F294353

General Info

Members Datasets Scaffolds Average Seq Length
191 131 382 337

Family's Representative Sequence

Representative Sequence 3300037418|Ga0395900_0072902|Ga0395900_0072902_890_2014
Length 374
Sequence MAQEFRLPDLGEGLTEGEVARWLVAEGTEIREDDPLVEIQTDKATVEIPSPFEGTVLRILVAEGEVAPVGTALVLIGAPDDGADDGASGKEQVSPSDKVSQGRVPAGAAGVSRVQATPLVRRIAEELGVELSSLRGTGPNGRITEADVRSAATAVEGPSNLEGRREPLRGIRRLIAEHMTRAHREVPAVTWVEECDFERLELDRIVATVVKACTEALGEFPELNARLEDGEIVYLDRYDIGVAVQTDLGLVVPVVRDCDTKSIEAIDTEIRTLAERARDGKLAPDEVRGSTFTVTSAGRVAGLFQTPIVNHPEVAILSVGRVAPRAVVRDGVIVVRRMGHVAVTFDHRVVDGARAAEFGLAVIARLESGGTETA

Samples

Sample ID Description Type Environment
1 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
4 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
5 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
12 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
17 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
18 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
19 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
20 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
21 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
22 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
23 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
24 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
25 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
27 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
29 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
30 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
37 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
38 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
39 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
40 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
41 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
42 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
43 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
44 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
45 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
46 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
47 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
48 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
49 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
50 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
51 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
52 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
53 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
54 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
55 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
56 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
57 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
58 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
59 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
60 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
61 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
62 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
63 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
64 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
65 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
66 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
67 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
68 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
69 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
70 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
71 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
72 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
73 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
74 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
75 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
76 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
77 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
78 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
79 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
80 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
81 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
82 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
83 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
84 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
85 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
86 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
87 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
88 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
89 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
90 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
91 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
92 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
93 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
94 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
95 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
96 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
97 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
98 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
99 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
100 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
101 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
102 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
112 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
113 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
114 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
115 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
116 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
117 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
118 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
119 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
120 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
121 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
122 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
123 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
124 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
125 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
126 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
127 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
128 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
129 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
130 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
131 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 12.04
Rhizosphere 87.96
Stem 0
Stem Tuber 0
Unclassified 1.57

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0395900_0072902 3300037418 Bacteria 3530
2 JGI25407J50210_10000049 3300003373 Bacteria 13840
3 Ga0070671_100034327 3300005355 Bacteria 4199
4 Ga0070673_100162166 3300005364 Bacteria 1902
5 Ga0070709_10054890 3300005434 Bacteria 2513
6 Ga0070714_100275912 3300005435 Bacteria 1560
7 Ga0070713_100029979 3300005436 Bacteria 4314
8 Ga0070713_100319977 3300005436 Bacteria 1432
9 Ga0070711_100276163 3300005439 Bacteria 1328
10 Ga0070705_100211321 3300005440 Bacteria 1338
11 Ga0070708_100166269 3300005445 Bacteria 2058
12 Ga0070708_100247839 3300005445 Bacteria 1673
13 Ga0070706_100034799 3300005467 Bacteria 4651
14 Ga0070707_100000899 3300005468 Bacteria 29535
15 Ga0070707_100002053 3300005468 Bacteria 19286
16 Ga0070707_100016042 3300005468 Bacteria 7027
17 Ga0070698_100030717 3300005471 Bacteria 5569
18 Ga0070699_100281871 3300005518 Unclassified 1489
19 Ga0070684_100074442 3300005535 Bacteria 2993
20 Ga0081455_10071134 3300005937 Bacteria 2885
21 Ga0081538_10000055 3300005981 Bacteria 106524
22 Ga0081538_10000429 3300005981 Bacteria 47236
23 Ga0081540_1004339 3300005983 Bacteria 10865
24 Ga0070717_10043320 3300006028 Bacteria 3673
25 Ga0070717_10076910 3300006028 Bacteria 2794
26 Ga0070716_100079756 3300006173 Bacteria 1950
27 Ga0075433_10000600 3300006852 Bacteria 23981
28 Ga0075434_100001480 3300006871 Bacteria 19792
29 Ga0068865_100077769 3300006881 Bacteria 2372
30 Ga0075435_100000140 3300007076 Bacteria 40976
31 Ga0111539_10287131 3300009094 Bacteria 1915
32 Ga0105245_10200341 3300009098 Bacteria 1917
33 Ga0114129_10014116 3300009147 Bacteria 11378
34 Ga0105248_10312981 3300009177 Bacteria 1768
35 Ga0157375_10064557 3300013308 Archaea 3646
36 Ga0207688_10019993 3300025901 Bacteria 3653
37 Ga0207685_10060793 3300025905 Bacteria 1495
38 Ga0207684_10126404 3300025910 Bacteria 2194
39 Ga0207646_10001459 3300025922 Bacteria 29261
40 Ga0207646_10011282 3300025922 Bacteria 8677
41 Ga0207646_10012880 3300025922 Bacteria 8016
42 Ga0207700_10000001 3300025928 Bacteria 1122509
43 Ga0207700_10173897 3300025928 Bacteria 1798
44 Ga0207700_10314709 3300025928 Bacteria 1355
45 Ga0207651_10150638 3300025960 Bacteria 1810
46 Ga0265334_10050091 3300028573 Bacteria 1605
47 Ga0265318_10003022 3300028577 Bacteria 8668
48 Ga0265323_10033465 3300028653 Bacteria 1903
49 Ga0265336_10002939 3300028666 Bacteria 6837
50 Ga0265338_10014149 3300028800 Bacteria 8918
51 Ga0265338_10015522 3300028800 Bacteria 8358
52 Ga0265338_10017213 3300028800 Bacteria 7807
53 Ga0265332_10006348 3300031238 Bacteria 5366
54 Ga0265320_10019726 3300031240 Bacteria 3676
55 Ga0265340_10028024 3300031247 Bacteria 2835
56 Ga0265339_10017576 3300031249 Bacteria 4231
57 Ga0265327_10020097 3300031251 Bacteria 4082
58 Ga0265316_10016110 3300031344 Bacteria 6500
59 Ga0265313_10025489 3300031595 Bacteria 3132
60 Ga0307415_100206036 3300032126 Bacteria 1565
61 Ga0373943_0002587 3300035170 Bacteria 8227
62 Ga0373943_0056924 3300035170 Bacteria 1942
63 Ga0373946_0055347 3300035171 Bacteria 1672
64 Ga0373933_0091999 3300035724 Bacteria 1873
65 Ga0373947_0015545 3300035725 Bacteria 4371
66 Ga0373937_0066784 3300036401 Bacteria 3313
67 Ga0373937_0353518 3300036401 Bacteria 1392
68 Ga0373925_0006395 3300037068 Bacteria 8672
69 Ga0395899_0016920 3300037312 Bacteria 5558
70 Ga0395899_0022761 3300037312 Bacteria 4748
71 Ga0395899_0050236 3300037312 Bacteria 3097
72 Ga0395899_0150985 3300037312 Bacteria 1647
73 Ga0395900_0004217 3300037418 Bacteria 15258
74 Ga0395900_0020085 3300037418 Bacteria 6814
75 Ga0395900_0046588 3300037418 Bacteria 4466
76 Ga0395900_0095656 3300037418 Bacteria 3052
77 Ga0395898_0007932 3300037466 Bacteria 11262
78 Ga0395898_0070560 3300037466 Bacteria 3377
79 Ga0395898_0082783 3300037466 Bacteria 3093
80 Ga0395905_0017218 3300037471 Bacteria 6864
81 Ga0395905_0034121 3300037471 Bacteria 4778
82 Ga0395905_0034746 3300037471 Bacteria 4734
83 Ga0395905_0064549 3300037471 Bacteria 3426
84 Ga0395905_0094423 3300037471 Bacteria 2806
85 Ga0395905_0114211 3300037471 Bacteria 2537
86 Ga0395905_0168374 3300037471 Bacteria 2058
87 Ga0395905_0294132 3300037471 Bacteria 1511
88 Ga0395901_0005366 3300038443 Bacteria 12957
89 Ga0395901_0029140 3300038443 Bacteria 5681
90 Ga0395901_0030208 3300038443 Bacteria 5583
91 Ga0395901_0057543 3300038443 Bacteria 4043
92 Ga0395901_0110717 3300038443 Bacteria 2883
93 Ga0395901_0111474 3300038443 Bacteria 2873
94 Ga0395901_0133380 3300038443 Bacteria 2610
95 Ga0395901_0321668 3300038443 Bacteria 1600
96 Ga0395901_0390147 3300038443 Bacteria 1432
97 Ga0451793_0345628 3300041452 Bacteria 4533
98 Ga0466961_0070952 3300044693 Bacteria 2211
99 Ga0466963_0008395 3300044694 Bacteria 6187
100 Ga0466963_0045859 3300044694 Bacteria 2880
101 Ga0466963_0077579 3300044694 Bacteria 2245
102 Ga0466957_0122484 3300044842 Bacteria 1659
103 Ga0466960_0001620 3300044901 Bacteria 8232
104 Ga0451576_0346357 3300045051 Unclassified 1556
105 Ga0466958_0008288 3300045836 Bacteria 5754
106 Ga0466967_0018475 3300045976 Bacteria 5573
107 Ga0466967_0097188 3300045976 Bacteria 2688
108 Ga0466967_0108757 3300045976 Bacteria 2544
109 Ga0466967_0132344 3300045976 Bacteria 2316
110 Ga0495603_0002733 3300046455 Bacteria 10402
111 Ga0495641_0004571 3300046461 Bacteria 9703
112 Ga0495653_0064497 3300046463 Bacteria 2760
113 Ga0495653_0092478 3300046463 Bacteria 2208
114 Ga0495582_0047649 3300046473 Unclassified 2360
115 Ga0495596_0102102 3300046500 Bacteria 1114
116 Ga0495618_0243644 3300046514 Bacteria 1129
117 Ga0495630_0019727 3300046517 Bacteria 4960
118 Ga0495666_0001406 3300046526 Bacteria 11650
119 Ga0495652_0085339 3300046529 Bacteria 2595
120 Ga0495665_0003369 3300046531 Bacteria 8673
121 Ga0495640_0087286 3300046533 Bacteria 2063
122 Ga0495634_0036962 3300046642 Bacteria 3338
123 Ga0495646_0066553 3300046680 Bacteria 2131
124 Ga0495658_0077698 3300046683 Bacteria 1941
125 Ga0495581_0010185 3300047315 Bacteria 5438
126 Ga0495674_0049922 3300047319 Bacteria 3694
127 Ga0495676_0007468 3300047321 Bacteria 10024
128 Ga0495676_0043184 3300047321 Bacteria 3693
129 Ga0495680_0045617 3300047322 Bacteria 3460
130 Ga0495684_0088337 3300047471 Bacteria 2349
131 Ga0495593_0001892 3300047673 Bacteria 12466
132 Ga0495602_0130459 3300048088 Bacteria 2006
133 Ga0496101_0220428 3300048904 Bacteria 1472
134 Ga0496102_0534110 3300048905 Bacteria 1095
135 Ga0496103_0020118 3300048906 Bacteria 4008
136 Ga0496104_0043283 3300048907 Bacteria 4229
137 Ga0496104_0129567 3300048907 Archaea 2423
138 Ga0496104_0132383 3300048907 Bacteria 2395
139 Ga0496105_0034481 3300048908 Bacteria 4162
140 Ga0496106_0028526 3300048909 Bacteria 4157
141 Ga0496107_0026829 3300048910 Bacteria 4087
142 Ga0496108_0026744 3300048911 Bacteria 4762
143 Ga0496109_0002357 3300048912 Bacteria 15771
144 Ga0496109_0066351 3300048912 Bacteria 3304
145 Ga0496109_0107591 3300048912 Bacteria 2590
146 Ga0496110_0060705 3300048913 Archaea 3335
147 Ga0496110_0105271 3300048913 Bacteria 2531
148 Ga0496111_0000891 3300048914 Bacteria 16255
149 Ga0496112_0000985 3300048915 Bacteria 20801
150 Ga0496112_0036798 3300048915 Bacteria 4775
151 Ga0496112_0094481 3300048915 Bacteria 2960
152 Ga0496113_0049776 3300048916 Archaea 3122
153 Ga0496114_0039595 3300048917 Bacteria 3900
154 Ga0496114_0047425 3300048917 Bacteria 3574
155 Ga0501031_0014475 3300049568 Bacteria 5127
156 Ga0501031_0061280 3300049568 Bacteria 2452
157 Ga0501033_0003469 3300049570 Bacteria 12934
158 Ga0501036_0013647 3300049572 Bacteria 6755
159 Ga0501036_0108169 3300049572 Bacteria 2351
160 Ga0501038_0026555 3300049574 Bacteria 5157
161 Ga0501040_0002721 3300049576 Bacteria 11388
162 Ga0501041_0008600 3300049577 Bacteria 6012
163 Ga0501042_0003641 3300049578 Bacteria 9711
164 Ga0501043_0015346 3300049579 Bacteria 6000
165 Ga0501046_0044716 3300049580 Bacteria 3521
166 Ga0501068_0001653 3300049584 Bacteria 11918
167 Ga0501069_0002448 3300049585 Bacteria 9467
168 Ga0501069_0049507 3300049585 Bacteria 2335
169 Ga0501071_0172032 3300049587 Bacteria 1621
170 Ga0501071_0205389 3300049587 Bacteria 1480
171 Ga0501072_0001248 3300049588 Bacteria 18995
172 Ga0501072_0118718 3300049588 Bacteria 2107
173 Ga0501074_0006865 3300049590 Bacteria 8221
174 Ga0501075_0005149 3300049591 Bacteria 8941
175 Ga0501076_0103787 3300049592 Bacteria 2293
176 Ga0501079_0008205 3300049741 Bacteria 7915
177 Ga0501080_0012553 3300049742 Bacteria 7768
178 Ga0501081_0005881 3300049743 Bacteria 7940
179 Ga0501045_0017808 3300049824 Bacteria 5045
180 nmdc:mga05p37_8647_c1 3300050507 Bacteria 12037
181 nmdc:mga06r32_62611_c1 3300050510 Bacteria 3584
182 nmdc:mga0n895_5266_c1 3300050512 Bacteria 10771
183 nmdc:mga0rr50_225_c1 3300050513 Bacteria 30540
184 nmdc:mga0rr50_287985_c1 3300050513 Bacteria 1372
185 nmdc:mga08x19_1206_c1 3300050514 Bacteria 16147
186 nmdc:mga0a205_5304_c1 3300050515 Bacteria 11607
187 Ga0495595_0053424 3300053084 Bacteria 1877
188 Ga0495619_0242600 3300053085 Bacteria 1249
189 Ga0501084_0014665 3300054114 Bacteria 6498
190 Ga0501084_0069804 3300054114 Bacteria 2942
191 Ga0501082_0022397 3300060353 Bacteria 5442
192 Ga0395900_0072902
193 JGI25407J50210_10000049
194 Ga0070671_100034327
195 Ga0070673_100162166
196 Ga0070709_10054890
197 Ga0070714_100275912
198 Ga0070713_100029979
199 Ga0070713_100319977
200 Ga0070711_100276163
201 Ga0070705_100211321
202 Ga0070708_100166269
203 Ga0070708_100247839
204 Ga0070706_100034799
205 Ga0070707_100000899
206 Ga0070707_100002053
207 Ga0070707_100016042
208 Ga0070698_100030717
209 Ga0070699_100281871
210 Ga0070684_100074442
211 Ga0081455_10071134
212 Ga0081538_10000055
213 Ga0081538_10000429
214 Ga0081540_1004339
215 Ga0070717_10043320
216 Ga0070717_10076910
217 Ga0070716_100079756
218 Ga0075433_10000600
219 Ga0075434_100001480
220 Ga0068865_100077769
221 Ga0075435_100000140
222 Ga0111539_10287131
223 Ga0105245_10200341
224 Ga0114129_10014116
225 Ga0105248_10312981
226 Ga0157375_10064557
227 Ga0207688_10019993
228 Ga0207685_10060793
229 Ga0207684_10126404
230 Ga0207646_10001459
231 Ga0207646_10011282
232 Ga0207646_10012880
233 Ga0207700_10000001
234 Ga0207700_10173897
235 Ga0207700_10314709
236 Ga0207651_10150638
237 Ga0265334_10050091
238 Ga0265318_10003022
239 Ga0265323_10033465
240 Ga0265336_10002939
241 Ga0265338_10014149
242 Ga0265338_10015522
243 Ga0265338_10017213
244 Ga0265332_10006348
245 Ga0265320_10019726
246 Ga0265340_10028024
247 Ga0265339_10017576
248 Ga0265327_10020097
249 Ga0265316_10016110
250 Ga0265313_10025489
251 Ga0307415_100206036
252 Ga0373943_0002587
253 Ga0373943_0056924
254 Ga0373946_0055347
255 Ga0373933_0091999
256 Ga0373947_0015545
257 Ga0373937_0066784
258 Ga0373937_0353518
259 Ga0373925_0006395
260 Ga0395899_0016920
261 Ga0395899_0022761
262 Ga0395899_0050236
263 Ga0395899_0150985
264 Ga0395900_0004217
265 Ga0395900_0020085
266 Ga0395900_0046588
267 Ga0395900_0095656
268 Ga0395898_0007932
269 Ga0395898_0070560
270 Ga0395898_0082783
271 Ga0395905_0017218
272 Ga0395905_0034121
273 Ga0395905_0034746
274 Ga0395905_0064549
275 Ga0395905_0094423
276 Ga0395905_0114211
277 Ga0395905_0168374
278 Ga0395905_0294132
279 Ga0395901_0005366
280 Ga0395901_0029140
281 Ga0395901_0030208
282 Ga0395901_0057543
283 Ga0395901_0110717
284 Ga0395901_0111474
285 Ga0395901_0133380
286 Ga0395901_0321668
287 Ga0395901_0390147
288 Ga0451793_0345628
289 Ga0466961_0070952
290 Ga0466963_0008395
291 Ga0466963_0045859
292 Ga0466963_0077579
293 Ga0466957_0122484
294 Ga0466960_0001620
295 Ga0451576_0346357
296 Ga0466958_0008288
297 Ga0466967_0018475
298 Ga0466967_0097188
299 Ga0466967_0108757
300 Ga0466967_0132344
301 Ga0495603_0002733
302 Ga0495641_0004571
303 Ga0495653_0064497
304 Ga0495653_0092478
305 Ga0495582_0047649
306 Ga0495596_0102102
307 Ga0495618_0243644
308 Ga0495630_0019727
309 Ga0495666_0001406
310 Ga0495652_0085339
311 Ga0495665_0003369
312 Ga0495640_0087286
313 Ga0495634_0036962
314 Ga0495646_0066553
315 Ga0495658_0077698
316 Ga0495581_0010185
317 Ga0495674_0049922
318 Ga0495676_0007468
319 Ga0495676_0043184
320 Ga0495680_0045617
321 Ga0495684_0088337
322 Ga0495593_0001892
323 Ga0495602_0130459
324 Ga0496101_0220428
325 Ga0496102_0534110
326 Ga0496103_0020118
327 Ga0496104_0043283
328 Ga0496104_0129567
329 Ga0496104_0132383
330 Ga0496105_0034481
331 Ga0496106_0028526
332 Ga0496107_0026829
333 Ga0496108_0026744
334 Ga0496109_0002357
335 Ga0496109_0066351
336 Ga0496109_0107591
337 Ga0496110_0060705
338 Ga0496110_0105271
339 Ga0496111_0000891
340 Ga0496112_0000985
341 Ga0496112_0036798
342 Ga0496112_0094481
343 Ga0496113_0049776
344 Ga0496114_0039595
345 Ga0496114_0047425
346 Ga0501031_0014475
347 Ga0501031_0061280
348 Ga0501033_0003469
349 Ga0501036_0013647
350 Ga0501036_0108169
351 Ga0501038_0026555
352 Ga0501040_0002721
353 Ga0501041_0008600
354 Ga0501042_0003641
355 Ga0501043_0015346
356 Ga0501046_0044716
357 Ga0501068_0001653
358 Ga0501069_0002448
359 Ga0501069_0049507
360 Ga0501071_0172032
361 Ga0501071_0205389
362 Ga0501072_0001248
363 Ga0501072_0118718
364 Ga0501074_0006865
365 Ga0501075_0005149
366 Ga0501076_0103787
367 Ga0501079_0008205
368 Ga0501080_0012553
369 Ga0501081_0005881
370 Ga0501045_0017808
371 nmdc:mga05p37_8647_c1
372 nmdc:mga06r32_62611_c1
373 nmdc:mga0n895_5266_c1
374 nmdc:mga0rr50_225_c1
375 nmdc:mga0rr50_287985_c1
376 nmdc:mga08x19_1206_c1
377 nmdc:mga0a205_5304_c1
378 Ga0495595_0053424
379 Ga0495619_0242600
380 Ga0501084_0014665
381 Ga0501084_0069804
382 Ga0501082_0022397

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00364

Biotin_lipoyl

Biotin-requiring enzyme

3

76

0.97

PF02817

E3_binding

e3 binding domain

114

149

0.97

PF00198

2-oxoacid_dh

2-oxoacid dehydrogenases acyltransferase (catalytic domain)

160

371

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3rnm-assembly2.cif.gz_F the crystal structure of the subunit binding of human dihydrolipoamide transacylase (e2b) bound to human dihydrolipoamide dehydrogenase (e3) 0.9854 91 123
2eq8-assembly1.cif.gz_C crystal structure of lipoamide dehydrogenase from thermus thermophilus hb8 with psbdp 0.967 91 128
5gu9-assembly1.cif.gz_A structure of biotin carboxyl carrier protein from pyrococcus horikoshi ot3 (delta n79) a138i mutant 0.9668 4 77
2d5d-assembly1.cif.gz_A structure of biotin carboxyl carrier protein (74val start) from pyrococcus horikoshi ot3 ligand free form ii 0.9648 4 77
1w85-assembly1.cif.gz_I the crystal structure of pyruvate dehydrogenase e1 bound to the peripheral subunit binding domain of e2 0.9637 88 123
ID Description Score Start End Superfamily
3rnmF00 Few Secondary Structures;Irregular;Dihydrolipoamide Transferase;E3-binding domain 0.9854 91 123 4.10.320.10
af_P9WIS7_123_196_2.40.50.100 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.9844 6 77 2.40.50.100
af_B6TJY4_106_181_2.40.50.100 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.9812 3 78 2.40.50.100
af_O06159_5_87_2.40.50.100 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.9806 2 76 2.40.50.100
af_Q54TR7_75_160_2.40.50.100 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.9786 1 77 2.40.50.100
ID Description Score Start End GO Terms
AF-A0A3G9M7X5-F1-model_v4 deleted 0.9784 1 76
AF-A0A1Z5HY65-F1-model_v4 Glutaconyl-CoA decarboxylase subunit gamma, biotin carrier 0.9735 2 77
AF-A0A6J4TNW2-F1-model_v4 Lipoyl-binding domain-containing protein 0.9734 1 79 GO:0006086
GO:0045254
AF-A0A2L1CA85-F1-model_v4 2-oxoglutarate carboxylase large subunit (EC 6.4.1.7) (Pyruvate carboxylase subunit B (EC 6.4.1.1)) 0.9734 4 77 GO:0004736
GO:0005737
GO:0006090
GO:0006094
GO:0006814
GO:0008948
GO:0034029
AF-F9VLD8-F1-model_v4 deleted 0.9729 2 77

Map