F298973

General Info

Members Datasets Scaffolds Average Seq Length
194 136 388 133

Family's Representative Sequence

Representative Sequence 3300039450|Ga0436363_1601165|Ga0436363_1601165_376_858
Length 160
Sequence MTNLRVDTLTPGRHADGGEPIIATGGWTMVERTAVNPWAWSLSYGFNQGELVSGASQVLFCAGQTSVDADGAPQHPGDMAAQIALAVDNLESVLRESGMSLANVVRLNFYTTDVDAFFAHYGVLAARTSAAGVAPPGTLLGVARLAFPELMVEIEATAVA

Samples

Sample ID Description Type Environment
1 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
14 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
20 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
21 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
29 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
30 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
31 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
32 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
33 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
34 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
35 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
36 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
37 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
38 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
41 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
43 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
44 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
45 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
46 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
47 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
48 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
49 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
50 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
68 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
70 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
71 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
72 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
73 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
74 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
75 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
76 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
77 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
78 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
79 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
80 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
81 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
82 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
83 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
84 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
85 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
86 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
87 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
88 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
89 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
90 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
91 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
92 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
93 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
94 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
95 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
96 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
97 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
98 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
99 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
100 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
101 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
102 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
111 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
112 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
113 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
114 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
115 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
116 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
117 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
118 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
119 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
121 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
122 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
123 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
124 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
125 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
126 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
127 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
128 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
129 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
130 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
131 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
132 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
133 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
134 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
135 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
136 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.58
Nodule 0
Rhizoplane 5.15
Rhizosphere 91.24
Stem 0
Stem Tuber 0
Unclassified 24.23

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0436363_1601165 3300039450 Bacteria 1015
2 JGI25406J46586_10002206 3300003203 Bacteria 9184
3 Ga0065707_10463874 3300005295 Unclassified 788
4 Ga0068868_100525023 3300005338 Bacteria 1040
5 Ga0068868_101084500 3300005338 Unclassified 736
6 Ga0070660_100478103 3300005339 Bacteria 1035
7 Ga0070675_101974880 3300005354 Unclassified 538
8 Ga0070671_102090964 3300005355 Bacteria 504
9 Ga0070674_101536528 3300005356 Unclassified 599
10 Ga0070667_100658312 3300005367 Bacteria 967
11 Ga0070714_100147821 3300005435 Bacteria 2115
12 Ga0070713_100158352 3300005436 Bacteria 2019
13 Ga0070711_100153088 3300005439 Bacteria 1741
14 Ga0070705_100335548 3300005440 Unclassified 1097
15 Ga0070705_100818750 3300005440 Bacteria 742
16 Ga0070685_10628505 3300005466 Bacteria 776
17 Ga0070707_100963593 3300005468 Unclassified 818
18 Ga0070699_100000372 3300005518 Bacteria 43842
19 Ga0070699_100035650 3300005518 Bacteria 4300
20 Ga0070684_101123123 3300005535 Bacteria 739
21 Ga0070684_101496935 3300005535 Unclassified 636
22 Ga0070684_101729140 3300005535 Bacteria 590
23 Ga0068853_100266452 3300005539 Unclassified 1576
24 Ga0070695_100525454 3300005545 Unclassified 919
25 Ga0070696_100000458 3300005546 Bacteria 25550
26 Ga0070696_100008659 3300005546 Bacteria 6807
27 Ga0070696_100934047 3300005546 Bacteria 721
28 Ga0070693_100006014 3300005547 Bacteria 5870
29 Ga0070665_100333334 3300005548 Bacteria 1522
30 Ga0070665_102396406 3300005548 Unclassified 530
31 Ga0068857_100762657 3300005577 Bacteria 922
32 Ga0068861_100858788 3300005719 Unclassified 856
33 Ga0068858_102035077 3300005842 Unclassified 568
34 Ga0068860_101561466 3300005843 Bacteria 682
35 Ga0081455_10077940 3300005937 Bacteria 2724
36 Ga0081455_10088760 3300005937 Bacteria 2511
37 Ga0081455_10199406 3300005937 Unclassified 1500
38 Ga0081455_10595313 3300005937 Unclassified 722
39 Ga0081538_10002561 3300005981 Bacteria 17670
40 Ga0081538_10010517 3300005981 Bacteria 7586
41 Ga0081538_10038676 3300005981 Archaea 3073
42 Ga0081538_10048851 3300005981 Unclassified 2574
43 Ga0081539_10000047 3300005985 Bacteria 275235
44 Ga0075365_11076461 3300006038 Bacteria 566
45 Ga0075363_100180960 3300006048 Bacteria 1199
46 Ga0075432_10146894 3300006058 Bacteria 903
47 Ga0070716_100051195 3300006173 Bacteria 2347
48 Ga0070712_100021035 3300006175 Bacteria 4278
49 Ga0075428_100034050 3300006844 Bacteria 5619
50 Ga0075430_100007583 3300006846 Bacteria 9168
51 Ga0075430_100379359 3300006846 Bacteria 1167
52 Ga0075430_100554337 3300006846 Bacteria 948
53 Ga0075431_100010084 3300006847 Bacteria 9491
54 Ga0075431_100170481 3300006847 Bacteria 2236
55 Ga0075429_100067727 3300006880 Bacteria 3107
56 Ga0075429_100787149 3300006880 Bacteria 833
57 Ga0075429_101373090 3300006880 Unclassified 615
58 Ga0111539_10030214 3300009094 Bacteria 6589
59 Ga0105245_10319380 3300009098 Bacteria 1529
60 Ga0105245_11923113 3300009098 Bacteria 645
61 Ga0114129_10010820 3300009147 Bacteria 13000
62 Ga0114129_10667829 3300009147 Bacteria 1339
63 Ga0114129_10891168 3300009147 Bacteria 1128
64 Ga0105242_12710128 3300009176 Bacteria 545
65 Ga0105248_10235266 3300009177 Bacteria 2062
66 Ga0105239_10027822 3300010375 Bacteria 6220
67 Ga0105239_11304329 3300010375 Bacteria 837
68 Ga0163162_10144712 3300013306 Bacteria 2492
69 Ga0163162_12040057 3300013306 Unclassified 657
70 Ga0157375_11471953 3300013308 Bacteria 803
71 Ga0163163_10115040 3300014325 Bacteria 2721
72 Ga0157380_10401992 3300014326 Bacteria 1300
73 Ga0157376_10422089 3300014969 Unclassified 1295
74 Ga0207680_10639114 3300025903 Unclassified 762
75 Ga0207705_10340888 3300025909 Bacteria 1154
76 Ga0207707_10058149 3300025912 Bacteria 3365
77 Ga0207657_10395962 3300025919 Bacteria 1086
78 Ga0207646_11595206 3300025922 Unclassified 563
79 Ga0207687_10111317 3300025927 Bacteria 2032
80 Ga0207669_11170968 3300025937 Bacteria 651
81 Ga0207711_10169177 3300025941 Bacteria 1982
82 Ga0207711_11836799 3300025941 Unclassified 549
83 Ga0207712_10987678 3300025961 Bacteria 747
84 Ga0207668_11823481 3300025972 Bacteria 549
85 Ga0207658_10405049 3300025986 Bacteria 1200
86 Ga0207703_11429019 3300026035 Unclassified 665
87 Ga0207708_10327706 3300026075 Unclassified 1251
88 Ga0207702_10561947 3300026078 Bacteria 1117
89 Ga0207674_11645359 3300026116 Unclassified 610
90 Ga0207675_100132195 3300026118 Bacteria 2366
91 Ga0207675_100307790 3300026118 Unclassified 1544
92 Ga0207675_102748521 3300026118 Bacteria 500
93 Ga0207683_10658279 3300026121 Bacteria 970
94 Ga0207428_10073404 3300027907 Bacteria 2684
95 Ga0268266_10201934 3300028379 Bacteria 1820
96 Ga0307405_10856288 3300031731 Unclassified 766
97 Ga0307410_10057645 3300031852 Bacteria 2646
98 Ga0307412_10459750 3300031911 Unclassified 1051
99 Ga0307416_101260688 3300032002 Bacteria 845
100 Ga0307416_101377419 3300032002 Unclassified 811
101 Ga0307415_102439756 3300032126 Unclassified 514
102 Ga0373928_0058497 3300035084 Bacteria 927
103 Ga0373941_0077355 3300035115 Bacteria 1117
104 Ga0373937_0523055 3300036401 Bacteria 1127
105 Ga0316584_0662392 3300036712 Bacteria 719
106 Ga0395900_0758305 3300037418 Unclassified 900
107 Ga0395901_1783447 3300038443 Unclassified 565
108 Ga0436365_1200274 3300039437 Bacteria 1929
109 Ga0466963_0070431 3300044694 Unclassified 2352
110 Ga0466964_0123144 3300044706 Bacteria 1171
111 Ga0466971_0591621 3300044719 Unclassified 553
112 Ga0451576_0392373 3300045051 Bacteria 1455
113 Ga0451576_2016372 3300045051 Unclassified 594
114 Ga0466967_0414426 3300045976 Bacteria 1312
115 Ga0495608_0113573 3300046511 Bacteria 1740
116 Ga0495640_0110040 3300046533 Bacteria 1801
117 Ga0495640_0495106 3300046533 Bacteria 744
118 Ga0495634_0693911 3300046642 Unclassified 586
119 Ga0495635_0202037 3300046663 Unclassified 1348
120 Ga0495600_0290178 3300046809 Bacteria 1034
121 Ga0495604_0258897 3300047317 Bacteria 1183
122 Ga0495604_0469534 3300047317 Bacteria 820
123 Ga0495680_0171504 3300047322 Bacteria 1570
124 Ga0496100_1131596 3300048903 Bacteria 617
125 Ga0496101_0010017 3300048904 Bacteria 6244
126 Ga0496102_0049402 3300048905 Bacteria 3827
127 Ga0496105_0012948 3300048908 Bacteria 6610
128 Ga0496107_0286857 3300048910 Bacteria 1225
129 Ga0496110_0319462 3300048913 Bacteria 1414
130 Ga0496112_0238983 3300048915 Unclassified 1769
131 Ga0496112_0746962 3300048915 Bacteria 905
132 Ga0496113_0070333 3300048916 Bacteria 2660
133 Ga0496115_0027622 3300048918 Bacteria 4441
134 Ga0501033_0208004 3300049570 Unclassified 1396
135 Ga0501036_0050657 3300049572 Unclassified 3516
136 Ga0501036_0820023 3300049572 Bacteria 766
137 Ga0501038_0206023 3300049574 Bacteria 1576
138 Ga0501038_0244993 3300049574 Bacteria 1422
139 Ga0501040_0754709 3300049576 Bacteria 704
140 Ga0501041_0203885 3300049577 Bacteria 1240
141 Ga0501043_1312613 3300049579 Unclassified 505
142 Ga0501046_0364626 3300049580 Bacteria 1047
143 Ga0501048_0163829 3300049582 Bacteria 1574
144 Ga0501071_0184828 3300049587 Bacteria 1562
145 Ga0501071_1370975 3300049587 Bacteria 546
146 Ga0501072_0225657 3300049588 Bacteria 1493
147 Ga0501072_1050175 3300049588 Bacteria 634
148 Ga0501074_0070183 3300049590 Bacteria 2519
149 Ga0501075_0026569 3300049591 Bacteria 4263
150 Ga0501075_0046337 3300049591 Bacteria 3266
151 Ga0501075_0673094 3300049591 Bacteria 789
152 Ga0501076_0005178 3300049592 Bacteria 9336
153 Ga0501076_0091727 3300049592 Bacteria 2444
154 Ga0501077_0086040 3300049593 Bacteria 1993
155 Ga0501080_0234747 3300049742 Unclassified 1676
156 Ga0501081_0041023 3300049743 Bacteria 3169
157 Ga0501081_0781033 3300049743 Unclassified 718
158 Ga0501083_0416841 3300049744 Unclassified 874
159 Ga0501035_0188871 3300049822 Bacteria 1772
160 Ga0501035_0561692 3300049822 Bacteria 934
161 Ga0501045_0118629 3300049824 Bacteria 1964
162 Ga0501045_0456448 3300049824 Bacteria 950
163 Ga0501045_0967535 3300049824 Bacteria 624
164 nmdc:mga05p37_1081122_c1 3300050507 Unclassified 842
165 nmdc:mga05p37_1571790_c1 3300050507 Unclassified 650
166 nmdc:mga05p37_732055_c1 3300050507 Bacteria 1093
167 nmdc:mga05p37_7661_c1 3300050507 Bacteria 12740
168 nmdc:mga09592_10707_c1 3300050508 Bacteria 7465
169 nmdc:mga09592_1445760_c1 3300050508 Unclassified 561
170 nmdc:mga0qj67_1609_c1 3300050509 Bacteria 15870
171 nmdc:mga0qj67_394229_c1 3300050509 Bacteria 1117
172 nmdc:mga0qj67_422545_c1 3300050509 Bacteria 1074
173 nmdc:mga06r32_7635_c1 3300050510 Bacteria 9726
174 nmdc:mga08y16_28355_c1 3300050511 Bacteria 5902
175 nmdc:mga08y16_642338_c1 3300050511 Bacteria 1066
176 nmdc:mga0a205_248385_c1 3300050515 Bacteria 1659
177 Ga0495601_0050166 3300053077 Bacteria 2632
178 Ga0495595_0061304 3300053084 Bacteria 1761
179 Ga0495595_0193388 3300053084 Bacteria 1011
180 Ga0495619_0032434 3300053085 Bacteria 3390
181 Ga0495619_0087955 3300053085 Bacteria 2101
182 Ga0500583_0141488 3300053092 Bacteria 1196
183 Ga0500616_0000029 3300053153 Bacteria 428959
184 Ga0500627_0143697 3300053158 Bacteria 1078
185 Ga0501084_0004916 3300054114 Bacteria 10921
186 Ga0501084_0108648 3300054114 Bacteria 2330
187 Ga0590077_064731 3300059426 Bacteria 831
188 Ga0501082_0155925 3300060353 Bacteria 1984
189 Ga0501082_0257768 3300060353 Bacteria 1517
190 Ga0501082_0904804 3300060353 Bacteria 772
191 Ga0501082_1174038 3300060353 Bacteria 671
192 Ga0530510_0004116 3300061734 Bacteria 10039
193 Ga0530510_0275016 3300061734 Bacteria 1257
194 Ga0530510_0887793 3300061734 Unclassified 681
195 Ga0436363_1601165
196 JGI25406J46586_10002206
197 Ga0065707_10463874
198 Ga0068868_100525023
199 Ga0068868_101084500
200 Ga0070660_100478103
201 Ga0070675_101974880
202 Ga0070671_102090964
203 Ga0070674_101536528
204 Ga0070667_100658312
205 Ga0070714_100147821
206 Ga0070713_100158352
207 Ga0070711_100153088
208 Ga0070705_100335548
209 Ga0070705_100818750
210 Ga0070685_10628505
211 Ga0070707_100963593
212 Ga0070699_100000372
213 Ga0070699_100035650
214 Ga0070684_101123123
215 Ga0070684_101496935
216 Ga0070684_101729140
217 Ga0068853_100266452
218 Ga0070695_100525454
219 Ga0070696_100000458
220 Ga0070696_100008659
221 Ga0070696_100934047
222 Ga0070693_100006014
223 Ga0070665_100333334
224 Ga0070665_102396406
225 Ga0068857_100762657
226 Ga0068861_100858788
227 Ga0068858_102035077
228 Ga0068860_101561466
229 Ga0081455_10077940
230 Ga0081455_10088760
231 Ga0081455_10199406
232 Ga0081455_10595313
233 Ga0081538_10002561
234 Ga0081538_10010517
235 Ga0081538_10038676
236 Ga0081538_10048851
237 Ga0081539_10000047
238 Ga0075365_11076461
239 Ga0075363_100180960
240 Ga0075432_10146894
241 Ga0070716_100051195
242 Ga0070712_100021035
243 Ga0075428_100034050
244 Ga0075430_100007583
245 Ga0075430_100379359
246 Ga0075430_100554337
247 Ga0075431_100010084
248 Ga0075431_100170481
249 Ga0075429_100067727
250 Ga0075429_100787149
251 Ga0075429_101373090
252 Ga0111539_10030214
253 Ga0105245_10319380
254 Ga0105245_11923113
255 Ga0114129_10010820
256 Ga0114129_10667829
257 Ga0114129_10891168
258 Ga0105242_12710128
259 Ga0105248_10235266
260 Ga0105239_10027822
261 Ga0105239_11304329
262 Ga0163162_10144712
263 Ga0163162_12040057
264 Ga0157375_11471953
265 Ga0163163_10115040
266 Ga0157380_10401992
267 Ga0157376_10422089
268 Ga0207680_10639114
269 Ga0207705_10340888
270 Ga0207707_10058149
271 Ga0207657_10395962
272 Ga0207646_11595206
273 Ga0207687_10111317
274 Ga0207669_11170968
275 Ga0207711_10169177
276 Ga0207711_11836799
277 Ga0207712_10987678
278 Ga0207668_11823481
279 Ga0207658_10405049
280 Ga0207703_11429019
281 Ga0207708_10327706
282 Ga0207702_10561947
283 Ga0207674_11645359
284 Ga0207675_100132195
285 Ga0207675_100307790
286 Ga0207675_102748521
287 Ga0207683_10658279
288 Ga0207428_10073404
289 Ga0268266_10201934
290 Ga0307405_10856288
291 Ga0307410_10057645
292 Ga0307412_10459750
293 Ga0307416_101260688
294 Ga0307416_101377419
295 Ga0307415_102439756
296 Ga0373928_0058497
297 Ga0373941_0077355
298 Ga0373937_0523055
299 Ga0316584_0662392
300 Ga0395900_0758305
301 Ga0395901_1783447
302 Ga0436365_1200274
303 Ga0466963_0070431
304 Ga0466964_0123144
305 Ga0466971_0591621
306 Ga0451576_0392373
307 Ga0451576_2016372
308 Ga0466967_0414426
309 Ga0495608_0113573
310 Ga0495640_0110040
311 Ga0495640_0495106
312 Ga0495634_0693911
313 Ga0495635_0202037
314 Ga0495600_0290178
315 Ga0495604_0258897
316 Ga0495604_0469534
317 Ga0495680_0171504
318 Ga0496100_1131596
319 Ga0496101_0010017
320 Ga0496102_0049402
321 Ga0496105_0012948
322 Ga0496107_0286857
323 Ga0496110_0319462
324 Ga0496112_0238983
325 Ga0496112_0746962
326 Ga0496113_0070333
327 Ga0496115_0027622
328 Ga0501033_0208004
329 Ga0501036_0050657
330 Ga0501036_0820023
331 Ga0501038_0206023
332 Ga0501038_0244993
333 Ga0501040_0754709
334 Ga0501041_0203885
335 Ga0501043_1312613
336 Ga0501046_0364626
337 Ga0501048_0163829
338 Ga0501071_0184828
339 Ga0501071_1370975
340 Ga0501072_0225657
341 Ga0501072_1050175
342 Ga0501074_0070183
343 Ga0501075_0026569
344 Ga0501075_0046337
345 Ga0501075_0673094
346 Ga0501076_0005178
347 Ga0501076_0091727
348 Ga0501077_0086040
349 Ga0501080_0234747
350 Ga0501081_0041023
351 Ga0501081_0781033
352 Ga0501083_0416841
353 Ga0501035_0188871
354 Ga0501035_0561692
355 Ga0501045_0118629
356 Ga0501045_0456448
357 Ga0501045_0967535
358 nmdc:mga05p37_1081122_c1
359 nmdc:mga05p37_1571790_c1
360 nmdc:mga05p37_732055_c1
361 nmdc:mga05p37_7661_c1
362 nmdc:mga09592_10707_c1
363 nmdc:mga09592_1445760_c1
364 nmdc:mga0qj67_1609_c1
365 nmdc:mga0qj67_394229_c1
366 nmdc:mga0qj67_422545_c1
367 nmdc:mga06r32_7635_c1
368 nmdc:mga08y16_28355_c1
369 nmdc:mga08y16_642338_c1
370 nmdc:mga0a205_248385_c1
371 Ga0495601_0050166
372 Ga0495595_0061304
373 Ga0495595_0193388
374 Ga0495619_0032434
375 Ga0495619_0087955
376 Ga0500583_0141488
377 Ga0500616_0000029
378 Ga0500627_0143697
379 Ga0501084_0004916
380 Ga0501084_0108648
381 Ga0590077_064731
382 Ga0501082_0155925
383 Ga0501082_0257768
384 Ga0501082_0904804
385 Ga0501082_1174038
386 Ga0530510_0004116
387 Ga0530510_0275016
388 Ga0530510_0887793

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01042

Ribonuc_L-PSP

Endoribonuclease L-PSP

44

160

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
7cd2-assembly5.cif.gz_R crystal structure of the s103f mutant of bacillus subtilis (natto) yabj protein. 0.8923 28 132
6izh-assembly1.cif.gz_E crystal structure of deaminase amne from pseudomonas sp. ap-3 0.8771 27 131
5v4f-assembly1.cif.gz_A crystal structure of the protein of unknown function of the conserved rid protein family yyfb from yersinia pestis 0.8654 4 132
5yu2-assembly1.cif.gz_B structure of ribonuclease yabj 0.8593 19 131
5hp7-assembly1.cif.gz_A crystal structures of rida in the apo form 0.8593 19 132
ID Description Score Start End Superfamily
af_Q86I26_20_139_3.30.1330.40 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.8592 25 132 3.30.1330.40
5hp8A00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.856 19 132 3.30.1330.40
5hp8A00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.8486 19 132 3.30.1330.40
af_Q86KR5_2_129_3.30.1330.40 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.8475 18 131 3.30.1330.40
3k0tB00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.8147 5 132 3.30.1330.40
ID Description Score Start End GO Terms
AF-A0A7C1YLS3-F1-model_v4 RidA family protein 0.9859 3 132
AF-A0A7C7IDA5-F1-model_v4 RidA family protein 0.9853 3 132
AF-A0A3L7XAR6-F1-model_v4 RidA family protein 0.98 3 132
AF-A0A0E3ZZW8-F1-model_v4 Uncharacterized protein 0.9794 3 132
AF-A0A7W5ALN3-F1-model_v4 Enamine deaminase RidA (YjgF/YER057c/UK114 family) 0.9791 1 132

Map