F300089

General Info

Members Datasets Scaffolds Average Seq Length
195 117 390 291

Family's Representative Sequence

Representative Sequence 3300013105|Ga0157369_10393720|Ga0157369_103937202
Length 319
Sequence MPELPEVETVRIGLSELLPGRIFSAVTHDTDKSFPNAPADVNAFLIGSSVTAVRRRAKVLLIELSSNYSLVIHLKMTGQLVFVGKANEGNEERRVKNVEKRPSSSFGVLHSNPDEVRFGAGHPNDSLVNKLPDKSTRVEFTFTDGGKLFFNDQRKFGWVKLLPTTEVPNIDFMKKVGPEPLAAEFTSSEFAGRFERRKNTTIKAAILDQTVVAGVGNIYADESLWGAKIHPSTLVKDISKAQFSRLFTELQYVLNLAIQKGGSSNHTYVNAEGKKGSYMDFARVFRREGLPCPRCGARLVKLRVAGRGTHICPKEQKLA

Samples

Sample ID Description Type Environment
1 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
5 3300001991 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2 Metagenome Rhizosphere
6 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
7 3300002155 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7 Metagenome Rhizosphere
8 3300002244 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1 Metagenome Rhizosphere
9 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
10 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
11 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
12 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
13 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
14 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
15 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
16 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
17 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
20 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
21 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
22 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
29 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
30 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
31 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
32 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
33 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
34 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
35 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
36 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
38 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
39 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
40 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
41 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
44 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
45 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
46 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
47 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
48 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
49 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
50 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
51 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
52 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
55 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
56 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
57 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
77 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
78 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
79 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
80 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
81 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
82 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
83 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
84 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
85 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
86 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
87 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
88 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
89 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
90 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
91 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
92 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
93 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
94 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
96 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
97 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
98 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
99 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
100 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
101 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
102 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
103 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
104 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
105 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
106 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
107 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
108 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
109 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
110 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
111 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
112 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
113 3300053143 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 endosphere Metagenome Endosphere
114 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
115 3300053722 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 endosphere Metagenome Endosphere
116 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere
117 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 24.1
Nodule 0
Rhizoplane 0.51
Rhizosphere 73.85
Stem 0
Stem Tuber 0
Unclassified 8.72

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157369_10393720 3300013105 Unclassified 1437
2 JGI24740J21852_10000966 3300001979 Bacteria 12795
3 JGI24740J21852_10022365 3300001979 Bacteria 2177
4 JGI24739J22299_10003380 3300001989 Bacteria 6090
5 JGI24737J22298_10000093 3300001990 Bacteria 26197
6 JGI24743J22301_10005228 3300001991 Unclassified 2157
7 JGI24735J21928_10000022 3300002067 Bacteria 97715
8 JGI24033J26618_1013520 3300002155 Bacteria 992
9 JGI24742J22300_10000020 3300002244 Bacteria 26144
10 rootL2_10108084 3300003322 Bacteria 8166
11 rootH1_10079398 3300003323 Bacteria 2551
12 rootH1_10122575 3300003323 Bacteria 2708
13 Ga0065715_10004896 3300005293 Bacteria 3819
14 Ga0070658_10000009 3300005327 Bacteria 319868
15 Ga0070658_10000097 3300005327 Bacteria 77127
16 Ga0070658_10000943 3300005327 Bacteria 24882
17 Ga0070658_10279678 3300005327 Unclassified 1420
18 Ga0070683_100000239 3300005329 Bacteria 37590
19 Ga0070683_100051235 3300005329 Bacteria 3822
20 Ga0070660_100066110 3300005339 Unclassified 2814
21 Ga0070661_100009831 3300005344 Bacteria 6635
22 Ga0070661_100037697 3300005344 Bacteria 3517
23 Ga0070671_100003730 3300005355 Bacteria 11957
24 Ga0070674_100004265 3300005356 Bacteria 8133
25 Ga0070659_100007432 3300005366 Bacteria 7960
26 Ga0070659_100128084 3300005366 Bacteria 2060
27 Ga0070662_100005513 3300005457 Bacteria 8088
28 Ga0070681_10018361 3300005458 Bacteria 6990
29 Ga0070685_10048396 3300005466 Bacteria 2448
30 Ga0070684_100001151 3300005535 Bacteria 19016
31 Ga0070684_100007746 3300005535 Bacteria 8372
32 Ga0068855_100000001 3300005563 Bacteria 818777
33 Ga0068855_100020523 3300005563 Bacteria 7922
34 Ga0068855_100044064 3300005563 Bacteria 5282
35 Ga0068855_100347210 3300005563 Bacteria 1635
36 Ga0070664_100003133 3300005564 Bacteria 13365
37 Ga0070664_100399425 3300005564 Unclassified 1257
38 Ga0068857_100001824 3300005577 Bacteria 17127
39 Ga0068857_100033281 3300005577 Bacteria 4559
40 Ga0068856_100000002 3300005614 Bacteria 372816
41 Ga0068856_100000248 3300005614 Bacteria 58638
42 Ga0068856_100000508 3300005614 Bacteria 43002
43 Ga0068856_100001392 3300005614 Bacteria 25402
44 Ga0068856_100023427 3300005614 Bacteria 6002
45 Ga0068856_100303763 3300005614 Bacteria 1614
46 Ga0068852_100000731 3300005616 Bacteria 21542
47 Ga0068852_100113838 3300005616 Bacteria 2464
48 Ga0068863_100042696 3300005841 Bacteria 4309
49 Ga0081455_10000020 3300005937 Bacteria 172997
50 Ga0075365_10000007 3300006038 Bacteria 116889
51 Ga0075365_10001546 3300006038 Bacteria 10532
52 Ga0075364_10000529 3300006051 Bacteria 19455
53 Ga0075364_10003326 3300006051 Bacteria 9120
54 Ga0075364_10004947 3300006051 Bacteria 7722
55 Ga0075364_10008800 3300006051 Bacteria 6042
56 Ga0075362_10013370 3300006177 Bacteria 3286
57 Ga0075362_10037427 3300006177 Bacteria 2127
58 Ga0075367_10046244 3300006178 Unclassified 2557
59 Ga0075367_10231821 3300006178 Bacteria 1156
60 Ga0075369_10000048 3300006186 Bacteria 30990
61 Ga0075366_10000003 3300006195 Bacteria 114017
62 Ga0075366_10000015 3300006195 Bacteria 66498
63 Ga0075366_10013253 3300006195 Bacteria 4689
64 Ga0097621_100000001 3300006237 Bacteria 632268
65 Ga0097621_100007441 3300006237 Bacteria 7833
66 Ga0075370_10008169 3300006353 Bacteria 5371
67 Ga0068871_100000001 3300006358 Bacteria 215987
68 Ga0068871_100053652 3300006358 Unclassified 3268
69 Ga0075428_100046695 3300006844 Unclassified 4756
70 Ga0075430_100112085 3300006846 Bacteria 2274
71 Ga0068865_100012825 3300006881 Bacteria 5284
72 Ga0105240_10103273 3300009093 Bacteria 3463
73 Ga0105240_10168253 3300009093 Bacteria 2598
74 Ga0105245_10025887 3300009098 Bacteria 5160
75 Ga0105245_10271723 3300009098 Bacteria 1654
76 Ga0105243_10002665 3300009148 Bacteria 14832
77 Ga0105241_10000009 3300009174 Bacteria 258876
78 Ga0105241_10005174 3300009174 Bacteria 9626
79 Ga0105241_10012736 3300009174 Bacteria 6172
80 Ga0105241_10224383 3300009174 Unclassified 1581
81 Ga0105241_10240961 3300009174 Unclassified 1529
82 Ga0105249_10011200 3300009553 Bacteria 7878
83 Ga0105239_10001218 3300010375 Bacteria 35078
84 Ga0105239_10035958 3300010375 Bacteria 5438
85 Ga0105246_10001634 3300011119 Bacteria 13347
86 Ga0105246_10002053 3300011119 Bacteria 12142
87 Ga0105246_10002341 3300011119 Bacteria 11444
88 Ga0157373_10000092 3300013100 Bacteria 74657
89 Ga0157373_10005089 3300013100 Bacteria 9882
90 Ga0157373_10007328 3300013100 Bacteria 8217
91 Ga0157371_10000207 3300013102 Bacteria 86226
92 Ga0157371_10003130 3300013102 Bacteria 15277
93 Ga0157371_10124572 3300013102 Bacteria 1832
94 Ga0157370_10000486 3300013104 Bacteria 49453
95 Ga0157370_10009668 3300013104 Bacteria 10257
96 Ga0157369_10000273 3300013105 Bacteria 69535
97 Ga0157369_10000528 3300013105 Bacteria 50494
98 Ga0157369_10000581 3300013105 Bacteria 47734
99 Ga0157369_10010108 3300013105 Bacteria 10769
100 Ga0157374_10000784 3300013296 Bacteria 27845
101 Ga0157374_10004684 3300013296 Bacteria 11485
102 Ga0157374_10005219 3300013296 Bacteria 10892
103 Ga0157372_10197770 3300013307 Unclassified 2328
104 Ga0163163_10091347 3300014325 Bacteria 3059
105 Ga0157377_10002260 3300014745 Bacteria 8469
106 Ga0157376_10000054 3300014969 Bacteria 99154
107 Ga0207647_10000243 3300025904 Bacteria 44569
108 Ga0207705_10000010 3300025909 Bacteria 518023
109 Ga0207705_10000057 3300025909 Bacteria 157369
110 Ga0207705_10001615 3300025909 Bacteria 17906
111 Ga0207654_10000002 3300025911 Bacteria 1460142
112 Ga0207654_10067615 3300025911 Unclassified 2111
113 Ga0207654_10124720 3300025911 Unclassified 1622
114 Ga0207707_10014176 3300025912 Bacteria 6945
115 Ga0207657_10007715 3300025919 Bacteria 10991
116 Ga0207649_10001657 3300025920 Bacteria 12901
117 Ga0207649_10017451 3300025920 Bacteria 4067
118 Ga0207687_10085683 3300025927 Unclassified 2286
119 Ga0207687_10188497 3300025927 Bacteria 1603
120 Ga0207690_10008254 3300025932 Bacteria 6177
121 Ga0207706_10000004 3300025933 Bacteria 280765
122 Ga0207669_10019922 3300025937 Bacteria 3504
123 Ga0207704_10000274 3300025938 Bacteria 24742
124 Ga0207661_10000323 3300025944 Bacteria 30448
125 Ga0207661_10091969 3300025944 Bacteria 2528
126 Ga0207679_10000069 3300025945 Bacteria 93919
127 Ga0207667_10000003 3300025949 Bacteria 822935
128 Ga0207667_10035786 3300025949 Bacteria 5326
129 Ga0207702_10000001 3300026078 Bacteria 895738
130 Ga0207702_10000079 3300026078 Bacteria 110210
131 Ga0207702_10000181 3300026078 Bacteria 75992
132 Ga0207702_10001317 3300026078 Bacteria 24861
133 Ga0207674_10000486 3300026116 Bacteria 52406
134 Ga0207698_10000567 3300026142 Bacteria 21566
135 Ga0209974_10003685 3300027876 Bacteria 5504
136 Ga0268266_10003261 3300028379 Bacteria 16356
137 Ga0265334_10000041 3300028573 Bacteria 98258
138 Ga0265338_10000368 3300028800 Bacteria 80896
139 Ga0265338_10002586 3300028800 Bacteria 26752
140 Ga0316179_1051111 3300030734 Bacteria 4455
141 Ga0316183_1039744 3300030742 Bacteria 4516
142 Ga0316181_1123581 3300030744 Bacteria 76132
143 Ga0316182_1306572 3300030745 Bacteria 15928
144 Ga0265340_10000084 3300031247 Bacteria 44441
145 Ga0265327_10004259 3300031251 Bacteria 12826
146 Ga0307406_10000001 3300031901 Bacteria 638191
147 Ga0307406_10000197 3300031901 Bacteria 36133
148 Ga0395900_0000001 3300037418 Bacteria 931146
149 Ga0395900_0125459 3300037418 Bacteria 2633
150 Ga0395898_0000002 3300037466 Bacteria 931013
151 Ga0395905_0000604 3300037471 Bacteria 48071
152 Ga0395901_0000006 3300038443 Bacteria 514112
153 Ga0395901_0003130 3300038443 Bacteria 16620
154 Ga0395901_0127909 3300038443 Unclassified 2670
155 Ga0395901_0387209 3300038443 Unclassified 1438
156 Ga0439464_0000001 3300042439 Bacteria 126033
157 Ga0495629_0036252 3300046459 Bacteria 3483
158 Ga0495588_0000344 3300046674 Bacteria 30080
159 Ga0495649_0000025 3300046694 Bacteria 175449
160 Ga0496109_0128853 3300048912 Bacteria 2361
161 Ga0501033_0134968 3300049570 Bacteria 1786
162 Ga0501037_0086170 3300049573 Bacteria 2274
163 nmdc:mga03683_2000_c1 3300050489 Bacteria 6230
164 nmdc:mga03683_43_c2 3300050489 Bacteria 43939
165 nmdc:mga00v17_1689_c1 3300050491 Bacteria 11488
166 nmdc:mga00v17_451476_c1 3300050491 Bacteria 834
167 nmdc:mga00v17_79_c1 3300050491 Bacteria 59101
168 nmdc:mga00v17_96_c1 3300050491 Bacteria 52369
169 nmdc:mga0yw44_1066_c1 3300050492 Bacteria 10532
170 nmdc:mga0yw44_3_c1 3300050492 Bacteria 561857
171 nmdc:mga0yw44_7_c1 3300050492 Bacteria 260877
172 nmdc:mga0k408_1_c1 3300050493 Bacteria 1089059
173 nmdc:mga0k408_3083_c1 3300050493 Bacteria 4708
174 nmdc:mga0k408_56_c1 3300050493 Bacteria 57024
175 nmdc:mga0k408_7539_c2 3300050493 Bacteria 4923
176 nmdc:mga06z11_65348_c1 3300050494 Unclassified 1909
177 nmdc:mga07m45_3562_c1 3300050496 Bacteria 7521
178 nmdc:mga07m45_8723_c1 3300050496 Bacteria 5223
179 nmdc:mga0qj67_55400_c1 3300050509 Bacteria 3141
180 nmdc:mga0sz30_10_c3 3300050516 Bacteria 40799
181 Ga0500644_0002325 3300053088 Bacteria 4783
182 Ga0500646_0014591 3300053090 Bacteria 2040
183 Ga0500583_0009165 3300053092 Bacteria 3601
184 Ga0500583_0019480 3300053092 Bacteria 2782
185 Ga0500651_0000235 3300053093 Bacteria 34448
186 Ga0500566_0000001 3300053094 Bacteria 1101031
187 Ga0500650_0000040 3300053098 Bacteria 48637
188 Ga0500594_0000001 3300053118 Bacteria 1178472
189 Ga0500614_000001 3300053123 Bacteria 1274484
190 Ga0500577_0015044 3300053142 Bacteria 2407
191 Ga0500579_008382 3300053143 Bacteria 6520
192 Ga0500633_0002504 3300053160 Bacteria 3797
193 Ga0500649_000006 3300053722 Bacteria 116211
194 Ga0500570_000001 3300053724 Bacteria 243552
195 Ga0500611_035636 3300053727 Bacteria 1061
196 Ga0157369_10393720
197 JGI24740J21852_10000966
198 JGI24740J21852_10022365
199 JGI24739J22299_10003380
200 JGI24737J22298_10000093
201 JGI24743J22301_10005228
202 JGI24735J21928_10000022
203 JGI24033J26618_1013520
204 JGI24742J22300_10000020
205 rootL2_10108084
206 rootH1_10079398
207 rootH1_10122575
208 Ga0065715_10004896
209 Ga0070658_10000009
210 Ga0070658_10000097
211 Ga0070658_10000943
212 Ga0070658_10279678
213 Ga0070683_100000239
214 Ga0070683_100051235
215 Ga0070660_100066110
216 Ga0070661_100009831
217 Ga0070661_100037697
218 Ga0070671_100003730
219 Ga0070674_100004265
220 Ga0070659_100007432
221 Ga0070659_100128084
222 Ga0070662_100005513
223 Ga0070681_10018361
224 Ga0070685_10048396
225 Ga0070684_100001151
226 Ga0070684_100007746
227 Ga0068855_100000001
228 Ga0068855_100020523
229 Ga0068855_100044064
230 Ga0068855_100347210
231 Ga0070664_100003133
232 Ga0070664_100399425
233 Ga0068857_100001824
234 Ga0068857_100033281
235 Ga0068856_100000002
236 Ga0068856_100000248
237 Ga0068856_100000508
238 Ga0068856_100001392
239 Ga0068856_100023427
240 Ga0068856_100303763
241 Ga0068852_100000731
242 Ga0068852_100113838
243 Ga0068863_100042696
244 Ga0081455_10000020
245 Ga0075365_10000007
246 Ga0075365_10001546
247 Ga0075364_10000529
248 Ga0075364_10003326
249 Ga0075364_10004947
250 Ga0075364_10008800
251 Ga0075362_10013370
252 Ga0075362_10037427
253 Ga0075367_10046244
254 Ga0075367_10231821
255 Ga0075369_10000048
256 Ga0075366_10000003
257 Ga0075366_10000015
258 Ga0075366_10013253
259 Ga0097621_100000001
260 Ga0097621_100007441
261 Ga0075370_10008169
262 Ga0068871_100000001
263 Ga0068871_100053652
264 Ga0075428_100046695
265 Ga0075430_100112085
266 Ga0068865_100012825
267 Ga0105240_10103273
268 Ga0105240_10168253
269 Ga0105245_10025887
270 Ga0105245_10271723
271 Ga0105243_10002665
272 Ga0105241_10000009
273 Ga0105241_10005174
274 Ga0105241_10012736
275 Ga0105241_10224383
276 Ga0105241_10240961
277 Ga0105249_10011200
278 Ga0105239_10001218
279 Ga0105239_10035958
280 Ga0105246_10001634
281 Ga0105246_10002053
282 Ga0105246_10002341
283 Ga0157373_10000092
284 Ga0157373_10005089
285 Ga0157373_10007328
286 Ga0157371_10000207
287 Ga0157371_10003130
288 Ga0157371_10124572
289 Ga0157370_10000486
290 Ga0157370_10009668
291 Ga0157369_10000273
292 Ga0157369_10000528
293 Ga0157369_10000581
294 Ga0157369_10010108
295 Ga0157374_10000784
296 Ga0157374_10004684
297 Ga0157374_10005219
298 Ga0157372_10197770
299 Ga0163163_10091347
300 Ga0157377_10002260
301 Ga0157376_10000054
302 Ga0207647_10000243
303 Ga0207705_10000010
304 Ga0207705_10000057
305 Ga0207705_10001615
306 Ga0207654_10000002
307 Ga0207654_10067615
308 Ga0207654_10124720
309 Ga0207707_10014176
310 Ga0207657_10007715
311 Ga0207649_10001657
312 Ga0207649_10017451
313 Ga0207687_10085683
314 Ga0207687_10188497
315 Ga0207690_10008254
316 Ga0207706_10000004
317 Ga0207669_10019922
318 Ga0207704_10000274
319 Ga0207661_10000323
320 Ga0207661_10091969
321 Ga0207679_10000069
322 Ga0207667_10000003
323 Ga0207667_10035786
324 Ga0207702_10000001
325 Ga0207702_10000079
326 Ga0207702_10000181
327 Ga0207702_10001317
328 Ga0207674_10000486
329 Ga0207698_10000567
330 Ga0209974_10003685
331 Ga0268266_10003261
332 Ga0265334_10000041
333 Ga0265338_10000368
334 Ga0265338_10002586
335 Ga0316179_1051111
336 Ga0316183_1039744
337 Ga0316181_1123581
338 Ga0316182_1306572
339 Ga0265340_10000084
340 Ga0265327_10004259
341 Ga0307406_10000001
342 Ga0307406_10000197
343 Ga0395900_0000001
344 Ga0395900_0125459
345 Ga0395898_0000002
346 Ga0395905_0000604
347 Ga0395901_0000006
348 Ga0395901_0003130
349 Ga0395901_0127909
350 Ga0395901_0387209
351 Ga0439464_0000001
352 Ga0495629_0036252
353 Ga0495588_0000344
354 Ga0495649_0000025
355 Ga0496109_0128853
356 Ga0501033_0134968
357 Ga0501037_0086170
358 nmdc:mga03683_2000_c1
359 nmdc:mga03683_43_c2
360 nmdc:mga00v17_1689_c1
361 nmdc:mga00v17_451476_c1
362 nmdc:mga00v17_79_c1
363 nmdc:mga00v17_96_c1
364 nmdc:mga0yw44_1066_c1
365 nmdc:mga0yw44_3_c1
366 nmdc:mga0yw44_7_c1
367 nmdc:mga0k408_1_c1
368 nmdc:mga0k408_3083_c1
369 nmdc:mga0k408_56_c1
370 nmdc:mga0k408_7539_c2
371 nmdc:mga06z11_65348_c1
372 nmdc:mga07m45_3562_c1
373 nmdc:mga07m45_8723_c1
374 nmdc:mga0qj67_55400_c1
375 nmdc:mga0sz30_10_c3
376 Ga0500644_0002325
377 Ga0500646_0014591
378 Ga0500583_0009165
379 Ga0500583_0019480
380 Ga0500651_0000235
381 Ga0500566_0000001
382 Ga0500650_0000040
383 Ga0500594_0000001
384 Ga0500614_000001
385 Ga0500577_0015044
386 Ga0500579_008382
387 Ga0500633_0002504
388 Ga0500649_000006
389 Ga0500570_000001
390 Ga0500611_035636

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06827

zf-FPG_IleRS

Zinc finger found in FPG and IleRS

289

314

0.97

PF01149

Fapy_DNA_glyco

Formamidopyrimidine-DNA glycosylase N-terminal domain

1

159

0.93

PF06831

H2TH

Formamidopyrimidine-DNA glycosylase H2TH domain

176

269

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
1k82-assembly4.cif.gz_D crystal structure of e.coli formamidopyrimidine-dna glycosylase (fpg) covalently trapped with dna 0.9197 2 288
7n2u-assembly1.cif.gz_SM elongating 70s ribosome complex in a hybrid-h1 pre-translocation (pre-h1) conformation 0.9172 185 220
1k82-assembly4.cif.gz_D crystal structure of e.coli formamidopyrimidine-dna glycosylase (fpg) covalently trapped with dna 0.913 2 288
1kfv-assembly1.cif.gz_A crystal structure of lactococcus lactis formamido-pyrimidine dna glycosylase (alias fpg or mutm) non covalently bound to an ap site containing dna. 0.9125 3 290
4cis-assembly1.cif.gz_A structure of mutm in complex with carbocyclic 8-oxo-g containing dna 0.9117 2 290
ID Description Score Start End Superfamily
3sarA02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9346 147 288 1.10.8.50
4ojuC00 Alpha Beta;Alpha-Beta Horseshoe;Leucine-rich repeat, LRR (right-handed beta-alpha superhelix);Ribonuclease Inhibitor 0.9306 48 70 3.80.10.10
1kfvB02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9276 149 284 1.10.8.50
1k82C02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9275 147 288 1.10.8.50
1kfvB02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9204 149 284 1.10.8.50
ID Description Score Start End GO Terms
AF-A0A660M9G6-F1-model_v4 Formamidopyrimidine-DNA glycosylase catalytic domain-containing protein 0.9714 1 138 GO:0003906
GO:0006284
GO:0008270
GO:0034039
AF-A0A660M9G6-F1-model_v4 Formamidopyrimidine-DNA glycosylase catalytic domain-containing protein 0.9645 1 138 GO:0003906
GO:0006284
GO:0008270
GO:0034039
AF-A0A7V5VN69-F1-model_v4 Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) (EC 3.2.2.23) (DNA-(apurinic or apyrimidinic site) lyase MutM) (AP lyase MutM) (EC 4.2.99.18) 0.9401 1 288 GO:0003684
GO:0006284
GO:0008270
GO:0034039
GO:0140078
AF-A0A2E9QU66-F1-model_v4 Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) (EC 3.2.2.23) (DNA-(apurinic or apyrimidinic site) lyase MutM) (AP lyase MutM) (EC 4.2.99.18) 0.9399 1 288 GO:0003684
GO:0006284
GO:0008270
GO:0034039
GO:0140078
AF-A0A2M7TI61-F1-model_v4 DNA-formamidopyrimidine glycosylase (EC 3.2.2.23) 0.939 1 288 GO:0003684
GO:0006284
GO:0008270
GO:0034039
GO:0140078

Map