F295496

General Info

Members Datasets Scaffolds Average Seq Length
192 135 384 416

Family's Representative Sequence

Representative Sequence 3300006846|Ga0075430_100074124|Ga0075430_1000741243
Length 444
Sequence MKASRPRSPHARRNGRAPEHGLPESEIIYDWNRVQSRPRPTHAFDLFDETLRDGLQSPSVTDPPLEDKLEILELMSSLGIRSADIGLPGAGQRAFDDVVAMCRYIQKRKLKVSPGAAARTVLADIKPVAEAQQRSGQKLVLYTFIGSSPIRQFAEDWDVGFIIRTSVEAIDFAVKEGLEVAYVTEDTVRSAPANLDPIFRAAVEHGAARLVLCDTVGHATPDGARALVTWARGLLAGIGAMNVKLEWHGHNDRGLAVPNALAALEAGAQRLHGCGLGVGERVGNTSMDQLLLNLKLLGWFDHDLSKLVPYVQKVSQACRIPIPVNYPLSGSDAFRTATGVHAAAIIKAQKRGDTWLADRVYSGVPAGEFGKHQQIEIGHMSGMSNVKYWLERRGIPCDEALCQDILKRAKTCHWTLKDEEILEVVAAHGLPSSRAVLKGKRLSS

Samples

Sample ID Description Type Environment
1 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
7 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
15 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
28 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
29 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
30 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
31 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
33 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
37 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
38 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
39 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
40 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
41 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
45 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
46 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
47 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
48 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
72 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
73 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
74 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
76 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
77 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
78 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
79 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
80 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
81 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
82 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
83 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
84 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
85 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
86 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
87 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
88 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
89 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
90 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
91 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
92 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
93 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
94 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
95 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
96 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
97 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
98 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
99 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
100 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
101 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
102 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
103 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
104 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
105 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
106 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
107 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
108 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
109 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
110 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
111 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
112 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
113 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
114 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
115 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
116 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
117 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
118 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
119 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
120 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
121 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
122 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
123 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
124 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
125 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
126 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
127 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
128 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
129 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
130 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
131 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
132 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
133 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
134 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
135 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 97.4
Stem 0
Stem Tuber 0
Unclassified 2.08

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075430_100074124 3300006846 Bacteria 2854
2 Ga0070683_100004535 3300005329 Bacteria 11464
3 Ga0070683_100020990 3300005329 Bacteria 5824
4 Ga0070680_100083362 3300005336 Bacteria 2640
5 Ga0070680_100118223 3300005336 Bacteria 2211
6 Ga0070691_10006992 3300005341 Bacteria 5171
7 Ga0070714_100018398 3300005435 Bacteria 5675
8 Ga0070708_100002525 3300005445 Bacteria 14136
9 Ga0070708_100012513 3300005445 Bacteria 6926
10 Ga0070678_100013097 3300005456 Bacteria 5186
11 Ga0070681_10009983 3300005458 Bacteria 9360
12 Ga0070681_10011708 3300005458 Bacteria 8690
13 Ga0070681_10195746 3300005458 Bacteria 1940
14 Ga0068867_100040086 3300005459 Bacteria 3416
15 Ga0070706_100000074 3300005467 Bacteria 115226
16 Ga0070707_100005205 3300005468 Bacteria 12174
17 Ga0070699_100055249 3300005518 Bacteria 3438
18 Ga0070699_100058265 3300005518 Bacteria 3346
19 Ga0070679_100012844 3300005530 Bacteria 8015
20 Ga0070679_100031118 3300005530 Bacteria 5271
21 Ga0070679_100041022 3300005530 Bacteria 4607
22 Ga0070697_100020269 3300005536 Bacteria 5260
23 Ga0070695_100012635 3300005545 Bacteria 5069
24 Ga0070695_100128555 3300005545 Bacteria 1743
25 Ga0070665_100043856 3300005548 Bacteria 4493
26 Ga0068855_100031472 3300005563 Bacteria 6335
27 Ga0068855_100097011 3300005563 Bacteria 3395
28 Ga0070664_100112133 3300005564 Bacteria 2381
29 Ga0068854_100080935 3300005578 Unclassified 2398
30 Ga0068856_100286623 3300005614 Bacteria 1664
31 Ga0068852_100068443 3300005616 Bacteria 3107
32 Ga0068859_100000001 3300005617 Bacteria 545224
33 Ga0068859_100070104 3300005617 Bacteria 3541
34 Ga0068858_100290863 3300005842 Bacteria 1557
35 Ga0068860_100005615 3300005843 Bacteria 12675
36 Ga0070717_10025622 3300006028 Bacteria 4694
37 Ga0075428_100057937 3300006844 Bacteria 4241
38 Ga0075428_100105967 3300006844 Bacteria 3065
39 Ga0075428_100320479 3300006844 Bacteria 1666
40 Ga0075430_100066150 3300006846 Bacteria 3035
41 Ga0075431_100020586 3300006847 Bacteria 6741
42 Ga0075431_100077313 3300006847 Bacteria 3435
43 Ga0075431_100119015 3300006847 Bacteria 2725
44 Ga0075431_100172539 3300006847 Bacteria 2222
45 Ga0075433_10000355 3300006852 Bacteria 28719
46 Ga0075429_100033073 3300006880 Bacteria 4493
47 Ga0075436_100012391 3300006914 Bacteria 5845
48 Ga0097620_100000001 3300006931 Bacteria 545224
49 Ga0097620_100070104 3300006931 Bacteria 3541
50 Ga0075435_100234991 3300007076 Bacteria 1558
51 Ga0099794_10000029 3300007265 Bacteria 59066
52 Ga0105240_10026535 3300009093 Bacteria 7600
53 Ga0105240_10090221 3300009093 Bacteria 3746
54 Ga0111539_10009341 3300009094 Bacteria 12381
55 Ga0111539_10018712 3300009094 Bacteria 8576
56 Ga0111539_10221088 3300009094 Bacteria 2206
57 Ga0105247_10022738 3300009101 Bacteria 3775
58 Ga0105241_10155833 3300009174 Bacteria 1873
59 Ga0105242_10025718 3300009176 Bacteria 4661
60 Ga0105242_10315808 3300009176 Bacteria 1431
61 Ga0105248_10105209 3300009177 Bacteria 3182
62 Ga0105238_10000032 3300009551 Bacteria 178226
63 Ga0157373_10004849 3300013100 Bacteria 10124
64 Ga0157373_10051695 3300013100 Bacteria 2926
65 Ga0157370_10007003 3300013104 Bacteria 12314
66 Ga0157370_10030417 3300013104 Bacteria 5290
67 Ga0157370_10086561 3300013104 Bacteria 2944
68 Ga0157369_10080126 3300013105 Bacteria 3497
69 Ga0157374_10116621 3300013296 Bacteria 2573
70 Ga0157372_10016747 3300013307 Bacteria 7869
71 Ga0157372_10020297 3300013307 Bacteria 7167
72 Ga0213876_10043184 3300021384 Bacteria 2383
73 Ga0213875_10062116 3300021388 Bacteria 1748
74 Ga0207684_10000098 3300025910 Bacteria 163921
75 Ga0207654_10156833 3300025911 Bacteria 1467
76 Ga0207707_10003233 3300025912 Bacteria 14468
77 Ga0207707_10006784 3300025912 Bacteria 9993
78 Ga0207707_10061907 3300025912 Bacteria 3256
79 Ga0207695_10004300 3300025913 Bacteria 19520
80 Ga0207695_10017324 3300025913 Bacteria 8387
81 Ga0207695_10017980 3300025913 Bacteria 8186
82 Ga0207695_10027839 3300025913 Bacteria 6284
83 Ga0207660_10003919 3300025917 Bacteria 9701
84 Ga0207660_10041123 3300025917 Bacteria 3238
85 Ga0207657_10095446 3300025919 Bacteria 2474
86 Ga0207649_10018756 3300025920 Bacteria 3942
87 Ga0207652_10008285 3300025921 Bacteria 8358
88 Ga0207652_10018766 3300025921 Bacteria 5676
89 Ga0207646_10035451 3300025922 Bacteria 4506
90 Ga0207646_10036622 3300025922 Bacteria 4428
91 Ga0207694_10000041 3300025924 Bacteria 183415
92 Ga0207706_10070932 3300025933 Bacteria 3064
93 Ga0207670_10002468 3300025936 Bacteria 9704
94 Ga0207669_10061170 3300025937 Bacteria 2313
95 Ga0207661_10004949 3300025944 Bacteria 9342
96 Ga0207661_10046902 3300025944 Bacteria 3427
97 Ga0207640_10004008 3300025981 Bacteria 7958
98 Ga0207677_10004681 3300026023 Bacteria 7372
99 Ga0207678_10315052 3300026067 Bacteria 1345
100 Ga0207702_10238122 3300026078 Bacteria 1704
101 Ga0207702_10266061 3300026078 Bacteria 1616
102 Ga0207641_10076007 3300026088 Bacteria 2902
103 Ga0207648_10009188 3300026089 Bacteria 9497
104 Ga0207683_10031192 3300026121 Bacteria 4625
105 Ga0209983_1001439 3300027665 Bacteria 5284
106 Ga0209588_1000023 3300027671 Bacteria 91412
107 Ga0209971_1000664 3300027682 Bacteria 8939
108 Ga0209974_10004236 3300027876 Bacteria 5123
109 Ga0207428_10024448 3300027907 Bacteria 5071
110 Ga0268264_10009389 3300028381 Bacteria 8098
111 Ga0265319_1002568 3300028563 Bacteria 9805
112 Ga0265318_10000405 3300028577 Bacteria 33365
113 Ga0265318_10000511 3300028577 Bacteria 27983
114 Ga0265330_10000283 3300031235 Bacteria 37355
115 Ga0265332_10001183 3300031238 Bacteria 15104
116 Ga0265328_10001453 3300031239 Bacteria 10916
117 Ga0265320_10000107 3300031240 Bacteria 71709
118 Ga0265320_10069770 3300031240 Bacteria 1658
119 Ga0265325_10000626 3300031241 Bacteria 25803
120 Ga0265329_10001833 3300031242 Bacteria 10097
121 Ga0265340_10001657 3300031247 Bacteria 12793
122 Ga0265340_10002261 3300031247 Bacteria 11008
123 Ga0265339_10002228 3300031249 Bacteria 14049
124 Ga0265331_10000815 3300031250 Bacteria 25723
125 Ga0265331_10027458 3300031250 Bacteria 2853
126 Ga0265331_10055284 3300031250 Bacteria 1888
127 Ga0265316_10000561 3300031344 Bacteria 41437
128 Ga0265316_10000598 3300031344 Bacteria 40222
129 Ga0307513_10080381 3300031456 Unclassified 3363
130 Ga0265313_10000095 3300031595 Bacteria 89645
131 Ga0265313_10005604 3300031595 Bacteria 9187
132 Ga0265314_10016072 3300031711 Bacteria 5925
133 Ga0265314_10023917 3300031711 Bacteria 4644
134 Ga0265342_10001198 3300031712 Bacteria 24638
135 Ga0307410_10015156 3300031852 Bacteria 4564
136 Ga0307412_10006010 3300031911 Bacteria 6841
137 Ga0307507_10035104 3300033179 Bacteria 5159
138 Ga0373957_0048139 3300035120 Bacteria 1624
139 Ga0373935_0047835 3300035692 Bacteria 2706
140 Ga0373927_0014626 3300035695 Bacteria 5190
141 Ga0373925_0064968 3300037068 Bacteria 2748
142 Ga0436364_1262696 3300037853 Bacteria 5900
143 Ga0439434_0035425 3300042435 Bacteria 1526
144 Ga0466963_0150027 3300044694 Bacteria 1618
145 Ga0466957_0115302 3300044842 Bacteria 1708
146 Ga0466959_0180488 3300045049 Bacteria 1477
147 Ga0451576_0053729 3300045051 Bacteria 4218
148 Ga0451576_0086978 3300045051 Bacteria 3251
149 Ga0495653_0022235 3300046463 Bacteria 5133
150 Ga0495653_0027727 3300046463 Bacteria 4533
151 Ga0495662_0020278 3300046476 Bacteria 3215
152 Ga0495608_0044421 3300046511 Bacteria 2966
153 Ga0495618_0001809 3300046514 Bacteria 14152
154 Ga0495618_0121704 3300046514 Bacteria 1671
155 Ga0495628_0017778 3300046516 Bacteria 5907
156 Ga0495630_0019600 3300046517 Bacteria 4975
157 Ga0495652_0018331 3300046529 Bacteria 6243
158 Ga0495587_0102315 3300046536 Bacteria 1649
159 Ga0495645_0042455 3300046543 Bacteria 3315
160 Ga0495634_0028750 3300046642 Bacteria 3855
161 Ga0495599_0006041 3300046678 Bacteria 7286
162 Ga0495669_0052934 3300046684 Bacteria 1825
163 Ga0495624_0034997 3300046690 Bacteria 3245
164 Ga0495600_0014446 3300046809 Bacteria 4977
165 Ga0495581_0024974 3300047315 Bacteria 3463
166 Ga0495604_0100560 3300047317 Bacteria 2125
167 Ga0495674_0041698 3300047319 Bacteria 4098
168 Ga0495680_0010944 3300047322 Bacteria 8061
169 Ga0495675_0035115 3300047444 Bacteria 3203
170 Ga0495675_0036549 3300047444 Bacteria 3131
171 Ga0495684_0003047 3300047471 Bacteria 13184
172 Ga0495602_0023292 3300048088 Bacteria 6037
173 Ga0501081_0036627 3300049743 Bacteria 3346
174 Ga0501045_0201624 3300049824 Bacteria 1482
175 nmdc:mga09592_233305_c1 3300050508 Bacteria 1594
176 nmdc:mga09592_44699_c1 3300050508 Bacteria 3729
177 nmdc:mga0qj67_101380_c1 3300050509 Bacteria 2321
178 nmdc:mga0qj67_123609_c1 3300050509 Bacteria 2094
179 nmdc:mga06r32_14322_c1 3300050510 Bacteria 7194
180 nmdc:mga06r32_31189_c1 3300050510 Bacteria 5004
181 nmdc:mga06r32_68949_c1 3300050510 Bacteria 3417
182 nmdc:mga08y16_115974_c1 3300050511 Bacteria 2788
183 nmdc:mga08y16_247647_c1 3300050511 Unclassified 1841
184 nmdc:mga08y16_45449_c1 3300050511 Bacteria 4601
185 nmdc:mga08y16_6766_c1 3300050511 Bacteria 12025
186 nmdc:mga0rr50_11424_c1 3300050513 Bacteria 5686
187 nmdc:mga0rr50_153867_c1 3300050513 Bacteria 1861
188 nmdc:mga08x19_16386_c1 3300050514 Bacteria 4521
189 nmdc:mga0a205_42_c2 3300050515 Bacteria 38218
190 nmdc:mga0a205_52159_c1 3300050515 Bacteria 3948
191 Ga0495595_0058803 3300053084 Unclassified 1796
192 Ga0501082_0013765 3300060353 Bacteria 6955
193 Ga0075430_100074124
194 Ga0070683_100004535
195 Ga0070683_100020990
196 Ga0070680_100083362
197 Ga0070680_100118223
198 Ga0070691_10006992
199 Ga0070714_100018398
200 Ga0070708_100002525
201 Ga0070708_100012513
202 Ga0070678_100013097
203 Ga0070681_10009983
204 Ga0070681_10011708
205 Ga0070681_10195746
206 Ga0068867_100040086
207 Ga0070706_100000074
208 Ga0070707_100005205
209 Ga0070699_100055249
210 Ga0070699_100058265
211 Ga0070679_100012844
212 Ga0070679_100031118
213 Ga0070679_100041022
214 Ga0070697_100020269
215 Ga0070695_100012635
216 Ga0070695_100128555
217 Ga0070665_100043856
218 Ga0068855_100031472
219 Ga0068855_100097011
220 Ga0070664_100112133
221 Ga0068854_100080935
222 Ga0068856_100286623
223 Ga0068852_100068443
224 Ga0068859_100000001
225 Ga0068859_100070104
226 Ga0068858_100290863
227 Ga0068860_100005615
228 Ga0070717_10025622
229 Ga0075428_100057937
230 Ga0075428_100105967
231 Ga0075428_100320479
232 Ga0075430_100066150
233 Ga0075431_100020586
234 Ga0075431_100077313
235 Ga0075431_100119015
236 Ga0075431_100172539
237 Ga0075433_10000355
238 Ga0075429_100033073
239 Ga0075436_100012391
240 Ga0097620_100000001
241 Ga0097620_100070104
242 Ga0075435_100234991
243 Ga0099794_10000029
244 Ga0105240_10026535
245 Ga0105240_10090221
246 Ga0111539_10009341
247 Ga0111539_10018712
248 Ga0111539_10221088
249 Ga0105247_10022738
250 Ga0105241_10155833
251 Ga0105242_10025718
252 Ga0105242_10315808
253 Ga0105248_10105209
254 Ga0105238_10000032
255 Ga0157373_10004849
256 Ga0157373_10051695
257 Ga0157370_10007003
258 Ga0157370_10030417
259 Ga0157370_10086561
260 Ga0157369_10080126
261 Ga0157374_10116621
262 Ga0157372_10016747
263 Ga0157372_10020297
264 Ga0213876_10043184
265 Ga0213875_10062116
266 Ga0207684_10000098
267 Ga0207654_10156833
268 Ga0207707_10003233
269 Ga0207707_10006784
270 Ga0207707_10061907
271 Ga0207695_10004300
272 Ga0207695_10017324
273 Ga0207695_10017980
274 Ga0207695_10027839
275 Ga0207660_10003919
276 Ga0207660_10041123
277 Ga0207657_10095446
278 Ga0207649_10018756
279 Ga0207652_10008285
280 Ga0207652_10018766
281 Ga0207646_10035451
282 Ga0207646_10036622
283 Ga0207694_10000041
284 Ga0207706_10070932
285 Ga0207670_10002468
286 Ga0207669_10061170
287 Ga0207661_10004949
288 Ga0207661_10046902
289 Ga0207640_10004008
290 Ga0207677_10004681
291 Ga0207678_10315052
292 Ga0207702_10238122
293 Ga0207702_10266061
294 Ga0207641_10076007
295 Ga0207648_10009188
296 Ga0207683_10031192
297 Ga0209983_1001439
298 Ga0209588_1000023
299 Ga0209971_1000664
300 Ga0209974_10004236
301 Ga0207428_10024448
302 Ga0268264_10009389
303 Ga0265319_1002568
304 Ga0265318_10000405
305 Ga0265318_10000511
306 Ga0265330_10000283
307 Ga0265332_10001183
308 Ga0265328_10001453
309 Ga0265320_10000107
310 Ga0265320_10069770
311 Ga0265325_10000626
312 Ga0265329_10001833
313 Ga0265340_10001657
314 Ga0265340_10002261
315 Ga0265339_10002228
316 Ga0265331_10000815
317 Ga0265331_10027458
318 Ga0265331_10055284
319 Ga0265316_10000561
320 Ga0265316_10000598
321 Ga0307513_10080381
322 Ga0265313_10000095
323 Ga0265313_10005604
324 Ga0265314_10016072
325 Ga0265314_10023917
326 Ga0265342_10001198
327 Ga0307410_10015156
328 Ga0307412_10006010
329 Ga0307507_10035104
330 Ga0373957_0048139
331 Ga0373935_0047835
332 Ga0373927_0014626
333 Ga0373925_0064968
334 Ga0436364_1262696
335 Ga0439434_0035425
336 Ga0466963_0150027
337 Ga0466957_0115302
338 Ga0466959_0180488
339 Ga0451576_0053729
340 Ga0451576_0086978
341 Ga0495653_0022235
342 Ga0495653_0027727
343 Ga0495662_0020278
344 Ga0495608_0044421
345 Ga0495618_0001809
346 Ga0495618_0121704
347 Ga0495628_0017778
348 Ga0495630_0019600
349 Ga0495652_0018331
350 Ga0495587_0102315
351 Ga0495645_0042455
352 Ga0495634_0028750
353 Ga0495599_0006041
354 Ga0495669_0052934
355 Ga0495624_0034997
356 Ga0495600_0014446
357 Ga0495581_0024974
358 Ga0495604_0100560
359 Ga0495674_0041698
360 Ga0495680_0010944
361 Ga0495675_0035115
362 Ga0495675_0036549
363 Ga0495684_0003047
364 Ga0495602_0023292
365 Ga0501081_0036627
366 Ga0501045_0201624
367 nmdc:mga09592_233305_c1
368 nmdc:mga09592_44699_c1
369 nmdc:mga0qj67_101380_c1
370 nmdc:mga0qj67_123609_c1
371 nmdc:mga06r32_14322_c1
372 nmdc:mga06r32_31189_c1
373 nmdc:mga06r32_68949_c1
374 nmdc:mga08y16_115974_c1
375 nmdc:mga08y16_247647_c1
376 nmdc:mga08y16_45449_c1
377 nmdc:mga08y16_6766_c1
378 nmdc:mga0rr50_11424_c1
379 nmdc:mga0rr50_153867_c1
380 nmdc:mga08x19_16386_c1
381 nmdc:mga0a205_42_c2
382 nmdc:mga0a205_52159_c1
383 Ga0495595_0058803
384 Ga0501082_0013765

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00682

HMGL-like

HMGL-like

43

314

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ewb-assembly1.cif.gz_X-2 crystal structure of n-terminal domain of putative 2-isopropylmalate synthase from listeria monocytogenes 0.9043 32 304
3eeg-assembly1.cif.gz_A crystal structure of a 2-isopropylmalate synthase from cytophaga hutchinsonii 0.9036 29 305
3rmj-assembly1.cif.gz_A crystal structure of truncated alpha-isopropylmalate synthase from neisseria meningitidis 0.9018 29 322
3eeg-assembly1.cif.gz_B crystal structure of a 2-isopropylmalate synthase from cytophaga hutchinsonii 0.9007 29 305
3rmj-assembly1.cif.gz_B crystal structure of truncated alpha-isopropylmalate synthase from neisseria meningitidis 0.899 29 322
ID Description Score Start End Superfamily
af_Q57926_26_296_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9437 30 305 3.20.20.70
af_I1NJA3_77_365_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.922 32 305 3.20.20.70
af_Q57926_26_296_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9201 30 305 3.20.20.70
3ivsA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9138 31 307 3.20.20.70
af_A0A1D6MHP8_1_197_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9098 140 329 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A7W0WV07-F1-model_v4 2-isopropylmalate synthase 0.9833 204 418 GO:0016740
AF-A0A2W0BJP7-F1-model_v4 2-isopropylmalate synthase 0.978 103 416 GO:0003852
GO:0009098
AF-A0A2V7RX51-F1-model_v4 2-isopropylmalate synthase 0.9747 109 414 GO:0016740
AF-A0A2V8DTS5-F1-model_v4 2-isopropylmalate synthase 0.9742 14 418 GO:0003852
GO:0009098
AF-A0A2V9UQ83-F1-model_v4 2-isopropylmalate synthase 0.9724 126 414 GO:0016740

Map