F298222

General Info

Members Datasets Scaffolds Average Seq Length
194 113 388 168

Family's Representative Sequence

Representative Sequence 3300005354|Ga0070675_100721483|Ga0070675_1007214832
Length 180
Sequence LGVSSKSEIECAMAGALIITAEIAPRDLAWLDELRRQHYPAERNRVPAHLTMVHALPPSAEGEARRVLARLGSEPRPRAMIDGLIDLGGGVAFRVVSPDLDRIRRDLAEDFHGLLSASDAGGWRPHVTIQNKVAEREARALLGRLAADFRPRPLAISGLGLHRYLDGPWERLATRSFRGG

Samples

Sample ID Description Type Environment
1 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
2 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
3 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
15 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
20 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
23 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
24 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
25 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
26 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
27 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
28 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
30 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
31 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
32 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
33 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
34 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
35 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
38 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
39 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
40 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
41 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
66 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
67 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
68 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
69 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
70 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
71 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
72 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
73 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
74 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
75 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
76 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
77 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
78 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
79 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
80 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
81 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
82 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
83 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
84 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
85 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
86 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
87 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
88 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
89 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
90 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
91 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
92 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
93 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
94 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
95 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
96 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
97 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
98 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
99 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
100 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
101 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
102 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
103 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
104 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
105 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
106 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
107 3300049664 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_A_2_drought Metagenome Rhizosphere
108 3300049673 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I13_A_3_drought Metagenome Rhizosphere
109 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
110 3300049768 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_B_4_drought Metagenome Rhizosphere
111 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
112 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
113 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.58
Nodule 0
Rhizoplane 5.15
Rhizosphere 91.75
Stem 0
Stem Tuber 0
Unclassified 6.7

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070675_100721483 3300005354 Bacteria 908
2 MBSR1b_contig_5328775 2162886012 Bacteria 1094
3 JGI24737J22298_10000694 3300001990 Bacteria 11827
4 rootH1_10144439 3300003323 Bacteria 1211
5 Ga0065712_10198298 3300005290 Bacteria 1119
6 Ga0070658_10012509 3300005327 Bacteria 6809
7 Ga0070658_10023579 3300005327 Bacteria 4938
8 Ga0070658_10024646 3300005327 Bacteria 4824
9 Ga0070658_10039614 3300005327 Bacteria 3801
10 Ga0070658_11256169 3300005327 Unclassified 644
11 Ga0070670_100055811 3300005331 Bacteria 3390
12 Ga0070670_100201438 3300005331 Bacteria 1730
13 Ga0068868_100530133 3300005338 Bacteria 1035
14 Ga0070660_100862943 3300005339 Unclassified 762
15 Ga0070661_100047342 3300005344 Bacteria 3146
16 Ga0070661_100370189 3300005344 Bacteria 1128
17 Ga0070675_100086128 3300005354 Bacteria 2625
18 Ga0070671_100001894 3300005355 Bacteria 15993
19 Ga0070673_100097025 3300005364 Bacteria 2420
20 Ga0070673_100243995 3300005364 Bacteria 1563
21 Ga0070659_100031766 3300005366 Bacteria 4091
22 Ga0070659_100177408 3300005366 Bacteria 1747
23 Ga0070678_100047608 3300005456 Bacteria 3082
24 Ga0070662_100086137 3300005457 Bacteria 2349
25 Ga0070679_100979969 3300005530 Bacteria 789
26 Ga0070672_100040917 3300005543 Bacteria 3560
27 Ga0068855_100189905 3300005563 Bacteria 2318
28 Ga0070664_100074596 3300005564 Bacteria 2912
29 Ga0070664_100081509 3300005564 Bacteria 2789
30 Ga0068857_100026383 3300005577 Bacteria 5121
31 Ga0068856_100021696 3300005614 Bacteria 6241
32 Ga0068856_100169729 3300005614 Bacteria 2193
33 Ga0068856_100647112 3300005614 Bacteria 1078
34 Ga0068852_101203082 3300005616 Bacteria 779
35 Ga0068864_100097289 3300005618 Bacteria 2606
36 Ga0068851_10222065 3300005834 Bacteria 1062
37 Ga0068863_100003049 3300005841 Bacteria 16554
38 Ga0068862_100762815 3300005844 Bacteria 942
39 Ga0075366_10220001 3300006195 Bacteria 1157
40 Ga0097621_100388732 3300006237 Bacteria 1247
41 Ga0075370_10177716 3300006353 Bacteria 1252
42 Ga0068871_100044657 3300006358 Bacteria 3565
43 Ga0105243_10844943 3300009148 Bacteria 906
44 Ga0105241_11455656 3300009174 Bacteria 658
45 Ga0105248_10046949 3300009177 Bacteria 4842
46 Ga0105246_10096731 3300011119 Bacteria 2141
47 Ga0157370_10000630 3300013104 Bacteria 43948
48 Ga0157370_10010423 3300013104 Bacteria 9796
49 Ga0157369_10060103 3300013105 Bacteria 4098
50 Ga0157369_10709760 3300013105 Unclassified 1035
51 Ga0157374_10225099 3300013296 Bacteria 1842
52 Ga0157374_10244889 3300013296 Bacteria 1763
53 Ga0157372_10335826 3300013307 Bacteria 1760
54 Ga0157372_10671272 3300013307 Bacteria 1206
55 Ga0157375_10145761 3300013308 Bacteria 2499
56 Ga0157375_10380100 3300013308 Bacteria 1579
57 Ga0157375_11176019 3300013308 Bacteria 899
58 Ga0157377_10278596 3300014745 Bacteria 1095
59 Ga0209676_1000070 3300025292 Bacteria 312074
60 Ga0207680_10059832 3300025903 Bacteria 2316
61 Ga0207680_10157839 3300025903 Bacteria 1518
62 Ga0207647_10007644 3300025904 Bacteria 7789
63 Ga0207705_10025242 3300025909 Bacteria 4243
64 Ga0207705_10027257 3300025909 Bacteria 4074
65 Ga0207705_10063040 3300025909 Bacteria 2678
66 Ga0207657_10044020 3300025919 Bacteria 3927
67 Ga0207657_10116481 3300025919 Bacteria 2202
68 Ga0207649_10429698 3300025920 Bacteria 993
69 Ga0207650_10102607 3300025925 Bacteria 2204
70 Ga0207650_10146392 3300025925 Bacteria 1861
71 Ga0207650_10670106 3300025925 Unclassified 875
72 Ga0207659_10104291 3300025926 Bacteria 2144
73 Ga0207644_10000978 3300025931 Bacteria 18260
74 Ga0207644_10603464 3300025931 Bacteria 911
75 Ga0207690_10094785 3300025932 Bacteria 2119
76 Ga0207690_10288742 3300025932 Bacteria 1280
77 Ga0207691_10104991 3300025940 Bacteria 2517
78 Ga0207661_10148894 3300025944 Bacteria 2022
79 Ga0207679_10081511 3300025945 Bacteria 2474
80 Ga0207679_10272207 3300025945 Bacteria 1449
81 Ga0207667_10158469 3300025949 Bacteria 2329
82 Ga0207651_10280883 3300025960 Bacteria 1376
83 Ga0207651_10612154 3300025960 Bacteria 953
84 Ga0207668_11031626 3300025972 Unclassified 736
85 Ga0207678_10007099 3300026067 Bacteria 9933
86 Ga0207678_11216325 3300026067 Unclassified 667
87 Ga0207702_11106639 3300026078 Bacteria 786
88 Ga0207702_11295374 3300026078 Bacteria 723
89 Ga0207641_10014743 3300026088 Bacteria 6407
90 Ga0207676_10145363 3300026095 Bacteria 2036
91 Ga0207676_10146914 3300026095 Bacteria 2026
92 Ga0207676_10156786 3300026095 Bacteria 1968
93 Ga0207674_10000139 3300026116 Bacteria 84273
94 Ga0207683_10009677 3300026121 Bacteria 8216
95 Ga0207698_10336256 3300026142 Bacteria 1420
96 Ga0268265_10282928 3300028380 Bacteria 1485
97 Ga0307408_100313666 3300031548 Bacteria 1318
98 Ga0307408_100493426 3300031548 Bacteria 1070
99 Ga0307413_10126829 3300031824 Bacteria 1739
100 Ga0307410_10293371 3300031852 Bacteria 1280
101 Ga0307406_10399869 3300031901 Bacteria 1088
102 Ga0307407_10364901 3300031903 Bacteria 1026
103 Ga0307412_10003564 3300031911 Bacteria 8644
104 Ga0307409_100018648 3300031995 Bacteria 4673
105 Ga0307409_100271270 3300031995 Bacteria 1562
106 Ga0307416_100177610 3300032002 Bacteria 1991
107 Ga0307416_102054133 3300032002 Bacteria 674
108 Ga0307411_11063452 3300032005 Bacteria 727
109 Ga0373930_0031984 3300034816 Bacteria 1087
110 Ga0395899_0000514 3300037312 Bacteria 42939
111 Ga0395899_0045506 3300037312 Bacteria 3270
112 Ga0395899_0238560 3300037312 Bacteria 1252
113 Ga0395900_0000510 3300037418 Bacteria 54812
114 Ga0395900_0001721 3300037418 Bacteria 25276
115 Ga0395900_0102704 3300037418 Bacteria 2937
116 Ga0395900_0131593 3300037418 Bacteria 2564
117 Ga0395900_0145376 3300037418 Bacteria 2425
118 Ga0395900_0212314 3300037418 Bacteria 1954
119 Ga0395900_0335525 3300037418 Bacteria 1489
120 Ga0395900_0357313 3300037418 Bacteria 1433
121 Ga0395898_0000021 3300037466 Bacteria 393971
122 Ga0395898_0091151 3300037466 Bacteria 2933
123 Ga0395898_0231715 3300037466 Bacteria 1761
124 Ga0395905_0000006 3300037471 Bacteria 549428
125 Ga0395905_0002287 3300037471 Bacteria 21496
126 Ga0395905_0003876 3300037471 Bacteria 15783
127 Ga0395905_0007539 3300037471 Bacteria 10819
128 Ga0395905_0012327 3300037471 Bacteria 8229
129 Ga0395905_0122088 3300037471 Bacteria 2449
130 Ga0395905_0185272 3300037471 Bacteria 1954
131 Ga0395905_0667639 3300037471 Bacteria 942
132 Ga0395905_1133477 3300037471 Unclassified 685
133 Ga0395901_0001936 3300038443 Bacteria 21345
134 Ga0395901_0020131 3300038443 Bacteria 6828
135 Ga0395901_0034649 3300038443 Bacteria 5214
136 Ga0395901_0127376 3300038443 Bacteria 2676
137 Ga0395901_0209588 3300038443 Bacteria 2040
138 Ga0395901_0270827 3300038443 Bacteria 1766
139 Ga0395901_0413144 3300038443 Unclassified 1385
140 Ga0395901_0421418 3300038443 Bacteria 1369
141 Ga0466965_0099157 3300044683 Bacteria 1489
142 Ga0466966_0020946 3300044684 Bacteria 4298
143 Ga0466966_0137353 3300044684 Bacteria 1494
144 Ga0466961_0038125 3300044693 Bacteria 3083
145 Ga0466961_0074352 3300044693 Bacteria 2155
146 Ga0466963_0133439 3300044694 Bacteria 1717
147 Ga0466963_0321134 3300044694 Bacteria 1090
148 Ga0466963_0352562 3300044694 Bacteria 1036
149 Ga0466963_0500894 3300044694 Bacteria 857
150 Ga0466964_0062447 3300044706 Bacteria 1553
151 Ga0466964_0670395 3300044706 Unclassified 575
152 Ga0466971_0033995 3300044719 Bacteria 2284
153 Ga0466968_0511001 3300044735 Unclassified 599
154 Ga0466970_0168997 3300044765 Bacteria 1211
155 Ga0466957_0066067 3300044842 Bacteria 2229
156 Ga0466957_0359487 3300044842 Bacteria 989
157 Ga0466957_0467862 3300044842 Unclassified 871
158 Ga0466960_0360861 3300044901 Bacteria 830
159 Ga0466959_0153569 3300045049 Bacteria 1621
160 Ga0466959_0205398 3300045049 Bacteria 1370
161 Ga0466959_0230624 3300045049 Bacteria 1282
162 Ga0466958_0019048 3300045836 Bacteria 3991
163 Ga0466958_0053225 3300045836 Bacteria 2454
164 Ga0466958_0134112 3300045836 Bacteria 1556
165 Ga0466958_0178946 3300045836 Bacteria 1345
166 Ga0466967_0065341 3300045976 Bacteria 3238
167 Ga0466967_0066854 3300045976 Bacteria 3204
168 Ga0466967_0227671 3300045976 Bacteria 1774
169 Ga0466967_0852549 3300045976 Bacteria 905
170 Ga0495598_0000266 3300046537 Bacteria 9412
171 Ga0495621_0000031 3300046539 Bacteria 27353
172 Ga0495633_0162200 3300046558 Unclassified 1031
173 Ga0495670_0000562 3300046691 Bacteria 17692
174 Ga0495677_0001413 3300047445 Bacteria 9643
175 Ga0496102_0335928 3300048905 Unclassified 1423
176 Ga0496108_0141430 3300048911 Bacteria 2073
177 Ga0496109_0017479 3300048912 Bacteria 6289
178 Ga0496109_0116338 3300048912 Bacteria 2488
179 Ga0496110_0052365 3300048913 Bacteria 3587
180 Ga0496111_0694852 3300048914 Bacteria 740
181 Ga0496112_0058910 3300048915 Bacteria 3783
182 Ga0496112_0063852 3300048915 Bacteria 3632
183 Ga0496113_0067919 3300048916 Bacteria 2704
184 Ga0496114_0413367 3300048917 Bacteria 1195
185 Ga0501223_066780 3300049663 Bacteria 707
186 Ga0501224_000684 3300049664 Bacteria 4237
187 Ga0501240_011221 3300049673 Bacteria 1204
188 Ga0501234_040400 3300049707 Bacteria 763
189 Ga0501271_003788 3300049768 Bacteria 1410
190 nmdc:mga04h51_332476_c1 3300050495 Bacteria 625
191 Ga0500627_0000012 3300053158 Bacteria 140613
192 Ga0466962_0001940 3300061719 Bacteria 9748
193 Ga0466962_0007104 3300061719 Bacteria 5365
194 Ga0466962_0013115 3300061719 Bacteria 3988
195 Ga0070675_100721483
196 MBSR1b_contig_5328775
197 JGI24737J22298_10000694
198 rootH1_10144439
199 Ga0065712_10198298
200 Ga0070658_10012509
201 Ga0070658_10023579
202 Ga0070658_10024646
203 Ga0070658_10039614
204 Ga0070658_11256169
205 Ga0070670_100055811
206 Ga0070670_100201438
207 Ga0068868_100530133
208 Ga0070660_100862943
209 Ga0070661_100047342
210 Ga0070661_100370189
211 Ga0070675_100086128
212 Ga0070671_100001894
213 Ga0070673_100097025
214 Ga0070673_100243995
215 Ga0070659_100031766
216 Ga0070659_100177408
217 Ga0070678_100047608
218 Ga0070662_100086137
219 Ga0070679_100979969
220 Ga0070672_100040917
221 Ga0068855_100189905
222 Ga0070664_100074596
223 Ga0070664_100081509
224 Ga0068857_100026383
225 Ga0068856_100021696
226 Ga0068856_100169729
227 Ga0068856_100647112
228 Ga0068852_101203082
229 Ga0068864_100097289
230 Ga0068851_10222065
231 Ga0068863_100003049
232 Ga0068862_100762815
233 Ga0075366_10220001
234 Ga0097621_100388732
235 Ga0075370_10177716
236 Ga0068871_100044657
237 Ga0105243_10844943
238 Ga0105241_11455656
239 Ga0105248_10046949
240 Ga0105246_10096731
241 Ga0157370_10000630
242 Ga0157370_10010423
243 Ga0157369_10060103
244 Ga0157369_10709760
245 Ga0157374_10225099
246 Ga0157374_10244889
247 Ga0157372_10335826
248 Ga0157372_10671272
249 Ga0157375_10145761
250 Ga0157375_10380100
251 Ga0157375_11176019
252 Ga0157377_10278596
253 Ga0209676_1000070
254 Ga0207680_10059832
255 Ga0207680_10157839
256 Ga0207647_10007644
257 Ga0207705_10025242
258 Ga0207705_10027257
259 Ga0207705_10063040
260 Ga0207657_10044020
261 Ga0207657_10116481
262 Ga0207649_10429698
263 Ga0207650_10102607
264 Ga0207650_10146392
265 Ga0207650_10670106
266 Ga0207659_10104291
267 Ga0207644_10000978
268 Ga0207644_10603464
269 Ga0207690_10094785
270 Ga0207690_10288742
271 Ga0207691_10104991
272 Ga0207661_10148894
273 Ga0207679_10081511
274 Ga0207679_10272207
275 Ga0207667_10158469
276 Ga0207651_10280883
277 Ga0207651_10612154
278 Ga0207668_11031626
279 Ga0207678_10007099
280 Ga0207678_11216325
281 Ga0207702_11106639
282 Ga0207702_11295374
283 Ga0207641_10014743
284 Ga0207676_10145363
285 Ga0207676_10146914
286 Ga0207676_10156786
287 Ga0207674_10000139
288 Ga0207683_10009677
289 Ga0207698_10336256
290 Ga0268265_10282928
291 Ga0307408_100313666
292 Ga0307408_100493426
293 Ga0307413_10126829
294 Ga0307410_10293371
295 Ga0307406_10399869
296 Ga0307407_10364901
297 Ga0307412_10003564
298 Ga0307409_100018648
299 Ga0307409_100271270
300 Ga0307416_100177610
301 Ga0307416_102054133
302 Ga0307411_11063452
303 Ga0373930_0031984
304 Ga0395899_0000514
305 Ga0395899_0045506
306 Ga0395899_0238560
307 Ga0395900_0000510
308 Ga0395900_0001721
309 Ga0395900_0102704
310 Ga0395900_0131593
311 Ga0395900_0145376
312 Ga0395900_0212314
313 Ga0395900_0335525
314 Ga0395900_0357313
315 Ga0395898_0000021
316 Ga0395898_0091151
317 Ga0395898_0231715
318 Ga0395905_0000006
319 Ga0395905_0002287
320 Ga0395905_0003876
321 Ga0395905_0007539
322 Ga0395905_0012327
323 Ga0395905_0122088
324 Ga0395905_0185272
325 Ga0395905_0667639
326 Ga0395905_1133477
327 Ga0395901_0001936
328 Ga0395901_0020131
329 Ga0395901_0034649
330 Ga0395901_0127376
331 Ga0395901_0209588
332 Ga0395901_0270827
333 Ga0395901_0413144
334 Ga0395901_0421418
335 Ga0466965_0099157
336 Ga0466966_0020946
337 Ga0466966_0137353
338 Ga0466961_0038125
339 Ga0466961_0074352
340 Ga0466963_0133439
341 Ga0466963_0321134
342 Ga0466963_0352562
343 Ga0466963_0500894
344 Ga0466964_0062447
345 Ga0466964_0670395
346 Ga0466971_0033995
347 Ga0466968_0511001
348 Ga0466970_0168997
349 Ga0466957_0066067
350 Ga0466957_0359487
351 Ga0466957_0467862
352 Ga0466960_0360861
353 Ga0466959_0153569
354 Ga0466959_0205398
355 Ga0466959_0230624
356 Ga0466958_0019048
357 Ga0466958_0053225
358 Ga0466958_0134112
359 Ga0466958_0178946
360 Ga0466967_0065341
361 Ga0466967_0066854
362 Ga0466967_0227671
363 Ga0466967_0852549
364 Ga0495598_0000266
365 Ga0495621_0000031
366 Ga0495633_0162200
367 Ga0495670_0000562
368 Ga0495677_0001413
369 Ga0496102_0335928
370 Ga0496108_0141430
371 Ga0496109_0017479
372 Ga0496109_0116338
373 Ga0496110_0052365
374 Ga0496111_0694852
375 Ga0496112_0058910
376 Ga0496112_0063852
377 Ga0496113_0067919
378 Ga0496114_0413367
379 Ga0501223_066780
380 Ga0501224_000684
381 Ga0501240_011221
382 Ga0501234_040400
383 Ga0501271_003788
384 nmdc:mga04h51_332476_c1
385 Ga0500627_0000012
386 Ga0466962_0001940
387 Ga0466962_0007104
388 Ga0466962_0013115

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13563

2_5_RNA_ligase2

2'-5' RNA ligase superfamily

23

168

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
2d4g-assembly1.cif.gz_B structure of yjcg protein, a putative 2'-5' rna ligase from bacillus subtilis 0.7779 5 166
1jh6-assembly1.cif.gz_A semi-reduced cyclic nucleotide phosphodiesterase from arabidopsis thaliana 0.7501 1 166
1jh6-assembly1.cif.gz_A semi-reduced cyclic nucleotide phosphodiesterase from arabidopsis thaliana 0.7383 1 166
1fsi-assembly3.cif.gz_C crystal structure of cyclic nucleotide phosphodiesterase of appr>p from arabidopsis thaliana 0.7273 1 166
1vgj-assembly1.cif.gz_A crystal structure of 2'-5' rna ligase from pyrococcus horikoshii 0.7166 4 165
ID Description Score Start End Superfamily
af_Q96NE9_230_330_2.30.29.30 Mainly Beta;Roll;PH-domain like;Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.7715 141 164 2.30.29.30
2d4gB00 Alpha Beta;Alpha-Beta Complex;Cyclic Phosphodiesterase; Chain: A,;Cyclic phosphodiesterase 0.7696 5 166 3.90.1140.10
af_A0A0R0J7K3_2_269_2.120.10.80 Mainly Beta;6 Propeller;Neuraminidase;Kelch-type beta propeller 0.7572 144 166 2.120.10.80
2d4gB00 Alpha Beta;Alpha-Beta Complex;Cyclic Phosphodiesterase; Chain: A,;Cyclic phosphodiesterase 0.7533 5 166 3.90.1140.10
af_Q6H5G6_47_215_3.90.1140.10 Alpha Beta;Alpha-Beta Complex;Cyclic Phosphodiesterase; Chain: A,;Cyclic phosphodiesterase 0.7365 6 143 3.90.1140.10
ID Description Score Start End GO Terms
AF-A0A7G9SFR5-F1-model_v4 2'-5' RNA ligase family protein 0.9958 1 168 GO:0016874
AF-X5CA95-F1-model_v4 2'-5' RNA ligase family protein 0.9928 8 167
AF-A0A7W6LPA7-F1-model_v4 2'-5' RNA ligase family protein 0.9927 2 167
AF-A0A846M5D6-F1-model_v4 2'-5' RNA ligase family protein 0.9926 8 167
AF-A0A3S0R374-F1-model_v4 2'-5' RNA ligase family protein 0.9899 3 166 GO:0016874

Map