F299156

General Info

Members Datasets Scaffolds Average Seq Length
194 146 178 493

Family's Representative Sequence

Representative Sequence 3300047322|Ga0495680_0001739|Ga0495680_0001739_9868_11628
Length 586
Sequence LIISGQFFRVLVVGLVPVSGFWPVFTGIFANRSEVKHFPLTSNVFGGISRPAMSVRVYKSKKMLDGPPFYVAAENTKIRGCTMTNHPVNSPVDADAERLASLGYQSEFKRDMSLWANFALGFTYLSPVVGIYTLFASSLMLGGPPMIWALLIAGVGQLLVALVFGEIVSQFPLAGGVYPWARRLWGRKWAWMTGWVYVMAMFSTIAGVAYGAAPYTASVVGFEPTVGANVICALVILAIATAINMMGTKVLAQAALIGFFAEIMGALVVGVYLLVFERHHDMSIFFNTFGSESTGSYTAAFLAASLIGVFQYYGFEACGDVAEEVPEPGLRIPKSMRRTIYIGGVAATFVCFALIMSVVDIGAVINGTLADPVSAILANAFGPVGSTAVLCVVLISFLSCVMSLQAAASRLIYAYARDKMIFASGLLSRFSHERHVPPYALLLSALLPGVIVVGSMISADALLKIISFSAVGIYIAFQMVVLAALRARLKGWKPSGEYQLGSLGLITNVGALVYGVAAMVNIGWPRTPNALWYDNWIVVLSSFAVIAVGFLYMWIARPHLRSAAIYGDAIPSRGGVVTGSVRRTTA

Samples

Sample ID Description Type Environment
1 2537561592 Arthrobacter crystallopoietes BAB-32 Isolate Rhizosphere
2 2643221715 Mycobacterium sp. Root265 Isolate Unclassified
3 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
4 2808606365 Phycicoccus sp. SLBN-51 Isolate Unclassified
5 2816332186 Peribacillus frigoritolerans 3612 Isolate Unclassified
6 2842682962 Bacillus sp. R-72492 Isolate Unclassified
7 2902810491 Mycolicibacterium sp. P9-22 Isolate Unclassified
8 2902837492 Mycolicibacterium sp. P1-18 Isolate Unclassified
9 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
10 2929212328 Mycolicibacterium sp. R-73050 Hybrid assembly Isolate Unclassified
11 2946003308 Arthrobacter agilis W3I6 Isolate Rhizosphere
12 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
13 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
14 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
15 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
16 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
17 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
18 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
19 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
20 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
21 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
26 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
27 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
28 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
29 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
30 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
31 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
32 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
33 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
34 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
35 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
38 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
39 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
40 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
41 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
50 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
51 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
52 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
53 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
54 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
55 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
56 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
57 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
58 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
59 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
60 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
61 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
62 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
63 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
64 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
65 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
66 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
67 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
68 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
69 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
73 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
74 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
75 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
76 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
77 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
78 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
79 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
80 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
81 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
82 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
83 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
84 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
85 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
86 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
87 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
88 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
89 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
90 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
91 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
92 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
93 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
94 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
95 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
96 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
97 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
98 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
99 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
100 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
101 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
102 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
117 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
118 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
119 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
120 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
121 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
122 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
123 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
124 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
125 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
126 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
127 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
128 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
131 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
132 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
133 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
134 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
135 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
136 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
137 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
138 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
139 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
140 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
141 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
142 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
143 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
144 8019775933 Pseudomonas sp. PvR083 Isolate Rhizosphere
145 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
146 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.75
Metatranscriptomes 0
Isolates 8.25

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.34
Nodule 0
Rhizoplane 4.64
Rhizosphere 75.77
Stem 0
Stem Tuber 0
Unclassified 8.25

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 LJQas_1000999 3300000549 Bacteria 4347
2 rootH2_10000496 3300003320 Bacteria 59982
3 Ga0065714_10014910 3300005288 Bacteria 2540
4 Ga0070680_100001229 3300005336 Bacteria 18454
5 Ga0070713_100059563 3300005436 Unclassified 3189
6 Ga0070711_100086001 3300005439 Unclassified 2254
7 Ga0070708_100004929 3300005445 Bacteria 10553
8 Ga0070681_10000001 3300005458 Bacteria 946857
9 Ga0070679_100012383 3300005530 Bacteria 8149
10 Ga0070679_100051083 3300005530 Bacteria 4118
11 Ga0068853_100007011 3300005539 Bacteria 9007
12 Ga0068855_100051177 3300005563 Bacteria 4865
13 Ga0081538_10002801 3300005981 Bacteria 16696
14 Ga0081540_1018367 3300005983 Bacteria 4292
15 Ga0075365_10019497 3300006038 Bacteria 4188
16 Ga0075365_10065286 3300006038 Bacteria 2439
17 Ga0075363_100002523 3300006048 Bacteria 7507
18 Ga0070716_100071325 3300006173 Unclassified 2042
19 Ga0070712_100060020 3300006175 Unclassified 2680
20 Ga0075362_10011090 3300006177 Bacteria 3542
21 Ga0075367_10000027 3300006178 Bacteria 31271
22 Ga0075367_10007197 3300006178 Bacteria 5681
23 Ga0075369_10001532 3300006186 Bacteria 7917
24 Ga0075370_10013452 3300006353 Bacteria 4350
25 Ga0075436_100119007 3300006914 Unclassified 1847
26 Ga0105240_10190302 3300009093 Bacteria 2413
27 Ga0105248_10000013 3300009177 Bacteria 328864
28 Ga0157371_10000196 3300013102 Bacteria 89174
29 Ga0157378_10128980 3300013297 Bacteria 2339
30 Ga0207426_1024371 3300025302 Bacteria 2054
31 Ga0207705_10000274 3300025909 Bacteria 49320
32 Ga0207707_10000001 3300025912 Bacteria 1212482
33 Ga0207707_10008742 3300025912 Bacteria 8790
34 Ga0207693_10055502 3300025915 Bacteria 3108
35 Ga0207660_10001013 3300025917 Bacteria 18630
36 Ga0207657_10000543 3300025919 Bacteria 40303
37 Ga0207652_10000353 3300025921 Bacteria 47513
38 Ga0207711_10000003 3300025941 Bacteria 1042791
39 Ga0207639_10001051 3300026041 Bacteria 18775
40 Ga0209813_10019319 3300027866 Bacteria 1892
41 Ga0265338_10000017 3300028800 Bacteria 344481
42 Ga0265338_10022127 3300028800 Bacteria 6598
43 Ga0265325_10000008 3300031241 Bacteria 186174
44 Ga0265340_10003372 3300031247 Bacteria 9024
45 Ga0265339_10001046 3300031249 Bacteria 21077
46 Ga0265331_10008332 3300031250 Bacteria 5902
47 Ga0307509_10014983 3300031507 Bacteria 9077
48 Ga0265314_10010639 3300031711 Bacteria 7656
49 Ga0265314_10038144 3300031711 Bacteria 3475
50 Ga0265342_10009016 3300031712 Bacteria 7086
51 Ga0307405_10059163 3300031731 Bacteria 2414
52 Ga0307405_10090066 3300031731 Bacteria 2028
53 Ga0307410_10034387 3300031852 Bacteria 3282
54 Ga0307407_10038812 3300031903 Bacteria 2642
55 Ga0307409_100086077 3300031995 Bacteria 2557
56 Ga0307416_100009621 3300032002 Bacteria 6338
57 Ga0307416_100087011 3300032002 Bacteria 2666
58 Ga0307416_100090859 3300032002 Bacteria 2620
59 Ga0307414_10072490 3300032004 Bacteria 2488
60 Ga0307415_100093544 3300032126 Bacteria 2183
61 Ga0373936_0041387 3300035113 Unclassified 1848
62 Ga0373943_0063623 3300035170 Unclassified 1850
63 Ga0373927_0100277 3300035695 Unclassified 1883
64 Ga0373925_0149757 3300037068 Unclassified 1831
65 Ga0395899_0005136 3300037312 Bacteria 10176
66 Ga0395900_0023440 3300037418 Bacteria 6317
67 Ga0395898_0018711 3300037466 Bacteria 7061
68 Ga0395901_0223839 3300038443 Bacteria 1966
69 Ga0436365_0368308 3300039437 Bacteria 2544
70 Ga0439436_0001582 3300041404 Bacteria 6627
71 Ga0439466_0000173 3300041411 Bacteria 25834
72 Ga0439465_0000620 3300041413 Bacteria 10783
73 Ga0451843_0164735 3300041509 Unclassified 2670
74 Ga0451853_0188756 3300041512 Bacteria 4579
75 Ga0451853_0921572 3300041512 Bacteria 3631
76 Ga0451853_2944441 3300041512 Bacteria 3912
77 Ga0439431_0002296 3300041997 Bacteria 4221
78 Ga0439433_0000487 3300041999 Bacteria 7362
79 Ga0439449_0011736 3300042007 Unclassified 3292
80 Ga0439449_0026395 3300042007 Bacteria 2168
81 Ga0439451_000137 3300042009 Bacteria 13605
82 Ga0439462_0031821 3300042015 Bacteria 1398
83 Ga0466972_0059285 3300044658 Bacteria 1837
84 Ga0466965_0000628 3300044683 Bacteria 12884
85 Ga0466970_0029408 3300044765 Bacteria 2892
86 Ga0466960_0000177 3300044901 Bacteria 21804
87 Ga0495590_0006314 3300046457 Bacteria 4639
88 Ga0495638_0001390 3300046460 Bacteria 22055
89 Ga0495580_0075774 3300046472 Unclassified 2346
90 Ga0495582_0050735 3300046473 Bacteria 2287
91 Ga0495582_0073290 3300046473 Unclassified 1895
92 Ga0495665_0027975 3300046531 Unclassified 3025
93 Ga0495672_0030642 3300047320 Bacteria 3371
94 Ga0495680_0001739 3300047322 Bacteria 23141
95 Ga0495673_0000384 3300047469 Bacteria 52386
96 Ga0496102_0285649 3300048905 Bacteria 1555
97 Ga0496105_0118764 3300048908 Bacteria 2181
98 Ga0496106_0002320 3300048909 Bacteria 14185
99 Ga0496110_0009553 3300048913 Bacteria 7850
100 Ga0496110_0024721 3300048913 Bacteria 5123
101 Ga0496111_0028088 3300048914 Bacteria 3985
102 Ga0496111_0054720 3300048914 Bacteria 2885
103 Ga0496114_0008473 3300048917 Bacteria 8147
104 Ga0496114_0024036 3300048917 Bacteria 4973
105 Ga0501031_0004381 3300049568 Bacteria 9145
106 Ga0501031_0060028 3300049568 Bacteria 2478
107 Ga0501032_0027698 3300049569 Bacteria 3895
108 Ga0501033_0000844 3300049570 Bacteria 27960
109 Ga0501033_0149138 3300049570 Bacteria 1688
110 Ga0501034_0002371 3300049571 Bacteria 22883
111 Ga0501034_0026083 3300049571 Bacteria 5951
112 Ga0501034_0061968 3300049571 Bacteria 3755
113 Ga0501036_0031699 3300049572 Bacteria 4467
114 Ga0501036_0050338 3300049572 Bacteria 3528
115 Ga0501037_0027921 3300049573 Bacteria 4170
116 Ga0501037_0047413 3300049573 Bacteria 3149
117 Ga0501037_0119342 3300049573 Bacteria 1897
118 Ga0501038_0024488 3300049574 Bacteria 5385
119 Ga0501038_0097147 3300049574 Bacteria 2457
120 Ga0501039_0016369 3300049575 Bacteria 5682
121 Ga0501039_0048492 3300049575 Bacteria 3283
122 Ga0501040_0061310 3300049576 Bacteria 2586
123 Ga0501042_0004154 3300049578 Bacteria 9209
124 Ga0501043_0014672 3300049579 Bacteria 6134
125 Ga0501046_0001903 3300049580 Bacteria 19814
126 Ga0501046_0061194 3300049580 Bacteria 2945
127 Ga0501047_0002297 3300049581 Bacteria 18289
128 Ga0501047_0027291 3300049581 Bacteria 5500
129 Ga0501047_0102198 3300049581 Bacteria 2746
130 Ga0501048_0012414 3300049582 Bacteria 6337
131 Ga0501048_0043722 3300049582 Bacteria 3206
132 Ga0501067_0000500 3300049583 Bacteria 21522
133 Ga0501069_0015652 3300049585 Bacteria 4066
134 Ga0501070_0000020 3300049586 Bacteria 169025
135 Ga0501070_0002045 3300049586 Bacteria 17738
136 Ga0501070_0098704 3300049586 Bacteria 2416
137 Ga0501071_0004227 3300049587 Bacteria 9092
138 Ga0501072_0003562 3300049588 Bacteria 11718
139 Ga0501072_0011176 3300049588 Bacteria 6853
140 Ga0501072_0111622 3300049588 Bacteria 2176
141 Ga0501073_0044795 3300049589 Bacteria 3118
142 Ga0501075_0101235 3300049591 Bacteria 2188
143 Ga0501076_0012232 3300049592 Bacteria 6416
144 Ga0501076_0012323 3300049592 Bacteria 6393
145 Ga0501079_0077008 3300049741 Bacteria 2580
146 Ga0501080_0000225 3300049742 Bacteria 42239
147 Ga0501080_0006313 3300049742 Bacteria 10637
148 Ga0501080_0047176 3300049742 Bacteria 4010
149 Ga0501081_0016504 3300049743 Bacteria 4883
150 Ga0501083_0014055 3300049744 Bacteria 5597
151 Ga0501035_0006186 3300049822 Bacteria 11259
152 Ga0501035_0008470 3300049822 Bacteria 9579
153 Ga0501035_0011787 3300049822 Bacteria 8094
154 Ga0501035_0089651 3300049822 Bacteria 2708
155 Ga0501044_0005187 3300049823 Bacteria 14499
156 Ga0501044_0006349 3300049823 Bacteria 13069
157 Ga0501044_0006911 3300049823 Bacteria 12490
158 Ga0501045_0008215 3300049824 Bacteria 7271
159 nmdc:mga03n38_13683_c1 3300050490 Bacteria 3090
160 nmdc:mga03n38_14177_c1 3300050490 Bacteria 3048
161 nmdc:mga00v17_45629_c1 3300050491 Bacteria 2649
162 nmdc:mga06z11_170_c1 3300050494 Bacteria 25704
163 nmdc:mga06z11_28050_c1 3300050494 Bacteria 2698
164 nmdc:mga04h51_3131_c2 3300050495 Bacteria 3090
165 nmdc:mga07m45_12153_c1 3300050496 Bacteria 4543
166 nmdc:mga0n895_13787_c1 3300050512 Bacteria 7309
167 nmdc:mga0rr50_67337_c1 3300050513 Unclassified 2719
168 nmdc:mga08x19_1392_c1 3300050514 Bacteria 14963
169 Ga0500644_0000014 3300053088 Bacteria 109650
170 Ga0500568_0005233 3300053139 Bacteria 6746
171 Ga0500568_0011449 3300053139 Bacteria 4115
172 Ga0500616_0003654 3300053153 Bacteria 11546
173 Ga0500616_0007535 3300053153 Bacteria 6890
174 Ga0501084_0051511 3300054114 Bacteria 3445
175 Ga0501084_0057654 3300054114 Bacteria 3250
176 Ga0501084_0114273 3300054114 Bacteria 2269
177 Ga0530510_0033316 3300061734 Bacteria 3710
178 Ga0530510_0074265 3300061734 Bacteria 2468

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048905 Ga0496102_0285649 Ga0496102_0285649_87_1262 367
2 3300050490 nmdc:mga03n38_14177_c1 nmdc:mga03n38_14177_c1_1783_3036 384
3 3300042015 Ga0439462_0031821 Ga0439462_0031821_44_1354 392
4 3300049582 Ga0501048_0043722 Ga0501048_0043722_16_1347 404
5 3300003320 rootH2_10000496 rootH2_1000049617 432
6 3300049573 Ga0501037_0027921 Ga0501037_0027921_665_2131 432
7 3300049586 Ga0501070_0000020 Ga0501070_0000020_161432_162898 432
8 3300049588 Ga0501072_0111622 Ga0501072_0111622_545_2041 432
9 3300049742 Ga0501080_0006313 Ga0501080_0006313_6798_8264 432
10 3300049822 Ga0501035_0011787 Ga0501035_0011787_1776_3242 432
11 3300049823 Ga0501044_0005187 Ga0501044_0005187_553_2019 432
12 iso_pu_bacteria 2842682962 2842687955 434
13 3300025912 Ga0207707_10008742 Ga0207707_100087422 437
14 3300028800 Ga0265338_10022127 Ga0265338_100221272 438
15 3300031247 Ga0265340_10003372 Ga0265340_100033724 438
16 3300031731 Ga0307405_10059163 Ga0307405_100591633 444
17 3300046457 Ga0495590_0006314 Ga0495590_0006314_2357_3886 444
18 3300037312 Ga0395899_0005136 Ga0395899_0005136_3273_4691 445
19 3300037418 Ga0395900_0023440 Ga0395900_0023440_494_1912 445
20 3300005336 Ga0070680_100001229 Ga0070680_1000012295 446
21 3300005458 Ga0070681_10000001 Ga0070681_10000001651 446
22 3300005530 Ga0070679_100012383 Ga0070679_1000123833 446
23 3300025912 Ga0207707_10000001 Ga0207707_10000001335 446
24 3300025917 Ga0207660_10001013 Ga0207660_1000101321 446
25 3300025921 Ga0207652_10000353 Ga0207652_1000035324 446
26 3300049571 Ga0501034_0026083 Ga0501034_0026083_2200_3708 446
27 3300006038 Ga0075365_10065286 Ga0075365_100652862 449
28 3300006177 Ga0075362_10011090 Ga0075362_100110903 449
29 3300006353 Ga0075370_10013452 Ga0075370_100134522 449
30 3300050490 nmdc:mga03n38_13683_c1 nmdc:mga03n38_13683_c1_970_2457 449
31 3300050491 nmdc:mga00v17_45629_c1 nmdc:mga00v17_45629_c1_1063_2550 449
32 3300050496 nmdc:mga07m45_12153_c1 nmdc:mga07m45_12153_c1_2194_3681 449
33 3300053088 Ga0500644_0000014 Ga0500644_0000014_26757_28247 449
34 3300049568 Ga0501031_0060028 Ga0501031_0060028_552_2084 450
35 3300049581 Ga0501047_0027291 Ga0501047_0027291_2277_3755 450
36 3300049588 Ga0501072_0003562 Ga0501072_0003562_9800_11278 450
37 3300054114 Ga0501084_0057654 Ga0501084_0057654_1491_2969 450
38 3300038443 Ga0395901_0223839 Ga0395901_0223839_419_1924 451
39 3300053139 Ga0500568_0005233 Ga0500568_0005233_2419_3942 452
40 3300053153 Ga0500616_0003654 Ga0500616_0003654_5655_7157 452
41 3300041509 Ga0451843_0164735 Ga0451843_0164735_105_1640 453
42 3300050512 nmdc:mga0n895_13787_c1 nmdc:mga0n895_13787_c1_140_1654 453
43 3300048917 Ga0496114_0008473 Ga0496114_0008473_6481_7968 454
44 3300031711 Ga0265314_10010639 Ga0265314_100106394 455
45 3300053153 Ga0500616_0007535 Ga0500616_0007535_389_1918 455
46 3300025302 Ga0207426_1024371 Ga0207426_10243712 456
47 3300028800 Ga0265338_10000017 Ga0265338_1000001713 456
48 3300031241 Ga0265325_10000008 Ga0265325_1000000892 456
49 3300031249 Ga0265339_10001046 Ga0265339_100010462 456
50 3300031250 Ga0265331_10008332 Ga0265331_100083322 456
51 3300031711 Ga0265314_10038144 Ga0265314_100381442 456
52 3300031712 Ga0265342_10009016 Ga0265342_100090164 456
53 3300046473 Ga0495582_0050735 Ga0495582_0050735_183_1682 456
54 3300048908 Ga0496105_0118764 Ga0496105_0118764_659_2158 456
55 3300048913 Ga0496110_0009553 Ga0496110_0009553_1007_2506 456
56 3300048914 Ga0496111_0028088 Ga0496111_0028088_1309_2808 456
57 3300005563 Ga0068855_100051177 Ga0068855_1000511774 457
58 3300025909 Ga0207705_10000274 Ga0207705_100002748 457
59 3300025919 Ga0207657_10000543 Ga0207657_1000054312 457
60 3300005539 Ga0068853_100007011 Ga0068853_1000070113 458
61 3300006038 Ga0075365_10019497 Ga0075365_100194972 458
62 3300009093 Ga0105240_10190302 Ga0105240_101903022 458
63 3300009177 Ga0105248_10000013 Ga0105248_10000013230 458
64 3300025941 Ga0207711_10000003 Ga0207711_10000003229 458
65 3300026041 Ga0207639_10001051 Ga0207639_1000105113 458
66 3300048917 Ga0496114_0024036 Ga0496114_0024036_776_2284 458
67 3300049568 Ga0501031_0004381 Ga0501031_0004381_2635_4179 458
68 3300049569 Ga0501032_0027698 Ga0501032_0027698_2213_3757 458
69 3300049570 Ga0501033_0149138 Ga0501033_0149138_80_1624 458
70 3300049573 Ga0501037_0047413 Ga0501037_0047413_1514_3058 458
71 3300049574 Ga0501038_0097147 Ga0501038_0097147_480_1982 458
72 3300049575 Ga0501039_0048492 Ga0501039_0048492_155_1699 458
73 3300049578 Ga0501042_0004154 Ga0501042_0004154_4815_6359 458
74 3300049580 Ga0501046_0061194 Ga0501046_0061194_1213_2757 458
75 3300049582 Ga0501048_0012414 Ga0501048_0012414_3937_5481 458
76 3300049583 Ga0501067_0000500 Ga0501067_0000500_13971_15449 458
77 3300049586 Ga0501070_0098704 Ga0501070_0098704_112_1581 458
78 3300049587 Ga0501071_0004227 Ga0501071_0004227_4755_6299 458
79 3300049588 Ga0501072_0011176 Ga0501072_0011176_1418_2962 458
80 3300049589 Ga0501073_0044795 Ga0501073_0044795_230_1708 458
81 3300049591 Ga0501075_0101235 Ga0501075_0101235_467_2011 458
82 3300049592 Ga0501076_0012232 Ga0501076_0012232_72_1616 458
83 3300049741 Ga0501079_0077008 Ga0501079_0077008_881_2359 458
84 3300049742 Ga0501080_0047176 Ga0501080_0047176_87_1553 458
85 3300049743 Ga0501081_0016504 Ga0501081_0016504_763_2307 458
86 3300049822 Ga0501035_0008470 Ga0501035_0008470_1198_2694 458
87 3300049822 Ga0501035_0089651 Ga0501035_0089651_564_2066 458
88 3300049823 Ga0501044_0006911 Ga0501044_0006911_10408_11910 458
89 3300049824 Ga0501045_0008215 Ga0501045_0008215_3838_5382 458
90 3300053139 Ga0500568_0011449 Ga0500568_0011449_1800_3317 458
91 3300054114 Ga0501084_0051511 Ga0501084_0051511_1450_2994 458
92 3300061734 Ga0530510_0033316 Ga0530510_0033316_1314_2858 458
93 iso_pu_bacteria 2643221962 2645725303 458
94 iso_pu_bacteria 8055037949 8055038933 458
95 3300005436 Ga0070713_100059563 Ga0070713_1000595633 459
96 3300005439 Ga0070711_100086001 Ga0070711_1000860013 459
97 3300006173 Ga0070716_100071325 Ga0070716_1000713253 459
98 3300006175 Ga0070712_100060020 Ga0070712_1000600202 459
99 3300006914 Ga0075436_100119007 Ga0075436_1001190071 459
100 3300025915 Ga0207693_10055502 Ga0207693_100555022 459
101 3300031507 Ga0307509_10014983 Ga0307509_100149838 459
102 3300035113 Ga0373936_0041387 Ga0373936_0041387_112_1593 459
103 3300035170 Ga0373943_0063623 Ga0373943_0063623_156_1637 459
104 3300035695 Ga0373927_0100277 Ga0373927_0100277_250_1731 459
105 3300037068 Ga0373925_0149757 Ga0373925_0149757_239_1720 459
106 3300044765 Ga0466970_0029408 Ga0466970_0029408_493_1998 459
107 3300046472 Ga0495580_0075774 Ga0495580_0075774_682_2163 459
108 3300046473 Ga0495582_0073290 Ga0495582_0073290_241_1722 459
109 3300046531 Ga0495665_0027975 Ga0495665_0027975_1382_2863 459
110 3300049571 Ga0501034_0061968 Ga0501034_0061968_1716_3224 459
111 3300049579 Ga0501043_0014672 Ga0501043_0014672_813_2321 459
112 3300049581 Ga0501047_0102198 Ga0501047_0102198_529_2037 459
113 3300049585 Ga0501069_0015652 Ga0501069_0015652_739_2247 459
114 3300049586 Ga0501070_0002045 Ga0501070_0002045_1140_2648 459
115 3300049742 Ga0501080_0000225 Ga0501080_0000225_25613_27121 459
116 3300049744 Ga0501083_0014055 Ga0501083_0014055_2796_4304 459
117 3300050513 nmdc:mga0rr50_67337_c1 nmdc:mga0rr50_67337_c1_907_2388 459
118 3300050514 nmdc:mga08x19_1392_c1 nmdc:mga08x19_1392_c1_5573_7054 459
119 3300054114 Ga0501084_0114273 Ga0501084_0114273_258_1766 459
120 iso_pu_bacteria 2995726249 2995728479 459
121 iso_pu_bacteria 8055034563 8055035396 459
122 3300005445 Ga0070708_100004929 Ga0070708_10000492911 460
123 3300006048 Ga0075363_100002523 Ga0075363_1000025232 461
124 3300006178 Ga0075367_10000027 Ga0075367_1000002721 461
125 3300006178 Ga0075367_10007197 Ga0075367_100071972 461
126 3300027866 Ga0209813_10019319 Ga0209813_100193191 461
127 3300041512 Ga0451853_0188756 Ga0451853_0188756_562_2079 461
128 3300050494 nmdc:mga06z11_170_c1 nmdc:mga06z11_170_c1_14827_16344 461
129 3300050494 nmdc:mga06z11_28050_c1 nmdc:mga06z11_28050_c1_679_2172 461
130 3300050495 nmdc:mga04h51_3131_c2 nmdc:mga04h51_3131_c2_1008_2525 461
131 iso_pu_bacteria 2808606365 2808872928 461
132 3300031852 Ga0307410_10034387 Ga0307410_100343871 462
133 3300032002 Ga0307416_100090859 Ga0307416_1000908593 462
134 3300005981 Ga0081538_10002801 Ga0081538_1000280114 463
135 3300041512 Ga0451853_2944441 Ga0451853_2944441_753_2276 463
136 iso_pu_bacteria 2902810491 2902815701 463
137 iso_pu_bacteria 8019775933 8019781536 463
138 3300005530 Ga0070679_100051083 Ga0070679_1000510831 464
139 3300049572 Ga0501036_0031699 Ga0501036_0031699_775_2295 464
140 3300049573 Ga0501037_0119342 Ga0501037_0119342_240_1760 464
141 3300049574 Ga0501038_0024488 Ga0501038_0024488_3583_5103 464
142 3300049575 Ga0501039_0016369 Ga0501039_0016369_3964_5484 464
143 3300049576 Ga0501040_0061310 Ga0501040_0061310_1047_2567 464
144 3300049592 Ga0501076_0012323 Ga0501076_0012323_414_1934 464
145 3300061734 Ga0530510_0074265 Ga0530510_0074265_703_2223 464
146 iso_pu_bacteria 2643221715 2644636172 465
147 iso_pu_bacteria 2996221748 2996224578 465
148 3300006186 Ga0075369_10001532 Ga0075369_100015322 466
149 3300031731 Ga0307405_10090066 Ga0307405_100900662 466
150 3300031903 Ga0307407_10038812 Ga0307407_100388122 466
151 3300032004 Ga0307414_10072490 Ga0307414_100724901 466
152 3300047320 Ga0495672_0030642 Ga0495672_0030642_1631_3160 466
153 3300005288 Ga0065714_10014910 Ga0065714_100149102 467
154 3300013297 Ga0157378_10128980 Ga0157378_101289802 467
155 3300041411 Ga0439466_0000173 Ga0439466_0000173_9641_11125 467
156 3300041413 Ga0439465_0000620 Ga0439465_0000620_567_2051 467
157 3300041997 Ga0439431_0002296 Ga0439431_0002296_1564_3048 467
158 3300044658 Ga0466972_0059285 Ga0466972_0059285_138_1646 467
159 3300044683 Ga0466965_0000628 Ga0466965_0000628_5824_7332 467
160 3300044901 Ga0466960_0000177 Ga0466960_0000177_2461_3969 467
161 3300047469 Ga0495673_0000384 Ga0495673_0000384_15842_17356 467
162 3300049570 Ga0501033_0000844 Ga0501033_0000844_7012_8529 467
163 3300037466 Ga0395898_0018711 Ga0395898_0018711_171_1709 468
164 3300041404 Ga0439436_0001582 Ga0439436_0001582_2986_4524 468
165 3300041999 Ga0439433_0000487 Ga0439433_0000487_5470_7008 468
166 3300042007 Ga0439449_0011736 Ga0439449_0011736_822_2360 468
167 3300042007 Ga0439449_0026395 Ga0439449_0026395_40_1578 468
168 3300049571 Ga0501034_0002371 Ga0501034_0002371_11403_12944 468
169 3300049572 Ga0501036_0050338 Ga0501036_0050338_1412_2953 468
170 3300049580 Ga0501046_0001903 Ga0501046_0001903_5228_6769 468
171 3300049581 Ga0501047_0002297 Ga0501047_0002297_13050_14591 468
172 3300049822 Ga0501035_0006186 Ga0501035_0006186_338_1879 468
173 3300049823 Ga0501044_0006349 Ga0501044_0006349_1642_3183 468
174 iso_pu_bacteria 2905926851 2905929685 468
175 iso_pu_bacteria 2929212328 2929219294 468
176 3300005983 Ga0081540_1018367 Ga0081540_10183672 469
177 3300042009 Ga0439451_000137 Ga0439451_000137_4162_5763 469
178 3300048913 Ga0496110_0024721 Ga0496110_0024721_2589_4124 469
179 3300048914 Ga0496111_0054720 Ga0496111_0054720_405_1940 469
180 iso_pu_bacteria 2537561592 2537901285 469
181 iso_pu_bacteria 2816332186 2816861587 469
182 iso_pu_bacteria 2946003308 2946006367 469
183 3300013102 Ga0157371_10000196 Ga0157371_1000019632 470
184 3300041512 Ga0451853_0921572 Ga0451853_0921572_1845_3368 470
185 3300046460 Ga0495638_0001390 Ga0495638_0001390_16114_17811 470
186 3300047322 Ga0495680_0001739 Ga0495680_0001739_9868_11628 470
187 3300048909 Ga0496106_0002320 Ga0496106_0002320_11099_12643 470
188 iso_pu_bacteria 2902837492 2902841618 470
189 3300031995 Ga0307409_100086077 Ga0307409_1000860772 471
190 3300032002 Ga0307416_100087011 Ga0307416_1000870112 471
191 3300039437 Ga0436365_0368308 Ga0436365_0368308_78_1643 471
192 3300032002 Ga0307416_100009621 Ga0307416_1000096212 472
193 3300032126 Ga0307415_100093544 Ga0307415_1000935442 472
194 3300000549 LJQas_1000999 LJQas_10009993 473

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13520

AA_permease_2

Amino acid permease

112

566

0.81

PF00324

AA_permease

Amino acid permease

122

564

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
7dsk-assembly1.cif.gz_B overall structure of the lat1-4f2hc bound with jx-075 0.8519 32 444
3gi9-assembly1.cif.gz_C crystal structure of apct transporter bound to 7f11 monoclonal fab fragment 0.8312 33 437
6f2g-assembly1.cif.gz_A bacterial asc transporter crystal structure in open to in conformation 0.8094 39 441
3gi8-assembly1.cif.gz_C crystal structure of apct k158a transporter bound to 7f11 monoclonal fab fragment 0.8021 33 437
5j4i-assembly1.cif.gz_A crystal structure of the l-arginine/agmatine antiporter from e. coli at 2.2 angstroem resolution 0.8001 34 436
ID Description Score Start End Superfamily
af_P32837_68_548_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.9248 31 439 1.20.1740.10
af_B9EWF0_29_508_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.9118 32 449 1.20.1740.10
af_Q10087_46_506_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.9077 34 447 1.20.1740.10
af_A0A0P0VCX1_3_391_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.9059 102 436 1.20.1740.10
af_O59813_45_518_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.9059 37 442 1.20.1740.10
ID Description Score Start End GO Terms
AF-A0A366IM31-F1-model_v4 Amino acid/polyamine/organocation transporter (APC superfamily) 0.9734 36 445 GO:0016020
GO:0022857
AF-A0A7C9VXI1-F1-model_v4 Amino acid permease 0.9705 36 451 GO:0016020
GO:0022857
AF-A0A257D2W3-F1-model_v4 deleted 0.9697 15 370
AF-A0A378WDW7-F1-model_v4 Amino acid permease-associated region 0.9671 15 419 GO:0016020
GO:0022857
AF-A0A6I4Q3U3-F1-model_v4 deleted 0.9659 36 448

Feature Viewer

pLDDT pTM Quality
80.86 0.84 High
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Predicted Structure (AlphaFold2)

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