F297892

General Info

Members Datasets Scaffolds Average Seq Length
193 161 178 303

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2738541307|2738883766
Length 357
Sequence RLPTSHALRALHALPALRGGLLALLAAALFGISTPLVQRAGEGLGAFTTAALLYAGAACMGAWLRRPVEREAAVRRADLKRLCCMALFGAVVGPVALAWGLQHTSGTSASLMLALEALFTAVLARTLYREVMDRRVAAAMLLLLAGGMVLVVDRGLSGGVQLLGLLAVLAATAAWGIDNTLSRALAERDPGQVVLGKSALGAGATLVLALLAGEPLPHAPAALVLWVIGACGYGLSLRLYLLAQRAFGAARTGSVFAFAPFIGALVAIGLGERALSAGMAVGGALMLAGVVLHLAESHGHAHDHELMEHEHAHRHDDGHHDHSHDPMPAGEHSHAHRHLPLRHAHAHVPDAHHAHTH

Samples

Sample ID Description Type Environment
1 2643221611 Acidovorax sp. Root219 Isolate Unclassified
2 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
3 2643221654 Rhizobacter sp. Root404 Isolate Unclassified
4 2738541307 Variovorax sp. GV008 Isolate Unclassified
5 2816332133 Acidovorax radicis 2721A Isolate Unclassified
6 2885198086 Variovorax sp. 679 Isolate Unclassified
7 2885211737 Variovorax sp. 553 Isolate Unclassified
8 2899924645 Variovorax sp. 369 Isolate Unclassified
9 2928037797 Variovorax sp. 1126 Isolate Unclassified
10 2928044640 Variovorax sp. 1128 Isolate Unclassified
11 2928051484 Variovorax sp. 1133 Isolate Unclassified
12 2928064002 Variovorax sp. 1140 Isolate Rhizosphere
13 2928070936 Variovorax gossypii 1167 Isolate Unclassified
14 2928084124 Variovorax paradoxus 1218 Isolate Unclassified
15 2945984333 Variovorax sp. W2I14 Isolate Rhizosphere
16 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
17 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
18 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
19 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
20 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
21 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
22 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
23 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
24 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
25 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
26 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
27 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
28 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
29 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
30 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
31 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
32 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
33 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
34 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
35 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
36 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
37 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
38 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
39 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
40 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
41 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
42 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
43 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
44 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
45 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
46 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
47 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
48 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
49 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
50 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
51 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
52 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
53 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
54 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
55 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
56 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
57 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
58 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
59 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
60 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
61 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
62 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
63 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
64 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
65 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
66 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
67 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
68 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
69 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
70 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
71 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
72 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
77 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
78 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
79 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
80 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
81 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
106 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
107 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
108 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
109 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
110 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
111 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
112 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
113 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
114 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
115 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
116 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
117 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
118 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
119 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
120 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
121 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
122 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
123 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
124 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
125 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
126 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
127 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
128 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
129 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
130 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
131 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
132 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
133 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
134 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
135 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
136 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
137 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
138 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
139 3300049514 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_B_5_drought Metagenome Rhizosphere
140 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
141 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
142 3300049706 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_B_2_control Metagenome Rhizosphere
143 3300049759 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_A_4_drought Metagenome Rhizosphere
144 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
145 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
146 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
147 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
148 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
149 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
150 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
151 3300053110 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 endosphere Metagenome Endosphere
152 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
153 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
154 3300053128 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 endosphere Metagenome Endosphere
155 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
156 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
157 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
158 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
159 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
160 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
161 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.71
Metatranscriptomes 0.52
Isolates 7.77

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.69
Nodule 0
Rhizoplane 2.59
Rhizosphere 63.21
Stem 0
Stem Tuber 0
Unclassified 14.51

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000577 3300003187 Bacteria 32678
2 rootH1_10042419 3300003316 Bacteria 1591
3 rootL2_10277552 3300003322 Bacteria 1513
4 Ga0006562J51391_1051199 3300003578 Bacteria 4330
5 Ga0055535_1000544 3300003761 Bacteria 32432
6 Ga0055542_1000004 3300003762 Bacteria 553532
7 Ga0055537_1001294 3300003773 Bacteria 10343
8 Ga0055534_1003545 3300003784 Bacteria 4872
9 Ga0055528_1002304 3300003790 Bacteria 10343
10 Ga0070690_100040230 3300005330 Bacteria 2956
11 Ga0070670_100026077 3300005331 Bacteria 5030
12 Ga0070677_10024727 3300005333 Bacteria 2237
13 Ga0068868_100113307 3300005338 Bacteria 2205
14 Ga0070689_100005963 3300005340 Bacteria 8384
15 Ga0070669_100137629 3300005353 Bacteria 1879
16 Ga0070675_100148287 3300005354 Bacteria 2010
17 Ga0070671_100094217 3300005355 Bacteria 2510
18 Ga0070674_100049170 3300005356 Bacteria 2898
19 Ga0070673_100001776 3300005364 Bacteria 12853
20 Ga0070673_100085139 3300005364 Bacteria 2573
21 Ga0070714_100326543 3300005435 Bacteria 1436
22 Ga0070700_100047535 3300005441 Bacteria 2656
23 Ga0070700_100056750 3300005441 Unclassified 2456
24 Ga0070678_100005370 3300005456 Bacteria 7392
25 Ga0068867_100028675 3300005459 Bacteria 4008
26 Ga0068867_100175371 3300005459 Bacteria 1701
27 Ga0068867_100184075 3300005459 Bacteria 1663
28 Ga0070706_100001200 3300005467 Bacteria 27738
29 Ga0070706_100106030 3300005467 Bacteria 2615
30 Ga0070707_100166292 3300005468 Bacteria 2150
31 Ga0070698_100037535 3300005471 Bacteria 4995
32 Ga0070672_100007591 3300005543 Bacteria 7373
33 Ga0070672_100307862 3300005543 Bacteria 1344
34 Ga0070664_100307276 3300005564 Bacteria 1434
35 Ga0068859_100039732 3300005617 Bacteria 4721
36 Ga0068859_100240150 3300005617 Bacteria 1901
37 Ga0068864_100029544 3300005618 Bacteria 4644
38 Ga0068864_100039731 3300005618 Bacteria 4021
39 Ga0068861_100016190 3300005719 Bacteria 5271
40 Ga0068861_100024057 3300005719 Bacteria 4401
41 Ga0068870_10119269 3300005840 Unclassified 1517
42 Ga0068863_100226053 3300005841 Bacteria 1804
43 Ga0068860_100292282 3300005843 Unclassified 1595
44 Ga0068862_100063449 3300005844 Bacteria 3179
45 Ga0075362_10048246 3300006177 Bacteria 1900
46 Ga0075366_10033551 3300006195 Bacteria 3024
47 Ga0097621_100013441 3300006237 Bacteria 6102
48 Ga0075370_10022890 3300006353 Bacteria 3436
49 Ga0068871_100009178 3300006358 Bacteria 7150
50 Ga0068865_100105290 3300006881 Bacteria 2072
51 Ga0068865_100120407 3300006881 Bacteria 1950
52 Ga0097620_100039735 3300006931 Bacteria 4721
53 Ga0097620_100240159 3300006931 Bacteria 1901
54 Ga0105240_10289936 3300009093 Bacteria 1877
55 Ga0105242_10024674 3300009176 Bacteria 4751
56 Ga0105248_10021246 3300009177 Bacteria 7192
57 Ga0105248_10064961 3300009177 Bacteria 4096
58 Ga0105246_10213623 3300011119 Bacteria 1507
59 Ga0157373_10003398 3300013100 Bacteria 12042
60 Ga0157374_10152510 3300013296 Bacteria 2247
61 Ga0157378_10042909 3300013297 Bacteria 4016
62 Ga0157378_10305148 3300013297 Bacteria 1542
63 Ga0157380_10057499 3300014326 Bacteria 3098
64 Ga0157380_10092732 3300014326 Bacteria 2496
65 Ga0182008_10009578 3300014497 Bacteria 5218
66 Ga0157376_10135428 3300014969 Bacteria 2204
67 Ga0182006_1007168 3300015261 Bacteria 5125
68 Ga0182007_10029078 3300015262 Bacteria 1894
69 Ga0163161_10013045 3300017792 Bacteria 5775
70 Ga0213872_10000003 3300021361 Bacteria 366948
71 Ga0213872_10004014 3300021361 Bacteria 7939
72 Ga0209672_101952 3300025228 Bacteria 5810
73 Ga0209147_101009 3300025229 Bacteria 12171
74 Ga0209258_100022 3300025242 Bacteria 553584
75 Ga0209148_1000034 3300025254 Bacteria 553584
76 Ga0209129_1005149 3300025258 Bacteria 4768
77 Ga0209565_1000915 3300025263 Bacteria 15874
78 Ga0209673_1003037 3300025273 Bacteria 10395
79 Ga0209675_1002149 3300025291 Bacteria 10395
80 Ga0209025_1000432 3300025294 Bacteria 82875
81 Ga0209051_1009036 3300025303 Bacteria 5188
82 Ga0207682_10012824 3300025893 Bacteria 3269
83 Ga0207684_10002095 3300025910 Bacteria 20445
84 Ga0207649_10000395 3300025920 Bacteria 32779
85 Ga0207681_10010405 3300025923 Bacteria 5692
86 Ga0207681_10112780 3300025923 Bacteria 1981
87 Ga0207650_10013751 3300025925 Bacteria 5612
88 Ga0207659_10149993 3300025926 Bacteria 1820
89 Ga0207686_10016330 3300025934 Bacteria 4167
90 Ga0207670_10025513 3300025936 Bacteria 3711
91 Ga0207669_10031367 3300025937 Bacteria 2968
92 Ga0207704_10022653 3300025938 Bacteria 3371
93 Ga0207691_10067360 3300025940 Bacteria 3237
94 Ga0207691_10103240 3300025940 Bacteria 2542
95 Ga0207711_10060537 3300025941 Bacteria 3263
96 Ga0207711_10221307 3300025941 Unclassified 1731
97 Ga0207679_10000171 3300025945 Bacteria 53317
98 Ga0207668_10041714 3300025972 Bacteria 3104
99 Ga0207677_10042153 3300026023 Bacteria 3024
100 Ga0207678_10047823 3300026067 Bacteria 3699
101 Ga0207708_10106125 3300026075 Bacteria 2178
102 Ga0207648_10007765 3300026089 Bacteria 10478
103 Ga0207648_10036177 3300026089 Bacteria 4349
104 Ga0207648_10162497 3300026089 Bacteria 1972
105 Ga0207676_10032066 3300026095 Bacteria 3957
106 Ga0207675_100004162 3300026118 Bacteria 13999
107 Ga0207675_100013979 3300026118 Bacteria 7485
108 Ga0207683_10016796 3300026121 Bacteria 6230
109 Ga0268266_10154843 3300028379 Bacteria 2069
110 Ga0268265_10037108 3300028380 Bacteria 3574
111 Ga0307515_10001570 3300028794 Bacteria 51012
112 Ga0307513_10000004 3300031456 Bacteria 558931
113 Ga0307513_10000811 3300031456 Bacteria 45568
114 Ga0307509_10024217 3300031507 Bacteria 6801
115 Ga0307408_100059073 3300031548 Bacteria 2790
116 Ga0307508_10000030 3300031616 Bacteria 165616
117 Ga0307516_10000018 3300031730 Bacteria 200845
118 Ga0307516_10003087 3300031730 Bacteria 21682
119 Ga0307516_10081170 3300031730 Bacteria 3086
120 Ga0307405_10107444 3300031731 Bacteria 1884
121 Ga0307405_10194691 3300031731 Bacteria 1467
122 Ga0307410_10065912 3300031852 Bacteria 2493
123 Ga0307407_10118026 3300031903 Bacteria 1677
124 Ga0307412_10016038 3300031911 Bacteria 4453
125 Ga0307412_10202527 3300031911 Bacteria 1508
126 Ga0307416_100001052 3300032002 Bacteria 14703
127 Ga0307415_100153067 3300032126 Bacteria 1777
128 Ga0395900_0000063 3300037418 Bacteria 201374
129 Ga0395898_0064199 3300037466 Bacteria 3561
130 Ga0436361_0499504 3300039447 Bacteria 9473
131 Ga0436361_1061851 3300039447 Bacteria 60009
132 Ga0451577_0023857 3300042876 Bacteria 5572
133 Ga0453684_0005623 3300044712 Bacteria 24645
134 Ga0451576_0331647 3300045051 Bacteria 1592
135 Ga0495585_0015542 3300046492 Bacteria 4424
136 Ga0495616_0000722 3300046513 Bacteria 24406
137 Ga0495620_0027771 3300046515 Bacteria 2643
138 Ga0495656_0037513 3300046615 Bacteria 2002
139 Ga0495658_0002773 3300046683 Bacteria 8793
140 Ga0495669_0075004 3300046684 Bacteria 1547
141 Ga0495670_0173263 3300046691 Bacteria 1137
142 Ga0495671_0008716 3300046692 Bacteria 5696
143 Ga0495671_0059540 3300046692 Bacteria 1887
144 Ga0495614_0012057 3300048089 Bacteria 3796
145 Ga0496108_0153462 3300048911 Bacteria 1988
146 Ga0496109_0274901 3300048912 Bacteria 1587
147 Ga0496112_0004080 3300048915 Bacteria 12262
148 Ga0496112_0299028 3300048915 Unclassified 1555
149 Ga0496113_0094251 3300048916 Bacteria 2313
150 Ga0496118_0026318 3300048921 Bacteria 4959
151 Ga0496123_0079411 3300048926 Bacteria 2005
152 Ga0496123_0093123 3300048926 Bacteria 1781
153 Ga0496125_0016302 3300048928 Bacteria 7140
154 Ga0501291_002016 3300049514 Bacteria 2392
155 Ga0501235_007472 3300049669 Bacteria 2380
156 Ga0501249_019276 3300049679 Bacteria 1480
157 Ga0501229_000037 3300049706 Bacteria 13645
158 Ga0501229_000649 3300049706 Bacteria 3911
159 Ga0501262_000029 3300049759 Bacteria 18452
160 nmdc:mga03683_8071_c1 3300050489 Bacteria 3686
161 nmdc:mga07m45_106397_c1 3300050496 Bacteria 1614
162 nmdc:mga07m45_34207_c1 3300050496 Bacteria 2824
163 Ga0500610_0000132 3300053079 Bacteria 22386
164 Ga0500578_0177956 3300053086 Bacteria 1312
165 Ga0500651_0000063 3300053093 Bacteria 70772
166 Ga0500566_0069781 3300053094 Bacteria 1974
167 Ga0500569_029132 3300053109 Bacteria 1536
168 Ga0500571_000022 3300053110 Bacteria 56973
169 Ga0500593_000130 3300053117 Bacteria 29842
170 Ga0500618_010861 3300053125 Bacteria 2431
171 Ga0500626_082569 3300053128 Bacteria 1419
172 Ga0500658_0000804 3300053134 Bacteria 12998
173 Ga0500559_0004298 3300053136 Bacteria 6809
174 Ga0500561_0048106 3300053137 Bacteria 1153
175 Ga0500564_058847 3300053138 Bacteria 1746
176 Ga0500568_0011431 3300053139 Bacteria 4120
177 Ga0500634_0004546 3300053161 Bacteria 6440
178 Ga0500636_0050734 3300053177 Bacteria 2440

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048926 Ga0496123_0093123 Ga0496123_0093123_555_1640 277
2 3300013296 Ga0157374_10152510 Ga0157374_101525102 281
3 3300049706 Ga0501229_000649 Ga0501229_000649_1574_2626 283
4 3300021361 Ga0213872_10000003 Ga0213872_10000003241 284
5 3300025920 Ga0207649_10000395 Ga0207649_1000039516 285
6 3300025945 Ga0207679_10000171 Ga0207679_1000017115 285
7 3300031730 Ga0307516_10000018 Ga0307516_1000001875 285
8 3300006881 Ga0068865_100120407 Ga0068865_1001204072 286
9 3300009177 Ga0105248_10021246 Ga0105248_100212464 286
10 3300009177 Ga0105248_10064961 Ga0105248_100649612 286
11 3300014326 Ga0157380_10057499 Ga0157380_100574993 286
12 3300025941 Ga0207711_10060537 Ga0207711_100605373 286
13 3300009093 Ga0105240_10289936 Ga0105240_102899362 287
14 3300042876 Ga0451577_0023857 Ga0451577_0023857_3010_4065 287
15 3300048915 Ga0496112_0004080 Ga0496112_0004080_5140_6189 287
16 3300048916 Ga0496113_0094251 Ga0496113_0094251_295_1344 287
17 3300049514 Ga0501291_002016 Ga0501291_002016_1172_2224 287
18 3300049669 Ga0501235_007472 Ga0501235_007472_1154_2206 287
19 3300049679 Ga0501249_019276 Ga0501249_019276_183_1235 287
20 3300049706 Ga0501229_000037 Ga0501229_000037_1482_2534 287
21 3300005435 Ga0070714_100326543 Ga0070714_1003265432 288
22 3300013297 Ga0157378_10305148 Ga0157378_103051482 288
23 3300028794 Ga0307515_10001570 Ga0307515_1000157041 288
24 3300031507 Ga0307509_10024217 Ga0307509_100242176 288
25 3300031616 Ga0307508_10000030 Ga0307508_1000003050 288
26 3300037418 Ga0395900_0000063 Ga0395900_0000063_117927_118976 288
27 3300037466 Ga0395898_0064199 Ga0395898_0064199_124_1173 288
28 3300044712 Ga0453684_0005623 Ga0453684_0005623_13411_14466 288
29 3300045051 Ga0451576_0331647 Ga0451576_0331647_286_1338 288
30 3300048928 Ga0496125_0016302 Ga0496125_0016302_4110_5165 288
31 3300053128 Ga0500626_082569 Ga0500626_082569_143_1168 288
32 3300053136 Ga0500559_0004298 Ga0500559_0004298_317_1342 288
33 iso_pu_bacteria 2945984333 2945985853 288
34 3300011119 Ga0105246_10213623 Ga0105246_102136231 289
35 3300031731 Ga0307405_10194691 Ga0307405_101946912 289
36 3300053125 Ga0500618_010861 Ga0500618_010861_227_1288 289
37 3300031456 Ga0307513_10000004 Ga0307513_10000004196 290
38 3300031852 Ga0307410_10065912 Ga0307410_100659122 290
39 3300031911 Ga0307412_10016038 Ga0307412_100160382 290
40 3300032002 Ga0307416_100001052 Ga0307416_1000010526 290
41 3300032126 Ga0307415_100153067 Ga0307415_1001530672 290
42 3300046513 Ga0495616_0000722 Ga0495616_0000722_9990_11015 290
43 3300048089 Ga0495614_0012057 Ga0495614_0012057_2749_3774 290
44 3300048921 Ga0496118_0026318 Ga0496118_0026318_712_1767 290
45 3300048926 Ga0496123_0079411 Ga0496123_0079411_54_1079 290
46 3300053137 Ga0500561_0048106 Ga0500561_0048106_112_1137 290
47 3300005331 Ga0070670_100026077 Ga0070670_1000260772 291
48 3300005467 Ga0070706_100106030 Ga0070706_1001060302 291
49 3300005841 Ga0068863_100226053 Ga0068863_1002260531 291
50 3300025303 Ga0209051_1009036 Ga0209051_10090364 291
51 3300031730 Ga0307516_10081170 Ga0307516_100811704 291
52 3300048911 Ga0496108_0153462 Ga0496108_0153462_565_1620 291
53 3300048912 Ga0496109_0274901 Ga0496109_0274901_393_1448 291
54 3300003773 Ga0055537_1001294 Ga0055537_10012947 292
55 3300003784 Ga0055534_1003545 Ga0055534_10035454 292
56 3300003790 Ga0055528_1002304 Ga0055528_10023047 292
57 3300025263 Ga0209565_1000915 Ga0209565_10009153 292
58 3300025273 Ga0209673_1003037 Ga0209673_10030373 292
59 3300025291 Ga0209675_1002149 Ga0209675_10021493 292
60 3300026067 Ga0207678_10047823 Ga0207678_100478231 292
61 3300046691 Ga0495670_0173263 Ga0495670_0173263_86_1120 292
62 3300053086 Ga0500578_0177956 Ga0500578_0177956_101_1180 292
63 3300003316 rootH1_10042419 rootH1_100424192 293
64 3300003322 rootL2_10277552 rootL2_102775522 293
65 3300003761 Ga0055535_1000544 Ga0055535_100054431 293
66 3300003762 Ga0055542_1000004 Ga0055542_1000004484 293
67 3300005364 Ga0070673_100001776 Ga0070673_10000177614 293
68 3300005617 Ga0068859_100240150 Ga0068859_1002401502 293
69 3300005719 Ga0068861_100024057 Ga0068861_1000240577 293
70 3300006931 Ga0097620_100240159 Ga0097620_1002401592 293
71 3300014326 Ga0157380_10092732 Ga0157380_100927323 293
72 3300025228 Ga0209672_101952 Ga0209672_1019524 293
73 3300025229 Ga0209147_101009 Ga0209147_1010098 293
74 3300025242 Ga0209258_100022 Ga0209258_100022483 293
75 3300025254 Ga0209148_1000034 Ga0209148_1000034483 293
76 3300025938 Ga0207704_10022653 Ga0207704_100226535 293
77 3300026089 Ga0207648_10007765 Ga0207648_100077657 293
78 3300026118 Ga0207675_100004162 Ga0207675_1000041624 293
79 3300031456 Ga0307513_10000811 Ga0307513_1000081123 294
80 3300031730 Ga0307516_10003087 Ga0307516_100030874 294
81 3300053139 Ga0500568_0011431 Ga0500568_0011431_211_1272 294
82 3300015262 Ga0182007_10029078 Ga0182007_100290782 295
83 3300046492 Ga0495585_0015542 Ga0495585_0015542_3066_4112 295
84 3300048915 Ga0496112_0299028 Ga0496112_0299028_230_1279 295
85 3300005441 Ga0070700_100047535 Ga0070700_1000475352 296
86 3300005459 Ga0068867_100184075 Ga0068867_1001840752 296
87 3300005843 Ga0068860_100292282 Ga0068860_1002922822 296
88 3300025925 Ga0207650_10013751 Ga0207650_100137515 296
89 3300025940 Ga0207691_10067360 Ga0207691_100673602 296
90 3300026089 Ga0207648_10162497 Ga0207648_101624972 296
91 3300031548 Ga0307408_100059073 Ga0307408_1000590731 296
92 3300031911 Ga0307412_10202527 Ga0307412_102025272 296
93 3300039447 Ga0436361_1061851 Ga0436361_1061851_30253_31323 296
94 3300046515 Ga0495620_0027771 Ga0495620_0027771_907_1962 296
95 3300046615 Ga0495656_0037513 Ga0495656_0037513_700_1749 296
96 3300046684 Ga0495669_0075004 Ga0495669_0075004_192_1241 296
97 3300046692 Ga0495671_0008716 Ga0495671_0008716_3086_4141 296
98 3300053079 Ga0500610_0000132 Ga0500610_0000132_12043_13098 296
99 3300053109 Ga0500569_029132 Ga0500569_029132_344_1396 296
100 3300053117 Ga0500593_000130 Ga0500593_000130_14825_15877 296
101 3300053161 Ga0500634_0004546 Ga0500634_0004546_4205_5260 296
102 3300003578 Ga0006562J51391_1051199 Ga0006562J51391_10511993 297
103 3300006177 Ga0075362_10048246 Ga0075362_100482462 297
104 3300006353 Ga0075370_10022890 Ga0075370_100228903 297
105 3300013100 Ga0157373_10003398 Ga0157373_100033983 297
106 3300014497 Ga0182008_10009578 Ga0182008_100095785 297
107 3300015261 Ga0182006_1007168 Ga0182006_10071683 297
108 3300021361 Ga0213872_10004014 Ga0213872_100040143 297
109 3300031731 Ga0307405_10107444 Ga0307405_101074441 297
110 3300039447 Ga0436361_0499504 Ga0436361_0499504_6469_7542 297
111 3300050489 nmdc:mga03683_8071_c1 nmdc:mga03683_8071_c1_809_1864 297
112 3300050496 nmdc:mga07m45_34207_c1 nmdc:mga07m45_34207_c1_1201_2256 297
113 iso_pu_bacteria 2643221611 2644073721 297
114 3300005330 Ga0070690_100040230 Ga0070690_1000402303 298
115 3300005333 Ga0070677_10024727 Ga0070677_100247272 298
116 3300005338 Ga0068868_100113307 Ga0068868_1001133072 298
117 3300005340 Ga0070689_100005963 Ga0070689_1000059635 298
118 3300005353 Ga0070669_100137629 Ga0070669_1001376292 298
119 3300005354 Ga0070675_100148287 Ga0070675_1001482871 298
120 3300005356 Ga0070674_100049170 Ga0070674_1000491703 298
121 3300005441 Ga0070700_100056750 Ga0070700_1000567502 298
122 3300005456 Ga0070678_100005370 Ga0070678_1000053702 298
123 3300005459 Ga0068867_100028675 Ga0068867_1000286751 298
124 3300005459 Ga0068867_100175371 Ga0068867_1001753712 298
125 3300005543 Ga0070672_100007591 Ga0070672_1000075912 298
126 3300005617 Ga0068859_100039732 Ga0068859_1000397322 298
127 3300005618 Ga0068864_100029544 Ga0068864_1000295442 298
128 3300005618 Ga0068864_100039731 Ga0068864_1000397313 298
129 3300005844 Ga0068862_100063449 Ga0068862_1000634494 298
130 3300006237 Ga0097621_100013441 Ga0097621_1000134417 298
131 3300006358 Ga0068871_100009178 Ga0068871_1000091785 298
132 3300006931 Ga0097620_100039735 Ga0097620_1000397352 298
133 3300009176 Ga0105242_10024674 Ga0105242_100246744 298
134 3300013297 Ga0157378_10042909 Ga0157378_100429093 298
135 3300014969 Ga0157376_10135428 Ga0157376_101354282 298
136 3300017792 Ga0163161_10013045 Ga0163161_100130453 298
137 3300025923 Ga0207681_10010405 Ga0207681_100104053 298
138 3300025923 Ga0207681_10112780 Ga0207681_101127802 298
139 3300025934 Ga0207686_10016330 Ga0207686_100163304 298
140 3300025936 Ga0207670_10025513 Ga0207670_100255134 298
141 3300025937 Ga0207669_10031367 Ga0207669_100313675 298
142 3300025940 Ga0207691_10103240 Ga0207691_101032402 298
143 3300026089 Ga0207648_10036177 Ga0207648_100361775 298
144 3300026118 Ga0207675_100013979 Ga0207675_1000139793 298
145 3300026121 Ga0207683_10016796 Ga0207683_100167967 298
146 3300028379 Ga0268266_10154843 Ga0268266_101548432 298
147 3300028380 Ga0268265_10037108 Ga0268265_100371084 298
148 3300046692 Ga0495671_0059540 Ga0495671_0059540_59_1111 298
149 3300049759 Ga0501262_000029 Ga0501262_000029_163_1218 298
150 3300053093 Ga0500651_0000063 Ga0500651_0000063_29933_30982 298
151 3300053094 Ga0500566_0069781 Ga0500566_0069781_339_1388 298
152 3300053110 Ga0500571_000022 Ga0500571_000022_39078_40127 298
153 3300053134 Ga0500658_0000804 Ga0500658_0000804_3352_4401 298
154 3300053138 Ga0500564_058847 Ga0500564_058847_444_1493 298
155 3300053177 Ga0500636_0050734 Ga0500636_0050734_1035_2084 298
156 3300005355 Ga0070671_100094217 Ga0070671_1000942172 299
157 3300005364 Ga0070673_100085139 Ga0070673_1000851392 299
158 3300005543 Ga0070672_100307862 Ga0070672_1003078621 299
159 3300005564 Ga0070664_100307276 Ga0070664_1003072762 299
160 3300005719 Ga0068861_100016190 Ga0068861_1000161902 299
161 3300005840 Ga0068870_10119269 Ga0068870_101192691 299
162 3300006881 Ga0068865_100105290 Ga0068865_1001052902 299
163 3300025893 Ga0207682_10012824 Ga0207682_100128242 299
164 3300025926 Ga0207659_10149993 Ga0207659_101499931 299
165 3300025941 Ga0207711_10221307 Ga0207711_102213071 299
166 3300025972 Ga0207668_10041714 Ga0207668_100417142 299
167 3300026023 Ga0207677_10042153 Ga0207677_100421531 299
168 3300026075 Ga0207708_10106125 Ga0207708_101061251 299
169 3300026095 Ga0207676_10032066 Ga0207676_100320663 299
170 3300031903 Ga0307407_10118026 Ga0307407_101180262 300
171 iso_pu_bacteria 2885198086 2885198683 300
172 iso_pu_bacteria 2885211737 2885211937 300
173 iso_pu_bacteria 2928084124 2928084360 300
174 iso_pu_bacteria 2643221646 2644259152 301
175 iso_pu_bacteria 2643221654 2644305849 301
176 3300050496 nmdc:mga07m45_106397_c1 nmdc:mga07m45_106397_c1_365_1414 302
177 iso_pu_bacteria 2816332133 2816472808 302
178 iso_pu_bacteria 2899924645 2899925658 302
179 iso_pu_bacteria 2928037797 2928038241 302
180 iso_pu_bacteria 2928044640 2928046154 302
181 iso_pu_bacteria 2928051484 2928053849 302
182 iso_pu_bacteria 2928064002 2928067395 302
183 iso_pu_bacteria 2928070936 2928076376 302
184 3300005467 Ga0070706_100001200 Ga0070706_10000120011 303
185 3300005468 Ga0070707_100166292 Ga0070707_1001662921 303
186 3300005471 Ga0070698_100037535 Ga0070698_1000375353 303
187 3300006195 Ga0075366_10033551 Ga0075366_100335512 303
188 3300025910 Ga0207684_10002095 Ga0207684_100020959 303
189 3300003187 JGI25151J46595_10000577 JGI25151J46595_1000057729 304
190 3300025258 Ga0209129_1005149 Ga0209129_10051494 304
191 3300025294 Ga0209025_1000432 Ga0209025_100043261 304
192 3300046683 Ga0495658_0002773 Ga0495658_0002773_4625_5689 304
193 iso_pu_bacteria 2738541307 2738883766 304

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00892

EamA

EamA-like transporter family

162

295

0.93

PF00892

EamA

EamA-like transporter family

17

152

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
5i20-assembly4.cif.gz_D crystal structure of protein 0.8622 11 285
7paf-assembly1.cif.gz_D streptococcus pneumoniae choline importer licb in lipid nanodiscs 0.856 12 285
7paf-assembly1.cif.gz_D streptococcus pneumoniae choline importer licb in lipid nanodiscs 0.8416 12 285
5i20-assembly4.cif.gz_D crystal structure of protein 0.8368 11 285
5i20-assembly3.cif.gz_C crystal structure of protein 0.8242 11 292
ID Description Score Start End Superfamily
af_A0A0P0YAS8_28_439_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.7461 10 295 1.20.1740.10
af_A0A0P0YAS8_28_439_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.7092 10 295 1.20.1740.10
af_Q8RY83_36_351_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.699 8 289 1.20.1740.10
af_Q20583_6_327_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.6983 14 290 1.20.1740.10
af_A0A0P0WMA8_96_409_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.6956 12 287 1.20.1740.10
ID Description Score Start End GO Terms
AF-A0A1F4DX11-F1-model_v4 EamA domain-containing protein 0.91 7 292 GO:0005886
AF-A0A7C4M6Y1-F1-model_v4 DMT family transporter 0.9063 7 287 GO:0016020
AF-A0A7W6IBV4-F1-model_v4 Drug/metabolite transporter (DMT)-like permease 0.9051 9 287 GO:0016020
AF-A0A2G4J3S1-F1-model_v4 EamA family transporter 0.9044 7 287 GO:0016020
AF-A0A1M4W3F3-F1-model_v4 Uncharacterized membrane protein 0.9029 11 285 GO:0005886

Feature Viewer

pLDDT pTM Quality
83.74 0.84 High
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Predicted Structure (AlphaFold2)

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