F296330

General Info

Members Datasets Scaffolds Average Seq Length
192 141 370 394

Family's Representative Sequence

Representative Sequence 3300050513|nmdc:mga0rr50_230103_c1|nmdc:mga0rr50_230103_c1_14_1243
Length 409
Sequence MPVTRRGLFNLVGSGGSSPISGAVLAARGLEAHYGEYHAQQARGQNPGRTRPVLPPGVEEIRISSNENPLGPGRAALDAILGKFPEAGRYPFNSTPSEGDLAAAIAGKFKVKPENVVLGAGSQEILKNSMRAWVSPTRPFVTALPTFENCTGYARKYKLPLTEVPVDSQMRLDVEPMIAAAVKGAGLVFFNNPNNPTATVHGAKTVTDMVERIRKASPDTVILIDEAYHDYVTDPSYQTAVPLALATPNVLVARTFSKAYGMAGMRIGYAVGRADTLKKLAALKMPYNVSVFGIGAAIASLNDPQHIDDERRRNTEVRDFTMKALREMGAKPADSQGNFLFADIGMPAKDFRDACAKQGVMVGRDFPPFEKTHCRISIGTMAEMQKATEVFRGALKKITTTSSGSGKGR

Samples

Sample ID Description Type Environment
1 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
2 3300003574 Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_26 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
3 3300004798 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
4 3300004801 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
5 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
7 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
10 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
11 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
12 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
13 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
14 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
15 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
16 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
17 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
20 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
21 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
22 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
23 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
24 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
25 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
26 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
27 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
28 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
31 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
32 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
33 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
34 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
35 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
36 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
37 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
38 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
39 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
40 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
41 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
42 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
43 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
44 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
45 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
46 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
47 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
48 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
50 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
52 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
53 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
54 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
55 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
56 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
57 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
83 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
84 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
85 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
86 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
87 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
88 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
89 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
90 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
91 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
92 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
93 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
94 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
95 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
96 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
97 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
98 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
99 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
100 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
101 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
102 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
103 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
104 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
105 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
106 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
107 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
108 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
109 3300049128 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
110 3300049539 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_B_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
111 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
116 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
117 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
118 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
119 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
120 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
121 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
123 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
124 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
125 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
126 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
127 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
128 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
129 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
130 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
131 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
132 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
133 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
134 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
135 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
136 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
137 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
138 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
139 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
140 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
141 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.4
Metatranscriptomes 2.6
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.33
Nodule 0
Rhizoplane 2.08
Rhizosphere 88.54
Stem 0
Stem Tuber 0
Unclassified 7.29

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 nmdc:mga0rr50_230103_c1 3300050513 Bacteria 1533
2 Ga0007410J51695_1064261 3300003574 Bacteria 1322
3 Ga0058859_10033273 3300004798 Bacteria 2498
4 Ga0058860_10023794 3300004801 Bacteria 1403
5 Ga0065715_10005829 3300005293 Bacteria 3863
6 Ga0065715_10017918 3300005293 Unclassified 1575
7 Ga0065715_10089892 3300005293 Bacteria 8186
8 Ga0065715_10094942 3300005293 Bacteria 4206
9 Ga0070676_10006045 3300005328 Bacteria 6460
10 Ga0070690_100028994 3300005330 Bacteria 3430
11 Ga0070670_100010775 3300005331 Bacteria 7810
12 Ga0070670_100211862 3300005331 Bacteria 1685
13 Ga0070666_10038975 3300005335 Bacteria 3164
14 Ga0068868_100026062 3300005338 Bacteria 4453
15 Ga0070689_100012015 3300005340 Bacteria 6224
16 Ga0070691_10018855 3300005341 Bacteria 3182
17 Ga0070687_100007682 3300005343 Bacteria 4515
18 Ga0070675_100084471 3300005354 Bacteria 2651
19 Ga0070671_100150773 3300005355 Bacteria 1963
20 Ga0070674_100130857 3300005356 Bacteria 1870
21 Ga0070673_100007826 3300005364 Bacteria 7079
22 Ga0070659_100245917 3300005366 Bacteria 1481
23 Ga0070694_100167913 3300005444 Unclassified 1615
24 Ga0070708_100051668 3300005445 Bacteria 3642
25 Ga0068867_100013124 3300005459 Bacteria 5866
26 Ga0070707_100266204 3300005468 Bacteria 1667
27 Ga0070699_100020772 3300005518 Bacteria 5663
28 Ga0070697_100053672 3300005536 Bacteria 3276
29 Ga0070672_100077402 3300005543 Bacteria 2660
30 Ga0070704_100026064 3300005549 Bacteria 3857
31 Ga0068854_100048331 3300005578 Bacteria 3035
32 Ga0068852_100123425 3300005616 Bacteria 2375
33 Ga0068858_100032109 3300005842 Bacteria 4877
34 Ga0068858_100035517 3300005842 Bacteria 4623
35 Ga0081538_10037508 3300005981 Bacteria 3143
36 Ga0070717_10029035 3300006028 Unclassified 4433
37 Ga0075365_10001939 3300006038 Bacteria 9768
38 Ga0075365_10003312 3300006038 Bacteria 8269
39 Ga0075368_10023512 3300006042 Bacteria 2355
40 Ga0075364_10068712 3300006051 Unclassified 2330
41 Ga0070716_100069697 3300006173 Bacteria 2062
42 Ga0075362_10001993 3300006177 Bacteria 6721
43 Ga0075367_10012334 3300006178 Bacteria 4554
44 Ga0075367_10071386 3300006178 Bacteria 2088
45 Ga0075366_10076677 3300006195 Bacteria 1995
46 Ga0075370_10001417 3300006353 Bacteria 10375
47 Ga0075428_100049470 3300006844 Bacteria 4612
48 Ga0075430_100054957 3300006846 Bacteria 3349
49 Ga0075431_100092020 3300006847 Bacteria 3130
50 Ga0075431_100150493 3300006847 Bacteria 2396
51 Ga0075433_10077504 3300006852 Bacteria 2928
52 Ga0075434_100001133 3300006871 Bacteria 21943
53 Ga0075434_100021678 3300006871 Bacteria 6248
54 Ga0075434_100062772 3300006871 Bacteria 3699
55 Ga0075429_100044894 3300006880 Bacteria 3844
56 Ga0075436_100061366 3300006914 Bacteria 2597
57 Ga0075435_100011156 3300007076 Bacteria 6592
58 Ga0111539_10252801 3300009094 Bacteria 2052
59 Ga0105245_10047617 3300009098 Bacteria 3833
60 Ga0105245_10083201 3300009098 Bacteria 2929
61 Ga0114129_10006185 3300009147 Bacteria 16986
62 Ga0114129_10013788 3300009147 Bacteria 11517
63 Ga0114129_10066562 3300009147 Bacteria 5026
64 Ga0105243_10015739 3300009148 Bacteria 5720
65 Ga0105241_10060880 3300009174 Bacteria 2905
66 Ga0105242_10029800 3300009176 Bacteria 4354
67 Ga0105242_10070531 3300009176 Unclassified 2897
68 Ga0105248_10067532 3300009177 Bacteria 4015
69 Ga0105248_10144856 3300009177 Bacteria 2681
70 Ga0163163_10000023 3300014325 Bacteria 185843
71 Ga0157380_10224801 3300014326 Bacteria 1682
72 Ga0207642_10047601 3300025899 Bacteria 1917
73 Ga0207688_10017354 3300025901 Bacteria 3911
74 Ga0207647_10156256 3300025904 Bacteria 1331
75 Ga0207645_10004923 3300025907 Bacteria 9797
76 Ga0207662_10016936 3300025918 Bacteria 4118
77 Ga0207650_10035422 3300025925 Bacteria 3624
78 Ga0207687_10061896 3300025927 Unclassified 2644
79 Ga0207644_10046402 3300025931 Bacteria 3095
80 Ga0207686_10009955 3300025934 Bacteria 5169
81 Ga0207686_10056251 3300025934 Unclassified 2472
82 Ga0207709_10031643 3300025935 Bacteria 3092
83 Ga0207670_10031957 3300025936 Bacteria 3379
84 Ga0207704_10235873 3300025938 Bacteria 1363
85 Ga0207665_10079057 3300025939 Bacteria 2260
86 Ga0207691_10009788 3300025940 Bacteria 9202
87 Ga0207711_10050321 3300025941 Bacteria 3566
88 Ga0207712_10083463 3300025961 Bacteria 2332
89 Ga0207703_10036308 3300026035 Bacteria 3922
90 Ga0207708_10006497 3300026075 Bacteria 8655
91 Ga0207641_10176247 3300026088 Bacteria 1955
92 Ga0207648_10005414 3300026089 Bacteria 12861
93 Ga0207674_10019071 3300026116 Bacteria 7434
94 Ga0207675_100057227 3300026118 Bacteria 3637
95 Ga0207675_100297157 3300026118 Bacteria 1572
96 Ga0207683_10060780 3300026121 Bacteria 3322
97 Ga0207683_10065973 3300026121 Bacteria 3191
98 Ga0207698_10094963 3300026142 Bacteria 2453
99 Ga0268264_10418820 3300028381 Bacteria 1291
100 Ga0307408_100351311 3300031548 Bacteria 1251
101 Ga0307405_10006338 3300031731 Bacteria 5812
102 Ga0307413_10002147 3300031824 Bacteria 7920
103 Ga0307410_10039245 3300031852 Bacteria 3107
104 Ga0307410_10052999 3300031852 Bacteria 2743
105 Ga0307406_10081823 3300031901 Bacteria 2148
106 Ga0307407_10002515 3300031903 Bacteria 7193
107 Ga0307407_10006741 3300031903 Bacteria 5139
108 Ga0307407_10225362 3300031903 Bacteria 1270
109 Ga0307412_10006888 3300031911 Bacteria 6449
110 Ga0307409_100004935 3300031995 Bacteria 7591
111 Ga0307409_100038116 3300031995 Bacteria 3551
112 Ga0307409_100317194 3300031995 Bacteria 1457
113 Ga0307416_100025899 3300032002 Bacteria 4311
114 Ga0307416_100108947 3300032002 Bacteria 2435
115 Ga0307416_100263507 3300032002 Bacteria 1686
116 Ga0307414_10039239 3300032004 Bacteria 3188
117 Ga0307414_10070644 3300032004 Bacteria 2515
118 Ga0307411_10000455 3300032005 Bacteria 14101
119 Ga0307411_10011639 3300032005 Bacteria 4761
120 Ga0307415_100206801 3300032126 Bacteria 1562
121 Ga0373934_0000923 3300035086 Bacteria 10620
122 Ga0373960_0005358 3300035121 Bacteria 2967
123 Ga0373943_0037644 3300035170 Bacteria 2323
124 Ga0373942_0013386 3300035207 Bacteria 1972
125 Ga0373947_0014623 3300035725 Bacteria 4500
126 Ga0373925_0003244 3300037068 Bacteria 12690
127 Ga0439446_0003367 3300042156 Bacteria 3958
128 Ga0439446_0021449 3300042156 Bacteria 1826
129 Ga0439434_0008585 3300042435 Bacteria 2999
130 Ga0439435_0000231 3300042436 Bacteria 8001
131 Ga0439460_0016322 3300042461 Bacteria 1976
132 Ga0439460_0051338 3300042461 Bacteria 1237
133 Ga0451576_0042665 3300045051 Bacteria 4788
134 Ga0495647_0049036 3300046681 Bacteria 1635
135 Ga0496107_0079595 3300048910 Bacteria 2389
136 Ga0496109_0110652 3300048912 Unclassified 2554
137 Ga0496112_0063941 3300048915 Bacteria 3630
138 Ga0496112_0168945 3300048915 Bacteria 2153
139 Ga0501308_000616 3300049128 Bacteria 2426
140 Ga0501323_000915 3300049539 Bacteria 2412
141 Ga0501036_0088203 3300049572 Bacteria 2622
142 Ga0501039_0315775 3300049575 Bacteria 1228
143 Ga0501041_0019138 3300049577 Bacteria 4084
144 Ga0501048_0060336 3300049582 Bacteria 2688
145 Ga0501071_0064807 3300049587 Bacteria 2652
146 Ga0501072_0013979 3300049588 Bacteria 6151
147 Ga0501072_0028615 3300049588 Bacteria 4351
148 Ga0501075_0030512 3300049591 Bacteria 3994
149 Ga0501076_0015178 3300049592 Bacteria 5818
150 Ga0501076_0046531 3300049592 Bacteria 3428
151 Ga0501076_0053983 3300049592 Bacteria 3185
152 Ga0501077_0117420 3300049593 Unclassified 1686
153 Ga0501079_0045216 3300049741 Bacteria 3398
154 Ga0501079_0046527 3300049741 Bacteria 3348
155 Ga0501035_0328888 3300049822 Bacteria 1283
156 Ga0501045_0009563 3300049824 Bacteria 6783
157 nmdc:mga03683_2782_c1 3300050489 Bacteria 5502
158 nmdc:mga00v17_4003_c1 3300050491 Bacteria 7610
159 nmdc:mga0yw44_16897_c1 3300050492 Bacteria 3954
160 nmdc:mga0yw44_338_c1 3300050492 Bacteria 16401
161 nmdc:mga0k408_6703_c1 3300050493 Bacteria 6139
162 nmdc:mga06z11_20464_c1 3300050494 Bacteria 3059
163 nmdc:mga06z11_62874_c1 3300050494 Bacteria 1940
164 nmdc:mga05p37_38968_c1 3300050507 Bacteria 5830
165 nmdc:mga05p37_463911_c1 3300050507 Unclassified 1463
166 nmdc:mga0qj67_71051_c1 3300050509 Bacteria 2778
167 nmdc:mga06r32_8446_c1 3300050510 Bacteria 9280
168 nmdc:mga08y16_294836_c1 3300050511 Bacteria 1672
169 nmdc:mga0n895_87625_c1 3300050512 Bacteria 3111
170 nmdc:mga0rr50_24082_c1 3300050513 Bacteria 4212
171 nmdc:mga08x19_116050_c1 3300050514 Bacteria 1790
172 nmdc:mga0a205_73957_c1 3300050515 Bacteria 3292
173 Ga0495601_0041076 3300053077 Bacteria 2899
174 Ga0501084_0140454 3300054114 Bacteria 2034
175 Ga0590071_000078 3300059421 Bacteria 26551
176 Ga0590071_000727 3300059421 Bacteria 9283
177 Ga0590071_003071 3300059421 Unclassified 4137
178 Ga0590071_006010 3300059421 Bacteria 2903
179 Ga0590074_005162 3300059423 Unclassified 2159
180 Ga0590075_001089 3300059424 Bacteria 7005
181 Ga0590075_003217 3300059424 Unclassified 3888
182 Ga0590077_001256 3300059426 Bacteria 6073
183 Ga0590077_001388 3300059426 Bacteria 5705
184 Ga0501082_0035605 3300060353 Bacteria 4291
185 Ga0501082_0425038 3300060353 Bacteria 1160
186 nmdc:mga0rr50_230103_c1
187 Ga0007410J51695_1064261
188 Ga0058859_10033273
189 Ga0058860_10023794
190 Ga0065715_10005829
191 Ga0065715_10017918
192 Ga0065715_10089892
193 Ga0065715_10094942
194 Ga0070676_10006045
195 Ga0070690_100028994
196 Ga0070670_100010775
197 Ga0070670_100211862
198 Ga0070666_10038975
199 Ga0068868_100026062
200 Ga0070689_100012015
201 Ga0070691_10018855
202 Ga0070687_100007682
203 Ga0070675_100084471
204 Ga0070671_100150773
205 Ga0070674_100130857
206 Ga0070673_100007826
207 Ga0070659_100245917
208 Ga0070694_100167913
209 Ga0070708_100051668
210 Ga0068867_100013124
211 Ga0070707_100266204
212 Ga0070699_100020772
213 Ga0070697_100053672
214 Ga0070672_100077402
215 Ga0070704_100026064
216 Ga0068854_100048331
217 Ga0068852_100123425
218 Ga0068858_100032109
219 Ga0068858_100035517
220 Ga0081538_10037508
221 Ga0070717_10029035
222 Ga0075365_10001939
223 Ga0075365_10003312
224 Ga0075368_10023512
225 Ga0075364_10068712
226 Ga0070716_100069697
227 Ga0075362_10001993
228 Ga0075367_10012334
229 Ga0075367_10071386
230 Ga0075366_10076677
231 Ga0075370_10001417
232 Ga0075428_100049470
233 Ga0075430_100054957
234 Ga0075431_100092020
235 Ga0075431_100150493
236 Ga0075433_10077504
237 Ga0075434_100001133
238 Ga0075434_100021678
239 Ga0075434_100062772
240 Ga0075429_100044894
241 Ga0075436_100061366
242 Ga0075435_100011156
243 Ga0111539_10252801
244 Ga0105245_10047617
245 Ga0105245_10083201
246 Ga0114129_10006185
247 Ga0114129_10013788
248 Ga0114129_10066562
249 Ga0105243_10015739
250 Ga0105241_10060880
251 Ga0105242_10029800
252 Ga0105242_10070531
253 Ga0105248_10067532
254 Ga0105248_10144856
255 Ga0163163_10000023
256 Ga0157380_10224801
257 Ga0207642_10047601
258 Ga0207688_10017354
259 Ga0207647_10156256
260 Ga0207645_10004923
261 Ga0207662_10016936
262 Ga0207650_10035422
263 Ga0207687_10061896
264 Ga0207644_10046402
265 Ga0207686_10009955
266 Ga0207686_10056251
267 Ga0207709_10031643
268 Ga0207670_10031957
269 Ga0207704_10235873
270 Ga0207665_10079057
271 Ga0207691_10009788
272 Ga0207711_10050321
273 Ga0207712_10083463
274 Ga0207703_10036308
275 Ga0207708_10006497
276 Ga0207641_10176247
277 Ga0207648_10005414
278 Ga0207674_10019071
279 Ga0207675_100057227
280 Ga0207675_100297157
281 Ga0207683_10060780
282 Ga0207683_10065973
283 Ga0207698_10094963
284 Ga0268264_10418820
285 Ga0307408_100351311
286 Ga0307405_10006338
287 Ga0307413_10002147
288 Ga0307410_10039245
289 Ga0307410_10052999
290 Ga0307406_10081823
291 Ga0307407_10002515
292 Ga0307407_10006741
293 Ga0307407_10225362
294 Ga0307412_10006888
295 Ga0307409_100004935
296 Ga0307409_100038116
297 Ga0307409_100317194
298 Ga0307416_100025899
299 Ga0307416_100108947
300 Ga0307416_100263507
301 Ga0307414_10039239
302 Ga0307414_10070644
303 Ga0307411_10000455
304 Ga0307411_10011639
305 Ga0307415_100206801
306 Ga0373934_0000923
307 Ga0373960_0005358
308 Ga0373943_0037644
309 Ga0373942_0013386
310 Ga0373947_0014623
311 Ga0373925_0003244
312 Ga0439446_0003367
313 Ga0439446_0021449
314 Ga0439434_0008585
315 Ga0439435_0000231
316 Ga0439460_0016322
317 Ga0439460_0051338
318 Ga0451576_0042665
319 Ga0495647_0049036
320 Ga0496107_0079595
321 Ga0496109_0110652
322 Ga0496112_0063941
323 Ga0496112_0168945
324 Ga0501308_000616
325 Ga0501323_000915
326 Ga0501036_0088203
327 Ga0501039_0315775
328 Ga0501041_0019138
329 Ga0501048_0060336
330 Ga0501071_0064807
331 Ga0501072_0013979
332 Ga0501072_0028615
333 Ga0501075_0030512
334 Ga0501076_0015178
335 Ga0501076_0046531
336 Ga0501076_0053983
337 Ga0501077_0117420
338 Ga0501079_0045216
339 Ga0501079_0046527
340 Ga0501035_0328888
341 Ga0501045_0009563
342 nmdc:mga03683_2782_c1
343 nmdc:mga00v17_4003_c1
344 nmdc:mga0yw44_16897_c1
345 nmdc:mga0yw44_338_c1
346 nmdc:mga0k408_6703_c1
347 nmdc:mga06z11_20464_c1
348 nmdc:mga06z11_62874_c1
349 nmdc:mga05p37_38968_c1
350 nmdc:mga05p37_463911_c1
351 nmdc:mga0qj67_71051_c1
352 nmdc:mga06r32_8446_c1
353 nmdc:mga08y16_294836_c1
354 nmdc:mga0n895_87625_c1
355 nmdc:mga0rr50_24082_c1
356 nmdc:mga08x19_116050_c1
357 nmdc:mga0a205_73957_c1
358 Ga0495601_0041076
359 Ga0501084_0140454
360 Ga0590071_000078
361 Ga0590071_000727
362 Ga0590071_003071
363 Ga0590071_006010
364 Ga0590074_005162
365 Ga0590075_001089
366 Ga0590075_003217
367 Ga0590077_001256
368 Ga0590077_001388
369 Ga0501082_0035605
370 Ga0501082_0425038

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00155

Aminotran_1_2

Aminotransferase class I and II

58

391

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ly1-assembly1.cif.gz_B crystal structure of putative histidinol-phosphate aminotransferase (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a resolution 0.9521 53 391
3ffh-assembly1.cif.gz_B the crystal structure of histidinol-phosphate aminotransferase from listeria innocua clip11262. 0.9262 51 387
3ly1-assembly1.cif.gz_B crystal structure of putative histidinol-phosphate aminotransferase (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a resolution 0.9174 53 391
4r5z-assembly2.cif.gz_D crystal structure of rv3772 encoded aminotransferase 0.9145 44 391
4wbt-assembly2.cif.gz_B-3 crystal structure of histidinol-phosphate aminotransferase from sinorhizobium meliloti in complex with pyridoxal-5'-phosphate 0.909 33 391
ID Description Score Start End Superfamily
af_Q2G087_68_261_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9568 95 291 3.40.640.10
3ffhA02 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9501 94 295 3.40.640.10
af_Q2G087_68_261_3.40.640.10 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9425 95 291 3.40.640.10
af_P9WML5_24_353_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9406 56 391 3.50.50.60
af_P9WML5_24_353_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9269 56 391 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A7W1HK25-F1-model_v4 Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.9606 195 389 GO:0008483
GO:0009058
GO:0030170
AF-A0A523XLE4-F1-model_v4 Histidinol-phosphate aminotransferase (EC 2.6.1.9) (Imidazole acetol-phosphate transaminase) 0.9536 50 390 GO:0000105
GO:0004400
GO:0030170
AF-S2RGC1-F1-model_v4 Histidinol-phosphate aminotransferase 0.9534 110 384 GO:0008483
GO:0009058
GO:0030170
AF-A0A829PF26-F1-model_v4 Putative phenylalanine aminotransferase 0.95 65 387 GO:0008483
GO:0009058
GO:0030170
AF-P60998-F1-model_v4 Histidinol-phosphate aminotransferase (EC 2.6.1.9) (Imidazole acetol-phosphate transaminase) 0.9491 51 391 GO:0000105
GO:0004400
GO:0030170

Map