F298602

General Info

Members Datasets Scaffolds Average Seq Length
194 154 159 126

Family's Representative Sequence

Representative Sequence 3300009148|Ga0105243_10684713|Ga0105243_106847131
Length 141
Sequence MDSRFRGNDGKGNDMPREIISTPHAPGAIGTYSQAVKCGNTVYLSGQIPLDPATGQLVEGAFEIHARRVFDNLKALCEASGGSLAQIAKLNVFLTDLGNFAEVNRIMAEYFSAPYPARAAIGVAALPRGSVVEMDGILVLD

Samples

Sample ID Description Type Environment
1 2513237159 Rhizobium giardinii bv. giardinii H152 Isolate Nodule
2 2558860100 Sinorhizobium sp. PC2 Isolate Nodule
3 2582581866 Rhizobium sp. CF097 Isolate Rhizosphere
4 2599185352 Sinorhizobium sp. NFACC03 Isolate Rhizoplane
5 2617270742 Rhizobium miluonense HAMBI 2971 Isolate Nodule
6 2643221557 Ensifer sp. Root558 Isolate Unclassified
7 2643221610 Ensifer sp. Root74 Isolate Unclassified
8 2643221668 Ensifer sp. Root423 Isolate Unclassified
9 2643221675 Ensifer sp. Root1298 Isolate Unclassified
10 2643221680 Ensifer sp. Root1312 Isolate Unclassified
11 2643221723 Ensifer sp. Root278 Isolate Unclassified
12 2643221726 Ensifer sp. Root954 Isolate Unclassified
13 2802429605 Rhizobium sophoriradicis L101 Isolate Nodule
14 2802429634 Rhizobium anhuiense S10 Isolate Nodule
15 2802429635 Rhizobium anhuiense Y27 Isolate Nodule
16 2802429636 Rhizobium anhuiense JX3 Isolate Nodule
17 2838694306 Rhizobium leguminosarum SEMIA 421 Isolate Nodule
18 2840764183 Phyllobacterium sophorae CCBAU 03422 Isolate Unclassified
19 2842118031 Rhizobium esperanzae SEMIA 420 Isolate Nodule
20 2842377471 Rhizobium leguminosarum SEMIA 4024 Isolate Nodule
21 2842384541 Rhizobium leguminosarum SEMIA 4025 Isolate Nodule
22 2842521101 Rhizobium giardinii SEMIA 4084 Isolate Nodule
23 2881714928 Pseudidiomarina mangrovi ZQ330 Isolate Rhizosphere
24 2882456835 Microvirga sp. KLBC 81 Isolate Unclassified
25 2896384573 Ensifer sp. MPMI2T Isolate Unclassified
26 2919513703 Luteimonas sp. 3794 Isolate Unclassified
27 2920822456 Ensifer sesbaniae CCBAU 65729 Isolate Unclassified
28 2958092219 Mesorhizobium sp. M8A.F.Ca.ET.059.01.1.1 Isolate Nodule
29 2977530762 Sinorhizobium medicae USDA1606 Isolate Nodule
30 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
31 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
32 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
33 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
34 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
35 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
36 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
37 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
38 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
39 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
40 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
41 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
42 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
43 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
44 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
45 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
46 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
47 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
48 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
49 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
50 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
51 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
52 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
53 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
54 3300009763 Root nodule microbial communities of legume samples collected from Mexico - Siratro Mexico nodule mix Metagenome Nodule
55 3300009765 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule Metagenome Nodule
56 3300009766 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule Metagenome Nodule
57 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
58 3300012477 Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.3.yng.040610 Metagenome Rhizosphere
59 3300012482 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.130510 Metagenome Rhizosphere
60 3300012510 Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.9.old.080610 Metagenome Rhizosphere
61 3300012512 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.old.270510 Metagenome Rhizosphere
62 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
63 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
64 3300013249 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.3_F06 Metagenome Rhizosphere
65 3300015690 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_D05 Metagenome Rhizosphere
66 3300022740 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules Metagenome Nodule
67 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
68 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
69 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
71 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
72 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
74 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
75 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
90 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
91 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
92 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
93 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
94 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
95 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
96 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
97 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
98 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
99 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
100 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
101 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
102 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
103 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
104 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
105 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
106 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
107 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
108 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
109 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
110 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
111 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
112 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
113 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
114 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
115 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
116 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
117 3300042001 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z081617_5542 Metagenome Rhizosphere
118 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
119 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
120 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
121 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
122 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
123 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
124 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
125 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
126 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
127 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
128 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
129 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
130 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
131 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
132 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
133 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
134 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
135 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
136 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
137 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
138 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
139 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
140 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
141 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
142 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
143 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
144 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
145 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
146 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
147 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
148 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
149 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
150 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
151 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
152 643692032 Sinorhizobium fredii NGR234 Isolate Nodule
153 8057575449 Rhizobium mayense CCGE526 Isolate Nodule
154 8057874678 Rhizobium acaciae 1AS12 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 79.38
Metatranscriptomes 2.58
Isolates 18.04

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.92
Nodule 11.86
Rhizoplane 9.28
Rhizosphere 53.61
Stem 0
Stem Tuber 0
Unclassified 11.34

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10024360 3300001989 Bacteria 2134
2 JGI24737J22298_10089665 3300001990 Bacteria 912
3 JGI24735J21928_10000319 3300002067 Bacteria 16706
4 JGI25159J45721_1000010 3300002987 Bacteria 162590
5 JGI25160J50197_1000038 3300003354 Bacteria 162590
6 JGI25161J50226_1001313 3300003374 Bacteria 7799
7 Ga0055526_1003848 3300003771 Bacteria 9310
8 Ga0055524_1001561 3300003775 Bacteria 12891
9 Ga0055524_1073579 3300003775 Bacteria 648
10 Ga0055536_1054760 3300003781 Bacteria 856
11 Ga0055531_10014970 3300003794 Bacteria 3455
12 Ga0055531_10046211 3300003794 Bacteria 1199
13 Ga0055543_1000098 3300004625 Bacteria 75216
14 Ga0065165_1000077 3300005262 Bacteria 162630
15 Ga0070670_100134233 3300005331 Bacteria 2138
16 Ga0070670_101040880 3300005331 Bacteria 745
17 Ga0070692_10273083 3300005345 Bacteria 1021
18 Ga0070675_100879207 3300005354 Bacteria 821
19 Ga0070699_100468155 3300005518 Bacteria 1143
20 Ga0070696_101085444 3300005546 Bacteria 672
21 Ga0070696_101254507 3300005546 Unclassified 628
22 Ga0068852_101018601 3300005616 Bacteria 847
23 Ga0068864_100106283 3300005618 Bacteria 2496
24 Ga0068861_100948028 3300005719 Bacteria 818
25 Ga0068863_101163490 3300005841 Bacteria 777
26 Ga0075366_10013149 3300006195 Bacteria 4706
27 Ga0075366_10169443 3300006195 Bacteria 1325
28 Ga0105243_10684713 3300009148 Bacteria 997
29 Ga0105249_10003866 3300009553 Bacteria 12928
30 Ga0105249_12841009 3300009553 Bacteria 556
31 Ga0123340_1045276 3300009763 Bacteria 1835
32 Ga0123341_1147195 3300009765 Bacteria 614
33 Ga0123342_1011944 3300009766 Bacteria 9302
34 Ga0105239_10021048 3300010375 Bacteria 7197
35 Ga0105239_11012113 3300010375 Bacteria 955
36 Ga0157336_1001518 3300012477 Bacteria 1214
37 Ga0157318_1002912 3300012482 Bacteria 962
38 Ga0157316_1001455 3300012510 Bacteria 1472
39 Ga0157327_1002039 3300012512 Bacteria 1345
40 Ga0157370_12073906 3300013104 Bacteria 510
41 Ga0157369_10486163 3300013105 Bacteria 1278
42 Ga0171463_1018 3300013249 Bacteria 43939
43 Ga0183363_1272 3300015690 Bacteria 8282
44 Ga0228710_1023266 3300022740 Bacteria 4561
45 Ga0209436_100052 3300025208 Bacteria 64094
46 Ga0209130_1000054 3300025284 Bacteria 212299
47 Ga0209676_1012644 3300025292 Bacteria 3297
48 Ga0209676_1030740 3300025292 Bacteria 1637
49 Ga0209025_1000392 3300025294 Bacteria 90826
50 Ga0209564_1000189 3300025295 Bacteria 144041
51 Ga0209050_1004138 3300025298 Bacteria 10056
52 Ga0209256_1000587 3300025299 Bacteria 50768
53 Ga0209256_1002560 3300025299 Bacteria 14527
54 Ga0207426_1000127 3300025302 Bacteria 212942
55 Ga0209051_1046457 3300025303 Bacteria 1493
56 Ga0209257_1011418 3300025304 Bacteria 4278
57 Ga0209257_1103667 3300025304 Bacteria 689
58 Ga0207647_10030216 3300025904 Bacteria 3498
59 Ga0207681_10205269 3300025923 Bacteria 1515
60 Ga0207687_11735701 3300025927 Bacteria 535
61 Ga0207644_11310834 3300025931 Bacteria 608
62 Ga0207711_11051996 3300025941 Bacteria 754
63 Ga0207689_10360692 3300025942 Bacteria 1208
64 Ga0207641_10181365 3300026088 Bacteria 1929
65 Ga0207676_10278327 3300026095 Bacteria 1518
66 Ga0207674_10377203 3300026116 Bacteria 1371
67 Ga0207675_101937940 3300026118 Bacteria 607
68 Ga0209371_1010359 3300027312 Bacteria 2877
69 Ga0268265_10431009 3300028380 Bacteria 1227
70 Ga0268256_1011109 3300030500 Bacteria 2877
71 Ga0307509_10000415 3300031507 Bacteria 71819
72 Ga0307408_100367377 3300031548 Bacteria 1226
73 Ga0316579_10412738 3300031691 Bacteria 653
74 Ga0316576_10008892 3300031727 Bacteria 6448
75 Ga0316576_10023451 3300031727 Bacteria 4298
76 Ga0316576_10792539 3300031727 Bacteria 682
77 Ga0316578_10021243 3300031728 Bacteria 3601
78 Ga0316578_10147650 3300031728 Bacteria 1416
79 Ga0316578_10155039 3300031728 Bacteria 1380
80 Ga0316578_10373956 3300031728 Bacteria 846
81 Ga0307516_10020471 3300031730 Bacteria 6834
82 Ga0307516_10300537 3300031730 Bacteria 1281
83 Ga0316577_10035860 3300031733 Bacteria 2772
84 Ga0316577_10045192 3300031733 Bacteria 2462
85 Ga0307406_10571409 3300031901 Bacteria 928
86 Ga0307416_100910047 3300032002 Bacteria 980
87 Ga0316583_10014206 3300032133 Bacteria 2872
88 Ga0316583_10287173 3300032133 Bacteria 569
89 Ga0316585_10000101 3300032137 Bacteria 15514
90 Ga0316585_10201708 3300032137 Bacteria 657
91 Ga0316580_10004705 3300032139 Bacteria 3967
92 Ga0316580_10245404 3300032139 Bacteria 553
93 Ga0316593_10223782 3300032168 Bacteria 699
94 Ga0316592_1001383 3300033524 Bacteria 3877
95 Ga0316586_1112178 3300033527 Bacteria 527
96 Ga0316588_1071139 3300033528 Bacteria 855
97 Ga0316596_1019220 3300033541 Bacteria 1733
98 Ga0316574_0001533 3300035398 Bacteria 11015
99 Ga0316574_0006416 3300035398 Bacteria 6359
100 Ga0316574_0112039 3300035398 Bacteria 1749
101 Ga0373937_1537378 3300036401 Unclassified 613
102 Ga0316582_0001191 3300036647 Bacteria 11162
103 Ga0316582_0011530 3300036647 Bacteria 4890
104 Ga0316582_0167502 3300036647 Bacteria 1490
105 Ga0316584_0009596 3300036712 Bacteria 6726
106 Ga0316584_0017147 3300036712 Bacteria 5201
107 Ga0316584_0643375 3300036712 Bacteria 731
108 Ga0439436_0063074 3300041404 Bacteria 1036
109 Ga0439461_0178981 3300041410 Bacteria 561
110 Ga0451807_1882213 3300041486 Unclassified 698
111 Ga0451837_1507669 3300041494 Bacteria 1103
112 Ga0451843_0700656 3300041509 Bacteria 678
113 Ga0451853_2154482 3300041512 Bacteria 622
114 Ga0439441_003853 3300042001 Bacteria 2238
115 Ga0439449_0248879 3300042007 Bacteria 668
116 Ga0439462_0025994 3300042015 Bacteria 1542
117 Ga0450906_021611 3300042145 Bacteria 1150
118 Ga0439434_0013982 3300042435 Bacteria 2386
119 Ga0451577_0007577 3300042876 Bacteria 10646
120 Ga0451577_0152388 3300042876 Bacteria 2080
121 Ga0453684_0464399 3300044712 Bacteria 1407
122 Ga0495582_0669348 3300046473 Bacteria 601
123 Ga0495594_0055062 3300046499 Bacteria 2193
124 Ga0495663_0018828 3300046525 Bacteria 1969
125 Ga0495656_0059767 3300046615 Bacteria 1659
126 Ga0495656_0103259 3300046615 Bacteria 1321
127 Ga0495611_0240505 3300046648 Bacteria 840
128 Ga0495659_0060531 3300046664 Bacteria 1397
129 Ga0495659_0428563 3300046664 Bacteria 573
130 Ga0495670_0628012 3300046691 Bacteria 585
131 Ga0495636_0022639 3300047318 Bacteria 2541
132 Ga0495636_0024190 3300047318 Bacteria 2461
133 Ga0495636_0038419 3300047318 Bacteria 1981
134 Ga0495636_0131709 3300047318 Bacteria 1112
135 Ga0496100_0310642 3300048903 Bacteria 1182
136 Ga0496101_0159144 3300048904 Bacteria 1731
137 Ga0496101_0875745 3300048904 Bacteria 707
138 Ga0496102_0328740 3300048905 Bacteria 1440
139 Ga0496106_0829453 3300048909 Bacteria 733
140 Ga0496107_0663326 3300048910 Bacteria 768
141 Ga0496108_0060207 3300048911 Bacteria 3194
142 Ga0496109_0206789 3300048912 Bacteria 1845
143 Ga0496109_0264768 3300048912 Bacteria 1619
144 Ga0496110_0521793 3300048913 Bacteria 1080
145 Ga0496111_0072945 3300048914 Bacteria 2499
146 Ga0496111_0939706 3300048914 Bacteria 621
147 Ga0496112_0583029 3300048915 Bacteria 1051
148 Ga0496113_0013836 3300048916 Bacteria 5483
149 Ga0496113_0371711 3300048916 Bacteria 1147
150 Ga0496115_0000044 3300048918 Bacteria 115745
151 Ga0496123_0150747 3300048926 Bacteria 1255
152 Ga0496125_0048147 3300048928 Bacteria 3558
153 Ga0496125_0265965 3300048928 Bacteria 1072
154 Ga0496126_0000965 3300048929 Bacteria 49314
155 Ga0501079_1144824 3300049741 Bacteria 613
156 Ga0501080_0003805 3300049742 Bacteria 13335
157 Ga0501044_0906669 3300049823 Bacteria 756
158 nmdc:mga08y16_651290_c1 3300050511 Bacteria 1057
159 Ga0500652_229482 3300053131 Bacteria 743

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2896384573 2896387927 114
2 3300035398 Ga0316574_0006416 Ga0316574_0006416_2951_3319 118
3 iso_pu_bacteria 2599185352 2600195557 121
4 iso_pu_bacteria 2643221723 2644673039 121
5 iso_pu_bacteria 2920822456 2920826414 121
6 iso_pu_bacteria 2513237159 2513998890 122
7 iso_pu_bacteria 2513237159 2514002203 122
8 iso_pu_bacteria 2558860100 2558865628 122
9 iso_pu_bacteria 2582581866 2585397517 122
10 iso_pu_bacteria 2582581866 2585398262 122
11 iso_pu_bacteria 2617270742 2617385821 122
12 iso_pu_bacteria 2643221557 2643804800 122
13 iso_pu_bacteria 2643221610 2644068509 122
14 iso_pu_bacteria 2643221668 2644378893 122
15 iso_pu_bacteria 2643221675 2644419435 122
16 iso_pu_bacteria 2643221680 2644452792 122
17 iso_pu_bacteria 2643221726 2644691565 122
18 iso_pu_bacteria 2802429605 2805932170 122
19 iso_pu_bacteria 2802429634 2806055842 122
20 iso_pu_bacteria 2802429635 2806061290 122
21 iso_pu_bacteria 2802429636 2806065753 122
22 iso_pu_bacteria 2838694306 2838699522 122
23 iso_pu_bacteria 2840764183 2840764194 122
24 iso_pu_bacteria 2842118031 2842124604 122
25 iso_pu_bacteria 2842377471 2842384232 122
26 iso_pu_bacteria 2842384541 2842389634 122
27 iso_pu_bacteria 2842521101 2842524113 122
28 iso_pu_bacteria 2842521101 2842525379 122
29 iso_pu_bacteria 2882456835 2882463545 122
30 iso_pu_bacteria 2958092219 2958093551 122
31 iso_pu_bacteria 2977530762 2977537068 122
32 iso_pu_bacteria 643692032 643692302 122
33 iso_pu_bacteria 8057575449 8057580711 122
34 iso_pu_bacteria 8057874678 8057880331 122
35 iso_pu_bacteria 2881714928 2881715677 123
36 iso_pu_bacteria 2919513703 2919515017 123
37 3300002987 JGI25159J45721_1000010 JGI25159J45721_100001052 125
38 3300003354 JGI25160J50197_1000038 JGI25160J50197_100003852 125
39 3300003374 JGI25161J50226_1001313 JGI25161J50226_10013133 125
40 3300003771 Ga0055526_1003848 Ga0055526_10038483 125
41 3300003775 Ga0055524_1073579 Ga0055524_10735792 125
42 3300003781 Ga0055536_1054760 Ga0055536_10547602 125
43 3300003794 Ga0055531_10014970 Ga0055531_100149702 125
44 3300003794 Ga0055531_10046211 Ga0055531_100462112 125
45 3300004625 Ga0055543_1000098 Ga0055543_100009852 125
46 3300005262 Ga0065165_1000077 Ga0065165_100007795 125
47 3300006195 Ga0075366_10013149 Ga0075366_100131493 125
48 3300006195 Ga0075366_10169443 Ga0075366_101694432 125
49 3300013249 Ga0171463_1018 Ga0171463_101842 125
50 3300015690 Ga0183363_1272 Ga0183363_12729 125
51 3300025208 Ga0209436_100052 Ga0209436_10005222 125
52 3300025284 Ga0209130_1000054 Ga0209130_100005497 125
53 3300025292 Ga0209676_1012644 Ga0209676_10126442 125
54 3300025292 Ga0209676_1030740 Ga0209676_10307402 125
55 3300025294 Ga0209025_1000392 Ga0209025_100039271 125
56 3300025295 Ga0209564_1000189 Ga0209564_100018952 125
57 3300025298 Ga0209050_1004138 Ga0209050_10041382 125
58 3300025299 Ga0209256_1002560 Ga0209256_100256015 125
59 3300025302 Ga0207426_1000127 Ga0207426_100012797 125
60 3300025303 Ga0209051_1046457 Ga0209051_10464572 125
61 3300025304 Ga0209257_1011418 Ga0209257_10114182 125
62 3300025304 Ga0209257_1103667 Ga0209257_11036671 125
63 3300003775 Ga0055524_1001561 Ga0055524_10015616 126
64 3300005345 Ga0070692_10273083 Ga0070692_102730832 126
65 3300005546 Ga0070696_101085444 Ga0070696_1010854442 126
66 3300005546 Ga0070696_101254507 Ga0070696_1012545072 126
67 3300005616 Ga0068852_101018601 Ga0068852_1010186012 126
68 3300009763 Ga0123340_1045276 Ga0123340_10452762 126
69 3300009765 Ga0123341_1147195 Ga0123341_11471951 126
70 3300009766 Ga0123342_1011944 Ga0123342_10119443 126
71 3300010375 Ga0105239_10021048 Ga0105239_100210482 126
72 3300022740 Ga0228710_1023266 Ga0228710_10232661 126
73 3300025299 Ga0209256_1000587 Ga0209256_100058742 126
74 3300026116 Ga0207674_10377203 Ga0207674_103772032 126
75 3300027312 Ga0209371_1010359 Ga0209371_10103592 126
76 3300030500 Ga0268256_1011109 Ga0268256_10111092 126
77 3300031507 Ga0307509_10000415 Ga0307509_1000041558 126
78 3300031548 Ga0307408_100367377 Ga0307408_1003673771 126
79 3300031730 Ga0307516_10300537 Ga0307516_103005372 126
80 3300032002 Ga0307416_100910047 Ga0307416_1009100471 126
81 3300041404 Ga0439436_0063074 Ga0439436_0063074_422_802 126
82 3300041410 Ga0439461_0178981 Ga0439461_0178981_131_511 126
83 3300041486 Ga0451807_1882213 Ga0451807_1882213_235_615 126
84 3300041512 Ga0451853_2154482 Ga0451853_2154482_204_590 126
85 3300042001 Ga0439441_003853 Ga0439441_003853_1573_1953 126
86 3300042007 Ga0439449_0248879 Ga0439449_0248879_206_586 126
87 3300042015 Ga0439462_0025994 Ga0439462_0025994_842_1222 126
88 3300042145 Ga0450906_021611 Ga0450906_021611_171_551 126
89 3300042435 Ga0439434_0013982 Ga0439434_0013982_370_750 126
90 3300042876 Ga0451577_0007577 Ga0451577_0007577_3724_4104 126
91 3300042876 Ga0451577_0152388 Ga0451577_0152388_1496_1882 126
92 3300044712 Ga0453684_0464399 Ga0453684_0464399_589_969 126
93 3300046499 Ga0495594_0055062 Ga0495594_0055062_395_775 126
94 3300046648 Ga0495611_0240505 Ga0495611_0240505_315_695 126
95 3300048928 Ga0496125_0265965 Ga0496125_0265965_139_519 126
96 3300053131 Ga0500652_229482 Ga0500652_229482_307_687 126
97 3300001989 JGI24739J22299_10024360 JGI24739J22299_100243602 127
98 3300001990 JGI24737J22298_10089665 JGI24737J22298_100896651 127
99 3300002067 JGI24735J21928_10000319 JGI24735J21928_100003197 127
100 3300005331 Ga0070670_100134233 Ga0070670_1001342332 127
101 3300005331 Ga0070670_101040880 Ga0070670_1010408802 127
102 3300005354 Ga0070675_100879207 Ga0070675_1008792071 127
103 3300005518 Ga0070699_100468155 Ga0070699_1004681552 127
104 3300005618 Ga0068864_100106283 Ga0068864_1001062832 127
105 3300005719 Ga0068861_100948028 Ga0068861_1009480282 127
106 3300005841 Ga0068863_101163490 Ga0068863_1011634902 127
107 3300009148 Ga0105243_10684713 Ga0105243_106847131 127
108 3300009553 Ga0105249_10003866 Ga0105249_1000386611 127
109 3300009553 Ga0105249_12841009 Ga0105249_128410091 127
110 3300010375 Ga0105239_11012113 Ga0105239_110121132 127
111 3300012477 Ga0157336_1001518 Ga0157336_10015182 127
112 3300012482 Ga0157318_1002912 Ga0157318_10029121 127
113 3300012510 Ga0157316_1001455 Ga0157316_10014552 127
114 3300012512 Ga0157327_1002039 Ga0157327_10020392 127
115 3300013104 Ga0157370_12073906 Ga0157370_120739061 127
116 3300013105 Ga0157369_10486163 Ga0157369_104861632 127
117 3300025904 Ga0207647_10030216 Ga0207647_100302162 127
118 3300025923 Ga0207681_10205269 Ga0207681_102052692 127
119 3300025927 Ga0207687_11735701 Ga0207687_117357012 127
120 3300025931 Ga0207644_11310834 Ga0207644_113108342 127
121 3300025941 Ga0207711_11051996 Ga0207711_110519962 127
122 3300025942 Ga0207689_10360692 Ga0207689_103606922 127
123 3300026088 Ga0207641_10181365 Ga0207641_101813652 127
124 3300026095 Ga0207676_10278327 Ga0207676_102783272 127
125 3300026118 Ga0207675_101937940 Ga0207675_1019379401 127
126 3300028380 Ga0268265_10431009 Ga0268265_104310092 127
127 3300031691 Ga0316579_10412738 Ga0316579_104127381 127
128 3300031727 Ga0316576_10008892 Ga0316576_100088922 127
129 3300031727 Ga0316576_10023451 Ga0316576_100234513 127
130 3300031727 Ga0316576_10792539 Ga0316576_107925391 127
131 3300031728 Ga0316578_10021243 Ga0316578_100212434 127
132 3300031728 Ga0316578_10147650 Ga0316578_101476502 127
133 3300031728 Ga0316578_10155039 Ga0316578_101550392 127
134 3300031728 Ga0316578_10373956 Ga0316578_103739562 127
135 3300031730 Ga0307516_10020471 Ga0307516_100204714 127
136 3300031733 Ga0316577_10035860 Ga0316577_100358603 127
137 3300031733 Ga0316577_10045192 Ga0316577_100451922 127
138 3300031901 Ga0307406_10571409 Ga0307406_105714091 127
139 3300032133 Ga0316583_10014206 Ga0316583_100142063 127
140 3300032133 Ga0316583_10287173 Ga0316583_102871731 127
141 3300032137 Ga0316585_10000101 Ga0316585_100001011 127
142 3300032137 Ga0316585_10201708 Ga0316585_102017081 127
143 3300032139 Ga0316580_10004705 Ga0316580_100047052 127
144 3300032139 Ga0316580_10245404 Ga0316580_102454041 127
145 3300032168 Ga0316593_10223782 Ga0316593_102237822 127
146 3300033524 Ga0316592_1001383 Ga0316592_10013833 127
147 3300033527 Ga0316586_1112178 Ga0316586_11121781 127
148 3300033528 Ga0316588_1071139 Ga0316588_10711392 127
149 3300033541 Ga0316596_1019220 Ga0316596_10192203 127
150 3300035398 Ga0316574_0001533 Ga0316574_0001533_10083_10475 127
151 3300035398 Ga0316574_0112039 Ga0316574_0112039_1338_1724 127
152 3300036401 Ga0373937_1537378 Ga0373937_1537378_68_451 127
153 3300036647 Ga0316582_0001191 Ga0316582_0001191_8354_8746 127
154 3300036647 Ga0316582_0011530 Ga0316582_0011530_2113_2499 127
155 3300036647 Ga0316582_0167502 Ga0316582_0167502_258_641 127
156 3300036712 Ga0316584_0009596 Ga0316584_0009596_6276_6662 127
157 3300036712 Ga0316584_0017147 Ga0316584_0017147_167_553 127
158 3300036712 Ga0316584_0643375 Ga0316584_0643375_134_520 127
159 3300041494 Ga0451837_1507669 Ga0451837_1507669_246_629 127
160 3300041509 Ga0451843_0700656 Ga0451843_0700656_107_490 127
161 3300046473 Ga0495582_0669348 Ga0495582_0669348_140_523 127
162 3300046525 Ga0495663_0018828 Ga0495663_0018828_763_1146 127
163 3300046615 Ga0495656_0059767 Ga0495656_0059767_855_1238 127
164 3300046615 Ga0495656_0103259 Ga0495656_0103259_464_847 127
165 3300046664 Ga0495659_0060531 Ga0495659_0060531_593_976 127
166 3300046664 Ga0495659_0428563 Ga0495659_0428563_173_556 127
167 3300046691 Ga0495670_0628012 Ga0495670_0628012_21_404 127
168 3300047318 Ga0495636_0022639 Ga0495636_0022639_1425_1808 127
169 3300047318 Ga0495636_0024190 Ga0495636_0024190_1748_2131 127
170 3300047318 Ga0495636_0038419 Ga0495636_0038419_1051_1434 127
171 3300047318 Ga0495636_0131709 Ga0495636_0131709_53_436 127
172 3300048903 Ga0496100_0310642 Ga0496100_0310642_280_663 127
173 3300048904 Ga0496101_0159144 Ga0496101_0159144_369_752 127
174 3300048904 Ga0496101_0875745 Ga0496101_0875745_60_443 127
175 3300048905 Ga0496102_0328740 Ga0496102_0328740_660_1043 127
176 3300048909 Ga0496106_0829453 Ga0496106_0829453_38_421 127
177 3300048910 Ga0496107_0663326 Ga0496107_0663326_352_735 127
178 3300048911 Ga0496108_0060207 Ga0496108_0060207_2495_2878 127
179 3300048912 Ga0496109_0206789 Ga0496109_0206789_966_1349 127
180 3300048912 Ga0496109_0264768 Ga0496109_0264768_353_736 127
181 3300048913 Ga0496110_0521793 Ga0496110_0521793_280_663 127
182 3300048914 Ga0496111_0072945 Ga0496111_0072945_1674_2057 127
183 3300048914 Ga0496111_0939706 Ga0496111_0939706_74_457 127
184 3300048915 Ga0496112_0583029 Ga0496112_0583029_571_954 127
185 3300048916 Ga0496113_0013836 Ga0496113_0013836_2144_2527 127
186 3300048916 Ga0496113_0371711 Ga0496113_0371711_274_657 127
187 3300048918 Ga0496115_0000044 Ga0496115_0000044_49838_50221 127
188 3300048926 Ga0496123_0150747 Ga0496123_0150747_71_454 127
189 3300048928 Ga0496125_0048147 Ga0496125_0048147_1315_1698 127
190 3300048929 Ga0496126_0000965 Ga0496126_0000965_33672_34067 127
191 3300049741 Ga0501079_1144824 Ga0501079_1144824_16_402 127
192 3300049742 Ga0501080_0003805 Ga0501080_0003805_8018_8404 127
193 3300049823 Ga0501044_0906669 Ga0501044_0906669_360_743 127
194 3300050511 nmdc:mga08y16_651290_c1 nmdc:mga08y16_651290_c1_353_736 127

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01042

Ribonuc_L-PSP

Endoribonuclease L-PSP

22

140

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
6l8p-assembly1.cif.gz_B crystal structure of rida from antarctic bacterium psychrobacter sp. pamc 21119 0.9675 4 126
3k0t-assembly1.cif.gz_B crystal structure of pspto -psp protein in complex with d-beta-glucose from pseudomonas syringae pv. tomato str. dc3000 0.9657 4 126
5hp7-assembly1.cif.gz_A crystal structures of rida in the apo form 0.963 19 126
3r0p-assembly2.cif.gz_C crystal structure of l-psp putative endoribonuclease from uncultured organism 0.9623 2 126
1xrg-assembly1.cif.gz_C conserved hypothetical protein from clostridium thermocellum cth-2968 0.961 3 125
ID Description Score Start End Superfamily
5hp8A00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.9646 19 126 3.30.1330.40
3k0tB00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.9629 4 126 3.30.1330.40
5hp8A00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.956 19 126 3.30.1330.40
1jd1F00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.9553 2 127 3.30.1330.40
1nq3C00 Alpha Beta;2-Layer Sandwich;60s Ribosomal Protein L30; Chain: A;;RutC-like 0.9526 2 127 3.30.1330.40
ID Description Score Start End GO Terms
AF-A0A7R9L3I5-F1-model_v4 Uncharacterized protein 0.9771 2 126 GO:0005829
GO:0019239
AF-A0A1W9P7R1-F1-model_v4 Reactive intermediate/imine deaminase 0.9768 18 126 GO:0005829
GO:0019239
AF-A0A257NW43-F1-model_v4 Reactive intermediate/imine deaminase 0.9743 2 127 GO:0005829
GO:0019239
AF-A0A257QD92-F1-model_v4 Reactive intermediate/imine deaminase 0.973 2 127 GO:0005829
GO:0019239
AF-A0A3R7SE17-F1-model_v4 RidA family protein 0.9726 2 127 GO:0005829
GO:0019239

Feature Viewer

pLDDT pTM Quality
95.29 0.9 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map