bacteria | 3105 |
| 132 | Ga0500560_005258 | 3300053107 | Bacteria | 2847 |
| 133 | Ga0500622_0012257 | 3300053156 | Bacteria | 4648 |
| 134 | Ga0500627_0098556 | 3300053158 | Bacteria | 1311 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300046452 | Ga0495617_000094 | Ga0495617_000094_26169_26963 | 262 |
| 2 | 3300046471 | Ga0495650_0000541 | Ga0495650_0000541_25580_26374 | 262 |
| 3 | 3300046474 | Ga0495605_0002072 | Ga0495605_0002072_11104_11898 | 262 |
| 4 | 3300046501 | Ga0495607_0000436 | Ga0495607_0000436_35874_36668 | 262 |
| 5 | 3300046522 | Ga0495643_0000733 | Ga0495643_0000733_35857_36651 | 262 |
| 6 | 3300046530 | Ga0495654_0040944 | Ga0495654_0040944_91_885 | 262 |
| 7 | 3300046648 | Ga0495611_0000343 | Ga0495611_0000343_2877_3671 | 262 |
| 8 | 3300046794 | Ga0495589_0000333 | Ga0495589_0000333_35467_36261 | 262 |
| 9 | 3300047318 | Ga0495636_0000027 | Ga0495636_0000027_35838_36632 | 262 |
| 10 | 3300047320 | Ga0495672_0000326 | Ga0495672_0000326_26196_26990 | 262 |
| 11 | 3300047469 | Ga0495673_0000569 | Ga0495673_0000569_738_1532 | 262 |
| 12 | 3300049460 | Ga0495682_0003240 | Ga0495682_0003240_3788_4582 | 262 |
| 13 | iso_pu_bacteria | 2808606388 | 2808995618 | 276 |
| 14 | 3300048925 | Ga0496122_0092468 | Ga0496122_0092468_41_913 | 280 |
| 15 | 3300047320 | Ga0495672_0051222 | Ga0495672_0051222_1244_2248 | 290 |
| 16 | 3300005354 | Ga0070675_100115851 | Ga0070675_1001158511 | 295 |
| 17 | 3300003856 | Ga0058692_1008658 | Ga0058692_10086582 | 296 |
| 18 | 3300027312 | Ga0209371_1000067 | Ga0209371_1000067134 | 296 |
| 19 | 3300030500 | Ga0268256_1000078 | Ga0268256_1000078140 | 296 |
| 20 | 3300031649 | Ga0307514_10163579 | Ga0307514_101635791 | 296 |
| 21 | 3300044658 | Ga0466972_0012076 | Ga0466972_0012076_1111_2097 | 296 |
| 22 | 3300025233 | Ga0209437_100249 | Ga0209437_10024971 | 297 |
| 23 | 3300032005 | Ga0307411_10012778 | Ga0307411_100127784 | 298 |
| 24 | iso_pu_bacteria | 2855676851 | 2855677581 | 299 |
| 25 | iso_pu_bacteria | 2858848962 | 2858852909 | 299 |
| 26 | iso_pu_bacteria | 2858888857 | 2858891358 | 299 |
| 27 | iso_pu_bacteria | 2858895516 | 2858901413 | 299 |
| 28 | iso_pu_bacteria | 2869048445 | 2869051869 | 299 |
| 29 | iso_pu_bacteria | 2880489317 | 2880490020 | 299 |
| 30 | iso_pu_bacteria | 8054727385 | 8054730446 | 299 |
| 31 | iso_pu_bacteria | 2855670206 | 2855671936 | 301 |
| 32 | iso_pu_bacteria | 2857288857 | 2857291567 | 301 |
| 33 | iso_pu_bacteria | 2858882152 | 2858885566 | 301 |
| 34 | iso_pu_bacteria | 2869061728 | 2869065301 | 301 |
| 35 | iso_pu_bacteria | 2869068681 | 2869069955 | 301 |
| 36 | iso_pu_bacteria | 2880495981 | 2880499682 | 301 |
| 37 | iso_pu_bacteria | 8054734606 | 8054738676 | 301 |
| 38 | 3300046648 | Ga0495611_0124970 | Ga0495611_0124970_215_1177 | 302 |
| 39 | 3300003758 | Ga0055532_1000137 | Ga0055532_100013730 | 304 |
| 40 | 3300003790 | Ga0055528_1006863 | Ga0055528_10068634 | 304 |
| 41 | 3300025229 | Ga0209147_100143 | Ga0209147_10014335 | 304 |
| 42 | 3300025273 | Ga0209673_1000044 | Ga0209673_100004476 | 304 |
| 43 | 3300025295 | Ga0209564_1006070 | Ga0209564_10060706 | 304 |
| 44 | 3300032126 | Ga0307415_100041688 | Ga0307415_1000416882 | 304 |
| 45 | iso_pu_bacteria | 2891562705 | 2891568279 | 304 |
| 46 | 3300025949 | Ga0207667_10077415 | Ga0207667_100774152 | 306 |
| 47 | 3300048919 | Ga0496116_0029509 | Ga0496116_0029509_2258_3223 | 306 |
| 48 | 3300048920 | Ga0496117_0049641 | Ga0496117_0049641_1367_2332 | 306 |
| 49 | 3300048921 | Ga0496118_0047017 | Ga0496118_0047017_1233_2198 | 306 |
| 50 | 3300005985 | Ga0081539_10000242 | Ga0081539_10000242130 | 307 |
| 51 | 3300048919 | Ga0496116_0008186 | Ga0496116_0008186_441_1430 | 310 |
| 52 | iso_pu_bacteria | 2990044586 | 2990045346 | 310 |
| 53 | 3300009011 | Ga0105251_10029344 | Ga0105251_100293443 | 311 |
| 54 | 3300009092 | Ga0105250_10001476 | Ga0105250_1000147612 | 311 |
| 55 | 3300009093 | Ga0105240_10002714 | Ga0105240_1000271426 | 311 |
| 56 | 3300009101 | Ga0105247_10000387 | Ga0105247_100003876 | 311 |
| 57 | 3300017792 | Ga0163161_10000002 | Ga0163161_10000002155 | 311 |
| 58 | 3300025711 | Ga0207696_1000009 | Ga0207696_1000009218 | 311 |
| 59 | 3300025900 | Ga0207710_10000015 | Ga0207710_10000015307 | 311 |
| 60 | 3300025913 | Ga0207695_10000372 | Ga0207695_1000037264 | 311 |
| 61 | 3300046453 | Ga0495627_000042 | Ga0495627_000042_45290_46276 | 311 |
| 62 | 3300048906 | Ga0496103_0042880 | Ga0496103_0042880_267_1253 | 311 |
| 63 | 3300048919 | Ga0496116_0000015 | Ga0496116_0000015_240627_241613 | 311 |
| 64 | 3300048920 | Ga0496117_0053143 | Ga0496117_0053143_960_1946 | 311 |
| 65 | 3300048921 | Ga0496118_0069069 | Ga0496118_0069069_250_1236 | 311 |
| 66 | 3300050492 | nmdc:mga0yw44_25144_c1 | nmdc:mga0yw44_25144_c1_283_1227 | 311 |
| 67 | 3300031456 | Ga0307513_10000005 | Ga0307513_10000005332 | 312 |
| 68 | iso_pu_bacteria | 2585427649 | 2586064846 | 312 |
| 69 | 3300025728 | Ga0207655_1000054 | Ga0207655_1000054202 | 313 |
| 70 | 3300031730 | Ga0307516_10288950 | Ga0307516_102889502 | 313 |
| 71 | 3300042016 | Ga0439463_001917 | Ga0439463_001917_1187_2143 | 313 |
| 72 | iso_pu_bacteria | 2643221629 | 2644169800 | 313 |
| 73 | iso_pu_bacteria | 2643221662 | 2644350435 | 313 |
| 74 | iso_pu_bacteria | 2728369276 | 2729908965 | 313 |
| 75 | iso_pu_bacteria | 2808606522 | 2809585915 | 313 |
| 76 | 3300009036 | Ga0105244_10000615 | Ga0105244_1000061510 | 314 |
| 77 | 3300048922 | Ga0496119_0008142 | Ga0496119_0008142_6274_7242 | 314 |
| 78 | 3300048923 | Ga0496120_0001006 | Ga0496120_0001006_10434_11402 | 314 |
| 79 | 3300048927 | Ga0496124_0000058 | Ga0496124_0000058_21814_22782 | 314 |
| 80 | iso_pu_bacteria | 2511231006 | 2511267231 | 314 |
| 81 | iso_pu_bacteria | 2597489887 | 2597858316 | 314 |
| 82 | iso_pu_bacteria | 2599185185 | 2599486297 | 314 |
| 83 | iso_pu_bacteria | 2599185239 | 2599737721 | 314 |
| 84 | iso_pu_bacteria | 2599185240 | 2599744991 | 314 |
| 85 | iso_pu_bacteria | 2599185257 | 2599802921 | 314 |
| 86 | iso_pu_bacteria | 2599185355 | 2600206828 | 314 |
| 87 | iso_pu_bacteria | 2671180172 | 2671769457 | 314 |
| 88 | iso_pu_bacteria | 2675903129 | 2676743281 | 314 |
| 89 | iso_pu_bacteria | 2818991452 | 2819635567 | 314 |
| 90 | iso_pu_bacteria | 2818991463 | 2819695539 | 314 |
| 91 | iso_pu_bacteria | 2904564687 | 2904566913 | 314 |
| 92 | iso_pu_bacteria | 2904571731 | 2904574143 | 314 |
| 93 | iso_pu_bacteria | 2928170801 | 2928176979 | 314 |
| 94 | iso_pu_bacteria | 2928536128 | 2928541254 | 314 |
| 95 | iso_pu_bacteria | 641736154 | 642417619 | 314 |
| 96 | iso_pu_bacteria | 8018845410 | 8018852953 | 314 |
| 97 | iso_pu_bacteria | 8020938398 | 8020941306 | 314 |
| 98 | iso_pu_bacteria | 8020953355 | 8020956643 | 314 |
| 99 | iso_pu_bacteria | 8021120328 | 8021124768 | 314 |
| 100 | 3300005539 | Ga0068853_100012666 | Ga0068853_1000126664 | 315 |
| 101 | 3300009011 | Ga0105251_10000710 | Ga0105251_1000071016 | 315 |
| 102 | 3300009988 | Ga0105035_100597 | Ga0105035_1005972 | 315 |
| 103 | 3300025735 | Ga0207713_1000836 | Ga0207713_100083614 | 315 |
| 104 | 3300026023 | Ga0207677_10023730 | Ga0207677_100237304 | 315 |
| 105 | 3300030521 | Ga0307511_10099662 | Ga0307511_100996623 | 315 |
| 106 | iso_pu_bacteria | 2772190666 | 2772437179 | 315 |
| 107 | iso_pu_bacteria | 2937967321 | 2937970774 | 315 |
| 108 | iso_pu_bacteria | 8004592986 | 8004597869 | 315 |
| 109 | iso_pu_bacteria | 8057568493 | 8057573400 | 315 |
| 110 | 3300031838 | Ga0307518_10000121 | Ga0307518_1000012120 | 316 |
| 111 | 3300053158 | Ga0500627_0098556 | Ga0500627_0098556_214_1173 | 316 |
| 112 | iso_pu_bacteria | 2501025501 | 2501070195 | 316 |
| 113 | iso_pu_bacteria | 2510917015 | 2511105191 | 316 |
| 114 | iso_pu_bacteria | 2643221571 | 2643874183 | 316 |
| 115 | iso_pu_bacteria | 2687453129 | 2687577974 | 316 |
| 116 | iso_pu_bacteria | 2881412998 | 2881413256 | 316 |
| 117 | 3300005347 | Ga0070668_100000663 | Ga0070668_10000066321 | 317 |
| 118 | 3300013102 | Ga0157371_10000727 | Ga0157371_1000072728 | 317 |
| 119 | 3300025972 | Ga0207668_10004348 | Ga0207668_100043483 | 317 |
| 120 | 3300003323 | rootH1_10154456 | rootH1_101544562 | 318 |
| 121 | 3300003758 | Ga0055532_1000167 | Ga0055532_100016749 | 318 |
| 122 | 3300003760 | Ga0055527_1001787 | Ga0055527_10017872 | 318 |
| 123 | 3300003760 | Ga0055527_1004109 | Ga0055527_10041092 | 318 |
| 124 | 3300003761 | Ga0055535_1000126 | Ga0055535_100012631 | 318 |
| 125 | 3300003762 | Ga0055542_1000169 | Ga0055542_100016931 | 318 |
| 126 | 3300003763 | Ga0055529_1000172 | Ga0055529_100017258 | 318 |
| 127 | 3300003792 | Ga0055540_1011561 | Ga0055540_10115612 | 318 |
| 128 | 3300005262 | Ga0065165_1000373 | Ga0065165_10003737 | 318 |
| 129 | 3300015262 | Ga0182007_10002628 | Ga0182007_1000262811 | 318 |
| 130 | 3300025225 | Ga0209566_100272 | Ga0209566_10027232 | 318 |
| 131 | 3300025228 | Ga0209672_100025 | Ga0209672_10002532 | 318 |
| 132 | 3300025228 | Ga0209672_106633 | Ga0209672_1066332 | 318 |
| 133 | 3300025229 | Ga0209147_100032 | Ga0209147_10003232 | 318 |
| 134 | 3300025242 | Ga0209258_100050 | Ga0209258_10005032 | 318 |
| 135 | 3300025254 | Ga0209148_1000060 | Ga0209148_100006032 | 318 |
| 136 | 3300025272 | Ga0209455_1000055 | Ga0209455_100005532 | 318 |
| 137 | 3300025302 | Ga0207426_1008056 | Ga0207426_10080562 | 318 |
| 138 | 3300025303 | Ga0209051_1001094 | Ga0209051_100109416 | 318 |
| 139 | 3300037466 | Ga0395898_0437221 | Ga0395898_0437221_160_1125 | 318 |
| 140 | 3300046691 | Ga0495670_0097101 | Ga0495670_0097101_274_1266 | 318 |
| 141 | 3300048922 | Ga0496119_0001146 | Ga0496119_0001146_13830_14795 | 318 |
| 142 | 3300048922 | Ga0496119_0002260 | Ga0496119_0002260_17873_18838 | 318 |
| 143 | 3300048923 | Ga0496120_0000510 | Ga0496120_0000510_12549_13514 | 318 |
| 144 | 3300048923 | Ga0496120_0001526 | Ga0496120_0001526_12554_13519 | 318 |
| 145 | 3300048927 | Ga0496124_0000008 | Ga0496124_0000008_291025_291990 | 318 |
| 146 | 3300049569 | Ga0501032_0034758 | Ga0501032_0034758_2162_3136 | 318 |
| 147 | 3300049571 | Ga0501034_0274001 | Ga0501034_0274001_431_1405 | 318 |
| 148 | 3300049572 | Ga0501036_0112159 | Ga0501036_0112159_233_1207 | 318 |
| 149 | 3300049581 | Ga0501047_0059622 | Ga0501047_0059622_449_1423 | 318 |
| 150 | 3300049824 | Ga0501045_0042032 | Ga0501045_0042032_232_1206 | 318 |
| 151 | 3300053156 | Ga0500622_0012257 | Ga0500622_0012257_317_1309 | 318 |
| 152 | iso_pu_bacteria | 2831864461 | 2831866401 | 318 |
| 153 | iso_pu_bacteria | 2862178590 | 2862182167 | 318 |
| 154 | iso_pu_bacteria | 2889042446 | 2889045463 | 318 |
| 155 | iso_pu_bacteria | 2904490793 | 2904492334 | 318 |
| 156 | iso_pu_bacteria | 2919160200 | 2919161558 | 318 |
| 157 | iso_pu_bacteria | 2931384279 | 2931388894 | 318 |
| 158 | iso_pu_bacteria | 2945991243 | 2945992537 | 318 |
| 159 | iso_pu_bacteria | 2946053406 | 2946055282 | 318 |
| 160 | 3300009036 | Ga0105244_10026832 | Ga0105244_100268321 | 319 |
| 161 | 3300025728 | Ga0207655_1089498 | Ga0207655_10894981 | 319 |
| 162 | 3300046499 | Ga0495594_0010548 | Ga0495594_0010548_3227_4192 | 319 |
| 163 | 3300046683 | Ga0495658_0030963 | Ga0495658_0030963_1593_2558 | 319 |
| 164 | 3300048928 | Ga0496125_0006800 | Ga0496125_0006800_7296_8264 | 319 |
| 165 | 3300048928 | Ga0496125_0015317 | Ga0496125_0015317_3379_4368 | 319 |
| 166 | 3300048928 | Ga0496125_0187311 | Ga0496125_0187311_42_1049 | 319 |
| 167 | 3300053107 | Ga0500560_005258 | Ga0500560_005258_435_1400 | 319 |
| 168 | iso_pu_bacteria | 2816332139 | 2816511373 | 319 |
| 169 | iso_pu_bacteria | 2864733723 | 2864734779 | 319 |
| 170 | iso_pu_bacteria | 2939679117 | 2939681844 | 319 |
| 171 | 2162886007 | SwRhRL2b_contig_1953019 | SwRhRL2b_1000.00005580 | 320 |
| 172 | 3300005289 | Ga0065704_10082432 | Ga0065704_100824324 | 320 |
| 173 | 3300009092 | Ga0105250_10000034 | Ga0105250_1000003486 | 320 |
| 174 | 3300013306 | Ga0163162_10029629 | Ga0163162_100296295 | 320 |
| 175 | 3300025711 | Ga0207696_1000107 | Ga0207696_100010771 | 320 |
| 176 | 3300046460 | Ga0495638_0010130 | Ga0495638_0010130_4099_5064 | 320 |
| 177 | 3300046474 | Ga0495605_0044290 | Ga0495605_0044290_69_1031 | 320 |
| 178 | 3300046501 | Ga0495607_0012896 | Ga0495607_0012896_1086_2048 | 320 |
| 179 | 3300046513 | Ga0495616_0043402 | Ga0495616_0043402_1218_2180 | 320 |
| 180 | 3300046518 | Ga0495631_0021777 | Ga0495631_0021777_1098_2060 | 320 |
| 181 | 3300046528 | Ga0495642_0000080 | Ga0495642_0000080_3027_3989 | 320 |
| 182 | 3300046538 | Ga0495609_0000218 | Ga0495609_0000218_53172_54134 | 320 |
| 183 | 3300048905 | Ga0496102_0010146 | Ga0496102_0010146_939_1910 | 320 |
| 184 | 3300048906 | Ga0496103_0051162 | Ga0496103_0051162_1344_2315 | 320 |
| 185 | 3300048920 | Ga0496117_0011325 | Ga0496117_0011325_4106_5068 | 320 |
| 186 | 3300048921 | Ga0496118_0000126 | Ga0496118_0000126_125638_126609 | 320 |
| 187 | 3300048921 | Ga0496118_0015932 | Ga0496118_0015932_2420_3382 | 320 |
| 188 | 3300048922 | Ga0496119_0055258 | Ga0496119_0055258_1117_2079 | 320 |
| 189 | 3300048923 | Ga0496120_0073742 | Ga0496120_0073742_65_1027 | 320 |
| 190 | 3300048924 | Ga0496121_0020025 | Ga0496121_0020025_2348_3334 | 320 |
| 191 | 3300048925 | Ga0496122_0041282 | Ga0496122_0041282_289_1251 | 320 |
| 192 | 3300048926 | Ga0496123_0035804 | Ga0496123_0035804_1978_2940 | 320 |
| 193 | 3300048928 | Ga0496125_0036976 | Ga0496125_0036976_973_1959 | 320 |
| 194 | 3300048929 | Ga0496126_0027541 | Ga0496126_0027541_1164_2126 | 320 |
| 195 | 3300049460 | Ga0495682_0036694 | Ga0495682_0036694_536_1498 | 320 |
| 196 | 3300053105 | Ga0500557_003609 | Ga0500557_003609_931_1893 | 320 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 3rd5-assembly1.cif.gz_A | crystal structure of a putative uncharacterized protein from mycobacterium paratuberculosis | 0.8687 | 15 | 315 |
| 3rd5-assembly1.cif.gz_A | crystal structure of a putative uncharacterized protein from mycobacterium paratuberculosis | 0.8532 | 15 | 315 |
| 4pcv-assembly1.cif.gz_B | the structure of bdca (yjgi) from e. coli | 0.8484 | 25 | 273 |
| 4pcv-assembly1.cif.gz_A | the structure of bdca (yjgi) from e. coli | 0.8353 | 27 | 273 |
| 4cqm-assembly4.cif.gz_H | crystal structure of heterotetrameric human ketoacyl reductase complexed with nad and nadp | 0.8339 | 27 | 274 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_A0A0P0WC51_15_133_3.40.50.720 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain | 0.9301 | 28 | 106 | 3.40.50.720 |
| af_A8WG01_1_250_3.40.50.720 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain | 0.9088 | 59 | 315 | 3.40.50.720 |
| af_Q9VE80_46_330_3.40.50.720 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain | 0.908 | 25 | 315 | 3.40.50.720 |
| af_Q9VE80_46_330_3.40.50.720 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain | 0.8988 | 25 | 315 | 3.40.50.720 |
| af_A0A0R0HY16_23_359_3.40.50.720 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain | 0.8965 | 24 | 312 | 3.40.50.720 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A4Y8STD2-F1-model_v4 | SDR family NAD(P)-dependent oxidoreductase | 0.9942 | 1 | 316 |
|
| AF-A0A839V4T4-F1-model_v4 | NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) | 0.9921 | 105 | 316 |
|
| AF-A0A2W2HCI3-F1-model_v4 | ABC transmembrane type-1 domain-containing protein | 0.9907 | 1 | 319 |
GO:0005524
GO:0005886 GO:0016491 GO:0140359 |
| AF-A0A6A5L958-F1-model_v4 | deleted | 0.9891 | 1 | 315 |
|
| AF-A0A7W2D2T7-F1-model_v4 | SDR family NAD(P)-dependent oxidoreductase | 0.9856 | 1 | 319 |
|
Predicted Structure (AlphaFold2)
Powered by PDBe Molstar