F300737

General Info

Members Datasets Scaffolds Average Seq Length
195 138 195 326

Family's Representative Sequence

Representative Sequence 3300050494|nmdc:mga06z11_13147_c1|nmdc:mga06z11_13147_c1_1160_2263
Length 367
Sequence MSFSSMIGIMSNQAATYPSNRCESKPLSLVACNDPEQRLVDKSPVKVAVTGAAGRIGYSLLFRIASGSMFGPDQPVELRLIEIPQALPVLSGIVMELEDCAFPLLKKVVSTADLNEGFAGVNWALLVGSVPRKQGMKRKDLLEINGKIFTGQGHAIQKNAASDVRVLVVGNPCNTNCLIAMNNAKDIPADRWFAMTRLDENRAKSQLAIKSQTHVTAVSNVAIWGNHSATQYPDFYNARIDGKPTTEVIKDQAWFEEMFIPTVQQRGGAILKVRGASSAASAANAVVDTVHSLLTPTKPNDWYSVAVCSEGSYGIEKGLITSFPIRTVRDKWEIVQDIPLNDFSRHMIAASIQELMDEKSLASYLWG

Samples

Sample ID Description Type Environment
1 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
17 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
20 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
21 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
22 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
23 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
24 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
29 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
30 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
31 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
32 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
33 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
34 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
35 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
36 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
37 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
38 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
42 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
43 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
44 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
45 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
46 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
47 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
48 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
49 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
50 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
51 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
73 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
75 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
76 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
77 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
78 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
79 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
80 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
81 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
82 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
83 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
84 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
85 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
86 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
87 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
88 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
89 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
90 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
91 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
92 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
93 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
94 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
95 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
96 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
97 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
98 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
99 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
100 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
101 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
102 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
103 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
104 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
105 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
106 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
107 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
108 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
109 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
110 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
111 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
112 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
113 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
114 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
115 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
116 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
117 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
118 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
123 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
125 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
126 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
127 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
128 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
129 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
130 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
131 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
132 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
133 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
134 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
135 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
136 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
137 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
138 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.49
Metatranscriptomes 0.51
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.74
Nodule 0
Rhizoplane 0.51
Rhizosphere 85.13
Stem 0
Stem Tuber 0
Unclassified 4.62

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10039665 3300003322 Bacteria 5027
2 JGI25407J50210_10031283 3300003373 Unclassified 1378
3 Ga0065715_10241387 3300005293 Bacteria 1198
4 Ga0070658_10013186 3300005327 Bacteria 6630
5 Ga0070689_100026386 3300005340 Bacteria 4373
6 Ga0070668_100138909 3300005347 Bacteria 1957
7 Ga0070669_100233746 3300005353 Bacteria 1458
8 Ga0070675_100066110 3300005354 Bacteria 2990
9 Ga0070709_10153702 3300005434 Unclassified 1593
10 Ga0070714_100163374 3300005435 Unclassified 2016
11 Ga0070714_100163484 3300005435 Bacteria 2015
12 Ga0070714_100373140 3300005435 Bacteria 1343
13 Ga0070713_100016306 3300005436 Bacteria 5585
14 Ga0070713_100045691 3300005436 Bacteria 3590
15 Ga0070710_10035277 3300005437 Bacteria 2726
16 Ga0070711_100006192 3300005439 Bacteria 7197
17 Ga0070711_100046544 3300005439 Bacteria 2956
18 Ga0070708_100059789 3300005445 Bacteria 3399
19 Ga0070708_100219965 3300005445 Bacteria 1781
20 Ga0070681_10075471 3300005458 Bacteria 3331
21 Ga0070681_10132101 3300005458 Unclassified 2429
22 Ga0070681_10196592 3300005458 Bacteria 1935
23 Ga0070706_100000448 3300005467 Bacteria 49282
24 Ga0070706_100038191 3300005467 Bacteria 4433
25 Ga0070706_100053863 3300005467 Bacteria 3713
26 Ga0070707_100000004 3300005468 Bacteria 265003
27 Ga0070707_100052372 3300005468 Bacteria 3913
28 Ga0070698_100165944 3300005471 Bacteria 2151
29 Ga0070699_100000220 3300005518 Bacteria 56957
30 Ga0070679_100109583 3300005530 Bacteria 2747
31 Ga0070697_100000007 3300005536 Bacteria 197603
32 Ga0070697_100067193 3300005536 Bacteria 2932
33 Ga0070697_100310576 3300005536 Bacteria 1356
34 Ga0068853_100000001 3300005539 Bacteria 715840
35 Ga0070672_100019674 3300005543 Bacteria 4906
36 Ga0070704_100038314 3300005549 Bacteria 3283
37 Ga0068858_100012265 3300005842 Bacteria 8081
38 Ga0068860_100000202 3300005843 Bacteria 94520
39 Ga0081455_10236614 3300005937 Bacteria 1344
40 Ga0081538_10010888 3300005981 Bacteria 7414
41 Ga0081540_1059361 3300005983 Bacteria 1837
42 Ga0070717_10107794 3300006028 Bacteria 2373
43 Ga0070717_10121957 3300006028 Bacteria 2234
44 Ga0070717_10158139 3300006028 Bacteria 1964
45 Ga0075363_100113111 3300006048 Bacteria 1510
46 Ga0075364_10027380 3300006051 Bacteria 3641
47 Ga0070712_100030076 3300006175 Bacteria 3646
48 Ga0075367_10022381 3300006178 Bacteria 3545
49 Ga0075369_10010385 3300006186 Bacteria 3641
50 Ga0075366_10022851 3300006195 Bacteria 3641
51 Ga0075370_10020500 3300006353 Bacteria 3615
52 Ga0075428_100414876 3300006844 Bacteria 1443
53 Ga0075428_100546907 3300006844 Bacteria 1238
54 Ga0111539_10163017 3300009094 Bacteria 2608
55 Ga0111539_10172528 3300009094 Bacteria 2526
56 Ga0114129_10204181 3300009147 Bacteria 2675
57 Ga0105243_10144208 3300009148 Bacteria 2036
58 Ga0105242_10558563 3300009176 Bacteria 1099
59 Ga0105238_10004479 3300009551 Bacteria 13848
60 Ga0105238_10042121 3300009551 Bacteria 4624
61 Ga0105238_10564205 3300009551 Bacteria 1144
62 Ga0157374_10000120 3300013296 Bacteria 70823
63 Ga0157378_10321073 3300013297 Bacteria 1504
64 Ga0157379_10315225 3300014968 Bacteria 1427
65 Ga0157376_10000410 3300014969 Bacteria 27889
66 Ga0213872_10039599 3300021361 Bacteria 2150
67 Ga0213876_10002508 3300021384 Bacteria 10769
68 Ga0213871_10004126 3300021441 Bacteria 2877
69 Ga0207692_10135975 3300025898 Unclassified 1393
70 Ga0207705_10033788 3300025909 Bacteria 3655
71 Ga0207684_10000034 3300025910 Bacteria 291009
72 Ga0207684_10058411 3300025910 Bacteria 3273
73 Ga0207707_10035042 3300025912 Bacteria 4389
74 Ga0207707_10069478 3300025912 Bacteria 3070
75 Ga0207707_10174943 3300025912 Bacteria 1875
76 Ga0207693_10112763 3300025915 Bacteria 2133
77 Ga0207693_10170760 3300025915 Bacteria 1712
78 Ga0207663_10072205 3300025916 Bacteria 2230
79 Ga0207652_10025565 3300025921 Bacteria 4910
80 Ga0207652_10457432 3300025921 Bacteria 1150
81 Ga0207646_10000018 3300025922 Bacteria 291009
82 Ga0207646_10076731 3300025922 Bacteria 2987
83 Ga0207646_10080235 3300025922 Bacteria 2917
84 Ga0207681_10237189 3300025923 Bacteria 1418
85 Ga0207694_10003718 3300025924 Bacteria 12086
86 Ga0207694_10026939 3300025924 Bacteria 4377
87 Ga0207659_10082293 3300025926 Bacteria 2383
88 Ga0207700_10017826 3300025928 Unclassified 4752
89 Ga0207664_10059128 3300025929 Unclassified 3052
90 Ga0207664_10410986 3300025929 Bacteria 1205
91 Ga0207706_10240233 3300025933 Bacteria 1583
92 Ga0207670_10051542 3300025936 Bacteria 2764
93 Ga0207691_10044630 3300025940 Bacteria 4079
94 Ga0207667_10072559 3300025949 Bacteria 3578
95 Ga0207667_10228554 3300025949 Bacteria 1905
96 Ga0207703_10049456 3300026035 Bacteria 3399
97 Ga0207639_10000001 3300026041 Bacteria 1431562
98 Ga0207639_10253918 3300026041 Unclassified 1534
99 Ga0207702_10114896 3300026078 Bacteria 2400
100 Ga0207683_10256643 3300026121 Bacteria 1596
101 Ga0207683_10277825 3300026121 Bacteria 1530
102 Ga0207428_10043154 3300027907 Bacteria 3644
103 Ga0268264_10000241 3300028381 Bacteria 103608
104 Ga0265337_1000031 3300028556 Bacteria 64194
105 Ga0265337_1011215 3300028556 Bacteria 3098
106 Ga0265319_1002113 3300028563 Bacteria 11137
107 Ga0265319_1008907 3300028563 Bacteria 4341
108 Ga0265319_1010881 3300028563 Bacteria 3768
109 Ga0265319_1014648 3300028563 Bacteria 3068
110 Ga0265319_1049204 3300028563 Bacteria 1396
111 Ga0265334_10000091 3300028573 Bacteria 64750
112 Ga0265318_10033152 3300028577 Bacteria 1995
113 Ga0265323_10025642 3300028653 Bacteria 2228
114 Ga0265336_10003019 3300028666 Bacteria 6708
115 Ga0265336_10016840 3300028666 Bacteria 2386
116 Ga0307515_10254870 3300028794 Bacteria 1501
117 Ga0265338_10000233 3300028800 Bacteria 103593
118 Ga0265338_10059202 3300028800 Bacteria 3375
119 Ga0265324_10003136 3300029957 Bacteria 8024
120 Ga0265324_10027291 3300029957 Bacteria 2017
121 Ga0265332_10001294 3300031238 Bacteria 14299
122 Ga0265320_10000148 3300031240 Bacteria 59382
123 Ga0265320_10000222 3300031240 Bacteria 46248
124 Ga0265320_10000913 3300031240 Bacteria 22160
125 Ga0265320_10014130 3300031240 Bacteria 4563
126 Ga0265320_10020013 3300031240 Bacteria 3641
127 Ga0265325_10067406 3300031241 Bacteria 1803
128 Ga0265340_10012978 3300031247 Bacteria 4390
129 Ga0265340_10017460 3300031247 Bacteria 3712
130 Ga0265331_10005607 3300031250 Bacteria 7551
131 Ga0265327_10003869 3300031251 Bacteria 13795
132 Ga0265316_10010387 3300031344 Bacteria 8488
133 Ga0307408_100000061 3300031548 Bacteria 128129
134 Ga0265313_10000400 3300031595 Bacteria 46663
135 Ga0265313_10011948 3300031595 Bacteria 5355
136 Ga0265342_10007936 3300031712 Bacteria 7699
137 Ga0316576_10052055 3300031727 Bacteria 2981
138 Ga0316593_10080907 3300032168 Unclassified 1134
139 Ga0373954_0009136 3300035118 Bacteria 4361
140 Ga0316574_0028901 3300035398 Bacteria 3346
141 Ga0316574_0075370 3300035398 Bacteria 2136
142 Ga0316574_0193981 3300035398 Bacteria 1306
143 Ga0373933_0084581 3300035724 Bacteria 1949
144 Ga0373937_0139765 3300036401 Bacteria 2265
145 Ga0373925_0386163 3300037068 Bacteria 1141
146 Ga0436364_0551540 3300037853 Bacteria 1241
147 Ga0436364_0782972 3300037853 Bacteria 1244
148 Ga0436364_1363582 3300037853 Bacteria 10004
149 Ga0436365_0590138 3300039437 Bacteria 1838
150 Ga0436365_1092640 3300039437 Bacteria 29488
151 Ga0436360_1002909 3300039438 Bacteria 7974
152 Ga0436361_0138508 3300039447 Bacteria 1646
153 Ga0436361_0418729 3300039447 Bacteria 4365
154 Ga0436361_0594951 3300039447 Bacteria 1405
155 Ga0436361_0857727 3300039447 Bacteria 1631
156 Ga0436362_0006610 3300039453 Bacteria 4471
157 Ga0451577_0004831 3300042876 Bacteria 14075
158 Ga0466959_0121536 3300045049 Bacteria 1856
159 Ga0451576_0169290 3300045051 Bacteria 2280
160 Ga0466958_0020192 3300045836 Bacteria 3884
161 Ga0466958_0242889 3300045836 Bacteria 1151
162 Ga0495618_0005981 3300046514 Bacteria 7390
163 Ga0495643_0000191 3300046522 Bacteria 97250
164 Ga0495652_0062344 3300046529 Bacteria 3144
165 Ga0495587_0158909 3300046536 Bacteria 1287
166 Ga0495634_0005011 3300046642 Bacteria 10231
167 Ga0495613_0004217 3300046689 Bacteria 10764
168 Ga0495680_0012285 3300047322 Bacteria 7544
169 Ga0496110_0058265 3300048913 Bacteria 3402
170 Ga0496124_0252746 3300048927 Bacteria 1302
171 Ga0501031_0025743 3300049568 Bacteria 3838
172 Ga0501037_0036331 3300049573 Bacteria 3631
173 Ga0501043_0120889 3300049579 Bacteria 2054
174 Ga0501047_0064291 3300049581 Bacteria 3539
175 Ga0501080_0156103 3300049742 Bacteria 2108
176 Ga0501035_0038528 3300049822 Bacteria 4327
177 Ga0501044_0036878 3300049823 Bacteria 5113
178 Ga0501044_0147297 3300049823 Bacteria 2339
179 nmdc:mga03683_1611_c1 3300050489 Bacteria 6761
180 nmdc:mga03n38_24199_c1 3300050490 Bacteria 2481
181 nmdc:mga03n38_6754_c1 3300050490 Bacteria 4013
182 nmdc:mga0k408_10921_c1 3300050493 Bacteria 4927
183 nmdc:mga0k408_4534_c1 3300050493 Bacteria 7376
184 nmdc:mga06z11_13147_c1 3300050494 Bacteria 3625
185 nmdc:mga07m45_20140_c1 3300050496 Bacteria 3622
186 nmdc:mga05p37_153098_c1 3300050507 Bacteria 2819
187 nmdc:mga08y16_134814_c1 3300050511 Bacteria 2566
188 nmdc:mga08y16_70353_c1 3300050511 Bacteria 3648
189 nmdc:mga0sz30_9834_c1 3300050516 Bacteria 3648
190 Ga0500555_001269 3300053103 Bacteria 8083
191 Ga0500556_0035793 3300053104 Bacteria 1717
192 Ga0500658_0008761 3300053134 Bacteria 3732
193 Ga0500568_0023906 3300053139 Bacteria 2593
194 Ga0500588_0066180 3300053146 Bacteria 1172
195 Ga0501082_0253029 3300060353 Bacteria 1533

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005458 Ga0070681_10075471 Ga0070681_100754713 293
2 3300005458 Ga0070681_10132101 Ga0070681_101321012 293
3 3300005530 Ga0070679_100109583 Ga0070679_1001095832 293
4 3300025912 Ga0207707_10069478 Ga0207707_100694783 293
5 3300025921 Ga0207652_10457432 Ga0207652_104574321 293
6 3300035398 Ga0316574_0075370 Ga0316574_0075370_1086_2078 293
7 3300005327 Ga0070658_10013186 Ga0070658_100131866 294
8 3300005435 Ga0070714_100163484 Ga0070714_1001634843 294
9 3300025909 Ga0207705_10033788 Ga0207705_100337882 294
10 3300025912 Ga0207707_10035042 Ga0207707_100350423 294
11 3300025921 Ga0207652_10025565 Ga0207652_100255654 294
12 3300025929 Ga0207664_10410986 Ga0207664_104109861 294
13 3300046529 Ga0495652_0062344 Ga0495652_0062344_19_945 301
14 3300028794 Ga0307515_10254870 Ga0307515_102548702 304
15 3300032168 Ga0316593_10080907 Ga0316593_100809071 306
16 3300005354 Ga0070675_100066110 Ga0070675_1000661102 309
17 3300005543 Ga0070672_100019674 Ga0070672_1000196743 309
18 3300006844 Ga0075428_100546907 Ga0075428_1005469072 309
19 3300009094 Ga0111539_10172528 Ga0111539_101725282 309
20 3300009148 Ga0105243_10144208 Ga0105243_101442083 309
21 3300025926 Ga0207659_10082293 Ga0207659_100822933 309
22 3300025940 Ga0207691_10044630 Ga0207691_100446305 309
23 3300026121 Ga0207683_10256643 Ga0207683_102566432 309
24 3300026121 Ga0207683_10277825 Ga0207683_102778251 309
25 3300050511 nmdc:mga08y16_134814_c1 nmdc:mga08y16_134814_c1_648_1637 309
26 3300005435 Ga0070714_100163374 Ga0070714_1001633743 310
27 3300005436 Ga0070713_100016306 Ga0070713_1000163065 310
28 3300021384 Ga0213876_10002508 Ga0213876_100025089 310
29 3300021441 Ga0213871_10004126 Ga0213871_100041261 310
30 3300025928 Ga0207700_10017826 Ga0207700_100178264 310
31 3300037853 Ga0436364_0782972 Ga0436364_0782972_100_1086 310
32 3300039437 Ga0436365_1092640 Ga0436365_1092640_6170_7156 310
33 3300039438 Ga0436360_1002909 Ga0436360_1002909_1705_2691 310
34 3300039447 Ga0436361_0418729 Ga0436361_0418729_1579_2568 310
35 3300048927 Ga0496124_0252746 Ga0496124_0252746_166_1170 310
36 3300005293 Ga0065715_10241387 Ga0065715_102413872 311
37 3300009551 Ga0105238_10564205 Ga0105238_105642051 311
38 3300013296 Ga0157374_10000120 Ga0157374_1000012064 311
39 3300014969 Ga0157376_10000410 Ga0157376_100004103 311
40 3300048913 Ga0496110_0058265 Ga0496110_0058265_414_1403 311
41 3300005435 Ga0070714_100373140 Ga0070714_1003731402 313
42 3300025915 Ga0207693_10170760 Ga0207693_101707602 313
43 3300031548 Ga0307408_100000061 Ga0307408_10000006136 313
44 3300045049 Ga0466959_0121536 Ga0466959_0121536_320_1294 313
45 3300045836 Ga0466958_0020192 Ga0466958_0020192_181_1155 313
46 3300005436 Ga0070713_100045691 Ga0070713_1000456913 314
47 3300028556 Ga0265337_1000031 Ga0265337_100003136 314
48 3300028563 Ga0265319_1002113 Ga0265319_10021132 314
49 3300028573 Ga0265334_10000091 Ga0265334_100000918 314
50 3300028653 Ga0265323_10025642 Ga0265323_100256421 314
51 3300028666 Ga0265336_10003019 Ga0265336_100030192 314
52 3300028800 Ga0265338_10000233 Ga0265338_1000023363 314
53 3300029957 Ga0265324_10003136 Ga0265324_100031367 314
54 3300031238 Ga0265332_10001294 Ga0265332_100012943 314
55 3300031240 Ga0265320_10014130 Ga0265320_100141303 314
56 3300031241 Ga0265325_10067406 Ga0265325_100674062 314
57 3300031247 Ga0265340_10017460 Ga0265340_100174602 314
58 3300031344 Ga0265316_10010387 Ga0265316_100103872 314
59 3300031595 Ga0265313_10011948 Ga0265313_100119482 314
60 3300031712 Ga0265342_10007936 Ga0265342_100079362 314
61 3300037853 Ga0436364_1363582 Ga0436364_1363582_518_1486 314
62 3300039437 Ga0436365_0590138 Ga0436365_0590138_19_987 314
63 3300009147 Ga0114129_10204181 Ga0114129_102041813 316
64 3300050490 nmdc:mga03n38_24199_c1 nmdc:mga03n38_24199_c1_469_1440 316
65 3300050490 nmdc:mga03n38_6754_c1 nmdc:mga03n38_6754_c1_2649_3620 316
66 3300050493 nmdc:mga0k408_4534_c1 nmdc:mga0k408_4534_c1_1257_2228 316
67 3300050507 nmdc:mga05p37_153098_c1 nmdc:mga05p37_153098_c1_1220_2191 316
68 3300050511 nmdc:mga08y16_70353_c1 nmdc:mga08y16_70353_c1_916_1887 316
69 3300050516 nmdc:mga0sz30_9834_c1 nmdc:mga0sz30_9834_c1_1219_2190 316
70 3300053146 Ga0500588_0066180 Ga0500588_0066180_39_1010 316
71 3300039447 Ga0436361_0138508 Ga0436361_0138508_639_1622 317
72 3300039447 Ga0436361_0594951 Ga0436361_0594951_247_1230 317
73 3300039447 Ga0436361_0857727 Ga0436361_0857727_553_1536 317
74 3300006028 Ga0070717_10107794 Ga0070717_101077942 318
75 3300039453 Ga0436362_0006610 Ga0436362_0006610_2388_3371 318
76 3300005434 Ga0070709_10153702 Ga0070709_101537022 319
77 3300005437 Ga0070710_10035277 Ga0070710_100352773 319
78 3300005439 Ga0070711_100006192 Ga0070711_1000061924 319
79 3300005439 Ga0070711_100046544 Ga0070711_1000465442 319
80 3300006028 Ga0070717_10121957 Ga0070717_101219572 319
81 3300006028 Ga0070717_10158139 Ga0070717_101581393 319
82 3300006175 Ga0070712_100030076 Ga0070712_1000300763 319
83 3300021361 Ga0213872_10039599 Ga0213872_100395992 319
84 3300025898 Ga0207692_10135975 Ga0207692_101359751 319
85 3300025915 Ga0207693_10112763 Ga0207693_101127632 319
86 3300025916 Ga0207663_10072205 Ga0207663_100722052 319
87 3300025929 Ga0207664_10059128 Ga0207664_100591282 319
88 3300026041 Ga0207639_10253918 Ga0207639_102539182 319
89 3300028563 Ga0265319_1008907 Ga0265319_10089072 319
90 3300031240 Ga0265320_10000222 Ga0265320_1000022228 319
91 3300031240 Ga0265320_10020013 Ga0265320_100200132 319
92 3300005347 Ga0070668_100138909 Ga0070668_1001389092 320
93 3300005353 Ga0070669_100233746 Ga0070669_1002337461 320
94 3300005842 Ga0068858_100012265 Ga0068858_1000122653 320
95 3300005843 Ga0068860_100000202 Ga0068860_1000002026 320
96 3300005937 Ga0081455_10236614 Ga0081455_102366142 320
97 3300006048 Ga0075363_100113111 Ga0075363_1001131112 320
98 3300006051 Ga0075364_10027380 Ga0075364_100273803 320
99 3300006178 Ga0075367_10022381 Ga0075367_100223813 320
100 3300006186 Ga0075369_10010385 Ga0075369_100103853 320
101 3300006195 Ga0075366_10022851 Ga0075366_100228513 320
102 3300006353 Ga0075370_10020500 Ga0075370_100205003 320
103 3300006844 Ga0075428_100414876 Ga0075428_1004148762 320
104 3300009094 Ga0111539_10163017 Ga0111539_101630172 320
105 3300014968 Ga0157379_10315225 Ga0157379_103152252 320
106 3300025923 Ga0207681_10237189 Ga0207681_102371892 320
107 3300025933 Ga0207706_10240233 Ga0207706_102402332 320
108 3300026035 Ga0207703_10049456 Ga0207703_100494561 320
109 3300027907 Ga0207428_10043154 Ga0207428_100431542 320
110 3300028381 Ga0268264_10000241 Ga0268264_1000024119 320
111 3300028666 Ga0265336_10016840 Ga0265336_100168402 320
112 3300028800 Ga0265338_10059202 Ga0265338_100592022 320
113 3300031727 Ga0316576_10052055 Ga0316576_100520554 320
114 3300035398 Ga0316574_0028901 Ga0316574_0028901_432_1418 320
115 3300037068 Ga0373925_0386163 Ga0373925_0386163_25_1011 320
116 3300037853 Ga0436364_0551540 Ga0436364_0551540_144_1127 320
117 3300042876 Ga0451577_0004831 Ga0451577_0004831_7980_8963 320
118 3300045836 Ga0466958_0242889 Ga0466958_0242889_17_1006 320
119 3300046522 Ga0495643_0000191 Ga0495643_0000191_72686_73672 320
120 3300049742 Ga0501080_0156103 Ga0501080_0156103_660_1646 320
121 3300050489 nmdc:mga03683_1611_c1 nmdc:mga03683_1611_c1_2676_3779 320
122 3300050493 nmdc:mga0k408_10921_c1 nmdc:mga0k408_10921_c1_2369_3472 320
123 3300050494 nmdc:mga06z11_13147_c1 nmdc:mga06z11_13147_c1_1160_2263 320
124 3300050496 nmdc:mga07m45_20140_c1 nmdc:mga07m45_20140_c1_1499_2602 320
125 3300053103 Ga0500555_001269 Ga0500555_001269_5595_6683 320
126 3300053104 Ga0500556_0035793 Ga0500556_0035793_561_1649 320
127 3300053134 Ga0500658_0008761 Ga0500658_0008761_943_2031 320
128 3300053139 Ga0500568_0023906 Ga0500568_0023906_1314_2402 320
129 3300003322 rootL2_10039665 rootL2_100396653 321
130 3300003373 JGI25407J50210_10031283 JGI25407J50210_100312831 321
131 3300005340 Ga0070689_100026386 Ga0070689_1000263864 321
132 3300005445 Ga0070708_100059789 Ga0070708_1000597892 321
133 3300005445 Ga0070708_100219965 Ga0070708_1002199652 321
134 3300005458 Ga0070681_10196592 Ga0070681_101965922 321
135 3300005467 Ga0070706_100000448 Ga0070706_10000044812 321
136 3300005467 Ga0070706_100038191 Ga0070706_1000381914 321
137 3300005467 Ga0070706_100053863 Ga0070706_1000538634 321
138 3300005468 Ga0070707_100000004 Ga0070707_100000004135 321
139 3300005468 Ga0070707_100052372 Ga0070707_1000523725 321
140 3300005471 Ga0070698_100165944 Ga0070698_1001659442 321
141 3300005518 Ga0070699_100000220 Ga0070699_10000022020 321
142 3300005536 Ga0070697_100000007 Ga0070697_100000007143 321
143 3300005536 Ga0070697_100067193 Ga0070697_1000671932 321
144 3300005536 Ga0070697_100310576 Ga0070697_1003105762 321
145 3300005539 Ga0068853_100000001 Ga0068853_100000001274 321
146 3300005549 Ga0070704_100038314 Ga0070704_1000383143 321
147 3300005981 Ga0081538_10010888 Ga0081538_100108886 321
148 3300005983 Ga0081540_1059361 Ga0081540_10593612 321
149 3300009176 Ga0105242_10558563 Ga0105242_105585631 321
150 3300009551 Ga0105238_10004479 Ga0105238_100044792 321
151 3300009551 Ga0105238_10042121 Ga0105238_100421213 321
152 3300013297 Ga0157378_10321073 Ga0157378_103210731 321
153 3300025910 Ga0207684_10000034 Ga0207684_10000034166 321
154 3300025910 Ga0207684_10058411 Ga0207684_100584113 321
155 3300025912 Ga0207707_10174943 Ga0207707_101749432 321
156 3300025922 Ga0207646_10000018 Ga0207646_10000018166 321
157 3300025922 Ga0207646_10076731 Ga0207646_100767311 321
158 3300025922 Ga0207646_10080235 Ga0207646_100802354 321
159 3300025924 Ga0207694_10003718 Ga0207694_100037185 321
160 3300025924 Ga0207694_10026939 Ga0207694_100269393 321
161 3300025936 Ga0207670_10051542 Ga0207670_100515422 321
162 3300025949 Ga0207667_10072559 Ga0207667_100725594 321
163 3300025949 Ga0207667_10228554 Ga0207667_102285542 321
164 3300026041 Ga0207639_10000001 Ga0207639_10000001620 321
165 3300026078 Ga0207702_10114896 Ga0207702_101148961 321
166 3300028556 Ga0265337_1011215 Ga0265337_10112151 321
167 3300028563 Ga0265319_1010881 Ga0265319_10108812 321
168 3300028563 Ga0265319_1014648 Ga0265319_10146482 321
169 3300028563 Ga0265319_1049204 Ga0265319_10492041 321
170 3300028577 Ga0265318_10033152 Ga0265318_100331522 321
171 3300029957 Ga0265324_10027291 Ga0265324_100272912 321
172 3300031240 Ga0265320_10000148 Ga0265320_100001484 321
173 3300031240 Ga0265320_10000913 Ga0265320_1000091314 321
174 3300031247 Ga0265340_10012978 Ga0265340_100129784 321
175 3300031250 Ga0265331_10005607 Ga0265331_100056076 321
176 3300031251 Ga0265327_10003869 Ga0265327_1000386912 321
177 3300031595 Ga0265313_10000400 Ga0265313_1000040034 321
178 3300035118 Ga0373954_0009136 Ga0373954_0009136_3323_4318 321
179 3300035398 Ga0316574_0193981 Ga0316574_0193981_230_1219 321
180 3300035724 Ga0373933_0084581 Ga0373933_0084581_705_1700 321
181 3300036401 Ga0373937_0139765 Ga0373937_0139765_1137_2132 321
182 3300045051 Ga0451576_0169290 Ga0451576_0169290_948_1934 321
183 3300046514 Ga0495618_0005981 Ga0495618_0005981_6264_7259 321
184 3300046536 Ga0495587_0158909 Ga0495587_0158909_74_1069 321
185 3300046642 Ga0495634_0005011 Ga0495634_0005011_3546_4541 321
186 3300046689 Ga0495613_0004217 Ga0495613_0004217_3964_4959 321
187 3300047322 Ga0495680_0012285 Ga0495680_0012285_2841_3836 321
188 3300049568 Ga0501031_0025743 Ga0501031_0025743_1507_2502 321
189 3300049573 Ga0501037_0036331 Ga0501037_0036331_901_1896 321
190 3300049579 Ga0501043_0120889 Ga0501043_0120889_74_1069 321
191 3300049581 Ga0501047_0064291 Ga0501047_0064291_420_1415 321
192 3300049822 Ga0501035_0038528 Ga0501035_0038528_2751_3746 321
193 3300049823 Ga0501044_0036878 Ga0501044_0036878_3464_4459 321
194 3300049823 Ga0501044_0147297 Ga0501044_0147297_922_1911 321
195 3300060353 Ga0501082_0253029 Ga0501082_0253029_477_1466 321

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00056

Ldh_1_N

lactate/malate dehydrogenase, NAD binding domain

45

193

0.95

PF02866

Ldh_1_C

lactate/malate dehydrogenase, alpha/beta C-terminal domain

196

364

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
6pbl-assembly1.cif.gz_B crystal structure of malate dehydrogenase from legionella pneumophila philadelphia 1 0.9761 3 318
7rrl-assembly1.cif.gz_A alternate crystal form of human malate dehydrogenase i 0.9706 1 314
7mdh-assembly2.cif.gz_D structural basis for light acitvation of a chloroplast enzyme. the structure of sorghum nadp-malate dehydrogenase in its oxidized form 0.9694 2 318
7mdh-assembly1.cif.gz_B structural basis for light acitvation of a chloroplast enzyme. the structure of sorghum nadp-malate dehydrogenase in its oxidized form 0.9688 2 318
5nue-assembly1.cif.gz_A cytosolic malate dehydrogenase 1 (peroxide-treated) 0.9687 1 318
ID Description Score Start End Superfamily
af_Q4D123_7_158_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9927 5 151 3.40.50.720
7mdhC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9862 2 151 3.40.50.720
4uuoA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9855 3 152 3.40.50.720
af_A0A1D6HWW8_53_199_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9687 11 152 3.40.50.720
4uuoA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9662 3 152 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A536LAS9-F1-model_v4 Malate dehydrogenase (EC 1.1.1.37) 1.01 2 71 GO:0006108
GO:0030060
AF-A0A349WET2-F1-model_v4 Malate dehydrogenase 1.008 2 87 GO:0006108
GO:0016615
AF-A0A2V5TW88-F1-model_v4 Malate dehydrogenase 1.006 1 76 GO:0006108
GO:0016615
AF-A0A6M1ZFR5-F1-model_v4 Malate dehydrogenase (EC 1.1.1.37) 1.005 3 84 GO:0006108
GO:0030060
AF-A0A349UWC8-F1-model_v4 Malate dehydrogenase (EC 1.1.1.37) 1.004 1 71 GO:0006108
GO:0030060

Feature Viewer

pLDDT pTM Quality
94.32 0.92 High
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Predicted Structure (AlphaFold2)

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